BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate
reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
(352 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|288941383|ref|YP_003443623.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM
180]
gi|288896755|gb|ADC62591.1| Ribonucleoside-diphosphate reductase [Allochromatium vinosum DSM
180]
Length = 458
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 232/349 (66%), Positives = 283/349 (81%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
TGL + G RV VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M
Sbjct: 110 ATGLESLAMGASRVRVDDKRIINCRADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNA 169
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
DLALWK +GLT+DERL++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 170 DLALWKDPHGLTEDERLIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 229
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EA+H+H +QY++ SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ
Sbjct: 230 EALHTHAYQYVVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPHFQTGTPENDQ 289
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYI+RDES+H+NFGIDVIN
Sbjct: 290 KLLRELVAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVIN 349
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIKIENPHLWT EF+Q+ M+ EA LE YAH+TMP+G +GLNA E Y+ FIANRR
Sbjct: 350 QIKIENPHLWTPEFRQELVGMIREAVELEARYAHDTMPRGVLGLNAQMFEDYLHFIANRR 409
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
C QIGL + NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD
Sbjct: 410 CAQIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALNWD 458
>gi|53804295|ref|YP_114081.1| ribonucleotide-diphosphate reductase subunit beta [Methylococcus
capsulatus str. Bath]
gi|53758056|gb|AAU92347.1| ribonucleoside-diphosphate reductase, beta subunit [Methylococcus
capsulatus str. Bath]
Length = 403
Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats.
Identities = 229/349 (65%), Positives = 286/349 (81%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
TGL I+ G +R+ VDDKR++N R+D+NQL+P KY WAW+KYL AC NHWMP E+ M
Sbjct: 55 ATGLENIEMGARRIQVDDKRIINCRADLNQLVPFKYQWAWQKYLDACANHWMPQEINMNA 114
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ALWKS +GLT DER++IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 115 DIALWKSADGLTPDERIIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 174
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EA+H+H +QY++ SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ
Sbjct: 175 EALHTHAYQYVVESLGLDEGEVFNMYREVPAVARKAEWALPFTQYLADPYFKTGTPENDQ 234
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVIN
Sbjct: 235 KLLRELIAFYVIFEGIFFYVGFTQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVIN 294
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIK+ENPHLWT F+ + M+ EA +E YA++TMP+G +GLNAP ++Y+QFIANRR
Sbjct: 295 QIKVENPHLWTDGFKVEMVQMIREAVDIETQYAYDTMPRGILGLNAPMFKEYLQFIANRR 354
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
C QIGL + NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD
Sbjct: 355 CAQIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGTLSWD 403
>gi|300113307|ref|YP_003759882.1| ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113]
gi|299539244|gb|ADJ27561.1| Ribonucleoside-diphosphate reductase [Nitrosococcus watsonii C-113]
Length = 412
Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats.
Identities = 231/347 (66%), Positives = 284/347 (81%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M D+
Sbjct: 66 GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA
Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ+
Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI
Sbjct: 246 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 305
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K+ENPHLW+ F+Q++ M+ EA LE YAH+TMP+G +GLNAP E+Y++FIANRRC
Sbjct: 306 KLENPHLWSDSFKQETLRMIQEAVSLETQYAHDTMPRGVLGLNAPMFEEYLKFIANRRCA 365
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
QIGL + NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD
Sbjct: 366 QIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412
>gi|312795100|ref|YP_004028022.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
rhizoxinica HKI 454]
gi|312166875|emb|CBW73878.1| Ribonucleoside-diphosphate reductase beta chain (EC 1.17.4.1)
[Burkholderia rhizoxinica HKI 454]
Length = 416
Score = 352 bits (903), Expect = 4e-95, Method: Composition-based stats.
Identities = 220/351 (62%), Positives = 269/351 (76%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ SP A E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M
Sbjct: 66 DQQSNASPAPAPEARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 125
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
D+ALWK NGLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA
Sbjct: 126 SRDIALWKDPNGLTDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 185
Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
FEEA+H+H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ PSF TGT +A
Sbjct: 186 FEEAIHTHAYQYIVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPSFKTGTLEA 245
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
DQ+ L+ L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+
Sbjct: 246 DQKLLKSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 305
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
INQIK+ENPHLWT F+++ + A LE YA +TMP+G +GLNA + Y++FI N
Sbjct: 306 INQIKLENPHLWTPAFREEICGLFKHAVELEYRYAEDTMPRGVLGLNAGMFKSYLRFICN 365
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RRC QIGLEPLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 366 RRCQQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416
>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040522|gb|ACT57318.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040641|gb|ACT57437.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 352
Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats.
Identities = 352/352 (100%), Positives = 352/352 (100%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP
Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ
Sbjct: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD
Sbjct: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID
Sbjct: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA
Sbjct: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD
Sbjct: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
>gi|220935777|ref|YP_002514676.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp.
HL-EbGR7]
gi|219997087|gb|ACL73689.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp.
HL-EbGR7]
Length = 408
Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats.
Identities = 226/349 (64%), Positives = 287/349 (82%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
NTGL I+ G +R+ VDDK+++N R+D+NQL+P KY WAW+KYL C NHWMP E+ M
Sbjct: 60 NTGLEDIELGAERIRVDDKKIINCRADLNQLVPFKYQWAWQKYLDGCANHWMPQEINMNA 119
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ALWK NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 120 DIALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 179
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EA+H+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +T+ L+ P F TGT + DQ
Sbjct: 180 EALHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTRYLADPDFHTGTPENDQ 239
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ L++L FYV+FEG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVIN
Sbjct: 240 KLLRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVIN 299
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIK+ENPHLWT F+++ RTM+ +A LE YA +TMP+G +G+NA E+Y+ FIANRR
Sbjct: 300 QIKVENPHLWTAAFKEEMRTMIRDAVELEAQYARDTMPRGVLGMNAAMFEEYLHFIANRR 359
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
C QIGL ++ ENPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD
Sbjct: 360 CAQIGLAEIYPGAENPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 408
>gi|77165986|ref|YP_344511.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosococcus
oceani ATCC 19707]
gi|254436303|ref|ZP_05049809.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus
oceani AFC27]
gi|76884300|gb|ABA58981.1| Ribonucleoside-diphosphate reductase [Nitrosococcus oceani ATCC
19707]
gi|207087993|gb|EDZ65266.1| ribonucleoside-diphosphate reductase, beta subunit [Nitrosococcus
oceani AFC27]
Length = 412
Score = 350 bits (897), Expect = 2e-94, Method: Composition-based stats.
Identities = 231/347 (66%), Positives = 284/347 (81%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYLS C NHWMP E+ M D+
Sbjct: 66 GVEDIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLSGCANHWMPQEINMNADI 125
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA
Sbjct: 126 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 185
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ+
Sbjct: 186 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQHLADPQFHTGTAENDQKL 245
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI
Sbjct: 246 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 305
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K+ENPHLW+ F+Q++ M+ EA LE YAH+TMP+G +GLNAP E+Y++FIANRRC
Sbjct: 306 KLENPHLWSDSFKQETLRMIQEAVSLETQYAHDTMPRGVLGLNAPMFEEYLKFIANRRCA 365
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
QIGL + NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD
Sbjct: 366 QIGLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412
>gi|307731037|ref|YP_003908261.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003]
gi|307585572|gb|ADN58970.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1003]
Length = 411
Score = 349 bits (894), Expect = 5e-94, Method: Composition-based stats.
Identities = 218/358 (60%), Positives = 270/358 (75%), Gaps = 7/358 (1%)
Query: 2 ANNTGLSPIQAGEK-------RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHW 54
AN+ ++P+ G RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHW
Sbjct: 54 ANDIAVAPVARGAGTAAVSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHW 113
Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
MP EV M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECR
Sbjct: 114 MPQEVNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR 173
Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
Q+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P F
Sbjct: 174 QFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGF 233
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
TGT + DQ L+ L VF V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H
Sbjct: 234 KTGTLETDQTLLRSLIVFACVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMH 293
Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
NFGID+INQIK+ENP LWT EF+ + R + +A LE YA +TMP+G +GLNA +
Sbjct: 294 CNFGIDLINQIKLENPQLWTAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKS 353
Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
Y++FI NRRC QIGL+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 354 YLRFICNRRCQQIGLDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 411
>gi|148546452|ref|YP_001266554.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida F1]
gi|148510510|gb|ABQ77370.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida F1]
Length = 415
Score = 348 bits (893), Expect = 6e-94, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 277/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDVAEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVE 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 364 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|292490774|ref|YP_003526213.1| ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
gi|291579369|gb|ADE13826.1| Ribonucleoside-diphosphate reductase [Nitrosococcus halophilus Nc4]
Length = 415
Score = 348 bits (893), Expect = 7e-94, Method: Composition-based stats.
Identities = 230/347 (66%), Positives = 285/347 (82%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
G+ I+ G R+ VDDKR++N R+D+NQL+P KY WAWEKYL+ C NHWMP E+ M D+
Sbjct: 69 GIENIEMGAARIQVDDKRIINCRADLNQLVPFKYHWAWEKYLNGCANHWMPQEINMNADI 128
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
ALWKS +GLT+DER +IKRNLGFF +++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA
Sbjct: 129 ALWKSADGLTEDERTIIKRNLGFFVTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEA 188
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VH+H +QY + SLGLDEGE+FNMYREVP++ KA WAL +TQ L+ P F TGT + DQ+
Sbjct: 189 VHTHAYQYCVESLGLDEGEIFNMYREVPAVARKAEWALPFTQYLADPQFHTGTDENDQKL 248
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L++L FYV+FEG++FY GF QILS+GR NKM G AEQ+QYIMRDES+H+NFGIDVINQI
Sbjct: 249 LRELIAFYVIFEGIFFYVGFVQILSMGRRNKMTGTAEQFQYIMRDESMHMNFGIDVINQI 308
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
KIENPHLWT F+Q++ M+ EA LE YA++TMP+G +GLNAP ++Y++FIANRRC
Sbjct: 309 KIENPHLWTDSFKQETIQMIREAVSLETQYAYDTMPRGVLGLNAPMFDEYLKFIANRRCA 368
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
QIGL + NPFPWMSE++DLKKEKNFFETRVTEYQ G LKWD
Sbjct: 369 QIGLPEQYPGASNPFPWMSEILDLKKEKNFFETRVTEYQTGGALKWD 415
>gi|226945386|ref|YP_002800459.1| ribonucleotide-diphosphate reductase subunit beta [Azotobacter
vinelandii DJ]
gi|226720313|gb|ACO79484.1| Ribonucleoside-diphosphate reductase beta subunit [Azotobacter
vinelandii DJ]
Length = 416
Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 277/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP E+
Sbjct: 65 LDIREGLEDLEGAAARVRVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEIN 124
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS +GLT+DER +IKRNLGFF++++SLVANN+ LAIYR ++NPECRQY+LRQ
Sbjct: 125 MNADIALWKSADGLTEDERRIIKRNLGFFSTADSLVANNLALAIYRLITNPECRQYILRQ 184
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFDTGTPE 244
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D++ L++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDRQLLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 304
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLW E + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 305 MINQIKIENPHLWDAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNATMMEDYLKFIA 364
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR Q+GL + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 365 NRRLSQLGLPEQYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|91785256|ref|YP_560462.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
xenovorans LB400]
gi|91689210|gb|ABE32410.1| Ribonucleoside-diphosphate reductase [Burkholderia xenovorans
LB400]
Length = 411
Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats.
Identities = 215/339 (63%), Positives = 264/339 (77%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG
Sbjct: 73 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 132
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 133 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 192
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EV SI AK + + Y L+ P+F TGT +ADQ L+ L VF
Sbjct: 193 IVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 252
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 253 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 312
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+PL+
Sbjct: 313 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 372
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 373 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 411
>gi|330811278|ref|YP_004355740.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327379386|gb|AEA70736.1| Ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 415
Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats.
Identities = 216/352 (61%), Positives = 277/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDVAEGLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTPD 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|110635036|ref|YP_675244.1| ribonucleotide-diphosphate reductase subunit beta [Mesorhizobium
sp. BNC1]
gi|110286020|gb|ABG64079.1| ribonucleotide reductase [Chelativorans sp. BNC1]
Length = 369
Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats.
Identities = 273/351 (77%), Positives = 304/351 (86%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ TGL I+ G RV+VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M
Sbjct: 19 TDATGLGTIERGAGRVSVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSM 78
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
Q D+ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 79 QADIALWKSRDGLTEDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 138
Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL+YT+ L P+F TGT +A
Sbjct: 139 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALEYTRHLDDPNFRTGTPEA 198
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
DQ FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV
Sbjct: 199 DQAFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 258
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
INQIK ENPHLWT EFQ++ R ML +A LE AY +TMP+GF+GLNA CEQYM FIAN
Sbjct: 259 INQIKHENPHLWTPEFQEELRRMLKDAAELEAAYGRDTMPRGFLGLNAGQCEQYMHFIAN 318
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RRC Q+GL P+F TENPFPWMSE +DLKKEKNFFETRV EYQ G L WD
Sbjct: 319 RRCAQLGLPPVFPETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 369
>gi|293609145|ref|ZP_06691448.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024]
gi|292829718|gb|EFF88080.1| ribonucleoside-diphosphate reductase [Acinetobacter sp. SH024]
Length = 427
Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats.
Identities = 222/351 (63%), Positives = 281/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 77 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPE 256
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 317 MINQIKIENPHLWTAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|209885874|ref|YP_002289731.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha
carboxidovorans OM5]
gi|209874070|gb|ACI93866.1| ribonucleoside-diphosphate reductase, beta subunit [Oligotropha
carboxidovorans OM5]
Length = 377
Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats.
Identities = 273/351 (77%), Positives = 299/351 (85%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A TGL I RV+VD+KRM+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M
Sbjct: 27 AEQTGLGEIDRTGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLSGCNNHWMPTEVSM 86
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
Q D+ALWKS++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 87 QADIALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 146
Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F TGT +A
Sbjct: 147 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTKNLDDPDFKTGTLEA 206
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
DQ FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV
Sbjct: 207 DQAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 266
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
INQIK+ENPHLWTK FQ + R M+ EA LE AY +TMP+GF+GLNA CEQYM FIAN
Sbjct: 267 INQIKLENPHLWTKAFQDEVRGMISEAAGLEAAYGRDTMPRGFLGLNAALCEQYMHFIAN 326
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RRC QIGL P+F TENPFPWMSE +DLKKEKNFFETRV EYQ G L WD
Sbjct: 327 RRCAQIGLAPVFAETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWD 377
>gi|296160506|ref|ZP_06843322.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1]
gi|295889255|gb|EFG69057.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. Ch1-1]
Length = 415
Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats.
Identities = 215/339 (63%), Positives = 264/339 (77%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG
Sbjct: 77 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 136
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 137 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 196
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EV SI AK + + Y L+ P+F TGT +ADQ L+ L VF
Sbjct: 197 IVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 256
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 257 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 316
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+PL+
Sbjct: 317 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 376
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 377 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 415
>gi|192360823|ref|YP_001982048.1| ribonucleotide-diphosphate reductase subunit beta [Cellvibrio
japonicus Ueda107]
gi|190686988|gb|ACE84666.1| ribonucleoside reductase, beta subunit [Cellvibrio japonicus
Ueda107]
Length = 429
Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats.
Identities = 222/352 (63%), Positives = 285/352 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 78 LDPAPGLEELEMGAARIQVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 137
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKSK+GLT+DER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQ
Sbjct: 138 MTADIALWKSKDGLTEDERRIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQ 197
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+FEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W+L +T +L +P+FTTGT +
Sbjct: 198 SFEEAIHTHAYQYCIESLGMDEGEVFNMYRELPSVANKAAWSLHHTHSLGNPTFTTGTPE 257
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQE L++L FYVV EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 258 TDQELLRNLVAFYVVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 317
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIK+ENPHLWT EFQQ+ M+ E T LEI YA ++MP+G +G+NA E+Y+ FIA
Sbjct: 318 VINQIKLENPHLWTAEFQQEVLQMILEGTELEIQYARDSMPRGVLGMNAAMMEEYLHFIA 377
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRRC Q+GL+ F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD
Sbjct: 378 NRRCAQLGLKEQFPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 429
>gi|70731866|ref|YP_261608.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
fluorescens Pf-5]
gi|68346165|gb|AAY93771.1| ribonucleoside-diphosphate reductase, beta subunit, putative
[Pseudomonas fluorescens Pf-5]
Length = 415
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 216/352 (61%), Positives = 277/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDIAEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVD 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|161525957|ref|YP_001580969.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
multivorans ATCC 17616]
gi|160343386|gb|ABX16472.1| Ribonucleoside-diphosphate reductase [Burkholderia multivorans ATCC
17616]
Length = 396
Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats.
Identities = 217/344 (63%), Positives = 269/344 (78%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW
Sbjct: 53 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 112
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 113 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 172
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+
Sbjct: 173 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 232
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 233 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 292
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIG
Sbjct: 293 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 352
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 353 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 396
>gi|88812072|ref|ZP_01127324.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus
mobilis Nb-231]
gi|88790576|gb|EAR21691.1| ribonucleotide-diphosphate reductase beta subunit [Nitrococcus
mobilis Nb-231]
Length = 370
Score = 345 bits (885), Expect = 5e-93, Method: Composition-based stats.
Identities = 220/348 (63%), Positives = 278/348 (79%)
Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
TGL + G R+ VDDKR++N R+D+NQL+P KY WAWEKYL NHWMP E+PM D
Sbjct: 23 TGLDAPERGAARIRVDDKRIINCRADLNQLVPFKYHWAWEKYLQGSANHWMPQEIPMGRD 82
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ LWK ++GLT+DER ++KR+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 83 IELWKRRDGLTEDERTIVKRSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 142
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+H+H +QY+I SL +DEGE+FNMYREVPS+ KA WAL +T++L P F TGT ADQ
Sbjct: 143 ALHTHAYQYVIESLAMDEGEVFNMYREVPSVARKAEWALPFTESLGDPDFRTGTPAADQR 202
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
L+DL FYV FEG++FYTGFAQ+L++GR NKM G AEQ+QYI+RDES+HLNFGIDVINQ
Sbjct: 203 LLRDLIAFYVCFEGIFFYTGFAQVLAMGRRNKMTGTAEQFQYILRDESIHLNFGIDVINQ 262
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
IK ENPHLWT EFQ ++ + E+ LE+ YA +T+P+G +GLNA E+Y++FI NRR
Sbjct: 263 IKQENPHLWTAEFQATAQRTILESMALEVDYARDTLPRGVLGLNAAMIEEYLRFITNRRL 322
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
QIGL F ENP PWMSE++DLKKEKNFFETRVTEY+ G L W+
Sbjct: 323 AQIGLTEAFPGAENPLPWMSELVDLKKEKNFFETRVTEYRTGGALSWE 370
>gi|82703584|ref|YP_413150.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosospira
multiformis ATCC 25196]
gi|82411649|gb|ABB75758.1| Ribonucleoside-diphosphate reductase [Nitrosospira multiformis ATCC
25196]
Length = 408
Score = 345 bits (885), Expect = 5e-93, Method: Composition-based stats.
Identities = 217/339 (64%), Positives = 272/339 (80%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+RV+V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP E+ M D+ALWK NG
Sbjct: 70 HRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEINMSRDIALWKDPNG 129
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QY
Sbjct: 130 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHVTNPECRQYLLRQAFEEAIHTHAYQY 189
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EV SI K + + + TL+ PSF TGT +ADQ+ L+ L VF
Sbjct: 190 IVESLGLDEGEIFNAYHEVRSIREKDEFLIPFIDTLTDPSFRTGTLEADQKLLKSLIVFA 249
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDV+NQIK+ENPHLW
Sbjct: 250 CIMEGLFFYVGFIQILALGRQNKMTGSAEQYQYILRDESMHCNFGIDVVNQIKMENPHLW 309
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
TKEF+ + ++ +A LE YA +TMP+G +GLNAP ++Y+++IANRRC QIGL+ L+
Sbjct: 310 TKEFRSEISALMQKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRYIANRRCQQIGLDILY 369
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD
Sbjct: 370 PGASNPFPWMSEMIDLKKEKNFFETRVTEYQTGGVLNWD 408
>gi|88705571|ref|ZP_01103281.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter
litoralis KT71]
gi|88700084|gb|EAQ97193.1| ribonucleoside-diphosphate reductase, beta subunit [Congregibacter
litoralis KT71]
Length = 469
Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats.
Identities = 216/352 (61%), Positives = 279/352 (79%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G RV++D+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV
Sbjct: 118 LDVAPGLEELEMGASRVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVN 177
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+A WK+ GLTDDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ
Sbjct: 178 MTADVATWKNPEGLTDDERRIVLRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQ 237
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +T LS P+F TGT +
Sbjct: 238 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSISHTHELSDPNFRTGTLE 297
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 298 SDQTLLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 357
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIK+ENP LWT+EF+Q++ M+ E T LEI YA +TMP+G +G+NA E+Y+QFIA
Sbjct: 358 VINQIKLENPQLWTEEFKQEAIQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIA 417
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD
Sbjct: 418 NRRLSQIGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 469
>gi|110833571|ref|YP_692430.1| ribonucleotide-diphosphate reductase subunit beta [Alcanivorax
borkumensis SK2]
gi|110646682|emb|CAL16158.1| ribonucleoside reductase, beta subunit [Alcanivorax borkumensis
SK2]
Length = 430
Score = 345 bits (885), Expect = 6e-93, Method: Composition-based stats.
Identities = 221/352 (62%), Positives = 279/352 (79%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
M G++ ++ RV VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 79 MDIEDGVAELEGAAGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 138
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M DLALWK +GLTDDER ++KRNLGFFA+++SLVANN+VLAIYR ++NPECRQY+LRQ
Sbjct: 139 MNADLALWKKADGLTDDERRIVKRNLGFFATADSLVANNLVLAIYRLITNPECRQYILRQ 198
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+FEEA+H+H +QY I SLG+DEGE+FNMY+E+PS+ KA W +QYT+ LS P FTTGT +
Sbjct: 199 SFEEAIHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTPE 258
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGID
Sbjct: 259 TDKALLENLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGID 318
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIK+ENPHLW + + K+ M+ E T LEI YA +TMP+G +G+NA E+Y+QFIA
Sbjct: 319 VINQIKLENPHLWDAQMRDKATQMILEGTELEIQYARDTMPRGVLGMNAAMMEEYLQFIA 378
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR Q+GL FK NPFPWMSE++DL+KEKNFFETRVTEYQ G L W+
Sbjct: 379 NRRLAQLGLPEQFKGVNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 430
>gi|187925407|ref|YP_001897049.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
phytofirmans PsJN]
gi|187716601|gb|ACD17825.1| Ribonucleoside-diphosphate reductase [Burkholderia phytofirmans
PsJN]
Length = 415
Score = 345 bits (884), Expect = 7e-93, Method: Composition-based stats.
Identities = 215/339 (63%), Positives = 264/339 (77%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG
Sbjct: 77 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 136
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 137 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 196
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EV SI AK + + Y L+ P+F TGT +ADQ L+ L VF
Sbjct: 197 IVESLGLDEGEIFNAYHEVSSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 256
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 257 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 316
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+PL+
Sbjct: 317 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 376
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 377 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 415
>gi|256377255|ref|YP_003100915.1| ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM
43827]
gi|255921558|gb|ACU37069.1| Ribonucleoside-diphosphate reductase [Actinosynnema mirum DSM
43827]
Length = 358
Score = 345 bits (884), Expect = 7e-93, Method: Composition-based stats.
Identities = 265/347 (76%), Positives = 296/347 (85%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
GL I+ G RV+VDDK M+NAR+DVNQLLPLKY WAWEKYL+ C NHWMPTEV MQ D+
Sbjct: 12 GLGEIERGAGRVHVDDKAMINARADVNQLLPLKYHWAWEKYLAGCANHWMPTEVSMQADI 71
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
ALW+S NGLT DER IKRNLGFFA+SESLVANN+VLA+YR+++NPECRQYLLRQAFEEA
Sbjct: 72 ALWRSPNGLTADERHAIKRNLGFFATSESLVANNVVLAVYRNITNPECRQYLLRQAFEEA 131
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VH+HTF+YI +SLGLDEGELFNMYREVPSIT KA WAL+YT++L P F TGT +ADQ F
Sbjct: 132 VHTHTFEYICSSLGLDEGELFNMYREVPSITDKAAWALKYTKSLEDPEFRTGTPEADQAF 191
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID INQI
Sbjct: 192 LRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDAINQI 251
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
KIENPHLW + FQ + RTML EA LEIAY +TMP G +GLNA CEQYM+FI NRRC
Sbjct: 252 KIENPHLWGEAFQAEVRTMLAEACELEIAYGRDTMPNGLLGLNAELCEQYMRFITNRRCA 311
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
Q+GLEP+F TENPFPWMSE +DLKKEKNFFETRVTEY G L WD
Sbjct: 312 QLGLEPVFAATENPFPWMSEAVDLKKEKNFFETRVTEYASGGTLDWD 358
>gi|262376783|ref|ZP_06070011.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
lwoffii SH145]
gi|262308493|gb|EEY89628.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
lwoffii SH145]
Length = 427
Score = 344 bits (883), Expect = 8e-93, Method: Composition-based stats.
Identities = 222/351 (63%), Positives = 282/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 77 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPE 256
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQILLRNLIAFYCVLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENP LWT EFQ++ M+ E T+LEI YA +TMP+G +G+NA E+Y++FIA
Sbjct: 317 MINQIKIENPGLWTTEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAGMMEEYLKFIA 376
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 377 NRRLAQLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|170699976|ref|ZP_02891003.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
IOP40-10]
gi|170135124|gb|EDT03425.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
IOP40-10]
Length = 403
Score = 344 bits (883), Expect = 9e-93, Method: Composition-based stats.
Identities = 215/344 (62%), Positives = 269/344 (78%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW
Sbjct: 60 PAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|115350552|ref|YP_772391.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
ambifaria AMMD]
gi|172059584|ref|YP_001807236.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
ambifaria MC40-6]
gi|115280540|gb|ABI86057.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria AMMD]
gi|171992101|gb|ACB63020.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria
MC40-6]
Length = 403
Score = 344 bits (883), Expect = 9e-93, Method: Composition-based stats.
Identities = 215/344 (62%), Positives = 269/344 (78%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW
Sbjct: 60 PAAGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|72163401|ref|YP_291058.1| ribonucleotide-diphosphate reductase subunit beta [Thermobifida
fusca YX]
gi|71917133|gb|AAZ57035.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
Length = 354
Score = 344 bits (883), Expect = 9e-93, Method: Composition-based stats.
Identities = 274/350 (78%), Positives = 309/350 (88%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
N TGL IQ+G RV+V+DKRM+N+R+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV MQ
Sbjct: 5 NTTGLGEIQSGAARVDVEDKRMINSRADVNQLLPLKYRWAWEKYLAACNNHWMPTEVSMQ 64
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D+ALWKSK+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YRHL+NPECRQYLLRQAF
Sbjct: 65 ADIALWKSKDGLTEDERLMVKRNLGFFATAESLVANNIVLAVYRHLTNPECRQYLLRQAF 124
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
EEAVH+HTFQYI SLGLDEGELFNMYREVPSITAK WAL+YT+ L +P+FTTGT +AD
Sbjct: 125 EEAVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALRYTRNLENPNFTTGTPEAD 184
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
Q FL+DL FYVV EGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 185 QAFLRDLVAFYVVLEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 244
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
NQIKIENPHLWT+EFQ + RTML EA LE AY ETMP+G +GLNA CEQYM+FI +R
Sbjct: 245 NQIKIENPHLWTEEFQDEVRTMLIEACELEAAYGRETMPRGILGLNAKLCEQYMRFITDR 304
Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
R Q+GL P+F TENPFPWMSE++DLKKEKNFFETRV EYQ G+ L WD
Sbjct: 305 RAEQLGLAPIFGETENPFPWMSEMMDLKKEKNFFETRVIEYQTGSGLSWD 354
>gi|169797064|ref|YP_001714857.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AYE]
gi|213156529|ref|YP_002318190.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii AB0057]
gi|215484526|ref|YP_002326761.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter
baumannii AB307-0294]
gi|239501302|ref|ZP_04660612.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AB900]
gi|260555643|ref|ZP_05827863.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii ATCC 19606]
gi|301345633|ref|ZP_07226374.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AB056]
gi|301512780|ref|ZP_07238017.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AB058]
gi|301596291|ref|ZP_07241299.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AB059]
gi|169149991|emb|CAM87885.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii AYE]
gi|193076530|gb|ABO11186.2| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
baumannii ATCC 17978]
gi|213055689|gb|ACJ40591.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii AB0057]
gi|213987168|gb|ACJ57467.1| ribonucleotide-diphosphate reductase small chain [Acinetobacter
baumannii AB307-0294]
gi|260410554|gb|EEX03852.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii ATCC 19606]
Length = 427
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 222/351 (63%), Positives = 281/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 77 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPE 256
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 317 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|260551040|ref|ZP_05825245.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
sp. RUH2624]
gi|260405988|gb|EEW99475.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
sp. RUH2624]
Length = 427
Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats.
Identities = 222/351 (63%), Positives = 281/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 77 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPE 256
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 317 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|325272776|ref|ZP_08139120.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
TJI-51]
gi|324102083|gb|EGB99585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas sp.
TJI-51]
Length = 416
Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 277/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 65 LDVAEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQ
Sbjct: 125 MTADIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQ 184
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVE 244
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 304
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 365 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|77460516|ref|YP_350023.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
fluorescens Pf0-1]
gi|77384519|gb|ABA76032.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas
fluorescens Pf0-1]
Length = 416
Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats.
Identities = 215/352 (61%), Positives = 276/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 65 LDVAEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQ
Sbjct: 125 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQ 184
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVE 244
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 304
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAEMKEEASQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 365 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|50083944|ref|YP_045454.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
sp. ADP1]
gi|49529920|emb|CAG67632.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
sp. ADP1]
Length = 427
Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats.
Identities = 221/351 (62%), Positives = 281/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL I+ G RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 77 LDITAGLQEIETGAARVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER+++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERVIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQ 196
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YTQ+LS P F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVARKAAWGLKYTQSLSDPKFETGTPE 256
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ+ L++L FY V EG++FY GF QILS+GR NKM G++EQ+QYI+RDES+H+NFGID
Sbjct: 257 TDQQLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVSEQFQYILRDESMHVNFGID 316
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT EFQQ+ M+ E TLLEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 317 MINQIKIENPHLWTAEFQQEVIQMIVEGTLLEIEYARDTMPRGVLGMNAAMMEEYLKFIC 376
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL ++ NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 377 NRRLAQLGLPEQYRGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|289208615|ref|YP_003460681.1| ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix]
gi|288944246|gb|ADC71945.1| Ribonucleoside-diphosphate reductase [Thioalkalivibrio sp. K90mix]
Length = 412
Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats.
Identities = 225/350 (64%), Positives = 288/350 (82%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
TGL ++ G +R+ VDDK+++N +D+NQL+P KY WAW+KYL C NHWMP E+ M
Sbjct: 63 TGTGLEDLEMGAERIRVDDKKIINCHADLNQLVPFKYKWAWQKYLDGCANHWMPQEINMN 122
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D+ALWK NGLT+DER ++KRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAF
Sbjct: 123 ADIALWKDPNGLTEDERTIVKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAF 182
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
EEA+H+H +QY + SLGLDEGE+FNMYREVPS+ KA WAL +T+ L+ P+F TGT +AD
Sbjct: 183 EEALHTHAYQYCVESLGLDEGEIFNMYREVPSVATKAEWALPFTKHLADPNFRTGTPEAD 242
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
Q+ L++L FYVVFEG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGIDVI
Sbjct: 243 QKLLRELIAFYVVFEGIFFYVGFVQILSMGRRNKMTGVAEQFQYILRDESMHMNFGIDVI 302
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
NQIK+ENPHLWT+EF+ + RT++ +A LE YA +TMP+G +G+NA E+Y+ FIANR
Sbjct: 303 NQIKVENPHLWTEEFKNEMRTLISDAVELEAQYARDTMPRGVLGMNAQMFEEYLHFIANR 362
Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RC QIGL ++ +NPFPWMSEV+DLKKEKNFFETRVTEYQ G L WD
Sbjct: 363 RCAQIGLAEMYPGADNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 412
>gi|184157022|ref|YP_001845361.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ACICU]
gi|183208616|gb|ACC56014.1| Ribonucleotide reductase, beta subunit [Acinetobacter baumannii
ACICU]
Length = 427
Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats.
Identities = 222/351 (63%), Positives = 281/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 77 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPE 256
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 317 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|297538242|ref|YP_003674011.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301]
gi|297257589|gb|ADI29434.1| Ribonucleoside-diphosphate reductase [Methylotenera sp. 301]
Length = 376
Score = 344 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 212/352 (60%), Positives = 270/352 (76%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ + T + + RVN DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV
Sbjct: 25 IKSATAAANQPSHSGRVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVS 84
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+A WK L+DDERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQ
Sbjct: 85 MSRDIAQWKDSTALSDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQ 144
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
FEEA+H+H +QYI+ SLGLDE E+FN Y+E+PSI AK ++ + + TL+ P+F TGT +
Sbjct: 145 GFEEAIHTHAYQYIVESLGLDESEVFNAYQEIPSIKAKDDFLIPFINTLTDPAFKTGTAE 204
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
ADQE L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID
Sbjct: 205 ADQELLRSLIVFACIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGID 264
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VIN IK+ENPHLWT EF+++ +T++ + LE YA TMP+G +GLNA ++Y++FIA
Sbjct: 265 VINTIKLENPHLWTAEFREEIKTLMQKGVELEYQYAEATMPRGVLGLNATMFKEYLRFIA 324
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRRC QIGL+ L+ NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD
Sbjct: 325 NRRCTQIGLDVLYPGATNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 376
>gi|78065156|ref|YP_367925.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
383]
gi|77965901|gb|ABB07281.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. 383]
Length = 403
Score = 344 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 215/344 (62%), Positives = 269/344 (78%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW
Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|254253304|ref|ZP_04946622.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
dolosa AUO158]
gi|124895913|gb|EAY69793.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
dolosa AUO158]
Length = 403
Score = 344 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 217/344 (63%), Positives = 269/344 (78%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW
Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIG
Sbjct: 300 NPHLWTPEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 359
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|253997287|ref|YP_003049351.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8]
gi|253983966|gb|ACT48824.1| Ribonucleoside-diphosphate reductase [Methylotenera mobilis JLW8]
Length = 377
Score = 344 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 209/339 (61%), Positives = 260/339 (76%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
RVN DKRM+N ++DVNQL+P KY WAW+KYL+ C NHWMP EV M D+A WK
Sbjct: 39 SGRVNASDKRMINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEVSMSRDIAQWKDSTA 98
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LTDDERL++KRNLGFF +++SL ANNIVL YRH++ PE RQYLLRQ FEEA+H+H +QY
Sbjct: 99 LTDDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPEARQYLLRQGFEEAIHTHAYQY 158
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDE E+FN Y+EV SI K ++ + + TL++P F TGT +ADQ+ L+ L VF
Sbjct: 159 IVESLGLDESEVFNAYQEVASIKDKDDFLIPFINTLTNPEFKTGTAEADQQLLRSLIVFA 218
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVIN IK+ENPHLW
Sbjct: 219 CIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDVINTIKLENPHLW 278
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + + ++ LE YA TMP+G +GLNA ++Y++FIANRRC QIGL+ L+
Sbjct: 279 TAEFRDEIKGLIQHGVELEYRYAEATMPRGVLGLNATMFKEYLRFIANRRCQQIGLDVLY 338
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+ NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD
Sbjct: 339 QGATNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 377
>gi|254282900|ref|ZP_04957868.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
proteobacterium NOR51-B]
gi|219679103|gb|EED35452.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
proteobacterium NOR51-B]
Length = 421
Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats.
Identities = 215/352 (61%), Positives = 279/352 (79%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV
Sbjct: 70 LDVAPGLEELEMGAQRVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVN 129
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+A WKS +GLT+DER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQ
Sbjct: 130 MTADVATWKSSDGLTEDERRIVLRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQ 189
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEG +FNMYREVPS+ KA W+L +T +LS P+F TGT +
Sbjct: 190 AFEEAIHTHAYQYCIESLGMDEGAVFNMYREVPSVARKATWSLSHTHSLSDPNFKTGTVE 249
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ+ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 250 TDQQLLRNLVGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 309
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIK+ENPHLWT EFQ++ M+ E T LEI YA +TMP+G +G+NA E+Y+QFI
Sbjct: 310 VINQIKLENPHLWTAEFQEEVVQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIC 369
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR +Q+GL + +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD
Sbjct: 370 NRRLNQLGLSEQYPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 421
>gi|312960686|ref|ZP_07775192.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens WH6]
gi|311285212|gb|EFQ63787.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens WH6]
Length = 416
Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats.
Identities = 216/352 (61%), Positives = 277/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 65 LDVAEGLAELEGASARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 125 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 184
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D
Sbjct: 185 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVD 244
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDKELLRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 304
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 365 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|209521089|ref|ZP_03269819.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160]
gi|209498472|gb|EDZ98597.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. H160]
Length = 411
Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats.
Identities = 216/337 (64%), Positives = 265/337 (78%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT
Sbjct: 75 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNGLT 134
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 135 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 194
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
SLGLDEGE+FN Y EVPSI AK + + Y L+ P+F TGT +ADQ L+ L VF V
Sbjct: 195 ESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFACV 254
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLWT
Sbjct: 255 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 314
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+PL+
Sbjct: 315 EFRAEIRAIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLYPN 374
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 375 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411
>gi|28868867|ref|NP_791486.1| ribonucleoside-diphosphate reductase subunit beta [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213969520|ref|ZP_03397656.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
syringae pv. tomato T1]
gi|301385974|ref|ZP_07234392.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. tomato Max13]
gi|302058701|ref|ZP_07250242.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. tomato K40]
gi|302134408|ref|ZP_07260398.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|28852106|gb|AAO55181.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213925616|gb|EEB59175.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
syringae pv. tomato T1]
gi|330960626|gb|EGH60886.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. maculicola str. ES4326]
gi|331016758|gb|EGH96814.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 415
Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats.
Identities = 215/352 (61%), Positives = 275/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWK GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVD 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|226953559|ref|ZP_03824023.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC
27244]
gi|294649451|ref|ZP_06726876.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter
haemolyticus ATCC 19194]
gi|226835696|gb|EEH68079.1| ribonucleotide reductase, beta subunit [Acinetobacter sp. ATCC
27244]
gi|292824656|gb|EFF83434.1| ribonucleotide-diphosphate reductase beta subunit [Acinetobacter
haemolyticus ATCC 19194]
Length = 427
Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats.
Identities = 223/351 (63%), Positives = 280/351 (79%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 77 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER +I R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIIMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFHTGTPE 256
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQILLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT FQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 317 MINQIKIENPHLWTATFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 377 NRRLAQLGLPEQFAGVTNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|295677726|ref|YP_003606250.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002]
gi|295437569|gb|ADG16739.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1002]
Length = 411
Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats.
Identities = 216/337 (64%), Positives = 265/337 (78%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT
Sbjct: 75 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNGLT 134
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 135 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 194
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
SLGLDEGE+FN Y EVPSI AK + + Y L+ P+F TGT +ADQ L+ L VF V
Sbjct: 195 ESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFACV 254
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLWT
Sbjct: 255 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 314
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+PL+
Sbjct: 315 EFRAEIRAIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLYPN 374
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 375 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 411
>gi|170720377|ref|YP_001748065.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida W619]
gi|169758380|gb|ACA71696.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida W619]
Length = 416
Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 277/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 65 LDIAEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQ
Sbjct: 125 MTADIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQ 184
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVE 244
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 304
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 365 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|169634186|ref|YP_001707922.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii SDF]
gi|169152978|emb|CAP02026.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii]
Length = 427
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 222/351 (63%), Positives = 281/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 77 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPE 256
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 317 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|262373382|ref|ZP_06066661.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
junii SH205]
gi|262313407|gb|EEY94492.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
junii SH205]
Length = 427
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 222/351 (63%), Positives = 282/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 77 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+ KA+W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKASWGLKYTQSLSDPTFHTGTPE 256
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 317 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|171318520|ref|ZP_02907672.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5]
gi|171096306|gb|EDT41212.1| Ribonucleoside-diphosphate reductase [Burkholderia ambifaria MEX-5]
Length = 403
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 215/344 (62%), Positives = 269/344 (78%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW
Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|94312018|ref|YP_585228.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus
metallidurans CH34]
gi|93355870|gb|ABF09959.1| Ribonucleoside-diphosphate reductase beta subunit [Cupriavidus
metallidurans CH34]
Length = 395
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 211/339 (62%), Positives = 260/339 (76%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG
Sbjct: 57 TRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 116
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QY
Sbjct: 117 LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQY 176
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 177 IVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFA 236
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLW
Sbjct: 237 CIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLW 296
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGL+ LF
Sbjct: 297 TAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDQLF 356
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 357 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395
>gi|327480258|gb|AEA83568.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri DSM 4166]
Length = 415
Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats.
Identities = 218/352 (61%), Positives = 282/352 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+KRM+NAR+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDVREGLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQ
Sbjct: 124 MNADIALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMY EVPS+ KA+W L+YT+++S P+F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEVPSVAKKASWGLKYTRSISDPTFQTGTPE 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D++FL++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKQFLKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLW E + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 304 MINQIKIENPHLWNAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 364 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|262369327|ref|ZP_06062655.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
johnsonii SH046]
gi|262315395|gb|EEY96434.1| ribonucleotide-diphosphate reductase small subunit [Acinetobacter
johnsonii SH046]
Length = 427
Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats.
Identities = 221/351 (62%), Positives = 281/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 77 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFQTGTPE 256
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQILLRNLIAFYCVLEGIFFYCGFSQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENP LWT EFQ++ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 317 MINQIKIENPSLWTAEFQEEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFIC 376
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 377 NRRLAQLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|66046950|ref|YP_236791.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. syringae B728a]
gi|237798938|ref|ZP_04587399.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|237806191|ref|ZP_04592895.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|63257657|gb|AAY38753.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv.
syringae B728a]
gi|330980156|gb|EGH78342.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|331021792|gb|EGI01849.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331027304|gb|EGI07359.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 415
Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats.
Identities = 215/352 (61%), Positives = 276/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVD 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|134294683|ref|YP_001118418.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
vietnamiensis G4]
gi|134137840|gb|ABO53583.1| Ribonucleoside-diphosphate reductase [Burkholderia vietnamiensis
G4]
Length = 403
Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats.
Identities = 215/344 (62%), Positives = 268/344 (77%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW
Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NPHLWT EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKHAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|26987912|ref|NP_743337.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida KT2440]
gi|167035231|ref|YP_001670462.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
putida GB-1]
gi|24982621|gb|AAN66801.1|AE016309_3 ribonucleoside reductase, beta subunit [Pseudomonas putida KT2440]
gi|166861719|gb|ABZ00127.1| Ribonucleoside-diphosphate reductase [Pseudomonas putida GB-1]
gi|313497534|gb|ADR58900.1| NrdB [Pseudomonas putida BIRD-1]
Length = 416
Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 277/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 65 LDVAEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS++GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQ
Sbjct: 125 MTADIALWKSQDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQ 184
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVE 244
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 304
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 365 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|92112799|ref|YP_572727.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter
salexigens DSM 3043]
gi|91795889|gb|ABE58028.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens
DSM 3043]
Length = 420
Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats.
Identities = 220/352 (62%), Positives = 285/352 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL NHWMP EV
Sbjct: 69 LDVAAGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVN 128
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS +GLT+DER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ
Sbjct: 129 MNADIALWKSNDGLTEDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQ 188
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY + SLG+DEGE+FNMYREVPS+ AK+ W+L++TQ+L+ P F TGT +
Sbjct: 189 AFEEAIHTHAYQYCVESLGMDEGEVFNMYREVPSVAAKSAWSLKHTQSLARPDFHTGTPE 248
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQE L++L FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D
Sbjct: 249 TDQELLRNLIAFYCVTEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVD 308
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT EFQ + M+ E T LEIAYA ++MP+G +G+NA E+Y+ FI
Sbjct: 309 MINQIKIENPHLWTPEFQDEVTQMIIEGTELEIAYARDSMPRGVLGMNAAIMEEYLHFIC 368
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + ENPFPWMSE+IDL+KEKNFFETRVTEYQ G L WD
Sbjct: 369 NRRLAQIGLKEQYPGAENPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 420
>gi|262280153|ref|ZP_06057938.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
calcoaceticus RUH2202]
gi|262260504|gb|EEY79237.1| ribonucleoside-diphosphate reductase beta subunit [Acinetobacter
calcoaceticus RUH2202]
Length = 427
Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats.
Identities = 221/351 (62%), Positives = 281/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 77 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNLDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPE 256
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLW+ EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 317 MINQIKIENPHLWSAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|189349324|ref|YP_001944952.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
multivorans ATCC 17616]
gi|221213238|ref|ZP_03586213.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans CGD1]
gi|189333346|dbj|BAG42416.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
multivorans ATCC 17616]
gi|221166690|gb|EED99161.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans CGD1]
Length = 403
Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats.
Identities = 217/344 (63%), Positives = 269/344 (78%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW
Sbjct: 60 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 359
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|170695324|ref|ZP_02886470.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M]
gi|170139724|gb|EDT07906.1| Ribonucleoside-diphosphate reductase [Burkholderia graminis C4D1M]
Length = 414
Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats.
Identities = 215/339 (63%), Positives = 263/339 (77%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG
Sbjct: 76 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 135
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 136 LTEDERRVVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 195
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P F TGT + DQ L+ L VF
Sbjct: 196 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYINVLTDPGFKTGTLETDQTLLRSLIVFA 255
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 256 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 315
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+PL+
Sbjct: 316 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 375
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 376 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 414
>gi|330880140|gb|EGH14289.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. morsprunorum str. M302280PT]
gi|330966559|gb|EGH66819.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. actinidiae str. M302091]
Length = 415
Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats.
Identities = 215/352 (61%), Positives = 275/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWK GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKDPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT D
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVD 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|332852155|ref|ZP_08433982.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii 6013150]
gi|332867554|ref|ZP_08437707.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii 6013113]
gi|332729527|gb|EGJ60866.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii 6013150]
gi|332733971|gb|EGJ65116.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii 6013113]
Length = 440
Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats.
Identities = 222/351 (63%), Positives = 281/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 90 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 149
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 150 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 209
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT +
Sbjct: 210 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPE 269
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 270 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 329
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 330 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 389
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 390 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 440
>gi|113869188|ref|YP_727677.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
eutropha H16]
gi|113527964|emb|CAJ94309.1| Ribonucleoside-diphosphate reductase beta subunit [Ralstonia
eutropha H16]
Length = 395
Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats.
Identities = 211/338 (62%), Positives = 260/338 (76%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL
Sbjct: 58 RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 117
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 118 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 177
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 178 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 237
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 238 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 297
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGL+ LF
Sbjct: 298 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQIGLDQLFP 357
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 358 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 395
>gi|104780527|ref|YP_607025.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
entomophila L48]
gi|95109514|emb|CAK14215.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
entomophila L48]
Length = 415
Score = 342 bits (877), Expect = 4e-92, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 276/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDIAEGLAELEGSSARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS +GLT+DER ++ RNLGFF++++SLVANN+ LA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKSMDGLTEDERRIVMRNLGFFSTADSLVANNLALAVYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA W L+YT+ +S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKAAWGLKYTRAISDPEFNTGTVE 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAAMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 364 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|90022104|ref|YP_527931.1| ribonucleotide-diphosphate reductase subunit beta [Saccharophagus
degradans 2-40]
gi|89951704|gb|ABD81719.1| Class Ia ribonucleoside-diphosphate reductase beta subunit
[Saccharophagus degradans 2-40]
Length = 423
Score = 342 bits (877), Expect = 4e-92, Method: Composition-based stats.
Identities = 221/352 (62%), Positives = 285/352 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
M GL ++ G +R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 72 MDPTLGLEELEIGAERIEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 131
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+A WKS +GL++DER +I R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQ
Sbjct: 132 MTADVATWKSPDGLSEDERRIIMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQ 191
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P+F TGT +
Sbjct: 192 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSIAHTQGMSDPTFKTGTPE 251
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
ADQE L++L FYV+ EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 252 ADQELLRNLIGFYVITEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 311
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIK+ENPHLWT+EFQ +++ M+ E T LEIAYA +TMP+G +G+NA E+Y+ FIA
Sbjct: 312 VINQIKLENPHLWTEEFQAETKQMILEGTELEIAYARDTMPRGVLGMNAAMMEEYLHFIA 371
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR Q+GL + +NPFPWMSE++DL+KEKNFFETRV EYQ G L W+
Sbjct: 372 NRRMAQLGLAEAYPGAKNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWE 423
>gi|229590245|ref|YP_002872364.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
fluorescens SBW25]
gi|229362111|emb|CAY49013.1| putative ribonucleoside-diphosphate reductase beta chain
[Pseudomonas fluorescens SBW25]
Length = 416
Score = 342 bits (877), Expect = 4e-92, Method: Composition-based stats.
Identities = 215/352 (61%), Positives = 277/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 65 LDVAEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 125 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 184
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVE 244
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDKELLRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 304
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 365 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|229592166|ref|YP_002874285.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
fluorescens SBW25]
gi|229364032|emb|CAY51597.1| ribonucleoside-diphosphate reductase beta chain [Pseudomonas
fluorescens SBW25]
Length = 416
Score = 342 bits (877), Expect = 4e-92, Method: Composition-based stats.
Identities = 215/352 (61%), Positives = 277/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+KRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 65 LDVAEGLAELEGSAARVAVDEKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 125 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 184
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVE 244
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDKELLRNLVAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 304
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 365 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|332872596|ref|ZP_08440564.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii 6014059]
gi|332739125|gb|EGJ69984.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
baumannii 6014059]
Length = 440
Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats.
Identities = 222/351 (63%), Positives = 281/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 90 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 149
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 150 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 209
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT +
Sbjct: 210 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPE 269
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 270 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 329
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 330 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 389
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 390 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 440
>gi|302525965|ref|ZP_07278307.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. AA4]
gi|302434860|gb|EFL06676.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. AA4]
Length = 357
Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats.
Identities = 260/351 (74%), Positives = 297/351 (84%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ TGL I+ G R+NVDDKRM+NAR+DVNQLLP+KY WAW+KYL+ACNNHWMPTEV M
Sbjct: 7 TDATGLGEIEVGAARINVDDKRMINARADVNQLLPMKYRWAWDKYLAACNNHWMPTEVAM 66
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
Q D+ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQA
Sbjct: 67 QADIALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQA 126
Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
FEEAVH+HTFQYI SLGL EGELFNMYREVPSI+ K WAL+YTQ L +P F TGT +A
Sbjct: 127 FEEAVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEA 186
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
DQ FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID
Sbjct: 187 DQAFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDC 246
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
INQIKIENPHLWT+EFQ + R ML EA LE+ YA +TMP+G +GL+A CEQYM FI +
Sbjct: 247 INQIKIENPHLWTEEFQAEVRGMLQEACELEVKYARDTMPRGMLGLSADLCEQYMHFITD 306
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RR QIGL P++ ENPFPWMSE +DLKKEKNFFETRV EYQ G L WD
Sbjct: 307 RRAQQIGLPPIYGENENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 357
>gi|71737432|ref|YP_275887.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|257485935|ref|ZP_05639976.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. tabaci ATCC 11528]
gi|289628680|ref|ZP_06461634.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. aesculi str. NCPPB3681]
gi|289648392|ref|ZP_06479735.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. aesculi str. 2250]
gi|298487941|ref|ZP_07005980.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|302184861|ref|ZP_07261534.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. syringae 642]
gi|71557985|gb|AAZ37196.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298157492|gb|EFH98573.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|330866023|gb|EGH00732.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330896997|gb|EGH28545.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. japonica str. M301072PT]
gi|330986742|gb|EGH84845.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|331010341|gb|EGH90397.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. tabaci ATCC 11528]
Length = 415
Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 276/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVE 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|332530699|ref|ZP_08406630.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella
gracilis ATCC 19624]
gi|332039867|gb|EGI76262.1| ribonucleotide-diphosphate reductase subunit beta [Hylemonella
gracilis ATCC 19624]
Length = 399
Score = 342 bits (876), Expect = 6e-92, Method: Composition-based stats.
Identities = 206/340 (60%), Positives = 257/340 (75%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
G R+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK N
Sbjct: 60 GTHRIKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPN 119
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
GL++DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +Q
Sbjct: 120 GLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 179
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
YI+ SLGLDE E+F+ Y EV SI K + L + + P+F TGT + DQ L+ L VF
Sbjct: 180 YIVESLGLDESEIFSAYLEVQSIRDKDEFLLPFINAIMDPNFHTGTLETDQTLLKSLIVF 239
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP L
Sbjct: 240 ACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQL 299
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
WT EF+ + R + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE L
Sbjct: 300 WTPEFKAEIRGLFEKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEAL 359
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
F ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 360 FPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 399
>gi|254516739|ref|ZP_05128798.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
proteobacterium NOR5-3]
gi|219675162|gb|EED31529.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
proteobacterium NOR5-3]
Length = 441
Score = 342 bits (876), Expect = 6e-92, Method: Composition-based stats.
Identities = 219/352 (62%), Positives = 280/352 (79%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G RV++D+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV
Sbjct: 90 LDVAAGLEELEMGAARVSIDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVN 149
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+A WK+ GLTDDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ
Sbjct: 150 MTADVATWKNPEGLTDDERRIILRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQ 209
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W+L +T LS P+F TGT +
Sbjct: 210 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSLSHTHELSDPNFNTGTME 269
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 270 SDQTLLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 329
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIK+ENPHLWT+EF+Q++ M+ E T LEI YA +TMP+G +G+NA E+Y+QFIA
Sbjct: 330 VINQIKLENPHLWTEEFKQEAIQMILEGTQLEIEYARDTMPRGVLGMNAAMMEEYLQFIA 389
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD
Sbjct: 390 NRRLSQIGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 441
>gi|323527395|ref|YP_004229548.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001]
gi|323384397|gb|ADX56488.1| Ribonucleoside-diphosphate reductase [Burkholderia sp. CCGE1001]
Length = 414
Score = 342 bits (876), Expect = 6e-92, Method: Composition-based stats.
Identities = 216/339 (63%), Positives = 265/339 (78%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG
Sbjct: 76 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKDPNG 135
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 136 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 195
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EVPSI AK + + Y L+ P+F TGT +ADQ L+ L VF
Sbjct: 196 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPYIHVLTDPAFKTGTLEADQTLLRSLIVFA 255
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 256 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLW 315
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+PL+
Sbjct: 316 TAEFRAEIREIFQQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLY 375
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 376 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALTWE 414
>gi|325519933|gb|EGC99191.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia sp.
TJI49]
Length = 403
Score = 342 bits (876), Expect = 6e-92, Method: Composition-based stats.
Identities = 218/351 (62%), Positives = 271/351 (77%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M
Sbjct: 53 APQASAVPAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINM 112
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA
Sbjct: 113 SRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 172
Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
FEEA+H+H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +A
Sbjct: 173 FEEAIHTHAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEA 232
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
DQ+ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+
Sbjct: 233 DQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 292
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
INQIK+ENPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+N
Sbjct: 293 INQIKLENPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISN 352
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RRC QIGL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 353 RRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|221202418|ref|ZP_03575450.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans CGD2M]
gi|221208122|ref|ZP_03581127.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans CGD2]
gi|221172025|gb|EEE04467.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans CGD2]
gi|221177695|gb|EEE10110.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
multivorans CGD2M]
Length = 372
Score = 342 bits (876), Expect = 7e-92, Method: Composition-based stats.
Identities = 217/344 (63%), Positives = 269/344 (78%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW
Sbjct: 29 PAGGSEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 88
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 89 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 148
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H +QYI+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+
Sbjct: 149 HAYQYIVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 208
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 209 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 268
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIG
Sbjct: 269 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIG 328
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 329 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372
>gi|332526550|ref|ZP_08402662.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax
benzoatilyticus JA2]
gi|332110818|gb|EGJ10995.1| ribonucleotide-diphosphate reductase subunit beta [Rubrivivax
benzoatilyticus JA2]
Length = 385
Score = 341 bits (875), Expect = 7e-92, Method: Composition-based stats.
Identities = 210/354 (59%), Positives = 264/354 (74%), Gaps = 5/354 (1%)
Query: 4 NTGLSPIQAG-----EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTE 58
T SP+ +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E
Sbjct: 32 ATNASPVSRPAATAHTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQE 91
Query: 59 VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118
V M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LL
Sbjct: 92 VNMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLL 151
Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
RQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I K + + + + P+F+TGT
Sbjct: 152 RQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRDKDEFLIPFIDAIMDPAFSTGT 211
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
+ADQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFG
Sbjct: 212 PEADQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFG 271
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
ID+INQIK+ENP LWT F+ + R + A LE YA +TMP+G +G+NA + Y+++
Sbjct: 272 IDLINQIKLENPQLWTPAFKAEIRALFERAVELEYRYAEDTMPRGVLGMNASMFKGYLRY 331
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
IANRR QIGLE LF ENPFPWMSE+IDLKKE+NFFETRV +YQ G L WD
Sbjct: 332 IANRRATQIGLEALFPNEENPFPWMSEMIDLKKERNFFETRVIDYQSGGALSWD 385
>gi|170731918|ref|YP_001763865.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
cenocepacia MC0-3]
gi|169815160|gb|ACA89743.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia
MC0-3]
Length = 403
Score = 341 bits (875), Expect = 7e-92, Method: Composition-based stats.
Identities = 215/344 (62%), Positives = 269/344 (78%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW
Sbjct: 60 PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 360 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|299771426|ref|YP_003733452.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
sp. DR1]
gi|298701514|gb|ADI92079.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
sp. DR1]
Length = 427
Score = 341 bits (875), Expect = 7e-92, Method: Composition-based stats.
Identities = 221/351 (62%), Positives = 281/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 77 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNLDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPE 256
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLW+ EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 317 MINQIKIENPHLWSAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 376
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 377 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|107021673|ref|YP_620000.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
cenocepacia AU 1054]
gi|116688619|ref|YP_834242.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
cenocepacia HI2424]
gi|105891862|gb|ABF75027.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia AU
1054]
gi|116646708|gb|ABK07349.1| Ribonucleoside-diphosphate reductase [Burkholderia cenocepacia
HI2424]
Length = 382
Score = 341 bits (875), Expect = 8e-92, Method: Composition-based stats.
Identities = 215/344 (62%), Positives = 269/344 (78%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW
Sbjct: 39 PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 98
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 99 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 158
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+
Sbjct: 159 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 218
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 219 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 278
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG
Sbjct: 279 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 338
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L+PL+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 339 LDPLYPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 382
>gi|207744360|ref|YP_002260752.1| transmembrane ribonucleoside reductase (small chain) protein
[Ralstonia solanacearum IPO1609]
gi|206595765|emb|CAQ62692.1| transmembrane ribonucleoside reductase (small chain) protein
[Ralstonia solanacearum IPO1609]
Length = 410
Score = 341 bits (875), Expect = 8e-92, Method: Composition-based stats.
Identities = 213/338 (63%), Positives = 261/338 (77%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL
Sbjct: 73 RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 132
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 133 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 192
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 193 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 252
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 253 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 312
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGLEPLF
Sbjct: 313 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQIGLEPLFP 372
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 373 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 410
>gi|206561765|ref|YP_002232530.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
cenocepacia J2315]
gi|254246390|ref|ZP_04939711.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
cenocepacia PC184]
gi|124871166|gb|EAY62882.1| ribonucleotide-diphosphate reductase beta subunit [Burkholderia
cenocepacia PC184]
gi|198037807|emb|CAR53751.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
cenocepacia J2315]
Length = 403
Score = 341 bits (875), Expect = 8e-92, Method: Composition-based stats.
Identities = 216/344 (62%), Positives = 269/344 (78%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALW
Sbjct: 60 PAGGTEARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALW 119
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 120 KDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 179
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H +QYI+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+
Sbjct: 180 HAYQYIVESLGLDEGEIFNAYHEVTSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKS 239
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+E
Sbjct: 240 LIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLE 299
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NPHLWT EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI+NRRC QIG
Sbjct: 300 NPHLWTAEFRAEIRELFKQAVELEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIG 359
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 360 LDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|300703002|ref|YP_003744604.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like
[Ralstonia solanacearum CFBP2957]
gi|299070665|emb|CBJ41960.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Ralstonia solanacearum CFBP2957]
Length = 402
Score = 341 bits (875), Expect = 8e-92, Method: Composition-based stats.
Identities = 214/338 (63%), Positives = 261/338 (77%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL
Sbjct: 65 RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 124
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ SLGLDE E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 185 VESLGLDEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 245 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 304
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGLEPLF
Sbjct: 305 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQIGLEPLFP 364
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402
>gi|83746810|ref|ZP_00943858.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia
solanacearum UW551]
gi|207721465|ref|YP_002251905.1| transmembrane ribonucleoside reductase (small chain) protein
[Ralstonia solanacearum MolK2]
gi|83726579|gb|EAP73709.1| Ribonucleoside-diphosphate reductase beta chain [Ralstonia
solanacearum UW551]
gi|206586625|emb|CAQ17211.1| transmembrane ribonucleoside reductase (small chain) protein
[Ralstonia solanacearum MolK2]
Length = 402
Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats.
Identities = 213/338 (63%), Positives = 261/338 (77%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL
Sbjct: 65 RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 124
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 185 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 245 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 304
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGLEPLF
Sbjct: 305 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQIGLEPLFP 364
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 402
>gi|73542624|ref|YP_297144.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
eutropha JMP134]
gi|72120037|gb|AAZ62300.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134]
Length = 394
Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats.
Identities = 210/338 (62%), Positives = 259/338 (76%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+A WK NGL
Sbjct: 57 RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIATWKDPNGL 116
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 117 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 176
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 177 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 236
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 237 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 296
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGL+ LF
Sbjct: 297 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQIGLDQLFP 356
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 357 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 394
>gi|324998522|ref|ZP_08119634.1| ribonucleoside-diphosphate reductase beta chain [Pseudonocardia sp.
P1]
Length = 358
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 254/350 (72%), Positives = 298/350 (85%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
+ TGL I G ++ DDKRM+NAR+DVNQLLPLKY WAW+KYL+ C+NHWMPTEV MQ
Sbjct: 9 DTTGLGEIDRGAAPIDADDKRMINARADVNQLLPLKYHWAWDKYLAGCSNHWMPTEVAMQ 68
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D+ALW+S++GLTDDERLM+ RNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQ+F
Sbjct: 69 ADIALWRSRDGLTDDERLMLTRNLGFFATAESLVANNVVLAVYRHLTNPECRQYLLRQSF 128
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
EEAVH+HTFQY+ SLGLDEGELFN YR+VPSIT K WAL+YTQ LS P F TGT + D
Sbjct: 129 EEAVHTHTFQYVCESLGLDEGELFNAYRQVPSITDKDAWALRYTQALSDPDFCTGTPEND 188
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
+ FL+DL FYVVFEGMWFYTGFAQIL+LGR NKMVG+AEQYQYI+RDES+HLNFGID I
Sbjct: 189 RAFLRDLVAFYVVFEGMWFYTGFAQILALGRRNKMVGVAEQYQYILRDESIHLNFGIDCI 248
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
NQIKIENPHLWT+EF + R MLHEA LE+AYA +TMP+G +GL A SCEQY++FI +R
Sbjct: 249 NQIKIENPHLWTEEFAAEIRAMLHEACELEVAYARDTMPRGMLGLTAESCEQYLRFITDR 308
Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
R QIGL PLF +NPFPWMSE +DL+KEKNFFETRVTEY+ G L+WD
Sbjct: 309 RAEQIGLAPLFGQADNPFPWMSEAMDLRKEKNFFETRVTEYRTGGSLEWD 358
>gi|300784783|ref|YP_003765074.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
mediterranei U32]
gi|299794297|gb|ADJ44672.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
mediterranei U32]
Length = 357
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 261/351 (74%), Positives = 297/351 (84%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ TGL I+ G R+NVDDKRM+NAR+DVNQLLP+KY WAWEKYL+ CNNHWMPTEV M
Sbjct: 7 TDATGLGEIEVGAARINVDDKRMINARADVNQLLPMKYKWAWEKYLAGCNNHWMPTEVAM 66
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
Q D+ALWKS +GLT+DER M+KRNLGFFA++ESLVANNIVLA+YR ++NPECRQYLLRQA
Sbjct: 67 QADIALWKSPDGLTEDERQMLKRNLGFFATAESLVANNIVLAVYRQITNPECRQYLLRQA 126
Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
FEEAVH+HTFQYI SLGL EGELFNMYREVPSI+ K WAL+YTQ L +P F TGT +A
Sbjct: 127 FEEAVHTHTFQYICESLGLVEGELFNMYREVPSISDKDAWALKYTQNLENPDFETGTPEA 186
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
DQ FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID
Sbjct: 187 DQAFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDC 246
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
INQIKIENPHLWT+EFQ + R ML EA LE+ YA +TMP+G +GL+A CEQYM F+ +
Sbjct: 247 INQIKIENPHLWTEEFQAEVRGMLKEACELEVKYARDTMPRGMLGLSAQLCEQYMHFVTD 306
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RR QIGL P+F TENPFPWMSE +DLKKEKNFFETRV EYQ G L WD
Sbjct: 307 RRAQQIGLAPIFGETENPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 357
>gi|320323423|gb|EFW79511.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. glycinea str. B076]
gi|320327620|gb|EFW83632.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330876273|gb|EGH10422.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. glycinea str. race 4]
Length = 415
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 277/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C+NHWMP EV
Sbjct: 64 LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVE 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|255318309|ref|ZP_05359544.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
radioresistens SK82]
gi|262379054|ref|ZP_06072210.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
radioresistens SH164]
gi|255304621|gb|EET83803.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
radioresistens SK82]
gi|262298511|gb|EEY86424.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
radioresistens SH164]
Length = 427
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 223/351 (63%), Positives = 282/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 77 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 136
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 137 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 196
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+LS P+F TGT +
Sbjct: 197 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLSDPTFKTGTPE 256
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 257 NDQILLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 316
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 317 MINQIKIENPHLWTAEFQQEIIQMILEGTMLEIEYARDTMPRGVLGMNAAMMEEYLKFIC 376
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR +Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 377 NRRLNQLGLPEQFAGVNNPFQWMSEMMDLRKEKNFFETRVTDYQTGGALSW 427
>gi|226227154|ref|YP_002761260.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas
aurantiaca T-27]
gi|226090345|dbj|BAH38790.1| ribonucleoside-diphosphate reductase beta subunit [Gemmatimonas
aurantiaca T-27]
Length = 371
Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats.
Identities = 269/349 (77%), Positives = 297/349 (85%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
TGL I RV VDDK M+N R+DVNQLLPLKY WAWEKYLS CNNHWMPTEV MQ
Sbjct: 23 ATGLGEIDRHGGRVRVDDKAMINCRADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSMQA 82
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
DLA+W+S++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAFE
Sbjct: 83 DLAIWRSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAFE 142
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EA+H+HTFQYI SLGLDEGELFNMYREVPSITAKA WAL+YTQ L+ P F+TGT + DQ
Sbjct: 143 EAIHTHTFQYICESLGLDEGELFNMYREVPSITAKAAWALKYTQHLADPGFSTGTPETDQ 202
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVIN
Sbjct: 203 AFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVIN 262
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIK+ENPHLW+ FQ++ R ML EA LE+AY +TMP+GF+GLNA CE YM FI NRR
Sbjct: 263 QIKVENPHLWSAAFQEEVRQMLAEACELEVAYGRDTMPRGFLGLNAALCETYMHFITNRR 322
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
C Q+GL P+F T+NPFPWMSE IDLKKEKNFFETRV EYQ G LKWD
Sbjct: 323 CAQLGLAPVFPETDNPFPWMSEAIDLKKEKNFFETRVIEYQNGGALKWD 371
>gi|121598515|ref|YP_991780.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
mallei SAVP1]
gi|124385654|ref|YP_001027273.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
mallei NCTC 10229]
gi|126439848|ref|YP_001060484.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 668]
gi|126451145|ref|YP_001082790.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
mallei NCTC 10247]
gi|126453692|ref|YP_001067748.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 1106a]
gi|134280207|ref|ZP_01766918.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 305]
gi|166998593|ref|ZP_02264451.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei PRL-20]
gi|167721297|ref|ZP_02404533.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei DM98]
gi|167740266|ref|ZP_02413040.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 14]
gi|167817486|ref|ZP_02449166.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 91]
gi|167847373|ref|ZP_02472881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei B7210]
gi|167895962|ref|ZP_02483364.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 7894]
gi|167904346|ref|ZP_02491551.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei NCTC 13177]
gi|167912606|ref|ZP_02499697.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 112]
gi|217420440|ref|ZP_03451945.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 576]
gi|226196790|ref|ZP_03792369.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei Pakistan 9]
gi|237813879|ref|YP_002898330.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei MSHR346]
gi|238561262|ref|ZP_00442338.2| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei GB8 horse 4]
gi|242316188|ref|ZP_04815204.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 1106b]
gi|254178822|ref|ZP_04885476.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei ATCC 10399]
gi|254199038|ref|ZP_04905453.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei S13]
gi|254202774|ref|ZP_04909137.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei FMH]
gi|254259655|ref|ZP_04950709.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 1710a]
gi|254299327|ref|ZP_04966777.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 406e]
gi|121227325|gb|ABM49843.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei SAVP1]
gi|124293674|gb|ABN02943.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei NCTC 10229]
gi|126219341|gb|ABN82847.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 668]
gi|126227334|gb|ABN90874.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 1106a]
gi|126244015|gb|ABO07108.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei NCTC 10247]
gi|134248214|gb|EBA48297.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 305]
gi|147747021|gb|EDK54098.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei FMH]
gi|157808756|gb|EDO85926.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 406e]
gi|160694736|gb|EDP84744.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei ATCC 10399]
gi|169656868|gb|EDS88265.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei S13]
gi|217395852|gb|EEC35869.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 576]
gi|225931050|gb|EEH27058.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei Pakistan 9]
gi|237506031|gb|ACQ98349.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei MSHR346]
gi|238524965|gb|EEP88395.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei GB8 horse 4]
gi|242139427|gb|EES25829.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 1106b]
gi|243065276|gb|EES47462.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei PRL-20]
gi|254218344|gb|EET07728.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 1710a]
Length = 403
Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats.
Identities = 217/339 (64%), Positives = 269/339 (79%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG
Sbjct: 65 EARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 124
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 125 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 184
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+FTTGT +ADQ+ L+ L VF
Sbjct: 185 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLKSLIVFA 244
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 245 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 304
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QIGL+PLF
Sbjct: 305 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 364
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 365 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|83719302|ref|YP_441701.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
thailandensis E264]
gi|83653127|gb|ABC37190.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
thailandensis E264]
Length = 377
Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats.
Identities = 216/339 (63%), Positives = 268/339 (79%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG
Sbjct: 39 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 98
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 99 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 158
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+ L VF
Sbjct: 159 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFA 218
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 219 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 278
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QIGL+PLF
Sbjct: 279 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 338
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 339 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 377
>gi|33593916|ref|NP_881560.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
pertussis Tohama I]
gi|33598411|ref|NP_886054.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
parapertussis 12822]
gi|33603351|ref|NP_890911.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
bronchiseptica RB50]
gi|33563990|emb|CAE43255.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
pertussis Tohama I]
gi|33574540|emb|CAE39187.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
parapertussis]
gi|33577475|emb|CAE34740.1| ribonucleoside-diphosphate reductase beta chain [Bordetella
bronchiseptica RB50]
gi|332383335|gb|AEE68182.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
pertussis CS]
Length = 398
Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats.
Identities = 212/349 (60%), Positives = 267/349 (76%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
L A RV V DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M
Sbjct: 50 AASLGASDATAGRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSR 109
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFE
Sbjct: 110 DIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFE 169
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EA+H+H +QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +ADQ
Sbjct: 170 EAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHTGTPEADQ 229
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ L+ L VF + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN
Sbjct: 230 KLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLIN 289
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
IK+ENPHLWT EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANRR
Sbjct: 290 TIKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRR 349
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
C QIG+EPLF ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 350 CQQIGIEPLFPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398
>gi|76808925|ref|YP_334881.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 1710b]
gi|254208116|ref|ZP_04914466.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei JHU]
gi|76578378|gb|ABA47853.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
pseudomallei 1710b]
gi|147752010|gb|EDK59077.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei JHU]
Length = 376
Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats.
Identities = 217/339 (64%), Positives = 269/339 (79%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG
Sbjct: 38 EARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 97
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 98 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 157
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+FTTGT +ADQ+ L+ L VF
Sbjct: 158 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLKSLIVFA 217
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 218 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 277
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QIGL+PLF
Sbjct: 278 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 337
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 338 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 376
>gi|192291019|ref|YP_001991624.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas
palustris TIE-1]
gi|192284768|gb|ACF01149.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris
TIE-1]
Length = 373
Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats.
Identities = 264/350 (75%), Positives = 290/350 (82%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
+ TGL I G RV VDDKRM+NAR+DVNQLLPLKY WAWEKYL+ACNNHWMPTEV MQ
Sbjct: 24 DTTGLGTIDRGAARVRVDDKRMINARADVNQLLPLKYHWAWEKYLAACNNHWMPTEVSMQ 83
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D+ALWKS++GLT+DER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF
Sbjct: 84 ADIALWKSRDGLTEDERHMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAF 143
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L P F TGT D
Sbjct: 144 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALDYTKHLDDPHFETGTPATD 203
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
Q FL DL FYVVFEGMWFYTGFAQILSLGR KM GIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 204 QAFLLDLIAFYVVFEGMWFYTGFAQILSLGRRQKMTGIAEQYQYILRDESIHLNFGIDVI 263
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
NQIK+EN +WT FQ R M+H+A LE AY +TMP G +GLNA CE YM FIANR
Sbjct: 264 NQIKLENAAVWTASFQDDIRGMIHDAAELEAAYGRDTMPHGLLGLNAALCESYMHFIANR 323
Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RC Q+GL P+F T+NPFPWMSE +DLKKEKNFFETRV EYQ G L WD
Sbjct: 324 RCVQLGLRPVFAETDNPFPWMSETMDLKKEKNFFETRVIEYQNGGALDWD 373
>gi|146282010|ref|YP_001172163.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
stutzeri A1501]
gi|145570215|gb|ABP79321.1| ribonucleoside reductase, small chain [Pseudomonas stutzeri A1501]
Length = 415
Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats.
Identities = 217/352 (61%), Positives = 282/352 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+KRM+NAR+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDIREGLNELEGEAARVRVDEKRMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKSK+GL++DER ++KRNLGFF++++SLVANN+VLA YR ++NPECRQY+LRQ
Sbjct: 124 MNADIALWKSKDGLSEDERRIVKRNLGFFSTADSLVANNLVLATYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFQTGTPE 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D++FL++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKQFLKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLW E + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 304 MINQIKIENPHLWDAEMKDEATQMILQGTQLEIEYARDTMPRGVLGMNASMMEDYLKFIA 363
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 364 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|299134880|ref|ZP_07028072.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2]
gi|298590690|gb|EFI50893.1| Ribonucleoside-diphosphate reductase [Afipia sp. 1NLS2]
Length = 373
Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats.
Identities = 269/350 (76%), Positives = 300/350 (85%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
TGL I RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ
Sbjct: 24 EQTGLGAIDRSGGRVSVDEKRMINCRADVNQLLPLKYKWAWEKYLAGCNNHWMPTEVSMQ 83
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D+ALWKS++GLTDDER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF
Sbjct: 84 ADIALWKSRDGLTDDERRAIKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQAF 143
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L +P F+TGT++AD
Sbjct: 144 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQNLDNPDFSTGTQEAD 203
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
Q FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 204 QSFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 263
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
NQIK+EN HLWTK FQ+ R M+ +A LE AY +TMP+GF+GLNA CEQYM FIANR
Sbjct: 264 NQIKLENQHLWTKAFQEDVRGMIRDAAELEAAYGRDTMPRGFLGLNAALCEQYMHFIANR 323
Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RC QIGL P+F TENPFPWMSE +DLKKEKNFFETRV EYQ G L W+
Sbjct: 324 RCAQIGLTPVFPETENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 373
>gi|238026167|ref|YP_002910398.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
glumae BGR1]
gi|237875361|gb|ACR27694.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
glumae BGR1]
Length = 407
Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats.
Identities = 212/339 (62%), Positives = 268/339 (79%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG
Sbjct: 69 QERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 128
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER +++RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 129 LTEDERRIVRRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EV SI K + + + TL+ P+F TGT+DADQ+ L+ L VF
Sbjct: 189 IVESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIHTLTDPAFVTGTQDADQKLLKSLIVFA 248
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 249 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 308
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + A LE YA +TMP+G +GLNA + Y++FIANRRC QIGL+PL+
Sbjct: 309 TPEFRAEIRELFKRAVELEYRYAEDTMPRGVLGLNAAMFKSYLRFIANRRCQQIGLDPLY 368
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 369 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407
>gi|254483523|ref|ZP_05096750.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma
proteobacterium HTCC2148]
gi|214036244|gb|EEB76924.1| ribonucleoside-diphosphate reductase, beta subunit [marine gamma
proteobacterium HTCC2148]
Length = 425
Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats.
Identities = 219/352 (62%), Positives = 283/352 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
M GL ++ G RV+VD+K M+N R+D+NQL+PLKY WAW+KYL C NHWMP E+
Sbjct: 74 MDVAAGLEELEMGASRVSVDEKAMINCRADLNQLVPLKYDWAWQKYLDGCANHWMPQEIN 133
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+A WKS +GL+DDER ++ R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ
Sbjct: 134 MTADVATWKSADGLSDDERRIVMRSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQ 193
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ AKA+W+L +T +LS P+F TGT++
Sbjct: 194 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKASWSLSHTHSLSDPTFNTGTQE 253
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQE L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 254 TDQELLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 313
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIK+ENP+LWT+ FQQ+ M+ E T +EI YA +TMP+G +G+NA E+Y+ FIA
Sbjct: 314 VINQIKLENPNLWTETFQQEVIQMILEGTEIEIQYARDTMPRGVLGMNAAIMEEYLHFIA 373
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR Q+GL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD
Sbjct: 374 NRRLSQLGLPEQFAGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 425
>gi|92119123|ref|YP_578852.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter
hamburgensis X14]
gi|91802017|gb|ABE64392.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14]
Length = 416
Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats.
Identities = 270/351 (76%), Positives = 297/351 (84%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ TGL I RV VDDKRM+NAR+DVNQLLPLKYGWAWEKYLS CNNHWMPTEV M
Sbjct: 66 TDATGLGAIDRSGGRVRVDDKRMINARADVNQLLPLKYGWAWEKYLSGCNNHWMPTEVSM 125
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
Q D+ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 126 QADIALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 185
Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
FEEAVH+HTFQYI+ SLGLDEGELFNMYREV SIT KA WAL++T+ L P F TGT +A
Sbjct: 186 FEEAVHTHTFQYIVESLGLDEGELFNMYREVSSITDKAAWALKHTRHLDDPGFKTGTPEA 245
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
DQ FL+DL FYVVFEGMWFYTGF QILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV
Sbjct: 246 DQAFLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 305
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
INQIKIENPHLW+K FQ++ R ML A LE AY +TMP+GF+GLNA CEQYM IAN
Sbjct: 306 INQIKIENPHLWSKPFQEEVRAMLKNAAELEAAYGRDTMPRGFLGLNAALCEQYMHVIAN 365
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RRC Q+GL P+F +NPFPWMSE +DLKKEKNFFETRV EYQ G L WD
Sbjct: 366 RRCAQLGLAPVFAEADNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 416
>gi|146308172|ref|YP_001188637.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
mendocina ymp]
gi|145576373|gb|ABP85905.1| Ribonucleoside-diphosphate reductase [Pseudomonas mendocina ymp]
Length = 416
Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 279/352 (79%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 65 LDIQEGLDDLEGAAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 125 MNADIALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 184
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P+F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPTFNTGTPE 244
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D++FL++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDRQFLKNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 304
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW + + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 365 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|54294662|ref|YP_127077.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
pneumophila str. Lens]
gi|53754494|emb|CAH15978.1| hypothetical protein lpl1739 [Legionella pneumophila str. Lens]
Length = 367
Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats.
Identities = 225/349 (64%), Positives = 282/349 (80%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M
Sbjct: 17 ATGLEALEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 76
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 77 DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 136
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +F TGT + DQ
Sbjct: 137 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 196
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 197 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 256
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIKIENPHLWT EF+ + ++ E LE YA +TMP G +G+NA E+Y+ FIANRR
Sbjct: 257 QIKIENPHLWTPEFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 316
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 317 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365
>gi|119504228|ref|ZP_01626308.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
proteobacterium HTCC2080]
gi|119459736|gb|EAW40831.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
proteobacterium HTCC2080]
Length = 419
Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats.
Identities = 221/352 (62%), Positives = 280/352 (79%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP EV
Sbjct: 68 IDIAPGLEELEMGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEVN 127
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+A WK +GL+DDER +I R+LG+F++++SLVANN+VLAIYR ++NPECRQYLLRQ
Sbjct: 128 MTADVATWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYLLRQ 187
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ AKA W+L T +LS P+F TGT +
Sbjct: 188 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAAKATWSLGKTHSLSDPNFRTGTLE 247
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQE L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 248 TDQELLRNLIGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 307
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIK+ENP LWT EFQQ++ M+ E T LEIAYA +TMP+G +G+NA E+Y+QFI
Sbjct: 308 VINQIKLENPLLWTPEFQQEAIQMILEGTELEIAYARDTMPRGVLGMNAAMMEEYLQFIC 367
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR +Q+GL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD
Sbjct: 368 NRRLNQVGLPEQFPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 419
>gi|330815478|ref|YP_004359183.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
gladioli BSR3]
gi|327367871|gb|AEA59227.1| Ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
gladioli BSR3]
Length = 407
Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats.
Identities = 210/339 (61%), Positives = 266/339 (78%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
++RVN+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG
Sbjct: 69 QERVNIADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 128
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 129 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y E+ SI K + + + TL+ P+F TGT +ADQ+ L+ L VF
Sbjct: 189 IVESLGLDEGEMFNAYHEITSIRDKDEFLIPFIHTLTDPAFVTGTPEADQKLLKSLIVFA 248
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 249 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 308
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + A LE YA +TMP+G +GLNA + Y++FIANRRC QIGL+ L+
Sbjct: 309 TPEFRAEIRELFKHAVELEYRYAEDTMPRGVLGLNASMFKSYLRFIANRRCQQIGLDALY 368
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 369 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407
>gi|124268397|ref|YP_001022401.1| ribonucleotide-diphosphate reductase subunit beta [Methylibium
petroleiphilum PM1]
gi|124261172|gb|ABM96166.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum
PM1]
Length = 403
Score = 339 bits (869), Expect = 4e-91, Method: Composition-based stats.
Identities = 208/341 (60%), Positives = 260/341 (76%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
AG +RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+A WK
Sbjct: 63 AGTRRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDP 122
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
NGL++DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +
Sbjct: 123 NGLSEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAY 182
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
QYI+ SLGLDE E+FN Y EV SI K + + + + P+F TGT + D+ L+ L V
Sbjct: 183 QYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIGAIMDPNFHTGTLENDRTLLKSLIV 242
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
F + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP
Sbjct: 243 FACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQ 302
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
LWT EF+ + + + +A LE YA +TMP+G +GLNA + Y+++IANRR QIGLE
Sbjct: 303 LWTAEFKAEIKALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEE 362
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 363 LFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 403
>gi|186477386|ref|YP_001858856.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
phymatum STM815]
gi|184193845|gb|ACC71810.1| Ribonucleoside-diphosphate reductase [Burkholderia phymatum STM815]
Length = 407
Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats.
Identities = 215/339 (63%), Positives = 265/339 (78%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E RVNV DKR++N ++DVNQL+P KY WAWEKYLS C NHWMP E+ M D+ALWK NG
Sbjct: 69 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLSGCANHWMPQEINMSRDIALWKDPNG 128
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 129 LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 188
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EV SI K + + + TL+ P+F TGT +ADQ+ L+ L VF
Sbjct: 189 IVESLGLDEGEIFNAYHEVQSIRDKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFA 248
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
V EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 249 CVMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 308
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + A LE YA +TMP+G +GLNA + Y++FI NRRC QIG++PL+
Sbjct: 309 TPEFRAEIREIFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGIDPLY 368
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 369 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 407
>gi|158341282|ref|YP_001522354.1| ribonucleotide-diphosphate reductase subunit beta [Acaryochloris
marina MBIC11017]
gi|158311523|gb|ABW33134.1| ribonucleoside-diphosphate reductase, beta subunit [Acaryochloris
marina MBIC11017]
Length = 384
Score = 339 bits (868), Expect = 5e-91, Method: Composition-based stats.
Identities = 206/344 (59%), Positives = 264/344 (76%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P +R+NV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+ALW
Sbjct: 41 PETQPPRRINVADKRIINGQTDVNQLVPFKYQWAWDKYLAGCANHWMPQEINMSRDIALW 100
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K+ +GLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+
Sbjct: 101 KTTDGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHT 160
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H +QYI+ SLGLDEGE+FN YREV I K + + + +TL+ P+F TGT + DQ+ L+
Sbjct: 161 HAYQYIVESLGLDEGEIFNAYREVDCIREKDEFLIPFVETLTDPTFETGTPENDQKLLKS 220
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L F + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID++N IK E
Sbjct: 221 LIAFSCLMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLVNAIKQE 280
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NPHLWT EF ++ R + A LE YA +TMP+G +GLNA + Y+++IANRR QIG
Sbjct: 281 NPHLWTPEFCEEIRDLFKRAVELEYRYAEDTMPRGVLGLNASMFKSYLRYIANRRSQQIG 340
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L+P+F ENPFPWMSE++DLKKE+NFFETRV EYQ G L WD
Sbjct: 341 LDPIFASEENPFPWMSEMVDLKKERNFFETRVLEYQTGGALSWD 384
>gi|89902117|ref|YP_524588.1| ribonucleotide-diphosphate reductase subunit beta [Rhodoferax
ferrireducens T118]
gi|89346854|gb|ABD71057.1| Ribonucleoside-diphosphate reductase [Rhodoferax ferrireducens
T118]
Length = 400
Score = 339 bits (868), Expect = 5e-91, Method: Composition-based stats.
Identities = 209/345 (60%), Positives = 264/345 (76%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
+ + +RVN DKR++N ++DVNQL+P KY WAWEKYLS+C NHWMP EV M D+AL
Sbjct: 56 AAVSISPRRVNAADKRIINGKTDVNQLVPFKYKWAWEKYLSSCANHWMPQEVNMTRDIAL 115
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
WK NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 116 WKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 175
Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P+F TGT +ADQ L+
Sbjct: 176 THAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPAFKTGTHEADQTLLK 235
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
L VF + EG++FY GFAQIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+
Sbjct: 236 SLIVFACLMEGLFFYVGFAQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKL 295
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
ENP LWT EF+ + + + +A LE YA +TMP+G +G+NA + Y+++IANRR QI
Sbjct: 296 ENPQLWTSEFKAEIKALFEQAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQI 355
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
GLE LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 356 GLETLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 400
>gi|325121074|gb|ADY80597.1| ribonucleoside-diphosphate reductase, beta subunit [Acinetobacter
calcoaceticus PHEA-2]
Length = 370
Score = 339 bits (868), Expect = 5e-91, Method: Composition-based stats.
Identities = 222/351 (63%), Positives = 281/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 20 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 79
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 80 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 139
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W L+YTQ+L+ P+F TGT +
Sbjct: 140 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVARKAAWGLKYTQSLTDPNFHTGTPE 199
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 200 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 259
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 260 MINQIKIENPHLWTAEFQQEVVQMIVEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 319
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 320 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 370
>gi|54297688|ref|YP_124057.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
pneumophila str. Paris]
gi|53751473|emb|CAH12891.1| hypothetical protein lpp1739 [Legionella pneumophila str. Paris]
Length = 367
Score = 339 bits (868), Expect = 5e-91, Method: Composition-based stats.
Identities = 225/349 (64%), Positives = 282/349 (80%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M
Sbjct: 17 ATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 76
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 77 DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 136
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +F TGT + DQ
Sbjct: 137 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 196
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 197 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 256
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIKIENPHLWT EF+ + ++ E LE YA +TMP G +G+NA E+Y+ FIANRR
Sbjct: 257 QIKIENPHLWTPEFKNEIIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 316
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 317 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365
>gi|167825888|ref|ZP_02457359.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei 9]
gi|167924622|ref|ZP_02511713.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei BCC215]
gi|254180586|ref|ZP_04887184.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 1655]
gi|254190977|ref|ZP_04897483.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei Pasteur 52237]
gi|157938651|gb|EDO94321.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei Pasteur 52237]
gi|184211125|gb|EDU08168.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
pseudomallei 1655]
Length = 372
Score = 339 bits (868), Expect = 5e-91, Method: Composition-based stats.
Identities = 217/339 (64%), Positives = 269/339 (79%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG
Sbjct: 34 EARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 93
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 94 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 153
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+FTTGT +ADQ+ L+ L VF
Sbjct: 154 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLKSLIVFA 213
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 214 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 273
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QIGL+PLF
Sbjct: 274 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 333
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 334 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 372
>gi|330504346|ref|YP_004381215.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
mendocina NK-01]
gi|328918632|gb|AEB59463.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
mendocina NK-01]
Length = 416
Score = 338 bits (867), Expect = 6e-91, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 278/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 65 LDIQEGLDDLEGASARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 124
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS +GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 125 MNADIALWKSTDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 184
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P F TGT +
Sbjct: 185 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPQFQTGTPE 244
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D++FL++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 245 TDRQFLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 304
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW + + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 305 VINQIKIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 364
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 365 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 416
>gi|134097869|ref|YP_001103530.1| ribonucleotide-diphosphate reductase subunit beta
[Saccharopolyspora erythraea NRRL 2338]
gi|291007412|ref|ZP_06565385.1| ribonucleotide-diphosphate reductase subunit beta
[Saccharopolyspora erythraea NRRL 2338]
gi|133910492|emb|CAM00605.1| ribonucleoside-diphosphate reductase, beta subunit
[Saccharopolyspora erythraea NRRL 2338]
Length = 360
Score = 338 bits (867), Expect = 6e-91, Method: Composition-based stats.
Identities = 261/349 (74%), Positives = 300/349 (85%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
++GL I RV+V +K M+N+R+DVNQLLPLKYGWAWEKYL+ CNNHWMPTEV MQ
Sbjct: 12 SSGLGEIDRDGGRVDVAEKAMINSRADVNQLLPLKYGWAWEKYLAGCNNHWMPTEVSMQA 71
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ALWKS++GLTDDER+M+KRNLGFFA++ESLVANNIVLA+YRH++NPECRQYLLRQAFE
Sbjct: 72 DIALWKSRDGLTDDERMMLKRNLGFFATAESLVANNIVLAVYRHITNPECRQYLLRQAFE 131
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EAVH+HTFQYI SLGLDEGELFNMYRE+PSI+ K WAL+YTQ L +P F GT +ADQ
Sbjct: 132 EAVHTHTFQYICESLGLDEGELFNMYREIPSISDKDAWALRYTQNLENPDFEIGTPEADQ 191
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGID IN
Sbjct: 192 AFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDCIN 251
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIKIENPHLWT EFQ++ RTML EA LE+AY +TMP+G +GLNA CE+YM+FI NRR
Sbjct: 252 QIKIENPHLWTPEFQEEVRTMLTEACELEVAYGRDTMPRGILGLNAGLCEEYMRFITNRR 311
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
C Q+GLEP+F T NPFPWMSE +DLKKEKNFFETRV EYQ G L WD
Sbjct: 312 CAQLGLEPVFPETANPFPWMSEAMDLKKEKNFFETRVIEYQSGGALDWD 360
>gi|187479453|ref|YP_787478.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella avium
197N]
gi|115424040|emb|CAJ50593.1| ribonucleoside-diphosphate reductase beta chain [Bordetella avium
197N]
Length = 394
Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats.
Identities = 209/345 (60%), Positives = 268/345 (77%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
+ + +RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+AL
Sbjct: 50 ADLGNTAQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIAL 109
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
WK+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H
Sbjct: 110 WKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIH 169
Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+H +QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +ADQ L+
Sbjct: 170 THAYQYIVESLDLDESEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLK 229
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
L VF + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN IK+
Sbjct: 230 SLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKL 289
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
ENPHLWT EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANRRC QI
Sbjct: 290 ENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQI 349
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
G+EPL+ ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 350 GIEPLYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 394
>gi|254784923|ref|YP_003072351.1| ribonucleotide-diphosphate reductase subunit beta [Teredinibacter
turnerae T7901]
gi|237687536|gb|ACR14800.1| ribonucleoside-diphosphate reductase [Teredinibacter turnerae
T7901]
Length = 453
Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats.
Identities = 218/351 (62%), Positives = 281/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G R+ VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 103 LDVAPGLEELEMGAARIEVDDKRMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 162
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+A+WKS+ GL+ DER ++ R+LG+F++++SLVANN+VLAIYRH++NPE RQYLLRQ
Sbjct: 163 MTADVAIWKSEEGLSADERKIVMRSLGYFSTADSLVANNLVLAIYRHITNPEARQYLLRQ 222
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P F TGT +
Sbjct: 223 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREVPSVAKKAAWSITHTQGISDPQFHTGTPE 282
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
ADQE L++L FYV+ EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 283 ADQELLRNLIGFYVITEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 342
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIK+ENPHLWT+ FQQ+ + M+ E T LEI YA +TMP+G +G+NA E+Y+ FIA
Sbjct: 343 VINQIKLENPHLWTESFQQEVKQMVLEGTELEIGYARDTMPRGVLGMNAAIMEEYLHFIA 402
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL+ + +NPFPWMSE++DL+KEKNFFETRV EYQ G L W
Sbjct: 403 NRRLAQLGLKEAYPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSW 453
>gi|330892405|gb|EGH25066.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. mori str. 301020]
Length = 415
Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats.
Identities = 212/352 (60%), Positives = 275/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
D+ALWK+ GLTDDER ++ RNLGFF++++SLVA+N+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 KTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVAHNLVLAVYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVE 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 364 NRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|241664219|ref|YP_002982579.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
pickettii 12D]
gi|309783064|ref|ZP_07677783.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp.
5_7_47FAA]
gi|240866246|gb|ACS63907.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
gi|308918172|gb|EFP63850.1| ribonucleoside-diphosphate reductase, beta subunit [Ralstonia sp.
5_7_47FAA]
Length = 402
Score = 338 bits (866), Expect = 8e-91, Method: Composition-based stats.
Identities = 210/338 (62%), Positives = 260/338 (76%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL
Sbjct: 65 RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 124
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 185 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 245 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 304
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGL+ LF
Sbjct: 305 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALFP 364
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402
>gi|163854887|ref|YP_001629185.1| ribonucleotide-diphosphate reductase subunit beta [Bordetella
petrii DSM 12804]
gi|163258615|emb|CAP40914.1| ribonucleoside-diphosphate reductase beta chain [Bordetella petrii]
Length = 396
Score = 338 bits (866), Expect = 8e-91, Method: Composition-based stats.
Identities = 209/342 (61%), Positives = 268/342 (78%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
A RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+
Sbjct: 55 DAAAHRVKVADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKN 114
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H
Sbjct: 115 PNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHA 174
Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+QYI+ SL LDE E+FN Y EVPSI AK + + + + ++ P+F TGT ++DQ+ L+ L
Sbjct: 175 YQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIEAIADPTFHTGTPESDQKLLKSLI 234
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
VF + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN IK+ENP
Sbjct: 235 VFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENP 294
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
HLWT EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANRRC QIG+E
Sbjct: 295 HLWTPEFREEIRGLFQKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIE 354
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
PL+ ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 355 PLYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 396
>gi|307546480|ref|YP_003898959.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
elongata DSM 2581]
gi|307218504|emb|CBV43774.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
elongata DSM 2581]
Length = 415
Score = 338 bits (866), Expect = 8e-91, Method: Composition-based stats.
Identities = 219/352 (62%), Positives = 284/352 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G R+ VDDK+M+NAR+D+NQL+P KY WAW+KYL NHWMP EV
Sbjct: 64 LDVAAGLEELEMGAARIEVDDKQMINARADLNQLVPFKYEWAWQKYLDGSANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS +GLTDDER +++R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ
Sbjct: 124 MNADIALWKSADGLTDDERRIVERSLGYFSTADSLVANNLVLALYRLITNPECRQYLLRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY + SL +DEGE+FNMYRE+PS+ AK+ W+L++TQ+L+ P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCVESLAMDEGEVFNMYREIPSVAAKSAWSLKHTQSLARPDFHTGTPE 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQE L++L FY V EG++FY GF+QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D
Sbjct: 244 TDQELLRNLVAFYCVTEGIFFYCGFSQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVD 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT EFQ + M+ E T LEIAYA ++MP+G +G+NA E+Y+ FI
Sbjct: 304 MINQIKIENPHLWTPEFQDECTQMILEGTELEIAYARDSMPRGVLGMNAAIMEEYLHFIC 363
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ F +NPFPWMSE+IDL+KEKNFFETRVTEYQ G L WD
Sbjct: 364 NRRLAQIGLKEQFPGAQNPFPWMSEIIDLRKEKNFFETRVTEYQVGGALSWD 415
>gi|17547523|ref|NP_520925.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
solanacearum GMI1000]
gi|17429827|emb|CAD16511.1| putative transmembrane ribonucleoside reductase (small chain)
oxidoreductase protein [Ralstonia solanacearum GMI1000]
Length = 400
Score = 338 bits (866), Expect = 9e-91, Method: Composition-based stats.
Identities = 210/339 (61%), Positives = 260/339 (76%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG
Sbjct: 62 SRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 121
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QY
Sbjct: 122 LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQY 181
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 182 IVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFA 241
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLW
Sbjct: 242 CIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLW 301
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGL+ LF
Sbjct: 302 TAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALF 361
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+NPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 362 PNEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 400
>gi|256822964|ref|YP_003146927.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM
16069]
gi|256796503|gb|ACV27159.1| Ribonucleoside-diphosphate reductase [Kangiella koreensis DSM
16069]
Length = 421
Score = 338 bits (866), Expect = 9e-91, Method: Composition-based stats.
Identities = 218/352 (61%), Positives = 281/352 (79%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G R+ VDDK+M+N R+D+NQL+P KY WAW+KYL C+NHWMP E+
Sbjct: 70 LDVAPGLEELEMGAARIEVDDKKMINCRADLNQLVPFKYDWAWQKYLDGCSNHWMPQEIN 129
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+A WK NGLTDDER ++ R+LG+F++++SLVANN+VLAIYR ++NPECRQY+LRQ
Sbjct: 130 MTKDVATWKDPNGLTDDERKIVMRSLGYFSTADSLVANNLVLAIYRLITNPECRQYILRQ 189
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY + SLG+DE E+FNMYREVPSI KA W++++TQ +S+P+F TGT +
Sbjct: 190 AFEEAIHTHAYQYCVESLGMDEAEVFNMYREVPSIAKKAAWSIKHTQGISNPTFKTGTDE 249
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
ADQE L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFG+D
Sbjct: 250 ADQELLRNLIGFYCVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGVD 309
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIK+ENPHLWT EF+Q+ M+ E T LEI YA +TMP+G +G+NA E+Y+QFI
Sbjct: 310 IINQIKLENPHLWTAEFKQEVLQMILEGTQLEIEYARDTMPRGVLGMNAGMMEEYLQFIC 369
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR Q+GL FK NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 370 NRRLAQLGLPEQFKNVSNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 421
>gi|15596352|ref|NP_249846.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa PAO1]
gi|107100605|ref|ZP_01364523.1| hypothetical protein PaerPA_01001630 [Pseudomonas aeruginosa PACS2]
gi|116049087|ref|YP_792111.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa UCBPP-PA14]
gi|152988648|ref|YP_001349579.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa PA7]
gi|218892881|ref|YP_002441750.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa LESB58]
gi|254239525|ref|ZP_04932847.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192]
gi|296390475|ref|ZP_06879950.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
aeruginosa PAb1]
gi|313106126|ref|ZP_07792381.1| NrdB, tyrosyl radical-harboring component of class Ia
ribonucleotide reductase [Pseudomonas aeruginosa 39016]
gi|9947077|gb|AAG04544.1|AE004545_7 NrdB, tyrosyl radical-harboring component of class Ia
ribonucleotide reductase [Pseudomonas aeruginosa PAO1]
gi|115584308|gb|ABJ10323.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126192903|gb|EAZ56966.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa 2192]
gi|150963806|gb|ABR85831.1| ribonucleoside reductase, small chain [Pseudomonas aeruginosa PA7]
gi|187939552|gb|ACD38699.1| ribonucleoside reductase small chain [Pseudomonas aeruginosa]
gi|218773109|emb|CAW28921.1| NrdB, tyrosyl radical-harboring component of class Ia
ribonucleotide reductase [Pseudomonas aeruginosa LESB58]
gi|310878883|gb|EFQ37477.1| NrdB, tyrosyl radical-harboring component of class Ia
ribonucleotide reductase [Pseudomonas aeruginosa 39016]
Length = 415
Score = 338 bits (866), Expect = 9e-91, Method: Composition-based stats.
Identities = 215/352 (61%), Positives = 279/352 (79%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ RV V DK+M+NAR+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDIQEGLDDLEGSAARVQVGDKQMINARADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKSK+GL++DER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MNADIALWKSKDGLSEDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMY E+PS+ KA+W L+YT+++S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLGMDEGEIFNMYHEIPSVAKKASWGLKYTRSISDPMFQTGTPE 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D++FL++L +Y V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDRQFLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLW + + ++ M+ + T LEI YA +TMP+G +G+NA E Y++FIA
Sbjct: 304 VINQIKIENPHLWDAQMKDEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIA 363
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 364 NRRLTQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 415
>gi|226940720|ref|YP_002795794.1| ribonucleotide-diphosphate reductase subunit beta [Laribacter
hongkongensis HLHK9]
gi|226715647|gb|ACO74785.1| Ribonucleoside-diphosphate reductase beta chain [Laribacter
hongkongensis HLHK9]
Length = 357
Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 214/338 (63%), Positives = 262/338 (77%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
RVN DKR++N +DVNQL+P KY WAW+KYL+ C NHWMP EV MQ D+ LWK NGL
Sbjct: 20 GRVNAVDKRIINGDTDVNQLVPFKYHWAWDKYLATCANHWMPQEVNMQRDIELWKRPNGL 79
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
TDDER ++ RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 80 TDDERRIVIRNLGFFTTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 139
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ SLGLDEGE+FN Y E+ SI AK + + + TL P+F TGT ++DQ L+ L VF
Sbjct: 140 VESLGLDEGEVFNAYHEIASIRAKDEFLIPFIDTLCDPAFKTGTPESDQLLLKSLIVFAC 199
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK ENPHLWT
Sbjct: 200 IMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINSIKQENPHLWT 259
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
EFQ++ + +A LE AYA +TMP+G +GLNA ++Y+ FIANRR QIGLEPLF
Sbjct: 260 VEFQEELYGLFRKAIDLEYAYAEDTMPRGVLGLNAAMFKEYLDFIANRRMQQIGLEPLFT 319
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+ +NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD
Sbjct: 320 HVDNPFPWMSEMIDLKKEKNFFETRVTEYQSGGALDWD 357
>gi|299065648|emb|CBJ36820.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Ralstonia solanacearum CMR15]
Length = 398
Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 210/339 (61%), Positives = 260/339 (76%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG
Sbjct: 60 SRRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 119
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QY
Sbjct: 120 LTEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQY 179
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 180 IVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFA 239
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLW
Sbjct: 240 CIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLW 299
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGL+ LF
Sbjct: 300 TAEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALF 359
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+NPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 360 PNEDNPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 398
>gi|313200886|ref|YP_004039544.1| ribonucleoside-diphosphate reductase [Methylovorus sp. MP688]
gi|312440202|gb|ADQ84308.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. MP688]
Length = 381
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 203/340 (59%), Positives = 262/340 (77%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
RV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+A WK +
Sbjct: 42 ATGRVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSS 101
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
LT+DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +Q
Sbjct: 102 ALTEDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 161
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
YI+ SLGLDE E+FN Y+EV SI K ++ + + TL+ P F TGT ADQ+ L+ L VF
Sbjct: 162 YIVESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVF 221
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K+ENPHL
Sbjct: 222 ACIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDLINTLKLENPHL 281
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
WT EF+++ + ++ +A LE YA +TMP+G +GLNA ++Y++FIANRR QIG++ L
Sbjct: 282 WTPEFREEIKRLMQQAVELEYRYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGIDAL 341
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+ NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD
Sbjct: 342 YPGASNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 381
>gi|167564160|ref|ZP_02357076.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
oklahomensis EO147]
Length = 369
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 215/339 (63%), Positives = 267/339 (78%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG
Sbjct: 31 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 90
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 91 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 150
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ L VF
Sbjct: 151 IVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFA 210
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 211 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 270
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QIGL+PLF
Sbjct: 271 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 330
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 331 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 369
>gi|148359319|ref|YP_001250526.1| ribonucleoside-diphosphate reductase subunit beta [Legionella
pneumophila str. Corby]
gi|296107366|ref|YP_003619066.1| ribonucleoside-diphosphate reductase beta chain [Legionella
pneumophila 2300/99 Alcoy]
gi|148281092|gb|ABQ55180.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
pneumophila str. Corby]
gi|295649267|gb|ADG25114.1| ribonucleoside-diphosphate reductase beta chain [Legionella
pneumophila 2300/99 Alcoy]
gi|307610475|emb|CBX00047.1| hypothetical protein LPW_18021 [Legionella pneumophila 130b]
Length = 367
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 225/349 (64%), Positives = 282/349 (80%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M
Sbjct: 17 ATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 76
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 77 DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 136
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +F TGT + DQ
Sbjct: 137 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 196
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 197 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 256
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIKIENPHLWT EF+ + ++ E LE YA +TMP G +G+NA E+Y+ FIANRR
Sbjct: 257 QIKIENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 316
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 317 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 365
>gi|75677068|ref|YP_319489.1| ribonucleotide-diphosphate reductase subunit beta [Nitrobacter
winogradskyi Nb-255]
gi|74421938|gb|ABA06137.1| ribonucleotide reductase [Nitrobacter winogradskyi Nb-255]
Length = 391
Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats.
Identities = 268/351 (76%), Positives = 296/351 (84%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ GL I G RV VDDKRM+NAR+DVNQLLPLKY WAWEKYLS CNNHWMPTEV M
Sbjct: 41 TDAAGLGDIDRGGARVRVDDKRMINARADVNQLLPLKYRWAWEKYLSGCNNHWMPTEVSM 100
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
Q D+ALWKSK+GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 101 QADIALWKSKDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 160
Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F TGT +A
Sbjct: 161 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEA 220
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
DQ FL+DL FYVVFEGMWFYTGF QILSLGR NKMVGIAEQYQYI+RDES+HLNFGID+
Sbjct: 221 DQAFLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDI 280
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
INQIKIENPHLW+K FQ++ R ML A LE AY +TMP+GF+GLNA CE YM IAN
Sbjct: 281 INQIKIENPHLWSKPFQEEVRAMLKNAADLEAAYGRDTMPRGFLGLNATLCETYMHVIAN 340
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RRC Q+GL P+F +NPFPWMSE +DLKKEKNFFETRV EYQ G L WD
Sbjct: 341 RRCAQLGLAPVFPDADNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 391
>gi|329893650|ref|ZP_08269784.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
proteobacterium IMCC3088]
gi|328923577|gb|EGG30889.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
proteobacterium IMCC3088]
Length = 432
Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 277/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
M GL ++ G RV+VD+K M+N R+D+NQL+P KY WAW+KY+ C NHWMP E+
Sbjct: 81 MDLAPGLEELELGAARVSVDEKAMINCRADLNQLVPFKYDWAWQKYIDGCANHWMPQEIN 140
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+A WKS + L+DDER ++ R+LG+F++++SLVANN+VL IYR ++NPECRQYLLRQ
Sbjct: 141 MTADVATWKSADVLSDDERRIVMRSLGYFSTADSLVANNLVLGIYRLITNPECRQYLLRQ 200
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W+L +T +LS P+F TGT +
Sbjct: 201 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVAKKATWSLSHTHSLSDPNFKTGTTE 260
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 261 NDQTLLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 320
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIK+ENPHLWT++FQ++ ML E T +EI YA +TMP+G +G+NA E+Y+QFI
Sbjct: 321 VINQIKLENPHLWTEDFQKEVIQMLLEGTQIEIEYARDTMPRGVLGMNAAMMEEYLQFIC 380
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR Q+GL F +NPFPWMSE++DL+KEKNFFETRV EYQ G L WD
Sbjct: 381 NRRLAQLGLPEQFPGVQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALSWD 432
>gi|253998799|ref|YP_003050862.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4]
gi|253985478|gb|ACT50335.1| Ribonucleoside-diphosphate reductase [Methylovorus sp. SIP3-4]
Length = 383
Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats.
Identities = 203/339 (59%), Positives = 262/339 (77%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
RV DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ M D+A WK +
Sbjct: 45 TGRVQAVDKRVINGQTDVNQLVPFKYHWAWDKYLAGCANHWMPQEISMSRDIAQWKDSSA 104
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QY
Sbjct: 105 LTEDERLIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 164
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDE E+FN Y+EV SI K ++ + + TL+ P F TGT ADQ+ L+ L VF
Sbjct: 165 IVESLGLDESEIFNAYQEVSSIRDKDDFLIPFINTLTDPEFKTGTTQADQQLLRSLIVFA 224
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K+ENPHLW
Sbjct: 225 CIMEGLFFYVGFVQILALGRQNKMQGAAEQYQYILRDESMHCNFGIDLINTLKLENPHLW 284
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+++ + ++ +A LE YA +TMP+G +GLNA ++Y++FIANRR QIG++ L+
Sbjct: 285 TPEFREEIKRLMQQAVELEYRYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGIDALY 344
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD
Sbjct: 345 PGASNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 383
>gi|160871658|ref|ZP_02061790.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella
grylli]
gi|159120457|gb|EDP45795.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsiella
grylli]
Length = 362
Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats.
Identities = 216/348 (62%), Positives = 277/348 (79%)
Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
TGL ++ G RV+VDDK+++N R+D+NQL+P KY WAWEKYL+AC NHWMP E+ M D
Sbjct: 14 TGLETLEVGAARVHVDDKKIINCRADLNQLVPFKYKWAWEKYLAACANHWMPQEINMSAD 73
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ALW+ GL +DERL+++R+LGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFEE
Sbjct: 74 IALWRDAKGLREDERLIVERSLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEE 133
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+H+H +QY+I SLG+DE +FNMYRE+P++ K WAL +TQ+L+ P+F TGT + DQ
Sbjct: 134 ALHTHAYQYVIESLGMDEARIFNMYRELPTVAKKTEWALPFTQSLADPNFRTGTPETDQR 193
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
L+DL FYVVFEG++FY GF+QILS+GR NKM G AEQ+QYI+RDES+HLNFGIDVINQ
Sbjct: 194 LLRDLIAFYVVFEGIFFYVGFSQILSMGRQNKMTGTAEQFQYILRDESMHLNFGIDVINQ 253
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
IK+ENPHLWT EF++ ++ E LE YA +T+P+G +GLNA Y++FI NRR
Sbjct: 254 IKLENPHLWTPEFKRYVINLIKEGVDLEYQYALDTLPRGILGLNANLMWDYLRFIGNRRF 313
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
QIGL + NP PWMSE+IDLKKEKNFFETRVTEYQ G L WD
Sbjct: 314 TQIGLAEQYPGVSNPLPWMSEIIDLKKEKNFFETRVTEYQTGGSLNWD 361
>gi|167574685|ref|ZP_02367559.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
oklahomensis C6786]
Length = 369
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 215/339 (63%), Positives = 266/339 (78%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG
Sbjct: 31 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 90
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 91 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 150
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT ADQ+ L+ L VF
Sbjct: 151 IVESLGLDEGEIFNAYHEVSSIRAKDEFLIPFIHTLTDPAFKTGTLVADQKLLKSLIVFA 210
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 211 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 270
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QIGL+PLF
Sbjct: 271 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 330
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 331 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 369
>gi|52842002|ref|YP_095801.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|52629113|gb|AAU27854.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
Length = 381
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 225/349 (64%), Positives = 282/349 (80%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
TGL ++ G R++VDDK+++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+ M
Sbjct: 31 ATGLETLEMGAARIHVDDKQIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEISMSA 90
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ALWK GLT+DERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 91 DVALWKDPYGLTEDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 150
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EA+H+H +QYII SLGLDE E+FNMYRE+PS++ KA WAL +TQ+L +F TGT + DQ
Sbjct: 151 EALHTHAYQYIIESLGLDEAEVFNMYREIPSVSRKAVWALPFTQSLGDETFHTGTPENDQ 210
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 211 RLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 270
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIKIENPHLWT EF+ + ++ E LE YA +TMP G +G+NA E+Y+ FIANRR
Sbjct: 271 QIKIENPHLWTPEFKNEMIQLIREGVELEYQYARDTMPHGILGMNAEMFEEYLHFIANRR 330
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 331 LNQIGLPDQYPGAENPFPWMSEMLDLKKEKNFFETRVIEYQAGGTLSWD 379
>gi|90425007|ref|YP_533377.1| ribonucleotide-diphosphate reductase subunit beta [Rhodopseudomonas
palustris BisB18]
gi|90107021|gb|ABD89058.1| Ribonucleoside-diphosphate reductase [Rhodopseudomonas palustris
BisB18]
Length = 386
Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 265/350 (75%), Positives = 297/350 (84%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
+ TGL I RV++DDK M+N R+DVNQLLPLK+ WAWEKYL+ACNNHWMPTEV MQ
Sbjct: 37 DATGLGAIDRSGARVSIDDKAMINCRADVNQLLPLKHRWAWEKYLAACNNHWMPTEVSMQ 96
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D+ALW S++GLT+DER IKRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQAF
Sbjct: 97 ADIALWTSRDGLTEDERRAIKRNLGFFATSESLVANNIVLAIYRHLTNPECRQYLLRQAF 156
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
EEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++TQ L P+F TGT +AD
Sbjct: 157 EEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTQHLDDPTFATGTVEAD 216
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
+ FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVI
Sbjct: 217 RAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVI 276
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
NQIKIENP LWT FQ++ R ML EA LE AY+ +TMP+GF+GLNA CEQYM FI NR
Sbjct: 277 NQIKIENPKLWTAGFQEELRGMLQEAAELEAAYSRDTMPRGFLGLNAALCEQYMHFITNR 336
Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RC Q+GL P+F ENPFPWMSE +DLKKEKNFFETRV EYQ G L WD
Sbjct: 337 RCAQLGLAPIFAEVENPFPWMSETMDLKKEKNFFETRVIEYQNGGALTWD 386
>gi|254496936|ref|ZP_05109775.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
drancourtii LLAP12]
gi|254353845|gb|EET12541.1| ribonucleotide-diphosphate reductase subunit beta [Legionella
drancourtii LLAP12]
Length = 369
Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 227/349 (65%), Positives = 282/349 (80%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
TG I+ G R++VDDKR++N R+D+NQL+P KY WAW+KYLSAC NHWMP E+ M
Sbjct: 16 ATGYESIEMGAARIHVDDKRIINCRADLNQLVPFKYTWAWDKYLSACANHWMPNEISMSA 75
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ALWK NGLTDDERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQAFE
Sbjct: 76 DVALWKDPNGLTDDERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQAFE 135
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EA+H+H +QY+I SLGLDE E+FNMYRE+PS+ KA WAL YTQ+L SF TGT + DQ
Sbjct: 136 EALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLGDESFHTGTIENDQ 195
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
L+DL FYV+FEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 196 RLLRDLIAFYVIFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGIDVIN 255
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIKIENPHLWT EF+++ ++ + +E YA +TMP G +G+NA E+Y+ FIANRR
Sbjct: 256 QIKIENPHLWTPEFKEEIIQLIKDGVAMEYQYAKDTMPHGILGMNAEMFEEYLHFIANRR 315
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+QIGL + ENPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 316 LNQIGLPEQYPGAENPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 364
>gi|270156779|ref|ZP_06185436.1| ribonucleotide-diphosphate reductase beta subunit [Legionella
longbeachae D-4968]
gi|289164772|ref|YP_003454910.1| ribonucleoside-diphosphate reductase, beta subunit [Legionella
longbeachae NSW150]
gi|269988804|gb|EEZ95058.1| ribonucleotide-diphosphate reductase beta subunit [Legionella
longbeachae D-4968]
gi|288857945|emb|CBJ11805.1| putative ribonucleoside-diphosphate reductase, beta subunit
[Legionella longbeachae NSW150]
Length = 366
Score = 337 bits (863), Expect = 2e-90, Method: Composition-based stats.
Identities = 223/352 (63%), Positives = 282/352 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ TG ++ G R++VDDKR++N R+D+NQL+P KY WAW+KYL+AC NHWMP E+
Sbjct: 13 LTGATGYESLEMGAARIHVDDKRIINCRADLNQLVPFKYKWAWDKYLTACANHWMPNEIS 72
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWK NGLT+ ERL+IKRNLGFF++++SLVANN+VLA+YRH++NPECRQYLLRQ
Sbjct: 73 MSADVALWKDPNGLTEAERLIIKRNLGFFSTADSLVANNLVLAVYRHITNPECRQYLLRQ 132
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY+I SLGLDE E+FNMYRE+PS+ KA WAL YTQ+L+ +F TGT +
Sbjct: 133 AFEEALHTHAYQYVIESLGLDEAEVFNMYREIPSVATKAAWALPYTQSLADETFHTGTVE 192
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L+DL FYVVFEG++FY GF QILS+GR NKMVG +EQ+QYI+RDES+H+NFGID
Sbjct: 193 NDQRLLRDLIAFYVVFEGIFFYVGFTQILSMGRRNKMVGTSEQFQYILRDESMHMNFGID 252
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIKIENPHLWT EF+++ ++ + LE YA +TMP+G +G+NA E+Y+ FIA
Sbjct: 253 VINQIKIENPHLWTSEFKEEIIQLIRQGVDLEYQYAKDTMPQGILGMNAEMFEEYLHFIA 312
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL + NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 313 NRRLTQIGLAEQYPGAVNPFPWMSEMMDLKKEKNFFETRVIEYQAGGTLSWD 364
>gi|224825450|ref|ZP_03698555.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002]
gi|224602371|gb|EEG08549.1| Ribonucleoside-diphosphate reductase [Lutiella nitroferrum 2002]
Length = 360
Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats.
Identities = 204/340 (60%), Positives = 257/340 (75%), Gaps = 1/340 (0%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
G RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV MQ D+ WK+
Sbjct: 22 GTGRVNASDKRVINGQTDVNQLVPFKYKWAWEKYLAQCANHWMPQEVNMQRDIEQWKT-G 80
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L++DE ++KRNLGFF +++SL ANNIVL YR ++ PECRQ+LLRQAF+EA+H+H +Q
Sbjct: 81 QLSEDEMRLVKRNLGFFVTADSLAANNIVLGTYRQITAPECRQFLLRQAFDEAIHTHAYQ 140
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
YI+ SLGLDEGE+FN Y E+ SI K + + + TL +P F TGT + DQ+ L+ L VF
Sbjct: 141 YIVESLGLDEGEVFNAYHEIKSIRDKDEFLIPFIDTLCNPEFKTGTTETDQQLLKSLIVF 200
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN +K ENP L
Sbjct: 201 ACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTVKQENPQL 260
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
WT+EF+ + + A LE AYA +TMP+G +GLNA ++Y++FIANRR QIGLEP+
Sbjct: 261 WTEEFKAEITGLFKHAVELEYAYAEDTMPRGVLGLNAAMFKEYLRFIANRRMQQIGLEPM 320
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
F NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD
Sbjct: 321 FPGVTNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 360
>gi|212212091|ref|YP_002303027.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
burnetii CbuG_Q212]
gi|212010501|gb|ACJ17882.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
CbuG_Q212]
Length = 401
Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats.
Identities = 222/349 (63%), Positives = 279/349 (79%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M
Sbjct: 52 ATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTA 111
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFE
Sbjct: 112 DIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFE 171
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+
Sbjct: 172 EALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDR 231
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
L+DL FYVVFEG++FY GF QIL++GR KM G +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 232 RLLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVIN 291
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIKIENPHLW K FQ++ M+ E LE YA +TMP+G +GLNA + Y+Q+IANRR
Sbjct: 292 QIKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRR 351
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
C QIGL F +N FPWMSE++DLKKEKNFFETRV EYQ G LKWD
Sbjct: 352 CAQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400
>gi|29654845|ref|NP_820537.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
burnetii RSA 493]
gi|154705923|ref|YP_001423853.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
burnetii Dugway 5J108-111]
gi|161831080|ref|YP_001597389.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
burnetii RSA 331]
gi|29542113|gb|AAO91051.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
RSA 493]
gi|154355209|gb|ABS76671.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
Dugway 5J108-111]
gi|161762947|gb|ABX78589.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
burnetii RSA 331]
Length = 401
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 222/349 (63%), Positives = 279/349 (79%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M
Sbjct: 52 ATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTA 111
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFE
Sbjct: 112 DIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFE 171
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+
Sbjct: 172 EALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDR 231
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
L+DL FYVVFEG++FY GF QIL++GR KM G +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 232 RLLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVIN 291
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIKIENPHLW K FQ++ M+ E LE YA +TMP+G +GLNA + Y+Q+IANRR
Sbjct: 292 QIKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRR 351
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
C QIGL F +N FPWMSE++DLKKEKNFFETRV EYQ G LKWD
Sbjct: 352 CAQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400
>gi|297563527|ref|YP_003682501.1| ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847975|gb|ADH69995.1| Ribonucleoside-diphosphate reductase [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 360
Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats.
Identities = 266/349 (76%), Positives = 301/349 (86%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+GL I+ +RVNVDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV MQ
Sbjct: 12 TSGLGEIERDAERVNVDDKAMINARADVNQLLPLKYTWAWEKYLAGCNNHWMPTEVAMQA 71
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ALWKS++GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR L+NPECRQYLLRQAFE
Sbjct: 72 DIALWKSRDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLTNPECRQYLLRQAFE 131
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EAVH+HTFQYI SLGLDEGELFNMYREVPSITAK WAL+YTQ L +P F TGT +ADQ
Sbjct: 132 EAVHTHTFQYICESLGLDEGELFNMYREVPSITAKDAWALKYTQNLENPEFRTGTPEADQ 191
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
FL+DL FYV+FEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDVIN
Sbjct: 192 AFLRDLVAFYVIFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDVIN 251
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIKIENPHLW++EFQ + R ML EA LE+AY ETMP+G +GLNA CE+YM FI +RR
Sbjct: 252 QIKIENPHLWSEEFQAEVRQMLTEACELEVAYGRETMPRGVLGLNAELCEKYMHFITDRR 311
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
QIGL P+F TENPFPWMSE++DL+KEKNFFETRV EYQ G L WD
Sbjct: 312 AEQIGLAPIFGETENPFPWMSEMMDLQKEKNFFETRVIEYQTGGGLDWD 360
>gi|119478322|ref|ZP_01618353.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
proteobacterium HTCC2143]
gi|119448662|gb|EAW29907.1| ribonucleotide-diphosphate reductase beta subunit [marine gamma
proteobacterium HTCC2143]
Length = 422
Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats.
Identities = 213/352 (60%), Positives = 282/352 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G R+ V+DK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 71 LDVTAGLEELELGAARLTVEDKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 130
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWK NGL+DDER ++ R+LG+F++++SLVANN++LAIYRH++NPECRQYLLRQ
Sbjct: 131 MTADVALWKDPNGLSDDERRIVMRSLGYFSTADSLVANNLILAIYRHITNPECRQYLLRQ 190
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY + SL +DEGE+FNMYRE+PSI KA W+L++T +LS P+F TGT +
Sbjct: 191 AFEEAIHTHAYQYCVESLAMDEGEVFNMYRELPSIAKKAAWSLRHTHSLSDPNFKTGTPE 250
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQE L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 251 TDQELLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 310
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIK+ENP LW+++FQQ+ M+ E T LEI YA ++MP+G +G+NA E+Y+QFI+
Sbjct: 311 VINQIKLENPQLWSEKFQQEIIQMILEGTQLEIEYARDSMPRGVLGMNAAMMEEYLQFIS 370
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR +Q+GL ++ +NPFPWMSE++DL+KEKNFFETRV EYQ G L W+
Sbjct: 371 NRRLNQLGLPEQYQGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALNWE 422
>gi|153208286|ref|ZP_01946665.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
burnetii 'MSU Goat Q177']
gi|165919229|ref|ZP_02219315.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
burnetii RSA 334]
gi|212219268|ref|YP_002306055.1| ribonucleotide-diphosphate reductase subunit beta [Coxiella
burnetii CbuK_Q154]
gi|120576070|gb|EAX32694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
burnetii 'MSU Goat Q177']
gi|165917090|gb|EDR35694.1| ribonucleoside-diphosphate reductase, beta subunit [Coxiella
burnetii RSA 334]
gi|212013530|gb|ACJ20910.1| ribonucleoside-diphosphate reductase beta chain [Coxiella burnetii
CbuK_Q154]
Length = 401
Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats.
Identities = 222/349 (63%), Positives = 279/349 (79%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
TGL ++ G R+ VDDK+++N +D+NQL+P KY WAW+KYLS C NHWMP E+ M
Sbjct: 52 ATGLEQLEMGAARIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTA 111
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ALWK NGLT DER ++KR+LGFF++++SLVANN+VLAIYRH++NPECRQYLLRQAFE
Sbjct: 112 DIALWKDPNGLTADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFE 171
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
EA+H+H +QYII SLGLDE E+FNMYRE+P+++ KA WAL YTQ+L+ P+F TGT + D+
Sbjct: 172 EALHTHAYQYIIESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDR 231
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
L+DL FYVVFEG++FY GF QIL++GR KM G +EQ+QYI+RDES+H+NFGIDVIN
Sbjct: 232 RLLRDLIAFYVVFEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVIN 291
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIKIENPHLW K FQ++ M+ E LE YA +TMP+G +GLNA + Y+Q+IANRR
Sbjct: 292 QIKIENPHLWNKNFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRR 351
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
C QIGL F +N FPWMSE++DLKKEKNFFETRV EYQ G LKWD
Sbjct: 352 CAQIGLPEQFPGAKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400
>gi|187930114|ref|YP_001900601.1| ribonucleotide-diphosphate reductase subunit beta [Ralstonia
pickettii 12J]
gi|187727004|gb|ACD28169.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12J]
Length = 402
Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats.
Identities = 209/338 (61%), Positives = 259/338 (76%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+A WK NGL
Sbjct: 65 RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIATWKDPNGL 124
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 185 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 245 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 304
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGL+ LF
Sbjct: 305 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALFP 364
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402
>gi|300690381|ref|YP_003751376.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Ralstonia solanacearum PSI07]
gi|299077441|emb|CBJ50067.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Ralstonia solanacearum PSI07]
Length = 402
Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats.
Identities = 210/338 (62%), Positives = 260/338 (76%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL
Sbjct: 65 RRVNAADKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 124
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 125 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 184
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 185 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 244
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 245 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 304
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGL+ LF
Sbjct: 305 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKGYLRFICNRRCQQIGLDALFP 364
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 402
>gi|326315613|ref|YP_004233285.1| ribonucleoside-diphosphate reductase [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323372449|gb|ADX44718.1| Ribonucleoside-diphosphate reductase [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 387
Score = 335 bits (860), Expect = 4e-90, Method: Composition-based stats.
Identities = 206/339 (60%), Positives = 260/339 (76%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG
Sbjct: 49 HRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 108
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 109 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 168
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDE E+FN Y EV SI K + + + + + P F TGT + DQ L+ L VF
Sbjct: 169 IVESLGLDESEIFNAYNEVDSIRNKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIVFA 228
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLW
Sbjct: 229 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLW 288
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+++ + + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF
Sbjct: 289 TAEFKEEIKGLFMKAVELEYQYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALF 348
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 349 PNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387
>gi|121595925|ref|YP_987821.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax sp.
JS42]
gi|222112113|ref|YP_002554377.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax
ebreus TPSY]
gi|120608005|gb|ABM43745.1| Ribonucleoside-diphosphate reductase [Acidovorax sp. JS42]
gi|221731557|gb|ACM34377.1| Ribonucleoside-diphosphate reductase [Acidovorax ebreus TPSY]
Length = 396
Score = 335 bits (860), Expect = 4e-90, Method: Composition-based stats.
Identities = 207/339 (61%), Positives = 262/339 (77%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+RV+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG
Sbjct: 58 HRRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 117
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 118 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 177
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EV SI K + + + + + P FTTGT ++DQ L+ L VF
Sbjct: 178 IVESLGLDEGEIFNAYNEVQSIRDKDEFLIPFIEAIMDPRFTTGTPESDQTLLKSLIVFA 237
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLW
Sbjct: 238 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLW 297
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + + + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF
Sbjct: 298 TAEFKDEIKALFIKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALF 357
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 358 PNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 396
>gi|291615085|ref|YP_003525242.1| ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus
ES-1]
gi|291585197|gb|ADE12855.1| Ribonucleoside-diphosphate reductase [Sideroxydans lithotrophicus
ES-1]
Length = 382
Score = 335 bits (860), Expect = 4e-90, Method: Composition-based stats.
Identities = 211/342 (61%), Positives = 268/342 (78%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
R+ V+DKR++N+ +DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK+
Sbjct: 41 STSTGRIRVEDKRIINSSADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSADIALWKN 100
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
NGLTDDER ++KRNLGFF +++SL ANNI L YRH++NPECRQ+LLRQAFEEA+H+H
Sbjct: 101 PNGLTDDERRLVKRNLGFFTTADSLAANNIALGTYRHITNPECRQFLLRQAFEEAIHTHA 160
Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+QYI+ SLGLDEGE+FNMY EV SI K + L + L++P F TGT + DQ+ L+ L
Sbjct: 161 YQYIVESLGLDEGEVFNMYHEVQSIRDKDEFLLPFIDVLTNPDFKTGTPENDQKLLRSLI 220
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+HLNFG+DVINQIK+ENP
Sbjct: 221 VFACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHLNFGVDVINQIKLENP 280
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
HLWT F+++ R ++ + LE YA +TMP+G +GLNA ++Y++FIANRRC QIG++
Sbjct: 281 HLWTPAFREEVRGLIQKGVELEYRYAEDTMPRGVLGLNAGMFKEYLRFIANRRCQQIGVD 340
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L++ NPFPWM+E+IDLKKEKNFFETRVTEYQ G L WD
Sbjct: 341 MLYQGATNPFPWMAEMIDLKKEKNFFETRVTEYQTGGALSWD 382
>gi|126640804|ref|YP_001083788.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii ATCC 17978]
gi|322506921|gb|ADX02375.1| nrdB [Acinetobacter baumannii 1656-2]
gi|323516789|gb|ADX91170.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii TCDC-AB0715]
Length = 361
Score = 335 bits (860), Expect = 4e-90, Method: Composition-based stats.
Identities = 222/351 (63%), Positives = 281/351 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL ++ G +RV VDDK M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 11 LDVAPGLEELEMGAQRVQVDDKAMINCRADLNQLVPFKYEWAWQKYLDGCANHWMPQEVN 70
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS+NGLT+DER ++ R+LGFF++++SLVANN+VLAIYRH++NPECRQY+LRQ
Sbjct: 71 MNHDIALWKSENGLTEDERTIVMRSLGFFSTADSLVANNLVLAIYRHITNPECRQYILRQ 130
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYRE+PS+ KA W L+YTQ+LS P+F TGT +
Sbjct: 131 AFEEAIHTHAYQYCIESLGMDEGEVFNMYREIPSVARKAAWGLKYTQSLSDPTFHTGTPE 190
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 191 NDQRLLRNLIAFYCVLEGIFFYCGFTQILSMGRRNKMNGVAEQFQYILRDESMHLNFGID 250
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT EFQQ+ M+ E T+LEI YA +TMP+G +G+NA E+Y++FI
Sbjct: 251 MINQIKIENPHLWTAEFQQEVIQMILEGTMLEIEYARDTMPRGVLGMNASMMEEYLKFIC 310
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NRR Q+GL F NPF WMSE++DL+KEKNFFETRVT+YQ G L W
Sbjct: 311 NRRLSQLGLPEQFAGVTNPFAWMSEMMDLRKEKNFFETRVTDYQTGGALSW 361
>gi|254429337|ref|ZP_05043044.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp.
DG881]
gi|196195506|gb|EDX90465.1| ribonucleoside-diphosphate reductase, beta subunit [Alcanivorax sp.
DG881]
Length = 355
Score = 335 bits (860), Expect = 4e-90, Method: Composition-based stats.
Identities = 219/352 (62%), Positives = 278/352 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
M G++ ++ RV VDDKRM+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 4 MDIEEGVAELEGASGRVEVDDKRMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 63
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M DLALWK +GLTDDER ++KRNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ
Sbjct: 64 MNADLALWKKADGLTDDERRIVKRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQ 123
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+FEEA+H+H +QY I SLG+DEGE+FNMY+E+PS+ KA W +QYT+ LS P FTTGT +
Sbjct: 124 SFEEAIHTHAYQYCIESLGMDEGEIFNMYQEIPSVAKKAQWGIQYTRDLSDPEFTTGTVE 183
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+ L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+H+NFGID
Sbjct: 184 TDKALLENLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHVNFGID 243
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
VINQIK+ENPHLW + + K+ M+ E LEI YA +TMP+G +G+NA E+Y+QFIA
Sbjct: 244 VINQIKLENPHLWDAQMRDKATQMILEGAELEIQYARDTMPRGVLGMNAAMMEEYLQFIA 303
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR Q+GL FK NPFPWMSE++DL+KEKNFFETRVTEYQ G L W+
Sbjct: 304 NRRLAQLGLPEQFKGVNNPFPWMSEIMDLRKEKNFFETRVTEYQVGGALSWE 355
>gi|332286774|ref|YP_004418685.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp.
T7-7]
gi|330430727|gb|AEC22061.1| ribonucleoside-diphosphate reductase beta chain [Pusillimonas sp.
T7-7]
Length = 387
Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats.
Identities = 209/340 (61%), Positives = 263/340 (77%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
G RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D++LWK+ N
Sbjct: 48 GSGRVRAADKRIINGKTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDISLWKNPN 107
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
GLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +Q
Sbjct: 108 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQ 167
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
YI+ SL LDE E+FN Y EVPSI AK + + + ++ P F TGT +ADQ L+ L VF
Sbjct: 168 YIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPHFQTGTPEADQTLLKSLIVF 227
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN IK+ENPHL
Sbjct: 228 ACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPHL 287
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
WT EF+++ R + +A LE AYA +TMP+G +GLNA + Y++FIANRRC QIGLEPL
Sbjct: 288 WTAEFREELRELFKKAVDLEYAYAEDTMPRGVLGLNASMFKSYLRFIANRRCQQIGLEPL 347
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
F ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 348 FGQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGALSWE 387
>gi|85714830|ref|ZP_01045816.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A]
gi|85698316|gb|EAQ36187.1| ribonucleotide reductase [Nitrobacter sp. Nb-311A]
Length = 389
Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats.
Identities = 270/351 (76%), Positives = 297/351 (84%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A+ TGL I G RV VDDKRM+NAR+DVNQLLP KY WAWEKYLS CNNHWMPTEV M
Sbjct: 39 ADATGLGDIDRGAARVRVDDKRMINARADVNQLLPFKYRWAWEKYLSGCNNHWMPTEVSM 98
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
Q D+ALWKS++GLTDDER M+KRNLGFFA+SESLVANNIVLAIYRHL+NPECRQYLLRQA
Sbjct: 99 QADIALWKSRDGLTDDERRMVKRNLGFFAASESLVANNIVLAIYRHLTNPECRQYLLRQA 158
Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL++T+ L P F TGT +A
Sbjct: 159 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALKHTRHLDDPGFKTGTPEA 218
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
DQ FL+DL FYVVFEGMWFYTGF QILSLGR NKM+GIAEQYQYI+RDES+HLNFGIDV
Sbjct: 219 DQAFLRDLVAFYVVFEGMWFYTGFVQILSLGRRNKMIGIAEQYQYILRDESIHLNFGIDV 278
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
INQIKIENPHLWTK FQ + R ML A LE AY +TMP+GF+GLNA CE YM IAN
Sbjct: 279 INQIKIENPHLWTKTFQDEVRAMLKNAAELEAAYGRDTMPRGFLGLNAALCETYMHVIAN 338
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RRC Q+GL P+F T+NPFPWMSE +DLKKEKNFFETRV EYQ G L WD
Sbjct: 339 RRCAQLGLAPVFAETDNPFPWMSEAMDLKKEKNFFETRVIEYQNGGALAWD 389
>gi|121606275|ref|YP_983604.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas
naphthalenivorans CJ2]
gi|120595244|gb|ABM38683.1| Ribonucleoside-diphosphate reductase [Polaromonas naphthalenivorans
CJ2]
Length = 387
Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats.
Identities = 209/344 (60%), Positives = 260/344 (75%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
I A KRV DKR++N ++DVNQL+P KY WAWEKYL++C NHWMP EV M D+ALW
Sbjct: 44 EIPAKAKRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLASCANHWMPQEVNMTRDIALW 103
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K NGL+DDER ++ RNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+
Sbjct: 104 KDPNGLSDDERRLVMRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHT 163
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H +QYI SLGLDEGE+FN Y EV SI K + + + + +S P F TGT ++DQ L+
Sbjct: 164 HAYQYITESLGLDEGEIFNAYNEVQSIKDKDQFLIPFIEAISDPGFKTGTLESDQTLLKS 223
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+E
Sbjct: 224 LIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLE 283
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP LWT EF+ + + +A LE YA +TMP+G +GLNA + Y+++IANRR QIG
Sbjct: 284 NPQLWTAEFKAEINALFMKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIG 343
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
LE LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 344 LETLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387
>gi|149927167|ref|ZP_01915424.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp.
MED105]
gi|149824106|gb|EDM83327.1| ribonucleotide-diphosphate reductase beta subunit [Limnobacter sp.
MED105]
Length = 399
Score = 335 bits (859), Expect = 6e-90, Method: Composition-based stats.
Identities = 204/341 (59%), Positives = 257/341 (75%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
A RVN DKR++N +DVNQL+P KY WAWEKYLS C NHWMP E+ M D+ALWK
Sbjct: 59 AKAGRVNAADKRVINGTTDVNQLVPFKYKWAWEKYLSQCANHWMPQEINMDRDIALWKDP 118
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
NGLT+DERL++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAF+EA+H+H +
Sbjct: 119 NGLTEDERLIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFDEAIHTHAY 178
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
QYI+ SLG+ E E FN Y E+ I AK ++ L + L+ PSF TGT +ADQ L+ L
Sbjct: 179 QYIVESLGIPEAETFNAYNEISCIKAKDDFLLPFIDVLTDPSFKTGTLEADQTLLKSLIA 238
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
F + EGM+FY GF QIL+LGR NKM+G AEQ+QYI+RDES H FGID+IN +K+ENPH
Sbjct: 239 FACIMEGMFFYVGFVQILALGRQNKMIGAAEQFQYILRDESAHCTFGIDLINTVKLENPH 298
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
LWT EF+++ + M +A LE AYA +TMP+G +GLN+ +YM+FI NRR +QIGL
Sbjct: 299 LWTPEFKEEIKAMFRKAVELEHAYAVDTMPRGVLGLNSAQFMEYMKFICNRRSNQIGLGT 358
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L++ NPFPWMSE++DLKKE NFFE RVTEYQ G L WD
Sbjct: 359 LYEGATNPFPWMSEMMDLKKETNFFERRVTEYQTGGALSWD 399
>gi|194290770|ref|YP_002006677.1| ribonucleotide-diphosphate reductase subunit beta [Cupriavidus
taiwanensis LMG 19424]
gi|193224605|emb|CAQ70616.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Cupriavidus taiwanensis LMG 19424]
Length = 396
Score = 335 bits (858), Expect = 7e-90, Method: Composition-based stats.
Identities = 211/338 (62%), Positives = 260/338 (76%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+RVN DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGL
Sbjct: 59 RRVNAADKRVINGSTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGL 118
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T+DER +IKRNLGFF +++SL ANNIVL YR ++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 119 TEDERRIIKRNLGFFVTADSLAANNIVLGTYRQITAPECRQYLLRQAFEEAIHTHAYQYI 178
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ SLGL+E E+FN Y EV SI K + + + TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 179 VESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFKTGTPENDQKLLKSLIVFAC 238
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH NFGID+INQIK+ENPHLWT
Sbjct: 239 IMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHCNFGIDLINQIKLENPHLWT 298
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
EF+ + + +A LE YA +TMP+G +GLNAP + Y++FI NRRC QIGL+ LF
Sbjct: 299 AEFKAEITELFKKAVDLEYRYAEDTMPRGVLGLNAPMFKSYLRFICNRRCQQIGLDQLFP 358
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 359 NEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 396
>gi|329902475|ref|ZP_08273120.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Oxalobacteraceae bacterium IMCC9480]
gi|327548767|gb|EGF33404.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Oxalobacteraceae bacterium IMCC9480]
Length = 416
Score = 335 bits (858), Expect = 7e-90, Method: Composition-based stats.
Identities = 212/345 (61%), Positives = 263/345 (76%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
P +R+N DKR++N +DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ L
Sbjct: 72 EPKADPARRMNAADKRIINGNTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIEL 131
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
WKS NGLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H
Sbjct: 132 WKSPNGLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIH 191
Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+H +QYI SLGLDE E+FN Y EV SI K + + + L+ P FTTGT DQ+ L+
Sbjct: 192 THAYQYITESLGLDEAEIFNAYHEVKSIRDKDEFLIPFIDALTDPLFTTGTTINDQKLLK 251
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
L VF + EG++FY GFAQIL+LGR NKMVG AEQYQYI+RDES+H NFGID++N IK+
Sbjct: 252 SLIVFSCLMEGLFFYVGFAQILALGRQNKMVGAAEQYQYILRDESMHCNFGIDLVNTIKM 311
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
ENPHLWT EF+ + + + A LE YA +TMP+G +GLNAP + Y++FIANRR QI
Sbjct: 312 ENPHLWTPEFRDEIKALFLTAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQI 371
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
GLEP+F+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 372 GLEPMFENEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416
>gi|53720599|ref|YP_109585.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
pseudomallei K96243]
gi|53726102|ref|YP_104055.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
mallei ATCC 23344]
gi|52211013|emb|CAH37001.1| ribonucleoside-diphosphate reductase beta chain [Burkholderia
pseudomallei K96243]
gi|52429525|gb|AAU50118.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderia
mallei ATCC 23344]
Length = 350
Score = 334 bits (857), Expect = 9e-90, Method: Composition-based stats.
Identities = 217/339 (64%), Positives = 269/339 (79%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG
Sbjct: 12 EARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 71
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 72 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 131
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+FTTGT +ADQ+ L+ L VF
Sbjct: 132 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFTTGTLEADQKLLKSLIVFA 191
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 192 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 251
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QIGL+PLF
Sbjct: 252 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 311
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 312 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 350
>gi|167580513|ref|ZP_02373387.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
thailandensis TXDOH]
gi|167618621|ref|ZP_02387252.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
thailandensis Bt4]
gi|257137870|ref|ZP_05586132.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
thailandensis E264]
Length = 350
Score = 334 bits (857), Expect = 9e-90, Method: Composition-based stats.
Identities = 216/339 (63%), Positives = 268/339 (79%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG
Sbjct: 12 EARVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNG 71
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 72 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 131
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EVPSI AK + + + TL+ P+F TGT +ADQ+ L+ L VF
Sbjct: 132 IVESLGLDEGEIFNAYHEVPSIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFA 191
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLW
Sbjct: 192 CIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLW 251
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + R + A LE YA +TMP+G +GLNA + Y++FI+NRRC QIGL+PLF
Sbjct: 252 TAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFISNRRCQQIGLDPLF 311
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 312 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 350
>gi|319791701|ref|YP_004153341.1| ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS]
gi|315594164|gb|ADU35230.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus EPS]
Length = 411
Score = 334 bits (857), Expect = 9e-90, Method: Composition-based stats.
Identities = 206/338 (60%), Positives = 256/338 (75%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGL
Sbjct: 74 QRVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGL 133
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 134 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 193
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ SLGLDE E+FN Y EV SI K + L + +S P F TGT + DQ L+ L VF
Sbjct: 194 VESLGLDESEIFNAYNEVQSIREKDQFLLPFIDAISDPHFKTGTHETDQTLLKSLIVFAC 253
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT
Sbjct: 254 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWT 313
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
EF+ + + + A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF
Sbjct: 314 PEFKAEIKDLFMRAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFP 373
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 374 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 411
>gi|331006663|ref|ZP_08329944.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
proteobacterium IMCC1989]
gi|330419531|gb|EGG93916.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [gamma
proteobacterium IMCC1989]
Length = 444
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 280/352 (79%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ G+ ++ G RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 93 IDPTPGIEELEMGAARVGVDEKAMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 152
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D++LWK +GL+DDER +I R+LG+F++++SLVANN+VLA+YR ++NPECRQYLLRQ
Sbjct: 153 MTADISLWKDPDGLSDDERRIIMRSLGYFSTADSLVANNLVLAVYRLITNPECRQYLLRQ 212
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SLG+DEGE+FNMYREVPS+ KA W++ +TQ +S P+F TGT +
Sbjct: 213 AFEEAIHTHAYQYCIESLGMDEGEIFNMYREVPSVANKAAWSIAHTQGISDPTFNTGTTE 272
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQE L++L FY V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 273 TDQELLRNLIGFYAVTEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 332
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIK+ENPHLWT+EF+ + M+ E T LEIAYA +TMP+G +G+NA E+Y+QFI+
Sbjct: 333 IINQIKLENPHLWTEEFKAEVTQMVLEGTELEIAYARDTMPRGVLGMNAAMMEEYLQFIS 392
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR Q+GL + +NPFPWMSE++DL+KEKNFFETRV EYQ G L W+
Sbjct: 393 NRRLAQLGLTEQYPGAQNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWE 444
>gi|74317993|ref|YP_315733.1| ribonucleotide-diphosphate reductase subunit beta [Thiobacillus
denitrificans ATCC 25259]
gi|74057488|gb|AAZ97928.1| ribonucleoside-diphosphate reductase beta chain [Thiobacillus
denitrificans ATCC 25259]
Length = 376
Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats.
Identities = 204/339 (60%), Positives = 258/339 (76%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
RV DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP EV M D+A WK
Sbjct: 38 TTRVRASDKRVINGATDVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIAQWKDPTA 97
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QY
Sbjct: 98 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 157
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDE E+FN Y E+ SI K ++ + + TL++P F TGT + DQ+ L+ L VF
Sbjct: 158 IVESLGLDEAEIFNAYHEIESIRDKDDFLIPFIDTLTNPEFKTGTPENDQKLLKSLIVFA 217
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK ENPHLW
Sbjct: 218 CIMEGIFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTIKQENPHLW 277
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + RT++ + LE YA +TMP+G +GLN+ ++Y++FI+NRRC QIGL+ +F
Sbjct: 278 TSEFKAEIRTLIQKGVELEFRYAEDTMPRGVLGLNSAQFKEYLRFISNRRCQQIGLDEMF 337
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NPFPWM+E+IDLKKEKNFFETRVTEYQ G L WD
Sbjct: 338 PGVSNPFPWMAEMIDLKKEKNFFETRVTEYQTGGALSWD 376
>gi|325983070|ref|YP_004295472.1| ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212]
gi|325532589|gb|ADZ27310.1| Ribonucleoside-diphosphate reductase [Nitrosomonas sp. AL212]
Length = 381
Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats.
Identities = 208/338 (61%), Positives = 267/338 (78%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+R+ V+DK+++N +DVNQL+P KY WAW+KYL AC NHWMP E+ M D+ALW+ NGL
Sbjct: 44 RRIAVEDKQIINCNADVNQLVPFKYKWAWDKYLGACANHWMPQEISMSRDIALWRDPNGL 103
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QYI
Sbjct: 104 TEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQYI 163
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ SLGLDEGE+FN Y EV SI K + + + TL++P F TGT + DQ+ L+ L VF
Sbjct: 164 VESLGLDEGEIFNAYHEVSSIRDKDEFLIPFIDTLTNPHFKTGTLETDQQLLRSLIVFAC 223
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVINQIK+ENP LWT
Sbjct: 224 IMEGLFFYVGFTQILALGRQNKMTGSAEQYQYILRDESMHCNFGIDVINQIKMENPQLWT 283
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
K F+++ ++ +A LE YA +TMP+G +G+NAP ++Y+++IANRRC QIGL+ L+
Sbjct: 284 KAFREEIAALMQKAVALEYRYAEDTMPRGVLGMNAPMFKEYLRYIANRRCQQIGLDTLYP 343
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD
Sbjct: 344 NANNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 381
>gi|319764328|ref|YP_004128265.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
BC]
gi|330826374|ref|YP_004389677.1| ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
K601]
gi|317118889|gb|ADV01378.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
BC]
gi|329311746|gb|AEB86161.1| Ribonucleoside-diphosphate reductase [Alicycliphilus denitrificans
K601]
Length = 396
Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats.
Identities = 203/339 (59%), Positives = 260/339 (76%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+RV+ DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NG
Sbjct: 58 HRRVSAVDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMTRDIALWKDPNG 117
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 118 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 177
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDEGE+FN Y EV SI AK + + + + + P+F TGT + DQ L+ L VF
Sbjct: 178 IVESLGLDEGEIFNAYNEVESIRAKDEFLIPFIEAIMDPAFKTGTPENDQTLLKSLIVFA 237
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LW
Sbjct: 238 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPQLW 297
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T F+ + + + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGL+ LF
Sbjct: 298 TPAFKDEIKGLFLKAVDLEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLDALF 357
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 358 PNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 396
>gi|239813962|ref|YP_002942872.1| ribonucleotide-diphosphate reductase subunit beta [Variovorax
paradoxus S110]
gi|239800539|gb|ACS17606.1| Ribonucleoside-diphosphate reductase [Variovorax paradoxus S110]
Length = 391
Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats.
Identities = 206/337 (61%), Positives = 258/337 (76%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT
Sbjct: 55 RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 114
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 115 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 174
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
SLGLDE E+FN Y EVPSI K + + + +S P+F TGT + DQ L+ L VF +
Sbjct: 175 ESLGLDESEIFNAYNEVPSIREKDQFLIPFIDAISDPNFKTGTHETDQTLLKSLIVFACL 234
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP LWT
Sbjct: 235 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPGLWTP 294
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
EF+ + + + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF
Sbjct: 295 EFKAEIKALFLKAVELEYKYAEDTMPRGVLGMNASMFKGYLRYIANRRAQQIGLETLFPN 354
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 355 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 391
>gi|330983931|gb|EGH82034.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 388
Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats.
Identities = 216/353 (61%), Positives = 283/353 (80%), Gaps = 1/353 (0%)
Query: 1 MANNTGLSPIQAG-EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M G ++ G + RV V K+M+NAR+DVNQL+P KY WAW+KYL C+NHWMP EV
Sbjct: 36 MDIGAGERELEEGRQNRVQVGQKQMINARADVNQLVPFKYEWAWQKYLDGCSNHWMPQEV 95
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
M D+ALWK NGLTDDERL++KRNLG+F++++SLVANN+VLA+YR ++NPECRQY+LR
Sbjct: 96 NMSADIALWKDPNGLTDDERLILKRNLGYFSTADSLVANNLVLAVYRLITNPECRQYILR 155
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
QAFEEA+H+H +QY + SLGLD+GE+FNMY+EVPS+ KA W++++ ++ P+F TGT
Sbjct: 156 QAFEEAIHTHAYQYCVESLGLDDGEIFNMYQEVPSVARKAAWSIKHMDAITDPAFQTGTV 215
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+AD FL++L +Y V EG++FY GF Q LS+GR NK+VG+AEQ+QYI+RDES+HLNFGI
Sbjct: 216 EADTTFLKNLIAYYCVTEGIFFYCGFTQTLSMGRRNKLVGVAEQFQYILRDESMHLNFGI 275
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
D+INQIKIENPHLWT E ++++ M+ + T LEIAYA +TMP+G +G+NA E+Y+QFI
Sbjct: 276 DMINQIKIENPHLWTDELKREATVMIIQGTQLEIAYARDTMPRGVLGMNAAMMEEYLQFI 335
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ANRR QIGL ++ +NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 336 ANRRLTQIGLPEVYAGAKNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 388
>gi|119713586|gb|ABL97637.1| ribonucleotide-diphosphate reductase beta subunit [uncultured
marine bacterium EB0_39H12]
Length = 412
Score = 334 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 214/352 (60%), Positives = 274/352 (77%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ G ++ RV VDDK M+N R+D+NQL+P KY WAW+KYL NHWMP EV
Sbjct: 61 LDAKAGEEELEGLAGRVQVDDKAMINCRADLNQLVPFKYDWAWQKYLDGSANHWMPQEVN 120
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS +GLT+DER ++ RNLGFF++++SLVANN+VLAIYR ++NPECRQY+LRQ
Sbjct: 121 MTADIALWKSNDGLTEDERTIVMRNLGFFSTADSLVANNLVLAIYRLITNPECRQYILRQ 180
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
FEEA+H+H +QY I SLG+DEG +FNMYRE+PS+ KA+W L+YT+ +S P FTTGT +
Sbjct: 181 GFEEAIHTHAYQYCIESLGMDEGAIFNMYREIPSVAKKASWGLKYTKEISDPGFTTGTDE 240
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+ L++L FY V EG++FY GF QILS+GR NKM G AEQ+QYI+RDES+HLNFGID
Sbjct: 241 TDKLLLKNLIAFYCVLEGIFFYCGFTQILSMGRRNKMTGTAEQFQYILRDESMHLNFGID 300
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIK+ENPHLW ++ + ++ M+ E T LEI YA +TMP+G +G+NA E+Y+QFIA
Sbjct: 301 MINQIKLENPHLWDEQMRHEAAQMILEGTELEIQYARDTMPRGILGMNAGMMEEYLQFIA 360
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGLE F+ NPFPWMSE++DL+KEKNFFETRV EYQ G L WD
Sbjct: 361 NRRLVQIGLEEEFEGASNPFPWMSEIMDLRKEKNFFETRVIEYQTGGALTWD 412
>gi|134095932|ref|YP_001101007.1| ribonucleotide-diphosphate reductase subunit beta [Herminiimonas
arsenicoxydans]
gi|133739835|emb|CAL62886.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
reductase small subunit) [Herminiimonas arsenicoxydans]
Length = 395
Score = 334 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 208/340 (61%), Positives = 266/340 (78%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+R++ DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ N
Sbjct: 56 PTRRMDAADKRIINGKTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 115
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
GLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +Q
Sbjct: 116 GLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 175
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
YI+ SLGLDEGE+FN Y E+ SI K + + + L+ P+FTTGT + DQ L+ L VF
Sbjct: 176 YIVESLGLDEGEIFNAYNEIESIRDKDQFLIPFIDVLTDPNFTTGTTENDQTLLRSLIVF 235
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++FY GFAQIL+LGR NKM+G AEQYQYI+RDES+H NFGID+IN IK+ENPHL
Sbjct: 236 ACLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHL 295
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
WT +F+ + + + A LE YA +TMP+G +GLNAP + Y++FIANRR QIGLEP+
Sbjct: 296 WTPQFRDEIKALFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPM 355
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
F+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 356 FEQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 395
>gi|34497739|ref|NP_901954.1| ribonucleotide-diphosphate reductase subunit beta [Chromobacterium
violaceum ATCC 12472]
gi|34103595|gb|AAQ59956.1| ribonucleoside-diphosphate reductase system [Chromobacterium
violaceum ATCC 12472]
Length = 360
Score = 334 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 204/340 (60%), Positives = 257/340 (75%), Gaps = 1/340 (0%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
G RVNV DK+++N +DVNQL+P K+ WAWEKYL+ C NHWMP EV MQ D+ WK+
Sbjct: 22 GTGRVNVVDKKVINGTTDVNQLVPFKHKWAWEKYLAQCANHWMPQEVNMQRDIEQWKT-G 80
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
LT+DE ++KRNLGFF +++SL ANNIVL YR +++PECRQ+LLRQAF+EA+H+H +Q
Sbjct: 81 QLTEDEMRIVKRNLGFFVTADSLAANNIVLGTYRQITSPECRQFLLRQAFDEAIHTHAYQ 140
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
YI+ SLGLDEGE+FN Y EV SI K + + + L +P F TGT + DQ+ L+ L VF
Sbjct: 141 YIVESLGLDEGEVFNAYHEVKSIRDKDEFLIPFIDVLCNPEFKTGTVENDQKLLKSLIVF 200
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK+ENP L
Sbjct: 201 ACIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINTIKLENPLL 260
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
WT F+ + + +A LE AYA +TMP+G +GLNA ++Y++FIANRR QIGL+PL
Sbjct: 261 WTDSFKAEIVDLFKQAVELEYAYAEDTMPRGVLGLNASMFKEYLRFIANRRMQQIGLDPL 320
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
F NPFPWMSE+IDLKKEKNFFETRVTEYQ G L WD
Sbjct: 321 FPGVNNPFPWMSEMIDLKKEKNFFETRVTEYQTGGALSWD 360
>gi|317402620|gb|EFV83180.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
xylosoxidans C54]
Length = 399
Score = 334 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 210/350 (60%), Positives = 268/350 (76%), Gaps = 1/350 (0%)
Query: 4 NTGLSPIQAGEK-RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
GL+ RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M
Sbjct: 50 AAGLTASGNATSQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMS 109
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D+ALWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAF
Sbjct: 110 RDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAF 169
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
EEA+H+H +QYI+ SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +AD
Sbjct: 170 EEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEAD 229
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
Q L+ L VF + EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+I
Sbjct: 230 QTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLI 289
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
N +K+ENPHLWT EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANR
Sbjct: 290 NTVKLENPHLWTPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANR 349
Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RC QIG+EPL+ ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 350 RCQQIGIEPLYPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399
>gi|91787004|ref|YP_547956.1| ribonucleotide-diphosphate reductase subunit beta [Polaromonas sp.
JS666]
gi|91696229|gb|ABE43058.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666]
Length = 406
Score = 334 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 208/337 (61%), Positives = 258/337 (76%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
RV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT
Sbjct: 70 RVKASDKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLT 129
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 130 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIT 189
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
SLGLDE E+FN Y EV SI K + + + + +S P F TGT +ADQ L+ L VF +
Sbjct: 190 ESLGLDEAEIFNAYNEVQSIKDKDQFLIPFIEVISDPHFKTGTTEADQTLLKSLIVFACL 249
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT
Sbjct: 250 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTA 309
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
EF+ + + + +A LE YA +TMP+G +GLNA + Y+++IANRR QIGLE LF
Sbjct: 310 EFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLETLFPN 369
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 370 EENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 406
>gi|167586060|ref|ZP_02378448.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
ubonensis Bu]
Length = 403
Score = 334 bits (855), Expect = 2e-89, Method: Composition-based stats.
Identities = 213/337 (63%), Positives = 266/337 (78%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGLT
Sbjct: 67 RVNVADKRIINGQTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMSRDIALWKDPNGLT 126
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 127 EDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIV 186
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
SLGLDEGE+FN Y EV SI AK + + + TL+ P+F TGT +ADQ+ L+ L VF +
Sbjct: 187 ESLGLDEGEIFNAYHEVASIRAKDEFLIPFIHTLTDPAFKTGTLEADQKLLKSLIVFACI 246
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENPHLWT
Sbjct: 247 MEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPHLWTA 306
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
EF+ + R + +A LE YA +TMP+G +GLNA + Y++FI NRRC QIGL+PL+
Sbjct: 307 EFRAEIRELFKQAVDLEYRYAEDTMPRGVLGLNASMFKSYLRFICNRRCQQIGLDPLYPN 366
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 367 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 403
>gi|255019430|ref|ZP_05291537.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Acidithiobacillus caldus ATCC 51756]
gi|254971128|gb|EET28583.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Acidithiobacillus caldus ATCC 51756]
Length = 345
Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats.
Identities = 210/340 (61%), Positives = 272/340 (80%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
RV V+DKR++N R+DVNQL+P KY WAW+KYL+AC NHWMP EV M D+ALWK
Sbjct: 5 ATARVRVEDKRIINGRADVNQLVPFKYQWAWDKYLAACANHWMPQEVQMARDIALWKDPK 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
GLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +Q
Sbjct: 65 GLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
YI+ SLGLDEGE+FNMY EVPS+ AK + + + +TL+ P F TGT++ DQ+ L+ L VF
Sbjct: 125 YIVESLGLDEGEIFNMYHEVPSVRAKDEFLIPFIETLADPDFQTGTRENDQKLLRSLIVF 184
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+INQIK+ENP L
Sbjct: 185 ATIMEGLFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLINQIKLENPQL 244
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
WT+ FQQ+ ++ + LE AYA +TMP+G +GLNAP ++Y+++I NRR QIGL+P
Sbjct: 245 WTEGFQQEIVGLIRQGVELECAYADDTMPRGILGLNAPMFKEYVRYIGNRRLSQIGLKPQ 304
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
++ +NPFPWMSE++DLKKEKNFFE+RVT+YQ G L WD
Sbjct: 305 WENVQNPFPWMSEMMDLKKEKNFFESRVTDYQTGGALSWD 344
>gi|171057074|ref|YP_001789423.1| ribonucleotide-diphosphate reductase subunit beta [Leptothrix
cholodnii SP-6]
gi|170774519|gb|ACB32658.1| Ribonucleoside-diphosphate reductase [Leptothrix cholodnii SP-6]
Length = 402
Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats.
Identities = 208/338 (61%), Positives = 255/338 (75%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+RVNV DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+A WK NGL
Sbjct: 65 RRVNVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIATWKDPNGL 124
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
TDDER +IKRNLGFF +++SL ANNI L YRH++ PECRQ+LLRQAFEEA+H+H +QYI
Sbjct: 125 TDDERRLIKRNLGFFVTADSLAANNITLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYI 184
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ SLGLDE E+FN Y EV SI K + + Y + P F TGT + DQ L+ L VF
Sbjct: 185 VESLGLDESEIFNAYHEVASIREKDEFLIPYIDAIMDPHFKTGTPENDQTLLKSLIVFAC 244
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+IN IK+ENPHLWT
Sbjct: 245 LMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINAIKLENPHLWT 304
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
F+ + + + +A LE YA +TMP+G +GLNA + Y+++IANRR QIGLE LF
Sbjct: 305 PAFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRYIANRRATQIGLEELFP 364
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 365 NEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 402
>gi|145588393|ref|YP_001154990.1| ribonucleotide-diphosphate reductase subunit beta [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145046799|gb|ABP33426.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 394
Score = 332 bits (851), Expect = 4e-89, Method: Composition-based stats.
Identities = 207/337 (61%), Positives = 262/337 (77%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
RVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGLT
Sbjct: 58 RVNAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMNRDIALWKDPNGLT 117
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI+
Sbjct: 118 EDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 177
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
SLGLD+ E+FN Y E+ SI AK + + Y L++P+F TGT + DQ L+ L VF V
Sbjct: 178 ESLGLDQSEIFNAYNEIESIRAKDEFLIPYIDVLTNPNFKTGTLETDQTLLRSLIVFACV 237
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++FY GF QIL++GR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LWT
Sbjct: 238 MEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWTS 297
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
F+ + +++ +A LE YA +TMP+G +GLNAP + Y+++I NRRC QIGL+ +F
Sbjct: 298 AFKDEIKSIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGYLRYICNRRCLQIGLDAMFPN 357
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 358 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 394
>gi|30250346|ref|NP_842416.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas
europaea ATCC 19718]
gi|30181141|emb|CAD86334.1| Ribonucleotide reductase [Nitrosomonas europaea ATCC 19718]
Length = 382
Score = 332 bits (850), Expect = 7e-89, Method: Composition-based stats.
Identities = 216/339 (63%), Positives = 271/339 (79%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M D+ALWK NG
Sbjct: 44 HRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNG 103
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QY
Sbjct: 104 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQY 163
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ S+GLDEGE+FN Y E+ SI K + + + TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 164 IVESIGLDEGEIFNAYHEIGSIRDKDEFLIPFIDTLTDPSFRTGTLETDQQLLKSLIVFA 223
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGIDVINQIK+ENPHLW
Sbjct: 224 CIMEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKLENPHLW 283
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T+EF+++ ++ +A LE YA +TMP+G +GLNAP ++Y++FI NRR HQIGL+PLF
Sbjct: 284 TREFREEISALMRKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRFIINRRSHQIGLDPLF 343
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NPFPWMSE+IDLKKEKNFFETRV EYQ G L WD
Sbjct: 344 PEAGNPFPWMSEMIDLKKEKNFFETRVIEYQTGGVLSWD 382
>gi|300022335|ref|YP_003754946.1| ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans
ATCC 51888]
gi|299524156|gb|ADJ22625.1| Ribonucleoside-diphosphate reductase [Hyphomicrobium denitrificans
ATCC 51888]
Length = 374
Score = 331 bits (849), Expect = 7e-89, Method: Composition-based stats.
Identities = 266/351 (75%), Positives = 294/351 (83%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ TGL I RV VDDK M+NAR+DVNQLLPLKY WAWEKYL+ CNNHWMPTEV M
Sbjct: 24 EDATGLGNIDRNGGRVRVDDKAMINARADVNQLLPLKYRWAWEKYLAGCNNHWMPTEVSM 83
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
Q D+ALWKSK+GLT++ER MIKRNLGFFA+SESLVANNIVLAIYR+L+NPECRQYLLRQA
Sbjct: 84 QADIALWKSKDGLTEEERRMIKRNLGFFAASESLVANNIVLAIYRNLTNPECRQYLLRQA 143
Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
FEEAVH+HTFQYI+ SLGLDEGELFNMYREVPSIT KA WAL YT+ L PSF TGTK+
Sbjct: 144 FEEAVHTHTFQYIVESLGLDEGELFNMYREVPSITDKAAWALAYTKHLDDPSFKTGTKET 203
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
DQ FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYI+RDES+HLNFGIDV
Sbjct: 204 DQAFLRDLIAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQYQYILRDESIHLNFGIDV 263
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
INQIK EN HLW+K FQ + R ML +A LE AY +TMP G +GLN EQYM+FIAN
Sbjct: 264 INQIKAENAHLWSKAFQDEVRGMLRDAAQLEAAYGRDTMPTGLLGLNPGLTEQYMEFIAN 323
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RRC Q+GL P+FK ENPFPWMSE +DLKKEKNFFETRV EYQ G L W+
Sbjct: 324 RRCAQLGLTPVFKDRENPFPWMSEAMDLKKEKNFFETRVIEYQNGGALSWE 374
>gi|120609557|ref|YP_969235.1| ribonucleotide-diphosphate reductase subunit beta [Acidovorax
citrulli AAC00-1]
gi|120588021|gb|ABM31461.1| Ribonucleoside-diphosphate reductase [Acidovorax citrulli AAC00-1]
Length = 387
Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats.
Identities = 206/339 (60%), Positives = 260/339 (76%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG
Sbjct: 49 HRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 108
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 109 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 168
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDE E+FN Y EV SI K + + + + + P F TGT + DQ L+ L VF
Sbjct: 169 IVESLGLDESEIFNAYNEVDSIRHKDEFLIPFIEAIMDPDFKTGTPETDQTLLKSLIVFA 228
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLW
Sbjct: 229 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLW 288
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+++ + + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF
Sbjct: 289 TAEFKEEIKGLFMKAVELEYQYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALF 348
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 349 PNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 387
>gi|241764092|ref|ZP_04762129.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN]
gi|241366556|gb|EER61044.1| Ribonucleoside-diphosphate reductase [Acidovorax delafieldii 2AN]
Length = 398
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 208/339 (61%), Positives = 260/339 (76%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG
Sbjct: 60 HRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 119
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 120 LTDDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 179
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGLDE E+FN Y EV SI K + + + + + P+F TGT +ADQ L+ L VF
Sbjct: 180 IVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFKTGTPEADQRLLKSLIVFA 239
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLW
Sbjct: 240 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLW 299
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+ + + + A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF
Sbjct: 300 TAEFKAEIKALFMRAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLETLF 359
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 360 PNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD 398
>gi|160896947|ref|YP_001562529.1| ribonucleotide-diphosphate reductase subunit beta [Delftia
acidovorans SPH-1]
gi|160362531|gb|ABX34144.1| Ribonucleoside-diphosphate reductase [Delftia acidovorans SPH-1]
Length = 363
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 210/342 (61%), Positives = 262/342 (76%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK
Sbjct: 22 STTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKD 81
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H
Sbjct: 82 PNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHA 141
Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+QYI+ SLGLDEGE+FN Y EVPSI K + + + + + P+F TGT + DQ L+ L
Sbjct: 142 YQYIVESLGLDEGEIFNAYLEVPSIRDKDEFLIPFIEAIMDPAFKTGTFETDQTLLKSLI 201
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENP
Sbjct: 202 VFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENP 261
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
LWT EF+++ + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE
Sbjct: 262 QLWTPEFKEEITALFVKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLE 321
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 322 ALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363
>gi|121608466|ref|YP_996273.1| ribonucleotide-diphosphate reductase subunit beta
[Verminephrobacter eiseniae EF01-2]
gi|121553106|gb|ABM57255.1| Ribonucleoside-diphosphate reductase [Verminephrobacter eiseniae
EF01-2]
Length = 399
Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats.
Identities = 206/342 (60%), Positives = 258/342 (75%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
A ++RVN DKR++N ++DVNQL+PLKY WAWEKYL++C NHWMP EV M D+ALWK+
Sbjct: 58 DAAQRRVNAADKRIINGQTDVNQLVPLKYKWAWEKYLASCANHWMPQEVNMTRDIALWKT 117
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
GL+DDER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H
Sbjct: 118 PGGLSDDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHA 177
Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+QYI+ SLGLDE E+FN Y EV SI K + + + + + P F TG+ DQ L+ L
Sbjct: 178 YQYIVESLGLDESEIFNAYNEVRSIRDKDQFLIPFIEAIMDPHFHTGSAANDQTLLKSLI 237
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
VF + EG++FY GFAQIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP
Sbjct: 238 VFACLMEGLFFYVGFAQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENP 297
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
LWT F+ + + +A LE YA +TMP G +G+NA + Y+++IANRR QIGLE
Sbjct: 298 LLWTTAFKAEIEALFLQAVELEYRYAEDTMPHGVLGMNASMFKGYLRYIANRRATQIGLE 357
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
LF NPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 358 TLFPQETNPFPWMSEMIDLKKERNFFETRVIEYQSGGALCWD 399
>gi|299533977|ref|ZP_07047329.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas
testosteroni S44]
gi|298717886|gb|EFI58891.1| ribonucleotide-diphosphate reductase subunit beta [Comamonas
testosteroni S44]
Length = 363
Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats.
Identities = 210/351 (59%), Positives = 264/351 (75%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A + + KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M
Sbjct: 13 ATSAEAGASTSTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 72
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA
Sbjct: 73 TRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 132
Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
FEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P+F TGT +
Sbjct: 133 FEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPET 192
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
DQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+
Sbjct: 193 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 252
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
INQ+K+ENPHLWT EF+Q+ + +A LE YA +TMP+G +G+NA + Y+++IAN
Sbjct: 253 INQLKLENPHLWTAEFKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIAN 312
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RR QIGLE LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 313 RRATQIGLEELFPGEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363
>gi|221065168|ref|ZP_03541273.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1]
gi|220710191|gb|EED65559.1| Ribonucleoside-diphosphate reductase [Comamonas testosteroni KF-1]
Length = 363
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 210/351 (59%), Positives = 263/351 (74%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A + + KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M
Sbjct: 13 ATSAEAGASTSTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNM 72
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQA
Sbjct: 73 TRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQA 132
Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
FEEA+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + + + P+F TGT +
Sbjct: 133 FEEAIHTHAYQYIVESLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPET 192
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
DQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+
Sbjct: 193 DQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDL 252
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
INQ+K+ENPHLWT EF+Q+ + A LE YA +TMP+G +G+NA + Y+++IAN
Sbjct: 253 INQLKLENPHLWTAEFKQEITELFQRAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIAN 312
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RR QIGLE LF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 313 RRATQIGLEELFPGEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 363
>gi|293603286|ref|ZP_06685715.1| ribonucleotide-diphosphate reductase subunit beta subunit
[Achromobacter piechaudii ATCC 43553]
gi|292818321|gb|EFF77373.1| ribonucleotide-diphosphate reductase subunit beta subunit
[Achromobacter piechaudii ATCC 43553]
Length = 398
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 207/339 (61%), Positives = 264/339 (77%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+RV V DKR++N +DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ NG
Sbjct: 60 SQRVKVADKRIINGETDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNG 119
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 120 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 179
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +ADQ L+ L VF
Sbjct: 180 IVESLDLDEAEIFNAYNEVPSIRAKDQFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFA 239
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN +K+ENPHLW
Sbjct: 240 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLW 299
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T F+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANRRC QIG+EPL+
Sbjct: 300 TPAFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLY 359
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 360 PQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 398
>gi|114321252|ref|YP_742935.1| ribonucleotide-diphosphate reductase subunit beta [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227646|gb|ABI57445.1| Ribonucleoside-diphosphate reductase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 354
Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats.
Identities = 257/350 (73%), Positives = 296/350 (84%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
N TGL I+AG RV+VD+KRM+N R+DVNQLLPLKY WAWEKYL+ CNNHWMPTEVPM
Sbjct: 5 NATGLEAIEAGAHRVSVDEKRMINCRADVNQLLPLKYEWAWEKYLAGCNNHWMPTEVPMG 64
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D+ALW+ +GLT DERLMIKRNLGFFA+SESLVANNIVLAIYRH++NPECRQYLLRQAF
Sbjct: 65 ADIALWRHPDGLTADERLMIKRNLGFFATSESLVANNIVLAIYRHITNPECRQYLLRQAF 124
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
EEA+H+HTFQYI+ SL LDEGELFNMYREVPSIT KA WAL+YTQ L S F T +++
Sbjct: 125 EEAIHTHTFQYIVESLDLDEGELFNMYREVPSITDKAAWALKYTQNLESGHFDTTSREGA 184
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
Q FL+DL FYVVFEGMWFYTGFAQILSLGR NKM GIAE YQYI+RDES+HLNFGIDVI
Sbjct: 185 QSFLRDLVAFYVVFEGMWFYTGFAQILSLGRQNKMTGIAEMYQYILRDESIHLNFGIDVI 244
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
NQI+ ENP LWT +F+Q+ TML EA LE+AYA +TMP+G +GLNA CE+YM FI NR
Sbjct: 245 NQIRHENPELWTNDFEQEVLTMLREAVELEVAYARDTMPRGMLGLNADMCEEYMHFITNR 304
Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
RC Q+GL+ L+ NPFPWMSEV+DL+KEKNFFETRVT+Y+ G L+WD
Sbjct: 305 RCAQLGLKELYPGATNPFPWMSEVMDLQKEKNFFETRVTDYRTGGALQWD 354
>gi|255019898|ref|ZP_05291973.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Acidithiobacillus caldus ATCC 51756]
gi|254970678|gb|EET28165.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Acidithiobacillus caldus ATCC 51756]
Length = 374
Score = 330 bits (845), Expect = 2e-88, Method: Composition-based stats.
Identities = 209/338 (61%), Positives = 267/338 (78%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP EV M D+ALWK GL
Sbjct: 37 ERVRAEDKRIINGSADVNQLVPFKYHWAWDKYLAACANHWMPQEVQMARDIALWKDPKGL 96
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI
Sbjct: 97 TEDERRIVKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 156
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ S+GLDEGE+FNMY EVPSI AK + L + +TL+ PSF TGT + DQ+ L+ L VF
Sbjct: 157 VESIGLDEGEIFNMYHEVPSIRAKDEFLLPFIRTLTDPSFHTGTPENDQKLLRSLIVFAA 216
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+INQIK+ENP LWT
Sbjct: 217 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDLINQIKVENPDLWT 276
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
+ FQ++ +++ + LE AYA +TMP+G +GLNAP + Y+++I NRR Q+GL +
Sbjct: 277 EPFQEEIVSLIRKGVELECAYADDTMPRGVLGLNAPIFKDYVKYIGNRRLQQLGLPVQWA 336
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+NPFPWMSE++DLKKEKNFFETRVTEYQ G L WD
Sbjct: 337 GIQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWD 374
>gi|300309722|ref|YP_003773814.1| transmembrane ribonucleoside reductase small subunit
[Herbaspirillum seropedicae SmR1]
gi|300072507|gb|ADJ61906.1| transmembrane ribonucleoside reductase (small chain) protein
[Herbaspirillum seropedicae SmR1]
Length = 388
Score = 330 bits (845), Expect = 2e-88, Method: Composition-based stats.
Identities = 210/348 (60%), Positives = 266/348 (76%)
Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
G S +RVN DKR++N +DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D
Sbjct: 41 AGNSEQVDTTRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRD 100
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ LWK+ NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEE
Sbjct: 101 IELWKNPNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEE 160
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+H+H +QYI+ SLGLDE E+FN Y EV SI K + + + TL+ P F TGT + DQ+
Sbjct: 161 AIHTHAYQYIVESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQK 220
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
L+ L VF + EG++FY GF QIL+LGR NKM+G AEQYQYI+RDES+H NFGID+IN
Sbjct: 221 LLKSLIVFACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINT 280
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+K+ENPHLWT EF+++ +++ A LE YA +TMP+G +GLNAP + Y++FIANRR
Sbjct: 281 VKMENPHLWTPEFREEIKSLFLRAVELEYRYAEDTMPRGVLGLNAPMFKSYLRFIANRRA 340
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
QIGL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 341 QQIGLDPLFAQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 388
>gi|311103857|ref|YP_003976710.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
xylosoxidans A8]
gi|310758546|gb|ADP13995.1| ribonucleoside-diphosphate reductase subunit beta [Achromobacter
xylosoxidans A8]
Length = 399
Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats.
Identities = 208/339 (61%), Positives = 266/339 (78%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+RV V DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK+ NG
Sbjct: 61 SQRVKVADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNG 120
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QY
Sbjct: 121 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQY 180
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SL LDE E+FN Y EVPSI AK + + + ++ P+F TGT +ADQ L+ L VF
Sbjct: 181 IVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFKTGTPEADQTLLKSLIVFA 240
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QIL+LGR NKM G AEQY YI+RDES+H NFGID+IN +K+ENPHLW
Sbjct: 241 CLMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTVKLENPHLW 300
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EF+++ R + +A LE AYA +TMP+G +GLNAP + Y++FIANRRC QIG+EPL+
Sbjct: 301 TPEFREEIRELFRKAVELEYAYAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLY 360
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWM+E+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 361 PQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE 399
>gi|198284354|ref|YP_002220675.1| ribonucleotide-diphosphate reductase subunit beta
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|198248875|gb|ACH84468.1| Ribonucleoside-diphosphate reductase [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 374
Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats.
Identities = 201/338 (59%), Positives = 260/338 (76%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP E+ M D+ALWK GL
Sbjct: 37 ERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKGL 96
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQY+LRQAFEEA+H+H +QYI
Sbjct: 97 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQYI 156
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ S+GLDEGE+FNMY EVPS+ K + + + L+ P F TGT + DQ+ L+ L VF
Sbjct: 157 VESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLENDQKLLRSLIVFAA 216
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+ NQIK+ENP LWT
Sbjct: 217 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENPQLWT 276
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
+ FQQ+ ++ LE AYA +TMP+G +GLNAP +Y+++I NRR Q+GL +
Sbjct: 277 EAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIGNRRLVQLGLPQQYP 336
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+NPFPWMSE++DLKKEKNFFETRVTEYQ G L W+
Sbjct: 337 GVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 374
>gi|315122301|ref|YP_004062790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495703|gb|ADR52302.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 372
Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats.
Identities = 276/352 (78%), Positives = 313/352 (88%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+A+ GL PIQ G R++ D+KRM+NARSDVNQLLPLKY WAWEKYL CNNHWMPTEV
Sbjct: 21 IADTVGLGPIQKGSARIHADEKRMINARSDVNQLLPLKYKWAWEKYLFGCNNHWMPTEVS 80
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
MQ D+ALW+SKNGLT+DER MIKRNLGFFA+SESLVANNIVLAIYRH+SNPECRQYLLRQ
Sbjct: 81 MQADIALWQSKNGLTNDERHMIKRNLGFFATSESLVANNIVLAIYRHISNPECRQYLLRQ 140
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEAVH+HTFQYI+ SL L+EGELFNMYRE+PSIT KA+WAL+YT+ L+S SF+TGT D
Sbjct: 141 AFEEAVHTHTFQYIVESLSLNEGELFNMYREIPSITNKASWALRYTKNLNSTSFSTGTDD 200
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ+FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQYQYIMRDES+HLNFGID
Sbjct: 201 RDQDFLRDLIAFYVVFEGMWFYTGFAQILSLGRYNKMVGIAEQYQYIMRDESVHLNFGID 260
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIKIENPHLWT++FQQ+ R ML EA LLE+AY +TMPK F+G+NA CE+YM FI
Sbjct: 261 MINQIKIENPHLWTEDFQQEVRKMLQEAALLEVAYGKDTMPKPFLGINANLCEKYMYFIT 320
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRRC QIGL+P+F+ TENPFPWMSEVIDL+KEKNFFETRVTEYQ+G L WD
Sbjct: 321 NRRCTQIGLDPVFEKTENPFPWMSEVIDLQKEKNFFETRVTEYQKGTSLDWD 372
>gi|152980709|ref|YP_001354668.1| ribonucleotide-diphosphate reductase subunit beta
[Janthinobacterium sp. Marseille]
gi|151280786|gb|ABR89196.1| ribonucleoside-diphosphate reductase beta chain [Janthinobacterium
sp. Marseille]
Length = 392
Score = 328 bits (841), Expect = 7e-88, Method: Composition-based stats.
Identities = 210/340 (61%), Positives = 269/340 (79%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+R++ DKR++N ++DVNQL+P KY WAW+KYL+ C NHWMP E+ MQ D+ LWK+ N
Sbjct: 53 PTRRMDAADKRVINGQTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 112
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
GLTDDER ++KRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +Q
Sbjct: 113 GLTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 172
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
YI+ SLGLDEGE+FN Y EV SI K + + + +TL+ P F TGT + DQ+ L+ L VF
Sbjct: 173 YIVESLGLDEGEIFNAYNEVESIRDKDQFLIPFIETLTDPEFKTGTTENDQKLLRSLIVF 232
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++FY GFAQIL+LGR NKM+G AEQYQYI+RDES+H NFGID+IN IK+ENPHL
Sbjct: 233 ACLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHL 292
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
WT +F+++ +T+ A LE YA +TMP+G +GLNAP + Y++FIANRR QIGLEP+
Sbjct: 293 WTPQFREEIKTLFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPM 352
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
F+ ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 353 FEQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 392
>gi|261855609|ref|YP_003262892.1| ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus
c2]
gi|261836078|gb|ACX95845.1| Ribonucleoside-diphosphate reductase [Halothiobacillus neapolitanus
c2]
Length = 398
Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats.
Identities = 253/349 (72%), Positives = 287/349 (82%), Gaps = 1/349 (0%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
TGL I G RV+V KR++NA +DVNQLLP+KY WAWEKYL+ CNNHWMPTEV MQ
Sbjct: 50 QTGLEGIAQGAGRVDVSAKRIINATADVNQLLPMKYTWAWEKYLAGCNNHWMPTEVSMQA 109
Query: 64 DLALWKSKNG-LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D+ALWK ++G LT DER MI RNLGFFA++ESLVANNIVLAIY+ ++NPECRQYLLRQAF
Sbjct: 110 DIALWKGRDGGLTADERAMIMRNLGFFATAESLVANNIVLAIYKQVTNPECRQYLLRQAF 169
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
EEAVH+HTFQYI+ SLGL EGELFNMYRE+PSITAK WAL+YT+ L+ F T T
Sbjct: 170 EEAVHTHTFQYIVESLGLAEGELFNMYREIPSITAKDEWALKYTKNLADGDFDTSTTKGA 229
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
Q+FL+DL FYVVFEGMWFYTGFAQILSLGR NKM GIAEQYQYIMRDES+H+NFGIDVI
Sbjct: 230 QDFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMTGIAEQYQYIMRDESIHMNFGIDVI 289
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
NQIKIENPHLWT++F+ + ML EA LEIAYA +TMP G +GLNA C +Y+ FIANR
Sbjct: 290 NQIKIENPHLWTEDFKAEVTRMLKEAAELEIAYARDTMPHGLLGLNAEMCAEYLHFIANR 349
Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
RC+QIGL LF NPFPWMSEVIDLKKEKNFFETRVT+YQ G L W
Sbjct: 350 RCNQIGLAELFPGATNPFPWMSEVIDLKKEKNFFETRVTDYQTGGALNW 398
>gi|114332419|ref|YP_748641.1| ribonucleotide-diphosphate reductase subunit beta [Nitrosomonas
eutropha C91]
gi|114309433|gb|ABI60676.1| Ribonucleoside-diphosphate reductase [Nitrosomonas eutropha C91]
Length = 377
Score = 328 bits (840), Expect = 9e-88, Method: Composition-based stats.
Identities = 215/339 (63%), Positives = 272/339 (80%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+RV+V+DKR++N ++DVNQL+P KY WAWEKYLSAC NHWMP E+ M D+ALWK NG
Sbjct: 39 HRRVSVEDKRIINCKADVNQLVPFKYKWAWEKYLSACANHWMPQEINMTRDIALWKDPNG 98
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DER ++KRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QY
Sbjct: 99 LTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQY 158
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ S+GLDEGE+FN Y E+ SI K + + + TL++P+F TGT + DQ+ L+ L VF
Sbjct: 159 IVESIGLDEGEIFNAYHEIKSIRDKDEFLIPFIDTLTNPTFQTGTLETDQQLLKSLIVFA 218
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG++FY GF QILSLGR NKM G AEQYQYI+RDES+H NFGIDVINQIK+ENPHLW
Sbjct: 219 CIMEGLFFYVGFVQILSLGRQNKMTGAAEQYQYILRDESMHCNFGIDVINQIKLENPHLW 278
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T+EF+++ ++ +A LE YA +TMP+G +GLNAP ++Y++FI NRR HQIGL+PLF
Sbjct: 279 TREFREEISALMRKAVELEYRYAEDTMPRGVLGLNAPMFKEYLRFIINRRSHQIGLDPLF 338
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 339 PEAGNPFPWMSEMVDLKKEKNFFETRVIEYQTGGVLSWD 377
>gi|218665361|ref|YP_002427016.1| ribonucleoside-diphosphate reductase, beta subunit
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|218517574|gb|ACK78160.1| ribonucleoside-diphosphate reductase, beta subunit
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 380
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 201/338 (59%), Positives = 260/338 (76%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+RV +DKR++N +DVNQL+P KY WAW+KYL+AC NHWMP E+ M D+ALWK GL
Sbjct: 43 ERVRAEDKRIINGHADVNQLVPFKYQWAWDKYLAACANHWMPQEIQMSRDIALWKDPKGL 102
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T+DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQY+LRQAFEEA+H+H +QYI
Sbjct: 103 TEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYMLRQAFEEAIHTHAYQYI 162
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ S+GLDEGE+FNMY EVPS+ K + + + L+ P F TGT + DQ+ L+ L VF
Sbjct: 163 VESIGLDEGEIFNMYHEVPSVRDKDQFLMPFIDVLADPHFKTGTLENDQKLLRSLIVFAA 222
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG +FY GF+QIL++GR NKMVG AEQYQYI+RDES+H NFGID+ NQIK+ENP LWT
Sbjct: 223 IMEGTFFYVGFSQILAMGRQNKMVGAAEQYQYILRDESMHCNFGIDMANQIKVENPQLWT 282
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
+ FQQ+ ++ LE AYA +TMP+G +GLNAP +Y+++I NRR Q+GL +
Sbjct: 283 EAFQQEIIDLIRRGVELECAYADDTMPRGVLGLNAPVFREYVKYIGNRRLVQLGLPQQYP 342
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+NPFPWMSE++DLKKEKNFFETRVTEYQ G L W+
Sbjct: 343 GVQNPFPWMSEMMDLKKEKNFFETRVTEYQTGGALSWE 380
>gi|171463021|ref|YP_001797134.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192559|gb|ACB43520.1| Ribonucleoside-diphosphate reductase [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 394
Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats.
Identities = 205/337 (60%), Positives = 260/337 (77%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
RV DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP E+ M D+ALWK NGLT
Sbjct: 58 RVKAADKRVINAKTDVNQLVPFKYKWAWEKYLAGCANHWMPQEINMNRDIALWKDPNGLT 117
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQYLLRQAFEEA+H+H +QYI+
Sbjct: 118 EDERRIIKRNLGFFTTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 177
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
SLGLD+ E+FN Y E+ SI AK + + Y L++P+F TGT +ADQ L+ L VF V
Sbjct: 178 ESLGLDQSEIFNAYHEIDSIRAKDEFLIPYIDVLTNPNFKTGTLEADQTLLRSLIVFACV 237
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++FY GF QIL++GR NKM G AEQYQYI+RDES+H NFGID+INQIK+ENP LW
Sbjct: 238 MEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQIKLENPQLWIS 297
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
F+ + +++ +A LE YA +TMP+G +GLNAP + +++I NRRC QIGL+ +F
Sbjct: 298 AFKDEIKSIFEKAVELEYRYAEDTMPRGVLGLNAPMFKGCLRYICNRRCLQIGLDAMFPN 357
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 358 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 394
>gi|284032753|ref|YP_003382684.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836]
gi|283812046|gb|ADB33885.1| Ribonucleoside-diphosphate reductase [Kribbella flavida DSM 17836]
Length = 354
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 259/353 (73%), Positives = 287/353 (81%), Gaps = 4/353 (1%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
T PI G RV V DK M+NAR+DVNQLLPLKY WAW+KYL+ACNNHWMPTEV MQ
Sbjct: 2 TTTTPPIAVGATRVEVADKAMINARADVNQLLPLKYQWAWDKYLAACNNHWMPTEVSMQA 61
Query: 64 DLALWKS----KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
D+ALW+ K+GLT+DERLM+KRNLGFFA++ESLVANNIVLA+YR LSNPECRQYLLR
Sbjct: 62 DIALWRRPAGAKDGLTEDERLMLKRNLGFFATAESLVANNIVLAVYRQLSNPECRQYLLR 121
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
QAFEEAVH+HTFQYI TSLGLDEGELFNMYREVPSI AK WAL+YT+ L+ F TGT
Sbjct: 122 QAFEEAVHTHTFQYICTSLGLDEGELFNMYREVPSIAAKDAWALKYTRHLTDGDFRTGTP 181
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+AD +FL+DL FYVVFEGMWFYTGFAQIL LGR NKMVGIAEQYQYI+RDESLHLNFGI
Sbjct: 182 EADTDFLRDLIAFYVVFEGMWFYTGFAQILVLGRRNKMVGIAEQYQYILRDESLHLNFGI 241
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
D INQIK+ENPHLWT FQ + R ML EA LE+AY T+P G +GL A CEQYM FI
Sbjct: 242 DCINQIKLENPHLWTPAFQAEVRRMLTEACELEVAYGRATLPNGMLGLTAELCEQYMHFI 301
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+RR Q+GL PLF T NPF WMSEV+DLKKEKNFFETRV EYQ G L WD
Sbjct: 302 TDRRAEQLGLAPLFGETRNPFGWMSEVMDLKKEKNFFETRVIEYQSGGGLSWD 354
>gi|257055668|ref|YP_003133500.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
DSM 43017]
gi|256585540|gb|ACU96673.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
DSM 43017]
Length = 349
Score = 325 bits (832), Expect = 7e-87, Method: Composition-based stats.
Identities = 261/343 (76%), Positives = 299/343 (87%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
+ G RVNVDDK M+NAR+DVNQLLP+KYGWAWEKYL+ C+NHWMPTEV MQ D+ALWK
Sbjct: 7 LDFGAARVNVDDKAMINARADVNQLLPMKYGWAWEKYLAGCDNHWMPTEVSMQADIALWK 66
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
S +GLTDDERLM+KRNLGFFA++ESLVANN+VLA+YRHL+NPECRQYLLRQAFEEAVH+H
Sbjct: 67 SPDGLTDDERLMLKRNLGFFATAESLVANNLVLAVYRHLTNPECRQYLLRQAFEEAVHTH 126
Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
TFQYI SLGLDEGELFN YREVPSI K +WAL+YT+ L P+FTTGT +ADQEFL+DL
Sbjct: 127 TFQYICVSLGLDEGELFNAYREVPSIANKDSWALRYTRNLEDPNFTTGTMEADQEFLRDL 186
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
FYVVFEGMWFYTGFAQ+LSLGR NKMVGIAEQYQYI+RDES+HLNFG+D INQIK EN
Sbjct: 187 VAFYVVFEGMWFYTGFAQVLSLGRRNKMVGIAEQYQYILRDESIHLNFGVDCINQIKAEN 246
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
PHLWT EFQQ+ R ML EA LE+AYAH+TMP+ +GL+A CEQYM FI +RR Q+GL
Sbjct: 247 PHLWTPEFQQQVRDMLVEACELEVAYAHDTMPRPMLGLSAELCEQYMHFITDRRAAQLGL 306
Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+P+F ENPFPWMSEVIDL+KEKNFFETRVT+Y+ GA L WD
Sbjct: 307 DPVFGERENPFPWMSEVIDLRKEKNFFETRVTDYRSGAALAWD 349
>gi|302877617|ref|YP_003846181.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans
ES-2]
gi|302580406|gb|ADL54417.1| Ribonucleoside-diphosphate reductase [Gallionella capsiferriformans
ES-2]
Length = 365
Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats.
Identities = 215/337 (63%), Positives = 271/337 (80%), Gaps = 1/337 (0%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
R+ V+DKR++N ++DVNQL+P KY WAWEKYL+AC NHWMP EV M D+ALWKS + L+
Sbjct: 30 RIRVEDKRIINCKADVNQLVPFKYKWAWEKYLAACANHWMPQEVNMTADIALWKS-DKLS 88
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
DDER +IKRNLGFF +++SL ANNIVL YRH++NPECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 89 DDERRLIKRNLGFFTTADSLAANNIVLGSYRHITNPECRQFLLRQAFEEAIHTHAYQYIV 148
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
SLGLDEGE+FNMY EVPSI K + L Y L++P F TGT +ADQ L+ L VF +
Sbjct: 149 ESLGLDEGEIFNMYHEVPSIRNKDEFLLPYIDVLTNPEFKTGTPEADQALLRSLIVFACI 208
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+HLNFG+D+INQIK+ENPHLWT
Sbjct: 209 MEGLFFYVGFVQILALGRQNKMTGAAEQYQYILRDESMHLNFGVDLINQIKMENPHLWTA 268
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
F+++ R ++ + LE AYA +TMP+G +GLNA ++Y++FIANRRC QIG++ L++
Sbjct: 269 AFREEIRGLMQKGVELEYAYAEDTMPRGILGLNATMFKEYLRFIANRRCQQIGVDILYQG 328
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NPFPWMSE+IDLKKEKNFFE+RVTEYQ G L WD
Sbjct: 329 ATNPFPWMSEMIDLKKEKNFFESRVTEYQTGGTLSWD 365
>gi|264680215|ref|YP_003280125.1| ribonucleotide reductase [Comamonas testosteroni CNB-2]
gi|262210731|gb|ACY34829.1| ribonucleotide reductase [Comamonas testosteroni CNB-2]
Length = 336
Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats.
Identities = 206/336 (61%), Positives = 259/336 (77%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+N DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NGLT+
Sbjct: 1 MNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNGLTE 60
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
DER ++KRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H +QYI+
Sbjct: 61 DERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIVE 120
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
SLGLDE E+FN Y EV SI K + + + + + P+F TGT + DQ L+ L VF +
Sbjct: 121 SLGLDESEIFNAYNEVQSIRDKDEFLIPFIEAIMDPNFHTGTPETDQTLLKSLIVFACLM 180
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++FY GF QIL+LGR NKM G AEQYQYI+RDES+H NFGID+INQ+K+ENPHLWT E
Sbjct: 181 EGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPHLWTAE 240
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
F+Q+ + +A LE YA +TMP+G +G+NA + Y+++IANRR QIGLE LF
Sbjct: 241 FKQEITELFQKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEELFPGE 300
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPFPWMSE+IDLKKE+NFFETRV EYQ G L WD
Sbjct: 301 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD 336
>gi|294339031|emb|CAZ87378.1| putative Ribonucleoside-diphosphate reductase (ribonucleoside
diphosphate reductase, beta subunit) [Thiomonas sp. 3As]
Length = 410
Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats.
Identities = 207/343 (60%), Positives = 263/343 (76%), Gaps = 4/343 (1%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
RV +DKR++N DVNQL+P KY WAW+KYL++C NHWMP EV M D+A+WK NG
Sbjct: 68 TARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEVNMSRDIAMWKDPNG 127
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LTDDERL+IKRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QY
Sbjct: 128 LTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQY 187
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT----GTKDADQEFLQDL 189
I+ S+GLDE E+FN Y E+ SI K + + + TL++P F T G++ DQE L+ +
Sbjct: 188 IVESIGLDESEIFNSYHEITSIREKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELLRSI 247
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
VF + EG++FY GF QILS+GR NKM G AEQYQYI+RDES+H NFGID++NQIK+EN
Sbjct: 248 IVFACLMEGLFFYVGFTQILSMGRQNKMTGAAEQYQYILRDESMHTNFGIDLVNQIKLEN 307
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
PHLWT EF+++ + H+A LE YA +TMP+G +GLNA + Y++FIANRR QIGL
Sbjct: 308 PHLWTPEFKRELTGLFHQAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAVQIGL 367
Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+ +F ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 368 DAIFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWE 410
>gi|296135014|ref|YP_003642256.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12]
gi|295795136|gb|ADG29926.1| Ribonucleoside-diphosphate reductase [Thiomonas intermedia K12]
Length = 402
Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats.
Identities = 206/343 (60%), Positives = 263/343 (76%), Gaps = 4/343 (1%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
RV +DKR++N DVNQL+P KY WAW+KYL++C NHWMP E+ M D+A+WK NG
Sbjct: 60 TARVRAEDKRIINCSVDVNQLVPFKYKWAWDKYLASCANHWMPQEINMSRDIAMWKDPNG 119
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LTDDERL+IKRNLGFF +++SL ANNIVL YRH++NPECRQYLLRQAFEEA+H+H +QY
Sbjct: 120 LTDDERLIIKRNLGFFTTADSLAANNIVLGTYRHITNPECRQYLLRQAFEEAIHTHAYQY 179
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT----GTKDADQEFLQDL 189
I+ S+GLDE E+FN Y E+ SI K + + + TL++P F T G++ DQE L+ +
Sbjct: 180 IVESIGLDESEIFNSYHEIASIRDKDEFLIPFIDTLTNPEFRTSAFGGSERNDQELLRSI 239
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
VF + EG++FY GF QILS+GR NKM G AEQYQYI+RDES+H NFGID++NQIK+EN
Sbjct: 240 IVFACLMEGLFFYVGFTQILSMGRQNKMTGAAEQYQYILRDESMHTNFGIDLVNQIKLEN 299
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
PHLWT EF+++ + H+A LE YA +TMP+G +GLNA + Y++FIANRR QIGL
Sbjct: 300 PHLWTPEFKRELTGLFHQAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAVQIGL 359
Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+ +F ENPFPWMSE+IDLKKE+NFFETRV EYQ G L W+
Sbjct: 360 DAIFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWE 402
>gi|268316001|ref|YP_003289720.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM
4252]
gi|262333535|gb|ACY47332.1| Ribonucleoside-diphosphate reductase [Rhodothermus marinus DSM
4252]
Length = 347
Score = 309 bits (791), Expect = 4e-82, Method: Composition-based stats.
Identities = 207/341 (60%), Positives = 271/341 (79%), Gaps = 3/341 (0%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
G +R+ V+DKR++N DVNQL+P+KY WAWE YL+ C NHWMP+E+PM D+ LW+S
Sbjct: 8 GSRRIRVEDKRLINCHEVDVNQLMPIKYAWAWEHYLNGCKNHWMPSEIPMARDIELWRS- 66
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
+ LTDDERL+I RNLGFFA++ESLV NNIVLAI+RH++NPECRQYLLRQAFEEA+H+H F
Sbjct: 67 DKLTDDERLVILRNLGFFATAESLVGNNIVLAIFRHVTNPECRQYLLRQAFEEAIHTHAF 126
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
YI+ SLGLDEGE+FNMYRE+P++ K + ++ T+ + P FTT T + Q FL++L
Sbjct: 127 LYIVESLGLDEGEVFNMYREIPAVARKDEFEMELTREVLRPDFTTATVEGAQAFLKNLIG 186
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
+YV+ EG++FY+GFA ILS R NKM GI EQ+QYI+RDE++HLNFGID+IN IK ENP
Sbjct: 187 YYVIMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIKAENPE 246
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
LWT EFQ++ + ++ EA LE+AYA++ +P+G +GL AP +Y+Q+IA+RR +IGL+
Sbjct: 247 LWTPEFQREVQQLIEEAVELEVAYAYDCLPRGVLGLTAPMFREYVQYIADRRLERIGLKA 306
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+ ++NPFPWMSE IDL KEKNFFETRVTEYQQ A L WD
Sbjct: 307 RYG-SKNPFPWMSETIDLLKEKNFFETRVTEYQQAAALSWD 346
>gi|325110864|ref|YP_004271932.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305]
gi|324971132|gb|ADY61910.1| ribonucleotide reductase [Planctomyces brasiliensis DSM 5305]
Length = 353
Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats.
Identities = 198/344 (57%), Positives = 256/344 (74%), Gaps = 3/344 (0%)
Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ A R +KR++N + DVNQL+P+KY WAWE YL+ C NHWMPTEVPM D+ +W
Sbjct: 12 LDAPTGRFKASEKRLINCAQVDVNQLMPIKYAWAWEHYLNGCANHWMPTEVPMTKDIEVW 71
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS N L+DDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLLRQAFEEAVH+
Sbjct: 72 KS-NKLSDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLLRQAFEEAVHT 130
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
HTF Y++ SLGL EGE+FNMY EVP+I K + ++ T + S FTT T + Q FL++
Sbjct: 131 HTFLYVVDSLGLHEGEVFNMYHEVPAIARKDEFEMKLTAEVLSEDFTTETYEGRQTFLRN 190
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L +Y++ EG++FYTGF ILS R N + GI EQ+QYI+RDE+ HLNFGID+IN IK E
Sbjct: 191 LIGYYLIMEGIFFYTGFVMILSFHRRNLLTGIGEQFQYILRDETTHLNFGIDLINGIKHE 250
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP +WT++FQQ+ ++ EA LEI YA + +P+G +GLN Y+Q IA+RR +IG
Sbjct: 251 NPDIWTEKFQQEIIDLVKEAVELEIDYARDCLPRGVLGLNGNLFRDYVQHIADRRLERIG 310
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L L+ + NPFPWMSE +DL KEKNFFETRVTEYQ G L WD
Sbjct: 311 LPTLYN-SSNPFPWMSETMDLAKEKNFFETRVTEYQTGGTLSWD 353
>gi|283779060|ref|YP_003369815.1| ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068]
gi|283437513|gb|ADB15955.1| Ribonucleoside-diphosphate reductase [Pirellula staleyi DSM 6068]
Length = 357
Score = 303 bits (775), Expect = 3e-80, Method: Composition-based stats.
Identities = 193/335 (57%), Positives = 257/335 (76%), Gaps = 3/335 (0%)
Query: 19 VDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
++KR++N + DVNQL+P+KY WAWE Y + C NHWMP+EVPM D+ W++ + LTDD
Sbjct: 25 AEEKRLINCSTVDVNQLMPIKYHWAWEHYQNGCANHWMPSEVPMGKDIETWRTGS-LTDD 83
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+L+I RNLGFF+++ESLV NN+VLAI+RH++NPECRQYLLRQAFEEA+H+HTF YI+ S
Sbjct: 84 EKLVILRNLGFFSTAESLVGNNLVLAIFRHVTNPECRQYLLRQAFEEAIHTHTFLYIVES 143
Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
LGLD+ E+FNMYRE+PSI K + +Q T L P+FTT T + Q+FL++L +Y++ E
Sbjct: 144 LGLDDREVFNMYREIPSIARKDAFEMQLTTGLLDPNFTTETAEGAQKFLENLIGYYLIME 203
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++FYTGF ILS R N+M GI EQ+QYI+RDE++HLNFGID+IN ++ ENP +WT +F
Sbjct: 204 GIFFYTGFVMILSFHRQNRMTGIGEQFQYILRDETIHLNFGIDLINGVRAENPGIWTADF 263
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
Q++ ++ EA LE+AYA + +P+G VGLN Y+Q IA+RR +IGL + +
Sbjct: 264 QERVIKLVREAVELEVAYAWDCLPRGIVGLNGELFRDYVQHIADRRLERIGLPTQYG-SA 322
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NPFPWMSE +DL KEKNFFETRVTEYQ A L WD
Sbjct: 323 NPFPWMSETMDLGKEKNFFETRVTEYQSAASLAWD 357
>gi|166154172|ref|YP_001654290.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis 434/Bu]
gi|166155047|ref|YP_001653302.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|301335416|ref|ZP_07223660.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis L2tet1]
gi|165930160|emb|CAP03644.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis 434/Bu]
gi|165931035|emb|CAP06598.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis L2b/UCH-1/proctitis]
Length = 346
Score = 302 bits (772), Expect = 7e-80, Method: Composition-based stats.
Identities = 194/343 (56%), Positives = 259/343 (75%), Gaps = 3/343 (0%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW
Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F T + + QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L +Y++ EG++FY+GF ILS R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP +WT E QQ+ ++ A LEI YA + +P+G +GL A Y+Q IA+RR +IG
Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
L+P++ +T+NPFPWMSE IDL KEKNFFETRVTEYQ A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346
>gi|76789573|ref|YP_328659.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis A/HAR-13]
gi|237803260|ref|YP_002888454.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis B/Jali20/OT]
gi|237805181|ref|YP_002889335.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis B/TZ1A828/OT]
gi|255349232|ref|ZP_05381239.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis 70]
gi|255503769|ref|ZP_05382159.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis 70s]
gi|255507450|ref|ZP_05383089.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis D(s)2923]
gi|76168103|gb|AAX51111.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis A/HAR-13]
gi|231273481|emb|CAX10397.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis B/TZ1A828/OT]
gi|231274494|emb|CAX11290.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis B/Jali20/OT]
gi|289525874|emb|CBJ15356.1| ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis Sweden2]
gi|296435459|gb|ADH17637.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis E/150]
gi|296439176|gb|ADH21329.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis E/11023]
Length = 346
Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 193/343 (56%), Positives = 258/343 (75%), Gaps = 3/343 (0%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW
Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F T + + QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L +Y++ EG++FY+GF ILS R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP +WT E QQ+ ++ A LEI YA + +P+G +GL A Y+Q IA+RR +IG
Sbjct: 245 NPGIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346
>gi|329943118|ref|ZP_08291892.1| ribonucleotide reductase, small chain family protein [Chlamydophila
psittaci Cal10]
gi|332287701|ref|YP_004422602.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC]
gi|325507260|gb|ADZ18898.1| ribonucleotide reductase subunit beta [Chlamydophila psittaci 6BC]
gi|328814665|gb|EGF84655.1| ribonucleotide reductase, small chain family protein [Chlamydophila
psittaci Cal10]
gi|328914953|gb|AEB55786.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
psittaci 6BC]
Length = 346
Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats.
Identities = 189/343 (55%), Positives = 255/343 (74%), Gaps = 3/343 (0%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
++ KRV ++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW
Sbjct: 6 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66 KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F+T + + +F+++
Sbjct: 125 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 184
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 244
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP +WT E Q + ++ +A LEI YA + +P+G +GL A Y++ IA+RR +IG
Sbjct: 245 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 304
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ A L W
Sbjct: 305 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 346
>gi|15605563|ref|NP_220349.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis D/UW-3/CX]
gi|255311668|ref|ZP_05354238.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis 6276]
gi|255317969|ref|ZP_05359215.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis 6276s]
gi|14195107|sp|O84835|RIR2_CHLTR RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|51247460|pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide
Reductase From Chlamydia Trachomatis
gi|3329298|gb|AAC68425.1| Ribonucleoside Reductase, Small Chain [Chlamydia trachomatis
D/UW-3/CX]
gi|296436383|gb|ADH18557.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis G/9768]
gi|296437314|gb|ADH19484.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis G/11222]
gi|296438242|gb|ADH20403.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis G/11074]
gi|297140743|gb|ADH97501.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
trachomatis G/9301]
gi|297748957|gb|ADI51503.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis D-EC]
gi|297749837|gb|ADI52515.1| Ribonucleoside-diphosphate reductase beta chain [Chlamydia
trachomatis D-LC]
Length = 346
Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 193/343 (56%), Positives = 258/343 (75%), Gaps = 3/343 (0%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW
Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F T + + QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L +Y++ EG++FY+GF ILS R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP +WT E QQ+ ++ A LEI YA + +P+G +GL A Y+Q IA+RR +IG
Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346
>gi|112489977|pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide
Reductase R2 From Chlamydia Trachomatis
Length = 346
Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 192/343 (55%), Positives = 258/343 (75%), Gaps = 3/343 (0%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW
Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 65
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
HT+ YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F T + + QEF+++
Sbjct: 125 HTYLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 184
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L +Y++ EG++FY+GF ILS R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 244
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP +WT E QQ+ ++ A LEI YA + +P+G +GL A Y+Q IA+RR +IG
Sbjct: 245 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 304
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
L+P++ +T+NPFPWMSE IDL KEKNFFETRV EYQ A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346
>gi|62185356|ref|YP_220141.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
abortus S26/3]
gi|62148423|emb|CAH64191.1| putative ibonucleoside reductase small subunit [Chlamydophila
abortus S26/3]
Length = 349
Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 188/343 (54%), Positives = 254/343 (74%), Gaps = 3/343 (0%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
++ KRV ++ KR++N DVNQL+P+KY WAWE Y++ C N W+PTEVPM D+ LW
Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYVNGCANTWLPTEVPMARDIELW 68
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 69 KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F+T + + +F+++
Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 187
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP +WT E Q + ++ +A LEI YA + +P+G +GL A Y++ IA+RR +IG
Sbjct: 248 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 307
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ A L W
Sbjct: 308 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 349
>gi|313848275|emb|CBY17276.1| putative ibonucleoside reductase small subunit [Chlamydophila
psittaci RD1]
Length = 349
Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats.
Identities = 189/343 (55%), Positives = 255/343 (74%), Gaps = 3/343 (0%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
++ KRV ++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW
Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 68
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 69 KS-NNLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 127
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
HTF YI SLGLDE E+FN Y E +I AK ++ + T + P+F+T + + +F+++
Sbjct: 128 HTFLYICESLGLDEAEVFNAYNERATIRAKDDFQMTLTGDVLDPNFSTNSLEGLSQFIKN 187
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP +WT E Q + ++ +A LEI YA + +P+G +GL A Y++ IA+RR +IG
Sbjct: 248 NPEVWTPELQSEIIALIEKAVDLEIEYARDCLPRGILGLKASMFIDYVRHIADRRLERIG 307
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
L+P++ +++NPFPWMSE IDL KEKNFFETRV EYQ A L W
Sbjct: 308 LKPIY-HSKNPFPWMSETIDLNKEKNFFETRVIEYQTAANLSW 349
>gi|29840533|ref|NP_829639.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
caviae GPIC]
gi|29834882|gb|AAP05517.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
caviae GPIC]
Length = 346
Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats.
Identities = 188/341 (55%), Positives = 257/341 (75%), Gaps = 3/341 (0%)
Query: 12 AGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
KRV ++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LWKS
Sbjct: 8 GKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELWKS 67
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
+ L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+HT
Sbjct: 68 ND-LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTHT 126
Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
F YI SLGLDEGE+FN Y E +I AK ++ + T + +P+F+T + + ++F+++L
Sbjct: 127 FLYICESLGLDEGEVFNAYNERATIKAKDDFQMTLTVDVLNPNFSTDSVEGLRQFIKNLV 186
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
+Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP
Sbjct: 187 GYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENP 246
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
+W++E Q + ++ +A LEI YA + +P+G +GL + Y++ IA+RR +IGL+
Sbjct: 247 EVWSQELQDEIIALIQKAVDLEIEYAKDCLPRGILGLKSSMFIDYVRHIADRRLERIGLK 306
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
P++ Y++NPFPWMSE IDL KEKNFFETRVTEYQ L W
Sbjct: 307 PIY-YSKNPFPWMSETIDLNKEKNFFETRVTEYQTSGNLSW 346
>gi|15834835|ref|NP_296594.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
muridarum Nigg]
gi|270285001|ref|ZP_06194395.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
muridarum Nigg]
gi|270289024|ref|ZP_06195326.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
muridarum Weiss]
gi|301336399|ref|ZP_07224601.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydia
muridarum MopnTet14]
gi|14195147|sp|Q9PL92|RIR2_CHLMU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|7190253|gb|AAF39087.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydia
muridarum Nigg]
Length = 346
Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats.
Identities = 196/343 (57%), Positives = 258/343 (75%), Gaps = 3/343 (0%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ +KRVN++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+ M D+ LW
Sbjct: 6 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMGKDIELW 65
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66 KS-NVLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 124
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
HTF YI SLGLDE E+FN Y E SI AK ++ ++ T + P+F T + + QEF+++
Sbjct: 125 HTFLYICESLGLDEKEIFNAYNERASIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFIKN 184
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L +Y++ EG++FY+GF ILS R NKMVGI EQYQYI+RDE++HLNFG+D+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMVGIGEQYQYILRDETIHLNFGVDLINGIKEE 244
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP +WT E QQ+ M+ A LEI YA + +P+G +GL A Y+Q IA+RR +IG
Sbjct: 245 NPEIWTTELQQEIIEMIQRAVDLEIDYARDCLPRGILGLRASMFIDYVQHIADRRLERIG 304
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
L+P++ +T+NPFPWMSE IDL KEKNFFETRVTEYQ A L W
Sbjct: 305 LKPIY-HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346
>gi|89898045|ref|YP_515155.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
felis Fe/C-56]
gi|89331417|dbj|BAE81010.1| ribonucleoside-diphosphate reductase beta chain [Chlamydophila
felis Fe/C-56]
Length = 349
Score = 299 bits (764), Expect = 6e-79, Method: Composition-based stats.
Identities = 188/343 (54%), Positives = 258/343 (75%), Gaps = 3/343 (0%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
++ KRV ++ KR++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW
Sbjct: 9 LEGKSKRVQLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIDLW 68
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS N L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 69 KS-NELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEVRQYLLRQAFEEAVHT 127
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
HTF YI SLGLDE E+FN Y E +I AK ++ + T+ + P+F+T T + ++F+++
Sbjct: 128 HTFLYICESLGLDESEVFNAYNERATIKAKDDFQMDLTRDVLDPNFSTHTIENLRQFIKN 187
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 188 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 247
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP +W+++ Q + ++ +A LEI YA + +P+G +GL + Y++ IA+RR +IG
Sbjct: 248 NPEVWSQQLQDEIVDLIQKAVDLEIEYARDCLPRGILGLRSSMFIDYVRHIADRRLERIG 307
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
L+P++ ++NPFPWMSE IDL KEKNFFETRVTEYQ A L W
Sbjct: 308 LKPIYN-SKNPFPWMSETIDLNKEKNFFETRVTEYQTAANLNW 349
>gi|33242353|ref|NP_877294.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
pneumoniae TW-183]
gi|33236864|gb|AAP98951.1| ribonucleoside reductase small chain [Chlamydophila pneumoniae
TW-183]
Length = 365
Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats.
Identities = 187/343 (54%), Positives = 252/343 (73%), Gaps = 3/343 (0%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ KRV V K ++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW
Sbjct: 25 LDGKLKRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 84
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 85 KS-DELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 143
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
HTF YI SLGLDEGE+FN Y E SI AK ++ + T + P+F+ + + +F+++
Sbjct: 144 HTFLYICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKN 203
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 204 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 263
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP +WT E Q++ ++ +A LEI YA + +P+G +GL + Y++ IA+RR +IG
Sbjct: 264 NPEVWTTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIG 323
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
L+P++ ++ NPFPWMSE +DL KEKNFFETRVTEYQ L W
Sbjct: 324 LKPIY-HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 365
>gi|269839640|ref|YP_003324332.1| ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC
BAA-798]
gi|269791370|gb|ACZ43510.1| Ribonucleoside-diphosphate reductase [Thermobaculum terrenum ATCC
BAA-798]
Length = 353
Score = 297 bits (759), Expect = 2e-78, Method: Composition-based stats.
Identities = 198/344 (57%), Positives = 254/344 (73%), Gaps = 3/344 (0%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ +R+ V+DKR++N ++ DVNQL PLKY WAWE YL+ C NHWMPTEVPM D+ LW
Sbjct: 12 MYDLSQRIRVEDKRLINCKAVDVNQLWPLKYAWAWEHYLNGCANHWMPTEVPMHKDIELW 71
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+S N LT DERL+I RNLGFF++ ESLV NNIVLAI++H++NPE RQYLLRQAFEEA+H+
Sbjct: 72 RS-NALTPDERLVIMRNLGFFSTGESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAIHT 130
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
H F YI+ SLGLD E+FNMYREV SI K + + T+ + P FTT T + Q+F+++
Sbjct: 131 HAFHYIVESLGLDGREVFNMYREVDSIKGKDEFVMSLTERVLDPDFTTETLEGIQDFIRN 190
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L FYV+ EG++FY+GF ILS R N+M GI EQ+QYI+RDE++HLNFGID+IN IK E
Sbjct: 191 LVGFYVIMEGIFFYSGFVMILSFHRQNRMTGIGEQFQYILRDETVHLNFGIDLINTIKEE 250
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP WT+E ++ M+ +A EIAYA E +P G +GLNA +Y+Q+IA+RR +I
Sbjct: 251 NPEAWTEELRRDLVGMIRQAVEYEIAYARECLPNGVLGLNADLFREYVQYIADRRLERIE 310
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
L + + NPFPWMSE +DL KEKNFFETRVTEYQ L WD
Sbjct: 311 LPVQY-RSRNPFPWMSETMDLPKEKNFFETRVTEYQNAGTLVWD 353
>gi|330443801|ref|YP_004376787.1| ribonucleoside-diphosphate reductase subunit beta [Chlamydophila
pecorum E58]
gi|328806911|gb|AEB41084.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
pecorum E58]
Length = 346
Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats.
Identities = 187/338 (55%), Positives = 255/338 (75%), Gaps = 3/338 (0%)
Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
KRV++++KR++N DVNQL+P+KY WAWE YL+ C N+W+PTE+ M D+ LWKS NG
Sbjct: 11 KRVHINNKRLVNCSQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMARDIELWKS-NG 69
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+ TF Y
Sbjct: 70 LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHTQTFLY 129
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I SL LDE E+FN Y E SI AK ++ + T + P+F+T + + ++F+++L +Y
Sbjct: 130 ICESLSLDEAEVFNAYNERESIKAKDDFQMTLTVDVLDPNFSTDSIEGLRKFIKNLVGYY 189
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK ENP +W
Sbjct: 190 LIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEENPEVW 249
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+KE Q++ ++ A LEI YA + +PKG +GL + Y++ IA+RR +IGL+P++
Sbjct: 250 SKELQEEIIALIETAVGLEIDYAKDCLPKGILGLKSSMFIDYVRHIADRRLERIGLKPIY 309
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
++NPFPWMSE +DL KEKNFFETRVTEYQ A L W
Sbjct: 310 N-SKNPFPWMSETMDLNKEKNFFETRVTEYQTAASLSW 346
>gi|149173739|ref|ZP_01852368.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces
maris DSM 8797]
gi|148847269|gb|EDL61603.1| ribonucleotide-diphosphate reductase beta subunit [Planctomyces
maris DSM 8797]
Length = 359
Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats.
Identities = 198/356 (55%), Positives = 248/356 (69%), Gaps = 7/356 (1%)
Query: 2 ANNTGLSPIQ----AGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMP 56
AN +P+ R D KR++N DVNQL+PLKY WAWE YL+ C NHWMP
Sbjct: 6 ANTNSKTPVSPVGDTPTGRFKADKKRLINCSQVDVNQLMPLKYHWAWEHYLNGCANHWMP 65
Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
TEV M D+ W+S + L++ ER +I RNLGFFA++ESLVANNIVLAI++H++N ECRQY
Sbjct: 66 TEVGMTKDIETWRS-SKLSEGERFVIMRNLGFFATAESLVANNIVLAIFKHVTNAECRQY 124
Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
LLRQAFEEAVHSHTF YI+ SLGL+E E+FNMY EVP+I K ++ T + FTT
Sbjct: 125 LLRQAFEEAVHSHTFLYIVESLGLNESEVFNMYHEVPAIAKKDQLEMELTSEILDHDFTT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
T + Q FL++L +Y++ EG++FYTGF +LS R N M GI EQ+QYI+RDE++HLN
Sbjct: 185 DTFEGAQAFLKNLIGYYLIMEGLFFYTGFVMVLSFHRRNMMTGIGEQFQYILRDETIHLN 244
Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
FGID+IN IK ENP LWT EFQQ + A LEI YA + +P G +GLN +Y+
Sbjct: 245 FGIDLINGIKQENPDLWTPEFQQLIIDRMKYAAELEIEYAKDCLPTGILGLNGELFREYV 304
Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
Q IA+RR +IGL + + NPFPWMSE +DL KEKNFFETRVTEYQ L WD
Sbjct: 305 QHIADRRLERIGLPAQYG-SANPFPWMSETMDLSKEKNFFETRVTEYQSSGSLNWD 359
>gi|15618893|ref|NP_225179.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
pneumoniae CWL029]
gi|15836516|ref|NP_301040.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
pneumoniae J138]
gi|16752043|ref|NP_445409.1| ribonucleotide-diphosphate reductase subunit beta [Chlamydophila
pneumoniae AR39]
gi|14195165|sp|Q9Z6S4|RIR2_CHLPN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|4377313|gb|AAD19122.1| Ribonucleoside Reductase, Small Chain [Chlamydophila pneumoniae
CWL029]
gi|7189783|gb|AAF38660.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
pneumoniae AR39]
gi|8979358|dbj|BAA99192.1| ribonucleoside reductase, small chain [Chlamydophila pneumoniae
J138]
gi|269302786|gb|ACZ32886.1| ribonucleoside-diphosphate reductase, beta subunit [Chlamydophila
pneumoniae LPCoLN]
Length = 346
Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats.
Identities = 187/343 (54%), Positives = 252/343 (73%), Gaps = 3/343 (0%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ KRV V K ++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW
Sbjct: 6 LDGKLKRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66 KS-DELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
HTF YI SLGLDEGE+FN Y E SI AK ++ + T + P+F+ + + +F+++
Sbjct: 125 HTFLYICESLGLDEGEVFNAYNERASIRAKDDFQMTLTVDVLDPNFSVQSSEGLGQFIKN 184
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L +Y++ EG++FY+GF ILS R NKM GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 185 LVGYYIIMEGIFFYSGFVMILSFHRQNKMTGIGEQYQYILRDETIHLNFGIDLINGIKEE 244
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP +WT E Q++ ++ +A LEI YA + +P+G +GL + Y++ IA+RR +IG
Sbjct: 245 NPEVWTTELQEEIVALIEKAVELEIEYAKDCLPRGILGLRSSMFIDYVRHIADRRLERIG 304
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
L+P++ ++ NPFPWMSE +DL KEKNFFETRVTEYQ L W
Sbjct: 305 LKPIY-HSRNPFPWMSETMDLNKEKNFFETRVTEYQTAGNLSW 346
>gi|298243909|ref|ZP_06967716.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM
44963]
gi|297556963|gb|EFH90827.1| Ribonucleoside-diphosphate reductase [Ktedonobacter racemifer DSM
44963]
Length = 361
Score = 292 bits (746), Expect = 7e-77, Method: Composition-based stats.
Identities = 194/341 (56%), Positives = 251/341 (73%), Gaps = 3/341 (0%)
Query: 13 GEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
KR++N DVNQL+PLKY WAWE YL+ C NHWMPTEVPM D+ W+S
Sbjct: 23 PASEQQAQKKRLINGWHVDVNQLMPLKYRWAWEHYLNGCANHWMPTEVPMTKDIETWRS- 81
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
N LT ERL+I RNLGFFA++ESLV NN+VLAI++H++N ECRQYLLRQAFEEA+H+HTF
Sbjct: 82 NKLTAGERLVIMRNLGFFATAESLVGNNLVLAIFKHITNAECRQYLLRQAFEEAIHTHTF 141
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
YI+ SLGL E E+FNMY E+PSI K + +Q T + P F+T T + Q+FLQ+L
Sbjct: 142 LYIVESLGLSEHEVFNMYHEIPSIKEKDEFEMQLTSAVLDPDFSTETFEGMQKFLQNLIG 201
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
+Y++ EG++FY+GF +LS R N M G+ EQ+QYI+RDE++HLNFGID+IN IK ENP
Sbjct: 202 YYIIMEGIFFYSGFVMMLSFHRRNLMTGVGEQFQYILRDETIHLNFGIDLINGIKAENPE 261
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
LWT EFQ ++ A LEIAYA++ +P G +GLNA S Y+Q +A+RR +IGL P
Sbjct: 262 LWTTEFQAHIYDLIKRAVELEIAYAYDCLPNGILGLNAESFRSYVQHVADRRLERIGLAP 321
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+F ++ +PFPWMSE +DL KEKNFFETRVTEYQ + L+W+
Sbjct: 322 IF-HSSHPFPWMSETMDLSKEKNFFETRVTEYQAASTLEWE 361
>gi|159465291|ref|XP_001690856.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas
reinhardtii]
gi|158279542|gb|EDP05302.1| ribonucleoside-diphosphate reductase small subunit [Chlamydomonas
reinhardtii]
Length = 493
Score = 292 bits (746), Expect = 8e-77, Method: Composition-based stats.
Identities = 95/345 (27%), Positives = 151/345 (43%), Gaps = 29/345 (8%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
P R + D+ +L + L P+KY WE Y + W EV DL
Sbjct: 153 EPSAEVASRSTLLDEDLLRENPNRFTLFPIKYPDLWEFYKQGVASFWTVEEVDFTGDLID 212
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
W L +E+ IK L FFA+S+ +V N+ + PE R + Q E VH
Sbjct: 213 WH---RLKPEEQRFIKYVLAFFAASDGIVMENLAARFMSDIQVPEARAFYGFQIAMENVH 269
Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
S + ++ + E LF+ +P++ KA WA+++ +
Sbjct: 270 SEMYSVLLDHYVREPEERNQLFDAIHTIPTVAKKAEWAMRWISS-------------SNV 316
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
F + L + EG+ F F I L + M G++ I RDE LH +F + +
Sbjct: 317 FAERLVG-FACVEGIHFSGSFCSIFWLKKRCLMPGLSFSNVLISRDEGLHCDFACCLYSH 375
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+K +++ ++ EA LE + E + +G+NA QY++F+A+R
Sbjct: 376 LKNRLS-------RERVLQIVDEAVQLEDEFCTEALSCELLGMNADLMRQYIRFVADRLL 428
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+G E + T NPF WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 429 VSLGYEKHYN-TRNPFDWM-EMISLQGKANFFERRVGEYQRAGVM 471
>gi|159899093|ref|YP_001545340.1| ribonucleotide-diphosphate reductase subunit beta [Herpetosiphon
aurantiacus ATCC 23779]
gi|159892132|gb|ABX05212.1| Ribonucleoside-diphosphate reductase [Herpetosiphon aurantiacus
ATCC 23779]
Length = 342
Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats.
Identities = 192/339 (56%), Positives = 253/339 (74%), Gaps = 3/339 (0%)
Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
R N DKR++N DVNQL+PL+YGWAWE YL+ C NHWMP EV M D+A+W+S +
Sbjct: 6 GRFNASDKRLINCNQVDVNQLMPLRYGWAWEHYLNGCANHWMPNEVSMTGDIAIWRSTS- 64
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L+ DERLM+ RNLGFFA++ESLV NNIVLAI+RH++N ECRQYLLRQAFEEA+H+H F +
Sbjct: 65 LSADERLMVLRNLGFFATAESLVGNNIVLAIFRHITNAECRQYLLRQAFEEAIHTHAFLH 124
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ SLGL+E E+FNMY E+P I+ K + +Q T + P F+T T Q F+++L +Y
Sbjct: 125 IVESLGLNEREIFNMYHEIPVISQKDQFEMQLTAAVLDPQFSTETLTGMQTFVKNLIGYY 184
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
V+ EG++FY+GFA +LSL R N + GI EQ QYI+RDE++HLNFG+D+IN IK ENP +W
Sbjct: 185 VIMEGIFFYSGFAMLLSLHRRNVLTGIGEQIQYILRDETIHLNFGVDLINGIKAENPAIW 244
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
T EFQ + ++ ++ LE YA E +P+G +GL+A Y+Q+IA+RR +IGL +
Sbjct: 245 TNEFQAEIVQLIRQSVELEAQYAAECLPRGVMGLHAAMFRDYVQYIADRRLQRIGLAIQY 304
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
++NPFPWMSE IDL KEKNFFETRVTEYQ A L+WD
Sbjct: 305 G-SQNPFPWMSETIDLTKEKNFFETRVTEYQSAASLEWD 342
>gi|297621807|ref|YP_003709944.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia
chondrophila WSU 86-1044]
gi|297377108|gb|ADI38938.1| ribonucleoside-diphosphate reductase beta subunit [Waddlia
chondrophila WSU 86-1044]
Length = 344
Score = 290 bits (741), Expect = 2e-76, Method: Composition-based stats.
Identities = 193/340 (56%), Positives = 255/340 (75%), Gaps = 5/340 (1%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
R D K+++N DVNQLLPLKY WAWE YL+ C NHWMP+EVPM D+ WKS +
Sbjct: 9 TGRFRSDQKKLINCSEVDVNQLLPLKYKWAWEHYLNGCANHWMPSEVPMTKDIETWKS-D 67
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
+++DERL+IKRNLGFFA++ESLVANN+VLAI++H++N ECRQYLLRQAFEEA+HSH F
Sbjct: 68 SISEDERLLIKRNLGFFATAESLVANNLVLAIFKHVTNAECRQYLLRQAFEEALHSHAFL 127
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
YI+ SLGL+E E+FNMYRE+ +I+ K + +Q T+ L T T Q+FL++L +
Sbjct: 128 YIVDSLGLEEQEIFNMYREISTISEKDEFEMQLTKGLIDG--ETKTLAGKQQFLKNLVGY 185
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
Y++ EG++FY+GFA +LSL R N M GI EQ+QYI+RDE++HLNFGID+IN IK ENP +
Sbjct: 186 YIIMEGIFFYSGFAMVLSLHRRNIMPGIGEQFQYILRDETIHLNFGIDLINGIKAENPEI 245
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
W ++ + ++ +A LEIAYA E +P G +GLNA +Y+Q++A+RR +IGL +
Sbjct: 246 WNEDLTDEINGLVQQAVELEIAYAKECLPHGVLGLNAGLFVEYVQYVADRRLERIGLSAI 305
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+K + NPFPWMSE +DL KEKNFFETRVTEYQ A L WD
Sbjct: 306 YK-SSNPFPWMSETMDLTKEKNFFETRVTEYQSAAVLSWD 344
>gi|330921941|ref|XP_003299625.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1]
gi|311326599|gb|EFQ92269.1| hypothetical protein PTT_10664 [Pyrenophora teres f. teres 0-1]
Length = 410
Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats.
Identities = 101/351 (28%), Positives = 161/351 (45%), Gaps = 27/351 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A+ + P A + D+ +L L P+KY W+ Y A + W E+ +
Sbjct: 52 ADAEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 111
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DL W + L DDER I L FFA+S+ +V N+V + PE R + Q
Sbjct: 112 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYGFQI 169
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E VHS T+ +I + + + LFN +P I KA+WAL++
Sbjct: 170 MMENVHSETYSLLIDTYISEPRQRKYLFNAIDNIPCIRKKADWALRWI------------ 217
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D + F L F V EG++F FA I L + M G+ + I RDE +H +F
Sbjct: 218 SDKNSTFANRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFA 276
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + + + ++ R ++ EA +E + + +P +G+NA QY++F
Sbjct: 277 CLLFSLLNN-------RPSKESVRAIITEAVEIEQEFLSDALPCALLGMNATLMCQYIEF 329
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+A+R +G ++ T NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 330 VADRLLLALGNTKVYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 378
>gi|189219089|ref|YP_001939730.1| ribonucleotide-diphosphate reductase subunit beta
[Methylacidiphilum infernorum V4]
gi|189185947|gb|ACD83132.1| Ribonucleotide reductase, beta subunit [Methylacidiphilum
infernorum V4]
Length = 361
Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats.
Identities = 194/339 (57%), Positives = 262/339 (77%), Gaps = 3/339 (0%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+KR+NV++KR++N ++ DVNQL+PLKY WAWE YL+ C N+W+P+EVPMQ D+ LWKS N
Sbjct: 25 KKRINVEEKRLINCKAVDVNQLMPLKYKWAWEHYLNGCANNWLPSEVPMQRDVELWKS-N 83
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L++DERL+I RNLGFFA+ ESLV NNIVLAI++ ++N E RQYLLRQA+EEAVH+H F
Sbjct: 84 RLSNDERLVIMRNLGFFATGESLVGNNIVLAIFKFVTNAEARQYLLRQAYEEAVHTHAFL 143
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
YI+ SLGLDE E+FNMY EV SI+ K + + T+ + F T + + Q+F+++L F
Sbjct: 144 YIVESLGLDEREVFNMYHEVNSISNKDQFEMTLTEDILREGFNTESVENIQKFVKNLVGF 203
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
YV+ EG++FY+GFA ILS R NKM GI EQ+QYI+RDE++HLNFGID+IN I+ ENP +
Sbjct: 204 YVIMEGIFFYSGFAMILSFHRQNKMTGIGEQFQYILRDETIHLNFGIDLINGIREENPEI 263
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
WT FQ++ M+ E+ LE AYA + +P+G +GLN+ + Y+++IA+RR +IG +
Sbjct: 264 WTAGFQKEIEEMIDESVRLEYAYARDCLPRGILGLNSALFKDYVEYIADRRLERIGFKAK 323
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
+ ++NPFPWMSEV+DL KEKNFFETRVTEYQ GA L W
Sbjct: 324 YG-SKNPFPWMSEVMDLVKEKNFFETRVTEYQSGAVLNW 361
>gi|225684487|gb|EEH22771.1| ribonucleoside-diphosphate reductase small chain A
[Paracoccidioides brasiliensis Pb03]
Length = 413
Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats.
Identities = 98/356 (27%), Positives = 165/356 (46%), Gaps = 32/356 (8%)
Query: 2 ANNTGLSPIQ-----AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56
++ T + P++ + D+ +L L PLKY W+ Y A + W
Sbjct: 54 SDATPVKPVEQEKKIGSTAKDLEADEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTA 113
Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
E+ + DL W N L DDER I L FFA+S+ +V N+V + PE R +
Sbjct: 114 EEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCF 171
Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173
Q E +HS T+ +I + + + LF+ +P I KA+WA+++ +
Sbjct: 172 YGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIE------ 225
Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
D + F Q L F V EG++F FA I L + M G+ + I RDE L
Sbjct: 226 ------DKESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGL 278
Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
H +F + + ++ + + + ++ EA +E + + +P +G+NA
Sbjct: 279 HTDFACLLFSHLR-------HRPSPEAVQKIITEAVAIEQEFLTDALPCALLGMNAKLMC 331
Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
QY++F+A+R +G + ++ + NPF +M I L + NFFE RV +YQ+ +
Sbjct: 332 QYIEFVADRLLVALGNKKVYN-STNPFDFMD-NISLTGKTNFFEKRVGDYQKAGVM 385
>gi|298713498|emb|CBJ27053.1| Ribonucleoside-diphosphate reductase small chain [Ectocarpus
siliculosus]
Length = 504
Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats.
Identities = 92/328 (28%), Positives = 155/328 (47%), Gaps = 29/328 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ + A L P+K+ W+ Y A + W EV + D W+ LT +E+
Sbjct: 181 EPICRADPSRFVLFPIKHPELWDMYKKAKASFWTVEEVDLSQDSRDWE---ALTGNEQHF 237
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+S+ +V N+V + + PE R + Q E++H + ++ + D
Sbjct: 238 ISMVLAFFAASDGIVMENLVERFSQEVQLPEARCFYGFQIAMESIHQEMYALLLDTYIKD 297
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LFN Y ++P + KA+WA+++ + D F + L F V EG
Sbjct: 298 KQERDNLFNAYNDIPCVKQKADWAMRWIGS-------------DATFAERLVAFAAV-EG 343
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE LH +F + ++ K +
Sbjct: 344 VFFSGSFCAIFWLKKRGLMPGLTFSNEMISRDEGLHCDFACQLFASLEN-------KPSR 396
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ ++ EA +E ++ +P +G+NA QY++F+A+R +G + T+N
Sbjct: 397 ETVMAIVREAVEVEKSFICGALPCSLIGMNAGVMSQYIEFVADRLLGSLGYGKSYG-TQN 455
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
PF WM +I L+ + NFFE RV EYQ+
Sbjct: 456 PFDWMD-LISLQGKTNFFEKRVGEYQKA 482
>gi|189199548|ref|XP_001936111.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187983210|gb|EDU48698.1| ribonucleoside-diphosphate reductase subunit M2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 410
Score = 285 bits (728), Expect = 8e-75, Method: Composition-based stats.
Identities = 101/351 (28%), Positives = 160/351 (45%), Gaps = 27/351 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A++ + P A + D+ +L L P+KY W+ Y A + W E+ +
Sbjct: 52 ADDEEVKPTVAPTIKPEEADEPLLQENPGRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 111
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DL W + L DDER I L FFA+S+ +V N+V + PE R + Q
Sbjct: 112 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSSEVQIPEARCFYGFQI 169
Query: 122 FEEAVHSHTFQYIITSLG---LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E VHS T+ +I + LFN +P I KA+WAL++
Sbjct: 170 MMENVHSETYSLLIDTYISDTRQRKYLFNAIENIPCIRKKADWALRWI------------ 217
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D + F L F V EG++F FA I L + M G+ + I RDE +H +F
Sbjct: 218 SDKNSTFANRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFA 276
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + + + ++ R ++ EA +E + + +P +G+NA QY++F
Sbjct: 277 CLLFSLLNNRPSN-------EEVRAIITEAVEIEQEFLSDALPCALLGMNATLMCQYIEF 329
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+A+R +G ++ T NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 330 VADRLLLALGNTKVYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 378
>gi|297668213|ref|XP_002812343.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Pongo abelii]
Length = 449
Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats.
Identities = 95/337 (28%), Positives = 160/337 (47%), Gaps = 28/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L
Sbjct: 125 PDVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKP 181
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I
Sbjct: 182 EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLID 241
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LFN +P + KA+WAL++ D + + + + F
Sbjct: 242 TYIKDPKEREFLFNAIETLPCVKKKADWALRWI------------GDKEATYGERVVAFA 289
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
V EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 290 AV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------- 341
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F
Sbjct: 342 HKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVF 401
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 402 RV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 436
>gi|325181522|emb|CCA15972.1| ribonucleosidediphosphate reductase small chain put [Albugo
laibachii Nc14]
Length = 1611
Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats.
Identities = 89/352 (25%), Positives = 163/352 (46%), Gaps = 28/352 (7%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
++++ ++P + E + + L + L P++ W+ Y A + W E+
Sbjct: 49 LSDSNSITPFKEKEMNGQLLPEPFLRENPNRFVLFPIQQSEIWDMYKKAEASFWTAEEID 108
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ D+ W ++D+ER IK L FFA+S+ +V N+ + + PE R + Q
Sbjct: 109 LVHDMNDW---LNISDNERHFIKHVLAFFAASDGIVNENLAMNFSSEVQIPEARCFYGFQ 165
Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
E +HS + +I + D E L +P +T KA WAL++
Sbjct: 166 IAIENIHSEVYSLLIDTYIKDPTEKQHLLCAIETIPCVTNKAQWALKW------------ 213
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
D + V + EG++F F I L + M G+ + I RDE LH +F
Sbjct: 214 -CDPKCASFAERVVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLCFSNELISRDEGLHCDF 272
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ +++ + P + ++ +A ++E + +++P +G+N+ QY++
Sbjct: 273 ACLMYSKLVNKLP-------EASIHAIISDAVVIEQEFVRDSLPVELIGMNSSLMGQYIE 325
Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
F+A+R H +G+ L+ +T NPF WM +I L+ + NFFE RV EY + +
Sbjct: 326 FVADRLLHALGVSKLY-HTSNPFDWMD-MISLQGKTNFFEKRVGEYAKSGTI 375
>gi|119621373|gb|EAX00968.1| hCG23833, isoform CRA_b [Homo sapiens]
gi|119621374|gb|EAX00969.1| hCG23833, isoform CRA_b [Homo sapiens]
Length = 449
Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats.
Identities = 95/335 (28%), Positives = 159/335 (47%), Gaps = 28/335 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L +E
Sbjct: 127 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 183
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 184 RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 243
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D E LFN +P + KA+WAL++ D + + + + F V
Sbjct: 244 IKDPKEREFLFNAIETMPCVKKKADWALRWI------------GDKEATYGERVVAFAAV 291
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + M G+ + I RDE LH +F + + K
Sbjct: 292 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HK 343
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+
Sbjct: 344 PSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV 403
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 404 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 436
>gi|260064013|ref|NP_001159403.1| ribonucleoside-diphosphate reductase subunit M2 isoform 1 [Homo
sapiens]
Length = 449
Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats.
Identities = 95/335 (28%), Positives = 159/335 (47%), Gaps = 28/335 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L +E
Sbjct: 127 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 183
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 184 RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 243
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D E LFN +P + KA+WAL++ D + + + + F V
Sbjct: 244 IKDPKEREFLFNAIETMPCVKKKADWALRWI------------GDKEATYGERVVAFAAV 291
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + M G+ + I RDE LH +F + + K
Sbjct: 292 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HK 343
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+
Sbjct: 344 PSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV 403
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 404 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 436
>gi|282890382|ref|ZP_06298910.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499764|gb|EFB42055.1| hypothetical protein pah_c016o114 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 350
Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats.
Identities = 201/352 (57%), Positives = 256/352 (72%), Gaps = 3/352 (0%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M S + E KR+LN + DVNQL+PLKY WAWE YL+ C+N+WMP+EV
Sbjct: 1 MEEGIMSSCLIPEEAEAAAQQKRILNCKQVDVNQLMPLKYHWAWEHYLNGCHNNWMPSEV 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
PMQ D+ LWKS N L++DERL+I RNLGFF+++ESLV NNIVLAI++HL+N E RQYLLR
Sbjct: 61 PMQKDIELWKS-NRLSNDERLVIMRNLGFFSTAESLVGNNIVLAIFKHLTNAEARQYLLR 119
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
QAFEEAVH+HTF YI+ SL LD+ E+F+MY V SI AK + ++ T+ + FTT T
Sbjct: 120 QAFEEAVHTHTFHYIVESLSLDQREVFDMYNAVNSIHAKDAFEMKLTEEVMQEGFTTDTP 179
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ Q FL++L FY++ EG++FY+GF ILS R N M GI EQ+QYI+RDES+HLNFGI
Sbjct: 180 EGVQTFLKNLIGFYIIMEGIFFYSGFVMILSFHRKNIMTGIGEQFQYILRDESIHLNFGI 239
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
D+IN IK ENP +WT EF+ + M+ EA LEI YA + +P G +GLNA Y+ +I
Sbjct: 240 DLINTIKEENPEVWTPEFKDQIIDMVKEAVELEIQYAADCLPNGILGLNAALFRDYVGYI 299
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
A+RR +IGL+P + T NPFPWMSEV+DL KEKNFFETRVT+YQ GA L W
Sbjct: 300 ADRRLERIGLKPQYN-TANPFPWMSEVMDLDKEKNFFETRVTQYQSGAALVW 350
>gi|225561749|gb|EEH10029.1| ribonucleotide reductase M2 B [Ajellomyces capsulatus G186AR]
gi|240275354|gb|EER38868.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces
capsulatus H143]
gi|325091193|gb|EGC44503.1| ribonucleoside-diphosphate reductase subunit small [Ajellomyces
capsulatus H88]
Length = 413
Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats.
Identities = 97/332 (29%), Positives = 157/332 (47%), Gaps = 27/332 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
D+ +L + L PLKY W+ Y A + W E+ + DL W N L DDER
Sbjct: 78 DEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 135
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+V + PE R + Q E +HS T+ +I +
Sbjct: 136 FISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIK 195
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
+ + LF+ +P I KA+WA+++ + D D F Q L F V E
Sbjct: 196 EPKQRTYLFDAIETIPCIRKKADWAIRWIE------------DKDSTFAQRLVAFAAV-E 242
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 243 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLR-------HRPS 295
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ ++ EA +E + + +P +G+NA QY++F+A+R +G + ++ +
Sbjct: 296 PEAVEKIITEAVTIEQEFLSDALPVALLGMNAKLMCQYIEFVADRLLVALGNKKVYN-ST 354
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M I L + NFFE RV +YQ+ +
Sbjct: 355 NPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 385
>gi|302665732|ref|XP_003024474.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517]
gi|291188529|gb|EFE43863.1| hypothetical protein TRV_01368 [Trichophyton verrucosum HKI 0517]
Length = 529
Score = 282 bits (721), Expect = 5e-74, Method: Composition-based stats.
Identities = 95/343 (27%), Positives = 156/343 (45%), Gaps = 27/343 (7%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++ + ++ +L L P+KY W+ Y A + W E+ + D+ W
Sbjct: 186 VKPKTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 245
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
N L DDER I L FFA+S+ +V N++ + PE R + Q E +HS
Sbjct: 246 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 303
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
T+ +I + ++ + LF +P I KA+WA+++ Q D D F
Sbjct: 304 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKDSTFA 351
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
Q L F V EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 352 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLN 410
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ ++ EA +E + + +P +G+NA QY++F+A+R
Sbjct: 411 -------YRPDPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 463
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+G + + T NPF +M I L + NFFE RV +YQ+ +
Sbjct: 464 LGNKKFYN-TTNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 504
>gi|67515571|ref|XP_657671.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4]
gi|40746089|gb|EAA65245.1| hypothetical protein AN0067.2 [Aspergillus nidulans FGSC A4]
gi|259489743|tpe|CBF90266.1| TPA: Ribonucleotide reductase [Source:UniProtKB/TrEMBL;Acc:Q9HEW8]
[Aspergillus nidulans FGSC A4]
Length = 406
Score = 282 bits (721), Expect = 5e-74, Method: Composition-based stats.
Identities = 98/349 (28%), Positives = 164/349 (46%), Gaps = 31/349 (8%)
Query: 8 SPIQAGEKRVNVD----DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
P++ + ++V ++ +L L P+KY W+ Y A + W E+ +
Sbjct: 56 KPVEPSKAALDVKAIEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSK 115
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
DL W N L +DER I R L FFA+S+ +V N++ + PE R + Q
Sbjct: 116 DLHDWN--NRLNEDERYFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFYGFQIMI 173
Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
E +H+ T+ +I + + + LF+ +P I KA+WA+++ Q D
Sbjct: 174 ENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIKWIQ------------D 221
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ F Q L F V EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 222 KESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACL 280
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+ + + + ++ ++ EA +E + + +P +G+NA QY++F+A
Sbjct: 281 LFSHL-------NWRPSKKVVEDIIVEAVAIEKEFLTDALPCALLGMNAKLMCQYIEFVA 333
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+R +G + F T NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 334 DRLLVALGNKKYFNAT-NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 380
>gi|322693757|gb|EFY85606.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium
acridum CQMa 102]
Length = 411
Score = 282 bits (720), Expect = 8e-74, Method: Composition-based stats.
Identities = 103/341 (30%), Positives = 160/341 (46%), Gaps = 27/341 (7%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
A + D+ +L L P+KY W+ Y A + W E+ + DL W
Sbjct: 68 APGIKAEEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 125
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
N L DDE+ I L FFA+S+ +V N+V + PE R + Q E +HS T+
Sbjct: 126 NRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 185
Query: 132 QYIITSLGL---DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
+I + LFN +P I KA+WA+++ Q D + F Q
Sbjct: 186 SLLIDTYIKENAQRTYLFNAIDTIPCIRKKADWAIRWIQ------------DKESTFAQR 233
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L F V EG++F FA I L + M G+ + I RDE LH +F + + +K
Sbjct: 234 LVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHSHLKN- 291
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ +Q ++ +A +E + E +P +G+N+ +QY++F+A+R +G
Sbjct: 292 ------RASKQIIHDIITDAVAIEKEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALG 345
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
E ++K T NPF +M E I L + NFFE RV +YQ+ L
Sbjct: 346 NEKVYK-TSNPFDFM-ENISLGGKTNFFEKRVGDYQKAGVL 384
>gi|167837963|ref|ZP_02464822.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
thailandensis MSMB43]
Length = 303
Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats.
Identities = 191/303 (63%), Positives = 238/303 (78%)
Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
C NHWMP E+ M D+ALWK NGLT+DER ++KRNLGFF +++SL ANNIVL YRH++
Sbjct: 1 CANHWMPQEINMSRDIALWKDPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHIT 60
Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
PECRQ+LLRQAFEEA+H+H +QYI+ SLGLDEGE+FN Y EV +I AK + + + TL
Sbjct: 61 APECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYHEVAAIRAKDEFLIPFIHTL 120
Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
+ P+FTTGT +ADQ+ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+R
Sbjct: 121 TDPAFTTGTLEADQKLLKSLIVFACIMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILR 180
Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
DES+H NFGID+INQIK+ENPHLWT EF+ + R + A LE YA +TMP+G +GLNA
Sbjct: 181 DESMHCNFGIDLINQIKLENPHLWTAEFRAEIRELFKHAVDLEYRYAEDTMPRGVLGLNA 240
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ Y++FI+NRRC QIGL+PLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G L
Sbjct: 241 SMFKSYLRFISNRRCQQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGAL 300
Query: 350 KWD 352
W+
Sbjct: 301 SWE 303
>gi|261189551|ref|XP_002621186.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
dermatitidis SLH14081]
gi|239591422|gb|EEQ74003.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
dermatitidis SLH14081]
gi|239613047|gb|EEQ90034.1| ribonucleotide reductase small subunit RnrA [Ajellomyces
dermatitidis ER-3]
gi|327356917|gb|EGE85774.1| ribonucleotide reductase M2 B [Ajellomyces dermatitidis ATCC 18188]
Length = 413
Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats.
Identities = 98/351 (27%), Positives = 163/351 (46%), Gaps = 35/351 (9%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
TG+ ++A ++ +L + L PLKY W+ Y A + W E+ +
Sbjct: 67 KALTGMKALEA--------EEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTAEEIDL 118
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DL W N L DDER I L FFA+S+ +V N+V + PE R + Q
Sbjct: 119 SKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSSEVQVPEARCFYGFQI 176
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS T+ +I + + + LF+ +P I KA+WA+++ +
Sbjct: 177 MMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIE----------- 225
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D + F Q L F V EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 226 -DKESSFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 283
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + ++ + + ++ EA +E + + +P +G+NA QY++F
Sbjct: 284 CLLFSHLR-------HRPSPEAVERIITEAVTIEQEFLSDALPVALLGMNAKLMCQYIEF 336
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+A+R +G + ++ + NPF +M I L + NFFE RV +YQ+ +
Sbjct: 337 VADRLLVALGNKKVYN-STNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 385
>gi|260950985|ref|XP_002619789.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720]
gi|238847361|gb|EEQ36825.1| hypothetical protein CLUG_00948 [Clavispora lusitaniae ATCC 42720]
Length = 419
Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats.
Identities = 100/337 (29%), Positives = 157/337 (46%), Gaps = 27/337 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ D+ +L L P+KY W+ Y A + W E+ + D+ WK N +T
Sbjct: 88 KAQEKDEPLLVENKRRFVLFPIKYNEIWQMYKKAEASFWTAEEIDLSKDINDWK--NRMT 145
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
D+ER I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I
Sbjct: 146 DNERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLI 205
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
S D E LFN +P I KA WAL++ D + F + L F
Sbjct: 206 DSYIKDPKEADFLFNAIENIPCIKKKAEWALRWI------------ADDEALFAERLVAF 253
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
V EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 254 AAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHLNN----- 307
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+ ++ EA +E Y + +P +G+N QY++F+A+R +G + +
Sbjct: 308 --RPNPAIVEKIITEAVTIEKEYFTDALPASLLGMNCDLMCQYVEFVADRLLVALGNKKV 365
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ T NPF +M E I L + NFFE RV++YQ+ +
Sbjct: 366 YNVT-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 400
>gi|312216546|emb|CBX96496.1| similar to ribonucleoside-diphosphate reductase subunit M2
[Leptosphaeria maculans]
Length = 410
Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats.
Identities = 100/351 (28%), Positives = 159/351 (45%), Gaps = 27/351 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ + P A R + +L L P+KY W+ Y A + W E+ +
Sbjct: 51 EDASDHKPSTAPTIRPEEAHEPLLQENPQRFVLFPIKYHDVWQMYKKAEASFWTAEEIDL 110
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DL W + L DDER I L FFA+S+ +V N+V + PE R + Q
Sbjct: 111 SKDLHDWNKR--LNDDERFFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQI 168
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E VHS T+ +I + + + LFN +P I KA+WAL++
Sbjct: 169 MMENVHSETYSLLIDTYISEPRQRKYLFNAIDNIPCIRKKADWALRWI------------ 216
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D + F L F V EG++F FA I L + M G+ + I RDE +H +F
Sbjct: 217 SDKNSTFANRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFA 275
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + + T+ ++ + ++ EA +E + + +P +G+NA QY++F
Sbjct: 276 CLLFSLL-------NTRPSKESVQAIITEAVEIEKEFLSDALPCALLGMNATLMCQYIEF 328
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+A+R +G + T NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 329 VADRLLLSLGNTKFYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 377
>gi|332247268|ref|XP_003272775.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 1 [Nomascus leucogenys]
Length = 434
Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats.
Identities = 95/335 (28%), Positives = 159/335 (47%), Gaps = 28/335 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L +E
Sbjct: 112 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 168
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 169 RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 228
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D E LFN +P + KA+WAL++ D + + + + F V
Sbjct: 229 IKDPKEREFLFNAIETMPCVKKKADWALRWI------------GDKEATYGERVVAFAAV 276
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + M G+ + I RDE LH +F + + K
Sbjct: 277 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HK 328
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+
Sbjct: 329 PSEERVREIIINAVRIEQEFLTEALPVKLIGMNCILMKQYIEFVADRLMLELGFGKVFRV 388
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 389 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 421
>gi|322709430|gb|EFZ01006.1| ribonucleoside-diphosphate reductase M2 subunit [Metarhizium
anisopliae ARSEF 23]
Length = 414
Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats.
Identities = 103/341 (30%), Positives = 160/341 (46%), Gaps = 27/341 (7%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
A + D+ +L L P+KY W+ Y A + W E+ + DL W
Sbjct: 71 APGIKAEEVDEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 128
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
N L DDE+ I L FFA+S+ +V N+V + PE R + Q E +HS T+
Sbjct: 129 NRLNDDEKYFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 188
Query: 132 QYIITSLGL---DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
+I + LFN +P I KA+WA+++ Q D + F Q
Sbjct: 189 SLLIDTYIKENAQRTYLFNAIDTIPCIRKKADWAIRWIQ------------DKESTFAQR 236
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L F V EG++F FA I L + M G+ + I RDE LH +F + + +K
Sbjct: 237 LVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHSHLKN- 294
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ +Q ++ +A +E + E +P +G+N+ +QY++F+A+R +G
Sbjct: 295 ------RASKQVIYDIITDAVAIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALG 348
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
E ++K T NPF +M E I L + NFFE RV +YQ+ L
Sbjct: 349 NEKVYK-TSNPFDFM-ENISLGGKTNFFEKRVGDYQKAGVL 387
>gi|11878241|gb|AAG40862.1| ribonucleotide reductase [Emericella nidulans]
Length = 406
Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats.
Identities = 98/349 (28%), Positives = 164/349 (46%), Gaps = 31/349 (8%)
Query: 8 SPIQAGEKRVNVD----DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
P++ + ++V ++ +L L P+KY W+ Y A + W E+ +
Sbjct: 56 KPVEPSKAALDVKAIEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSK 115
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
DL W N L +DER I R L FFA+S+ +V N++ + PE R + Q
Sbjct: 116 DLHDWN--NRLNEDERYFISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFYGFQIMI 173
Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
E +H+ T+ +I + + + LF+ +P I KA+WA+++ Q D
Sbjct: 174 ENIHAETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIKWIQ------------D 221
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ F Q L F V EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 222 KESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACL 280
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+ + + + ++ ++ EA +E + + +P +G+NA QY++F+A
Sbjct: 281 LFSHL-------NWRPSKKVVEDIIVEAVAIEKEFLTDALPCALLGMNAKLMCQYIEFVA 333
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+R +G + F T NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 334 DRLLVALGNKEYFNAT-NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 380
>gi|126303832|ref|XP_001381111.1| PREDICTED: similar to hCG23833, [Monodelphis domestica]
Length = 493
Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 160/350 (45%), Gaps = 28/350 (8%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
++ + +D+ +L + P++Y W Y A + W EV +
Sbjct: 156 TEPVTKAPNEPASPSKEDEPLLRENPRRFVIFPIEYHDIWHMYKKAEASFWTAEEVDLSK 215
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ W++ L +E+ I L FFA+S+ +V N+V + + E R + Q
Sbjct: 216 DIQHWET---LKSEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAM 272
Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
E +HS + +I + D E LFN +P + KA+WAL++ D
Sbjct: 273 ENIHSEMYSLLIDTYIKDPKEREFLFNAIETLPCVKKKADWALRWI------------GD 320
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ + + + F V EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 321 NEATYGERVVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 379
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+ + K ++K + ++ A +E + E +P +G+N +QY++F+A
Sbjct: 380 MFKHLV-------HKPSEEKVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVA 432
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+R ++G +F+ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 433 DRLMLELGFSKIFRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 480
>gi|145249942|ref|XP_001401310.1| ribonucleoside-diphosphate reductase small chain [Aspergillus niger
CBS 513.88]
gi|134081995|emb|CAK46680.1| unnamed protein product [Aspergillus niger]
Length = 396
Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats.
Identities = 99/349 (28%), Positives = 162/349 (46%), Gaps = 31/349 (8%)
Query: 8 SPIQAGEKRVNVDD----KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
P++A + + + + +L L P+KY W+ Y A + W E+ +
Sbjct: 50 KPVEAPKVAPGIKEMEASEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSK 109
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
DL W N L DDER I L FFA+S+ +V N+V + PE R + Q
Sbjct: 110 DLHDWH--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMM 167
Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
E +HS T+ +I + + + LF+ +P I KA+WA+++ Q D
Sbjct: 168 ENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIAKKADWAIKWIQ------------D 215
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ F Q L F V EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 216 RESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACL 274
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+ + + + +Q ++ EA +E + + +P +G+N+ QY++F+A
Sbjct: 275 LFSHLNN-------RPSKQVVEDIIVEAVGIEQEFLTDALPVALLGMNSKLMCQYIEFVA 327
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+R +G + + T NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 328 DRLLVALGNKKYYNAT-NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 374
>gi|171687074|ref|XP_001908478.1| hypothetical protein [Podospora anserina S mat+]
gi|170943498|emb|CAP69151.1| unnamed protein product [Podospora anserina S mat+]
Length = 409
Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats.
Identities = 101/351 (28%), Positives = 163/351 (46%), Gaps = 27/351 (7%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
+ + A E + + D+ +L L P+KY W+ Y A + W E+ +
Sbjct: 57 KKEEIKTVAAPEPKQELLDEPLLTENPQRFVLFPIKYHEVWQMYKKAEASFWTAEEIDLS 116
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
DL W N L DDE+ I L FFA+S+ +V N+V + PE R + Q
Sbjct: 117 KDLHDW--SNKLNDDEKFFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGFQIM 174
Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
E +HS T+ +I + + + LFN +P I KA+WAL++
Sbjct: 175 MENIHSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI------------S 222
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
D D F Q L F V EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 223 DKDASFAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFAC 281
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+ + + + +Q ++ +A +E + E +P +G+N+ +QY++F+
Sbjct: 282 LLFSHLNN-------RPSKQLVEDIIRDAVTIEQEFLTEALPCALLGMNSNLMKQYIEFV 334
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
A+R +G + ++ + NPF +M E I L + NFFE RV EYQ+ +
Sbjct: 335 ADRLLVALGNDKIY-RSTNPFDFM-ENISLGGKTNFFEKRVGEYQKAGVMN 383
>gi|169860861|ref|XP_001837065.1| ribonucleotide reductase small subunit [Coprinopsis cinerea
okayama7#130]
gi|116501787|gb|EAU84682.1| ribonucleotide reductase small subunit [Coprinopsis cinerea
okayama7#130]
Length = 414
Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats.
Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 27/350 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
T L GE + ++ +L L P++Y W+ Y A + W E+ +
Sbjct: 63 DELTLLRRKFVGEVDLPESEEPLLKESKRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDL 122
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DL W N L D+ER I L FFA+S+ +V N++ + E R + Q
Sbjct: 123 SKDLHDWN--NKLNDNERHFISHVLAFFAASDGIVNENLLERFSNEVQAAEARCFYGFQI 180
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS T+ +I + D + LF+ +P I KA+WAL +
Sbjct: 181 MMENIHSETYSLLIDTYIKDPAQRDYLFDAVDTIPCIKKKADWALTWI------------ 228
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D F + L F V EG++F FA I L + M G+ + I RDE +H +F
Sbjct: 229 SDQKSTFAERLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFA 287
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + +K + + ++ EA +E + + +P +G+NA QY++F
Sbjct: 288 CLLFSHLKR-------RPHPDVVKRIITEAVAIEQEFLTDALPVKLIGMNAELMCQYIEF 340
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+A+R +G E ++ + NPF +M +I L+ + NFFE RV++Y +
Sbjct: 341 VADRLLVSLGNEKVYN-STNPFDFMD-MISLQGKTNFFEKRVSDYAKAGV 388
>gi|242777635|ref|XP_002479074.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces
stipitatus ATCC 10500]
gi|218722693|gb|EED22111.1| ribonucleotide reductase small subunit RnrA, putative [Talaromyces
stipitatus ATCC 10500]
Length = 406
Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats.
Identities = 94/333 (28%), Positives = 155/333 (46%), Gaps = 27/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L L P+KY W+ Y A + W E+ + DL W N L DDER
Sbjct: 72 NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ R L FFA+S+ +V N+V + PE R + Q E +HS T+ +I +
Sbjct: 130 FVSRVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYIN 189
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
+ + LF+ +P I KA+WAL++ D + F Q L F V E
Sbjct: 190 EPKQRTYLFDAIDNIPCIRKKADWALRWI------------SDKESTFAQRLVAFAAV-E 236
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G+ + I RDE LH +F + + + +
Sbjct: 237 GIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLNN-------RPN 289
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ ++ +A +E + + +P +G+N+ QY++F+A+R +G + + +
Sbjct: 290 PKVIEDIIVDAVAIEQEFLTDALPCSLLGMNSKLMCQYIEFVADRLLVALGNKKYYN-ST 348
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 349 NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVMN 380
>gi|156058956|ref|XP_001595401.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980]
gi|154701277|gb|EDO01016.1| hypothetical protein SS1G_03490 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 407
Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats.
Identities = 102/341 (29%), Positives = 165/341 (48%), Gaps = 27/341 (7%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
A + D+ +L + L P+KY W+ Y A + W E+ + DL W
Sbjct: 61 APGIKPEEADEPLLQENPNRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 118
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
N L DDER I L FFA+S+ +V N+V + PE R + Q E +HS T+
Sbjct: 119 NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 178
Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
+I + ++ + LFN +P I KA+WA+++ Q D + F Q
Sbjct: 179 SLLIDTYIKEQAQKTYLFNAIDTIPCIKKKADWAVKWIQ------------DKNSTFAQR 226
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L F V EG++F FA I L + M G+ + I RDE LH +F + + +K
Sbjct: 227 LVAFAAV-EGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGLHTDFACLLFSHLK-- 283
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ +Q + ++ EA +E + E +P +G+N+ +QY++F+A+R +G
Sbjct: 284 -----HRPSKQAVQDVITEAVEIEQEFLTEALPCALLGMNSTLMKQYIEFVADRLLVTLG 338
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ ++K + NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 339 NDKVYK-SANPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 377
>gi|150863757|ref|XP_001382334.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis
CBS 6054]
gi|149385013|gb|ABN64305.2| small subunit of ribonucleotide reductase [Scheffersomyces stipitis
CBS 6054]
Length = 417
Score = 278 bits (712), Expect = 6e-73, Method: Composition-based stats.
Identities = 100/333 (30%), Positives = 159/333 (47%), Gaps = 27/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +L + L P+KY W+ Y A + W E+ + D+ W N L D+ER
Sbjct: 89 KDEPLLMENTRRFVLFPIKYNEVWQMYKKAEASFWTAEEIDLSKDITDWN--NRLNDNER 146
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I S
Sbjct: 147 FFISRILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDSYI 206
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA+WAL++ D D F + L F V
Sbjct: 207 KDPKEADFLFNAIDNIPCIRKKADWALRWI------------SDDDALFGERLVAFAAV- 253
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 254 EGIFFSGSFASIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLFSHLQN-------RP 306
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ ++ EA +E + + +P +G+NA QY++F+A+R +G + ++ T
Sbjct: 307 DAEIVEKIITEAVKIEKEFFTDALPSSLLGMNAELMCQYVEFVADRLLVALGNKKVYNVT 366
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV++YQ+ +
Sbjct: 367 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 397
>gi|302904131|ref|XP_003049009.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729943|gb|EEU43296.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 389
Score = 278 bits (712), Expect = 7e-73, Method: Composition-based stats.
Identities = 103/338 (30%), Positives = 162/338 (47%), Gaps = 27/338 (7%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+ D+ +L L P+KY W+ Y A + W E+ + DL W N L
Sbjct: 50 EEAEEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRL 107
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T DE+ I L FFA+S+ +V N+V + PE R + Q E +HS T+ +
Sbjct: 108 TSDEQFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLL 167
Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
I + + + LFN +P I KA+WA+++ Q D D F Q L
Sbjct: 168 IDTYIKEPSQRTYLFNAIETIPCIRKKADWAIRWIQ------------DKDSSFAQRLVA 215
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
F V EG++F FA I L + M G+ + I RDE LH +F + + +K
Sbjct: 216 FAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHSHLK----- 269
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+ +Q + ++ +A +E + E +P +G+NA +QY++F+A+R +G E
Sbjct: 270 --GRASKQVIQDIITDAVTIEQEFLTEALPCALLGMNADLMKQYIEFVADRLLVALGNEK 327
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
++K + NPF +M E I L + NFFE RV +YQ+ L
Sbjct: 328 VYK-SANPFDFM-ENISLGGKTNFFEKRVGDYQKAGVL 363
>gi|303314521|ref|XP_003067269.1| ribonucleoside-diphosphate reductase small chain, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240106937|gb|EER25124.1| ribonucleoside-diphosphate reductase small chain, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|320037571|gb|EFW19508.1| ribonucleoside-diphosphate reductase small subunit [Coccidioides
posadasii str. Silveira]
Length = 408
Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats.
Identities = 97/351 (27%), Positives = 163/351 (46%), Gaps = 27/351 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ +P ++ + ++ +L L PLKY W+ Y A + W E+ +
Sbjct: 57 KPSAPEAPKKSLTPKELEAEEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTAEEIDL 116
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DL W + L DDER I R L FFA+S+ +V N+V + PE R + Q
Sbjct: 117 SKDLHDWNHR--LNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQI 174
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS T+ +I + + + LF+ +P I KA+WA+++ Q
Sbjct: 175 MMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIRKKADWAIRWIQ----------- 223
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D + F Q L F V EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 224 -DQESTFAQRLIAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 281
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + ++ + + + ++ EA +E + + +P +G+N+ QY++F
Sbjct: 282 CLLFSHLR-------HRPGPEAVQAIITEAVEIEKEFLTDALPCALLGMNSKLMCQYIEF 334
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+A+R +G + + T NPF +M I L + NFFE RV +YQ+ +
Sbjct: 335 VADRLLVALGNKKFYNAT-NPFDFMD-NISLSGKTNFFEKRVGDYQKAGVM 383
>gi|289620013|emb|CBI53457.1| unnamed protein product [Sordaria macrospora]
Length = 410
Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats.
Identities = 101/352 (28%), Positives = 161/352 (45%), Gaps = 28/352 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ I A + + +L L P+KY W+ Y A + W E+ +
Sbjct: 58 KKASEAKKI-APTLKPEEAAEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDL 116
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DL W N LTDDER + L FFA+S+ +V N+V + PE R + Q
Sbjct: 117 SKDLHDWN--NRLTDDERFFVSHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQI 174
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS T+ +I + + + LFN +P I KA+WAL++
Sbjct: 175 MMENIHSETYSLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI------------ 222
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D F Q L F V EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 223 TDKSSTFAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 281
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + + + +Q + ++ +A +E + E +P +G+NA +QY++F
Sbjct: 282 CLLFSHLNN-------RPSKQLIQDIIVDAVRIEQEFLTEALPCALLGMNADLMKQYIEF 334
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+A+R +G E ++ + NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 335 VADRLLVALGNEKVY-RSTNPFDFM-ENISLGGKTNFFEKRVADYQKAGVMN 384
>gi|212533263|ref|XP_002146788.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium
marneffei ATCC 18224]
gi|210072152|gb|EEA26241.1| ribonucleotide reductase small subunit RnrA, putative [Penicillium
marneffei ATCC 18224]
Length = 406
Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats.
Identities = 98/352 (27%), Positives = 159/352 (45%), Gaps = 27/352 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+P A + ++ +L L P+KY W+ Y A + W E+ +
Sbjct: 53 KPTVQATPKVAPSIKEMEANEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDL 112
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DL W N L DDER I L FFA+S+ +V N+V + PE R + Q
Sbjct: 113 SKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQI 170
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS T+ +I + + + LF+ +P I KA+WAL++
Sbjct: 171 MMENIHSETYSLLIDTYINEPKQRTYLFDAIDNIPCIRKKADWALRWI------------ 218
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D + F Q L F V EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 219 SDKESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 277
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + + T+ + ++ +A +E + + +P +G+N+ QY++F
Sbjct: 278 CMLFSHL-------NTRPNPKVIEDIIVDAVAIEQEFLTDALPCALLGMNSKLMCQYIEF 330
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+A+R +G + + T NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 331 VADRLLVALGNKKYYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVMN 380
>gi|255536887|ref|XP_002509510.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
communis]
gi|223549409|gb|EEF50897.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
communis]
Length = 329
Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats.
Identities = 92/333 (27%), Positives = 154/333 (46%), Gaps = 29/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P++Y WE Y A + W EV + DL W+S LT DE+
Sbjct: 6 EEPLLAPNPDRFCMFPIQYPEIWEMYKKAEASFWTAEEVDLSQDLRHWES---LTPDEKH 62
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + + E R + Q E +HS + ++ +
Sbjct: 63 FISHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIK 122
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF+ VP I KA WAL++ S + + + E
Sbjct: 123 DSNEKNRLFHAIETVPCIAKKAEWALKWIDGSES--------------FAERIIAFACVE 168
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + +K +
Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLKKKLS------- 221
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+++ + ++ +A +E + + +P VG+N QY++F+A+R +G + +
Sbjct: 222 EERVKGIVRDAVNIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGCGKEYNVS- 280
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV EYQ+ A +
Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKAAVMS 312
>gi|85109237|ref|XP_962820.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa
OR74A]
gi|30316285|sp|Q9C167|RIR2_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|16273691|gb|AAK14804.2| small subunit of ribonucleotide reductase [Neurospora crassa]
gi|28924456|gb|EAA33584.1| ribonucleoside-diphosphate reductase M2 subunit [Neurospora crassa
OR74A]
Length = 410
Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 99/342 (28%), Positives = 159/342 (46%), Gaps = 27/342 (7%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
A + ++ +L L P+KY W+ Y A + W E+ + DL W
Sbjct: 67 APTLKPEEANEPLLTENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN-- 124
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
N L DDE+ I L FFA+S+ +V N+V + PE R + Q E +HS T+
Sbjct: 125 NRLNDDEKFFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 184
Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
+I + + + LFN +P I KA+WAL++ D F Q
Sbjct: 185 SLLIDTYIKEPSQRTYLFNAIDTIPCIRKKADWALRWI------------TDKSSTFAQR 232
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L F V EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 233 LVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLNN- 290
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ +Q + ++ +A +E + E +P +G+NA +QY++F+A+R +G
Sbjct: 291 ------RPSKQLIQEIIVDAVRIEQEFLTEALPCALLGMNADLMKQYIEFVADRLLVALG 344
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
E ++ + NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 345 NEKIY-RSTNPFDFM-ENISLGGKTNFFEKRVGDYQKAGVMN 384
>gi|119174781|ref|XP_001239725.1| hypothetical protein CIMG_09346 [Coccidioides immitis RS]
Length = 408
Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 96/332 (28%), Positives = 157/332 (47%), Gaps = 27/332 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L L PLKY W+ Y A + W E+ + DL W + L DDER
Sbjct: 76 EEPLLQENPHRFVLFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNHR--LNDDERY 133
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I R L FFA+S+ +V N+V + PE R + Q E +HS T+ +I +
Sbjct: 134 FISRVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIK 193
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
+ + LF+ +P I KA+WA+++ Q D + F Q L F V E
Sbjct: 194 EPKQRTYLFDAIDTIPCIRKKADWAIRWIQ------------DQESTFAQRLIAFAAV-E 240
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 241 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLR-------HRPG 293
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + ++ EA +E + + +P +G+N+ QY++F+A+R +G + + T
Sbjct: 294 PEAVQAIITEAVEIEKEFLTDALPCALLGMNSKLMCQYIEFVADRLLVALGNKKFYNAT- 352
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M I L + NFFE RV +YQ+ +
Sbjct: 353 NPFDFMD-NISLSGKTNFFEKRVGDYQKAGVM 383
>gi|154296564|ref|XP_001548712.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana
B05.10]
gi|150843273|gb|EDN18466.1| ribonucleotide reductase small subunit [Botryotinia fuckeliana
B05.10]
Length = 407
Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 101/341 (29%), Positives = 164/341 (48%), Gaps = 27/341 (7%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
A + D+ +L + L P+KY W+ Y A + W E+ + DL W +
Sbjct: 61 APGIKPEEADEPLLQENPNRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWNER 120
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L DDER I L FFA+S+ +V N+V + PE R + Q E +HS T+
Sbjct: 121 --LNDDERYFISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETY 178
Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
+I + ++ + LFN +P I KA+WA+++ Q D + F Q
Sbjct: 179 SLLIDTYIKEQSQKTYLFNAIDTIPCIKKKADWAVKWIQ------------DKNSTFAQR 226
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L F V EG++F FA I L + M G+ + I RDE LH +F + + +K
Sbjct: 227 LVAFAAV-EGIFFSGSFASIFWLKKRGLMAGLTFSNELISRDEGLHTDFACLLFSHLK-- 283
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ +Q + ++ EA +E + E +P +G+N+ +QY++F+A+R +G
Sbjct: 284 -----HRPSKQAVQDVITEAVEIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLLSLG 338
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ +K + NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 339 NDKYYK-SANPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 377
>gi|2500209|sp|Q60561|RIR2_MESAU RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
AltName: Full=Ribonucleotide reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|49650|emb|CAA48232.1| ribonucleotide reductase [Mesocricetus auratus]
Length = 386
Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 95/346 (27%), Positives = 157/346 (45%), Gaps = 28/346 (8%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
P +V+D+ +L + P++Y W+ Y A + W EV + D+
Sbjct: 57 EPESKVSTNPSVEDEPLLRENPRRFVVFPIEYHDIWKMYKKAEASFWTAEEVDLSKDIQH 116
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
W+ L DER I L FFA+S+ +V N+V + + E R + Q E +H
Sbjct: 117 WE---ALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIH 173
Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
S + +I + D E LFN +P + KA+WAL++ +
Sbjct: 174 SEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIG-------------DKEA 220
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ V + EG++F FA I L + M G+ + I RDE LH +F +
Sbjct: 221 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKH 280
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R
Sbjct: 281 LV-------HKPSEQRVQEIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLM 333
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++G +FK ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 334 LELGFNKIFKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377
>gi|70997335|ref|XP_753417.1| ribonucleotide reductase small subunit RnrA [Aspergillus fumigatus
Af293]
gi|66851053|gb|EAL91379.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
fumigatus Af293]
gi|159126856|gb|EDP51972.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
fumigatus A1163]
Length = 405
Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats.
Identities = 94/332 (28%), Positives = 154/332 (46%), Gaps = 27/332 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L L P+KY W+ Y A + W E+ + DL W N L DDER
Sbjct: 72 NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N++ + PE R + Q E +HS T+ +I +
Sbjct: 130 FISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIK 189
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
+ + LF+ +P I KA WA+++ D + F Q L F V E
Sbjct: 190 EPKQRTYLFDAIDTIPCIRKKAQWAMRWI------------SDKESTFAQRLVAFAAV-E 236
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G+ + I RDE LH +F + + + +
Sbjct: 237 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL-------NHRPD 289
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
++ ++ EA +E + + +P +G+N+ QY++F+A+R +G + F +
Sbjct: 290 KKVIEDIIVEAVAIEQEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYFN-SP 348
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 349 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 379
>gi|116191729|ref|XP_001221677.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51]
gi|88181495|gb|EAQ88963.1| hypothetical protein CHGG_05582 [Chaetomium globosum CBS 148.51]
Length = 409
Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats.
Identities = 100/352 (28%), Positives = 162/352 (46%), Gaps = 28/352 (7%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
M + + A + + D+ +L L P+KY W+ Y A + W E+
Sbjct: 56 MKKKETSAAV-APTIKADEADEPLLQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEID 114
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ DL W N + DDE+ I L FFA+S+ +V N+V + PE R + Q
Sbjct: 115 LSKDLHDWN--NKINDDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQ 172
Query: 121 AFEEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
E +HS T+ +I + + LFN +P+I KA+WAL++
Sbjct: 173 IMMENIHSETYSLLIDTYIKEPAQRTHLFNAIDTIPAIRKKADWALRWI----------- 221
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
D F Q L F V EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 222 -TDQKSTFAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 279
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ + + + +Q ++ +A +E + E +P +G+N+ +QY++
Sbjct: 280 ACLLFSHLNN-------RPSKQIIEDIIVDAVRIEQEFLTEALPCALLGMNSNLMKQYIE 332
Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
F+A+R +G E ++ + NPF +M E I L + NFFE RV EYQ+ +
Sbjct: 333 FVADRLLVALGNEKVY-RSTNPFDFM-ENISLGGKTNFFEKRVGEYQKAGVM 382
>gi|149408710|ref|XP_001506085.1| PREDICTED: similar to 5,10-methenyltetrahydrofolate synthetase
[Ornithorhynchus anatinus]
Length = 394
Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 28/350 (8%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
L + + V+D+ +L + P++Y W+ Y A + W EV +
Sbjct: 57 QEPLESVVSSWASPRVEDEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSK 116
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ W+S L +E+ I L FFA+S+ +V N+V + + E R + Q
Sbjct: 117 DIQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAM 173
Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
E +HS + +I + + E LFN +P + KA+WAL++
Sbjct: 174 ENIHSEMYSLLIDTYIKEPKEREFLFNAIETLPCVKKKADWALRWIG------------- 220
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ + V + EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 221 DKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 280
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+ + K +++ + ++ A +E + E +P +G+N +QY++F+A
Sbjct: 281 MFKHLV-------HKPSEERVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVA 333
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+R ++G +FK ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 334 DRLLLELGFSKIFKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 381
>gi|310798394|gb|EFQ33287.1| ribonucleotide reductase [Glomerella graminicola M1.001]
Length = 413
Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats.
Identities = 98/346 (28%), Positives = 162/346 (46%), Gaps = 27/346 (7%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
P+ + D+ +L L P+KY W+ Y A + W E+ + DL
Sbjct: 66 KPVVVPGIKEQEMDEPLLQENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHD 125
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
W N + +DE+ I L FFA+S+ +V N+V + PE R + Q E +H
Sbjct: 126 WN--NKINEDEKYFISHILAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIH 183
Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
S T+ +I + + + LFN +P I KA+WAL++ D
Sbjct: 184 SETYSLLIDTYIKEPAQRTYLFNAIDTIPCIRKKADWALKWI------------SDEKSS 231
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
F Q L F V EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 232 FAQRLVAFAAV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSH 290
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+K + +Q + ++ +A +E + E +P +G+N+ +QY++F+A+R
Sbjct: 291 LKN-------RPSKQVIQDIIVDAVQIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLL 343
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+G + ++K + NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 344 VALGNDKVYK-SSNPFDFM-ENISLGGKTNFFEKRVADYQKAGVMN 387
>gi|119478853|ref|XP_001259462.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya
fischeri NRRL 181]
gi|119407616|gb|EAW17565.1| ribonucleotide reductase small subunit RnrA, putative [Neosartorya
fischeri NRRL 181]
Length = 405
Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats.
Identities = 94/332 (28%), Positives = 154/332 (46%), Gaps = 27/332 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L L P+KY W+ Y A + W E+ + DL W N L DDER
Sbjct: 72 NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N++ + PE R + Q E +HS T+ +I +
Sbjct: 130 FISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIK 189
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
+ + LF+ +P I KA WA+++ D + F Q L F V E
Sbjct: 190 EPKQRTYLFDAIDTIPCIAKKAQWAMRWI------------SDKESTFAQRLVAFAAV-E 236
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G+ + I RDE LH +F + + + +
Sbjct: 237 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL-------NHRPD 289
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
++ ++ EA +E + E +P +G+N+ QY++F+A+R +G + + +
Sbjct: 290 KKVVEDIIVEAVAIEQEFLTEALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYYN-SS 348
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 349 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 379
>gi|121713826|ref|XP_001274524.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
clavatus NRRL 1]
gi|119402677|gb|EAW13098.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
clavatus NRRL 1]
Length = 405
Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats.
Identities = 93/332 (28%), Positives = 154/332 (46%), Gaps = 27/332 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L L P+KY W+ Y A + W E+ + DL W N L DDER
Sbjct: 72 NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 129
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N++ + PE R + Q E +HS T+ +I +
Sbjct: 130 FISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMIENIHSETYSLLIDTYIK 189
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
+ + LF+ +P I KA WA+++ D + F Q L F V E
Sbjct: 190 EPKQRAYLFDAIDTIPCINKKAQWAMRWI------------SDKESSFGQRLVAFAAV-E 236
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G+ + I RDE LH +F + + + +
Sbjct: 237 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLNN-------RPD 289
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
++ ++ EA +E + + +P +G+N+ QY++F+A+R +G + + +
Sbjct: 290 KKVVEDIIVEAVAIEQEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNKKYYN-SP 348
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 349 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 379
>gi|315041979|ref|XP_003170366.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma
gypseum CBS 118893]
gi|311345400|gb|EFR04603.1| ribonucleoside-diphosphate reductase small subunit [Arthroderma
gypseum CBS 118893]
Length = 408
Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats.
Identities = 96/343 (27%), Positives = 157/343 (45%), Gaps = 27/343 (7%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++A + ++ +L L P+KY W+ Y A + W E+ + D+ W
Sbjct: 65 VKAKTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
N L DDER I L FFA+S+ +V N++ + PE R + Q E +HS
Sbjct: 125 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
T+ +I + ++ + LF +P I KA+WA+++ Q D D F
Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKDSTFA 230
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
Q L F V EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 231 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL- 288
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ ++ EA +E + + +P +G+NA QY++F+A+R
Sbjct: 289 ------NHRPEPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 342
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+G + + T NPF +M I L + NFFE RV +YQ+ +
Sbjct: 343 LGNKKFYN-TTNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 383
>gi|224129040|ref|XP_002328875.1| predicted protein [Populus trichocarpa]
gi|222839305|gb|EEE77642.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats.
Identities = 89/333 (26%), Positives = 155/333 (46%), Gaps = 29/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P++Y WE Y A + W EV + D+ W+ LT DE+
Sbjct: 6 EEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDIRHWE---NLTPDEKH 62
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + + E R + Q E +HS + ++ +
Sbjct: 63 FISHVLAFFAASDGIVLENLAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIK 122
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF+ VP + KA WAL++ D + F + L + E
Sbjct: 123 DSEEKNRLFHAIETVPCVAKKARWALRWI-------------DGSESFAERLVA-FACVE 168
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKKLS------- 221
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+++ + ++ +A +E + + +P VG+N QY++F+A+R +G ++
Sbjct: 222 EEQVKGIVKDAVDIEREFVVDALPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA- 280
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV EYQ+ + +
Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312
>gi|115387427|ref|XP_001211219.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
terreus NIH2624]
gi|114195303|gb|EAU37003.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
terreus NIH2624]
Length = 401
Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats.
Identities = 96/332 (28%), Positives = 156/332 (46%), Gaps = 27/332 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L L P+KY W+ Y A + W E+ + DL W N L +DER
Sbjct: 71 NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNEDERY 128
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+V + PE R + Q E +HS T+ +I +
Sbjct: 129 FISHVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMIENIHSETYSLLIDTYIK 188
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
+ + LF+ +P I KA+WA+++ Q D + F Q L F V E
Sbjct: 189 EPKQRTYLFDAIDNIPCIAKKADWAIKWIQ------------DQESTFGQRLVAFAAV-E 235
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G+ + I RDE LH +F + + + +
Sbjct: 236 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLNN-------RPS 288
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+Q ++ EA +E + + +P +G+N+ QY++F+A+R +G F ++
Sbjct: 289 KQVVEDIIVEAVAIEKEFLTDALPVALLGMNSKLMCQYIEFVADRLLVALGNNKYF-HST 347
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 348 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 378
>gi|326472581|gb|EGD96590.1| ribonucleotide reductase small subunit RnrA [Trichophyton tonsurans
CBS 112818]
Length = 408
Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats.
Identities = 94/343 (27%), Positives = 156/343 (45%), Gaps = 27/343 (7%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++ + ++ +L L P+KY W+ Y A + W E+ + D+ W
Sbjct: 65 VKPKTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
N L DDER I L FFA+S+ +V N++ + PE R + Q E +HS
Sbjct: 125 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
T+ +I + ++ + LF +P I KA+WA+++ Q D + F
Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKNSTFS 230
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
Q L F V EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 231 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL- 288
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ ++ EA +E + + +P +G+NA QY++F+A+R
Sbjct: 289 ------NYRPDPNAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 342
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+G + + T NPF +M I L + NFFE RV +YQ+ +
Sbjct: 343 LGNKKFYN-TTNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 383
>gi|169779219|ref|XP_001824074.1| ribonucleoside-diphosphate reductase small chain [Aspergillus
oryzae RIB40]
gi|238499845|ref|XP_002381157.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
flavus NRRL3357]
gi|83772813|dbj|BAE62941.1| unnamed protein product [Aspergillus oryzae]
gi|220692910|gb|EED49256.1| ribonucleotide reductase small subunit RnrA, putative [Aspergillus
flavus NRRL3357]
Length = 405
Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats.
Identities = 96/332 (28%), Positives = 153/332 (46%), Gaps = 27/332 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L L P+KY W+ Y A + W E+ + DL W N L DDER
Sbjct: 73 NEPLLQENPHRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWH--NRLNDDERF 130
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I R L FFA+S+ +V N++ + PE R + Q E +H+ T+ +I +
Sbjct: 131 FISRVLAFFAASDGIVNENLLERFSGEVQIPEARCFYGFQIMIENIHAETYSLLIDTYIK 190
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
+ + LF+ +P I KA+WA+++ Q D + F Q L F V E
Sbjct: 191 EPKQRTYLFDAIDTIPCIRKKADWAIRWIQ------------DQESTFGQRLVAFAAV-E 237
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 238 GIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLNNRPDP------ 291
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
Q ++ EA +E + + +P +G+N+ QY++F+A+R +G F T
Sbjct: 292 -QIVEDVIVEAVSIEKEFLTDALPCALLGMNSNLMCQYIEFVADRLLVALGNNKYFNAT- 349
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M I L + NFFE RV +YQ+ +
Sbjct: 350 NPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 380
>gi|224055741|ref|XP_002298630.1| predicted protein [Populus trichocarpa]
gi|222845888|gb|EEE83435.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats.
Identities = 91/333 (27%), Positives = 156/333 (46%), Gaps = 29/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P++Y WE Y A + W EV + D+ W+ LT DE+
Sbjct: 6 EEPLLAENPDRFCMFPIQYPSIWEMYKKAEASFWTAEEVDLSSDVGHWE---NLTPDEKH 62
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V NI + + E R + Q E +HS + ++ +
Sbjct: 63 FISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIK 122
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF+ VP + KA WAL++ D + F + L + E
Sbjct: 123 DSTEKNRLFHAIETVPCVAKKAEWALRWI-------------DGGESFAERLIA-FACVE 168
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKKLS------- 221
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+++ + ++ EA +E + +++P VG+N QY++F+A+R +G ++
Sbjct: 222 EERVKGIVKEAVDIEREFVVDSLPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA- 280
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV EYQ+ + +
Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312
>gi|258567064|ref|XP_002584276.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus
reesii 1704]
gi|237905722|gb|EEP80123.1| ribonucleoside-diphosphate reductase small chain [Uncinocarpus
reesii 1704]
Length = 401
Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats.
Identities = 99/352 (28%), Positives = 160/352 (45%), Gaps = 27/352 (7%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ + P +A + ++ +L L PLKY W+ Y A + W E+
Sbjct: 49 IKPSAPEEPKKALSPKELEAEEPLLQENPQRFVLFPLKYHEIWQMYKKAEASFWTAEEID 108
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ DL W + L DDER I R L FFA+S+ +V N+V + PE R + Q
Sbjct: 109 LSKDLHDWNHR--LNDDERYFISRVLAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQ 166
Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
E +HS T+ +I + + + LF +P I KA+WA+++ Q
Sbjct: 167 IMMENIHSETYSLLIDTYIKEPKQRTYLFEALDNIPCIRKKADWAIRWIQ---------- 216
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
D D F Q L F V EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 217 --DKDSTFAQRLIAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 273
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ + I+ + ++ EA +E + + +P +G+N+ QY++
Sbjct: 274 ACLLFSHIR-------HRPTPAAVEAIITEAVEIEKEFLTDALPCALLGMNSKLMCQYIE 326
Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
F+A+R +G + + + NPF +M I L + NFFE RV +YQ+ +
Sbjct: 327 FVADRLLVALGNKKFY-HATNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 376
>gi|302409182|ref|XP_003002425.1| ribonucleoside-diphosphate reductase small chain [Verticillium
albo-atrum VaMs.102]
gi|261358458|gb|EEY20886.1| ribonucleoside-diphosphate reductase small chain [Verticillium
albo-atrum VaMs.102]
Length = 414
Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats.
Identities = 101/351 (28%), Positives = 161/351 (45%), Gaps = 27/351 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
G + A + D+ +L L P+KY W+ Y A + W E+ +
Sbjct: 61 KREEGDKAVVAPGIKDFEADEPLLRENGQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDL 120
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DL W N + DDE+ I L FFA+S+ +V N+V + PE R + Q
Sbjct: 121 SKDLHDWN--NKINDDEKYFISHILAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQI 178
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS T+ +I + + + LFN +P I KA+WAL +
Sbjct: 179 MMENIHSETYSLLIDTYIKEPAQRTYLFNAIDTIPCIRKKADWALTWI------------ 226
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D F L + V EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 227 TDKKSTFATRLVA-FAVVEGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 285
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + + + +Q + ++ +A +E + E +P G +G+NA +QY++F
Sbjct: 286 CLLFSHLNN-------RPSKQTVQDIVTDAVNIEQEFLTEALPCGLLGMNATLMKQYIEF 338
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+A+R +G E ++K T NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 339 VADRLLVALGNEKVYKAT-NPFDFM-ENISLGGKTNFFEKRVADYQKAGVM 387
>gi|50545856|ref|XP_500466.1| YALI0B03630p [Yarrowia lipolytica]
gi|49646332|emb|CAG82692.1| YALI0B03630p [Yarrowia lipolytica]
Length = 403
Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats.
Identities = 97/337 (28%), Positives = 161/337 (47%), Gaps = 27/337 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
R + D+ +L L P++Y W+ Y A + W E+ + D+ W+ N L
Sbjct: 71 RESEKDEPLLKENHRRFVLFPIQYHEIWQMYKKAEASFWTAEEIDLGKDMGDWE--NRLN 128
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+DER I L FFA+S+ +V N+V + PE + + Q E +HS T+ +I
Sbjct: 129 NDERFFISHVLAFFAASDGIVNENLVERFSGEVQAPEAKCFYGFQIMMENIHSETYSLLI 188
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E LFN +P I KA+WAL++ D + F + L F
Sbjct: 189 DTYIKDPKERTYLFNAIETIPCIKKKADWALKWI------------SDEESTFGERLIAF 236
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
V EG++F FA I L + M G+ + I RDE LH +F + + ++
Sbjct: 237 AAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLEN----- 290
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+ ++ ++ EA +E + + +P G +G+NA QY++F+A+R +G +
Sbjct: 291 --RPSKKIVEDVIVEAVGIEQEFLTDALPCGLLGMNAKLMCQYIEFVADRLLVALGNSKV 348
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ + NPF +M E I L + NFFE RV++YQ+ +
Sbjct: 349 YN-STNPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 383
>gi|46122063|ref|XP_385585.1| hypothetical protein FG05409.1 [Gibberella zeae PH-1]
Length = 399
Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats.
Identities = 102/333 (30%), Positives = 163/333 (48%), Gaps = 27/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+D+ +L L P+KY W+ Y A + W E+ + DL W N LT DE+
Sbjct: 65 EDEPILQENPQRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLTSDEQ 122
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I L FFA+S+ +V N+V + PE R + Q E +HS T+ +I +
Sbjct: 123 YFISHILAFFAASDGIVNENLVERFSGEVQIPEARCFYGFQIMMENIHSETYSLLIDTYI 182
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D + LFN +P I KA+WA+++ Q D + F Q L F V
Sbjct: 183 KDPAQRTYLFNAVDTIPCIRKKADWAIRWIQ------------DKNSTFAQRLVAFAAV- 229
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G++ + I RDE LH +F + + +K +
Sbjct: 230 EGIFFSGAFASIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLHSHLK-------GRA 282
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+Q + ++ +A +E + E +P +G+N+ +QY++F+A+R +G E ++K +
Sbjct: 283 SKQMIQDIITDAVSIEQEFLTEALPCALLGMNSNLMKQYIEFVADRLLVALGNEKVYK-S 341
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV +YQ+ L
Sbjct: 342 TNPFDFM-ENISLGGKTNFFEKRVADYQKAGVL 373
>gi|302843870|ref|XP_002953476.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f.
nagariensis]
gi|300261235|gb|EFJ45449.1| hypothetical protein VOLCADRAFT_109884 [Volvox carteri f.
nagariensis]
Length = 400
Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats.
Identities = 92/344 (26%), Positives = 159/344 (46%), Gaps = 29/344 (8%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ ++ D + +L+ D + P+KY WE Y A + W EV + DD+ W
Sbjct: 67 ELFTSPRKSMRDPEPLLDENPDRFCMFPIKYPKIWEMYKKAEASFWTAEEVDLGDDMKHW 126
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ L+D ER I L FFA+S+ +V N+ + + + PE R + Q E +HS
Sbjct: 127 E---KLSDGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVAIENIHS 183
Query: 129 HTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+ ++ + D E LF+ VP I KA WA+++ + + F
Sbjct: 184 EMYSLLLETYIKDPIEKHKLFHSIETVPCIKKKAQWAIKWIGS-------------ESSF 230
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ L F V EG++F F I L + M G+ + I RDE LH +F + +
Sbjct: 231 PERLVAFAAV-EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYGML 289
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ + + + ++ EA +E + + +P +G+N+ QY++F+A+R
Sbjct: 290 SKQL-------EESRIKEIICEAVDIENEFCTDALPVDLIGMNSRLMAQYIEFVADRLLV 342
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+G + T NPF +M +I L+ + NFFE RV +YQ+ +
Sbjct: 343 ALGCSKAYNVT-NPFDFMD-MISLQGKTNFFEKRVGDYQKSGVM 384
>gi|255954081|ref|XP_002567793.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589504|emb|CAP95650.1| Pc21g07530 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 400
Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats.
Identities = 97/365 (26%), Positives = 159/365 (43%), Gaps = 41/365 (11%)
Query: 2 ANNTGLSPIQAGEKRVNVD--------------DKRMLNARSDVNQLLPLKYGWAWEKYL 47
N L P+ ++ + +L + P+KY W+ Y
Sbjct: 35 KENASLKPVDTPIEKPTEKALENKPLTVKELEATEPLLQENPHRFVMFPIKYHEIWQMYK 94
Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRH 107
A + W E+ + DL W N L DDER I L FFA+S+ +V N+V
Sbjct: 95 KAEASFWTAEEIDLSKDLHDWH--NRLNDDERYFISHVLAFFAASDGIVNENLVERFSAE 152
Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQ 164
+ PE R + Q E +HS T+ +I + + + LF+ +P IT KANWA++
Sbjct: 153 VQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCITKKANWAIR 212
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ D + F L F V EG++F FA I L + M G+
Sbjct: 213 WIN------------DRESTFASRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSN 259
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I RDE LH +F + + + + + ++ EA +E + + +P
Sbjct: 260 ELISRDEGLHTDFACLLFSH-------MNHRPDPKVVEEIIVEAVGIEQEFLTDALPCAL 312
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
+G+N+ QY++F+A+R +G + + + NPF +M E I L + NFFE RV +YQ
Sbjct: 313 LGMNSKLMCQYIEFVADRLLVALGNKKYYN-SANPFDFM-ESISLAGKTNFFEKRVGDYQ 370
Query: 345 QGAEL 349
+ +
Sbjct: 371 KAGVM 375
>gi|302497417|ref|XP_003010709.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371]
gi|291174252|gb|EFE30069.1| hypothetical protein ARB_03411 [Arthroderma benhamiae CBS 112371]
Length = 408
Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats.
Identities = 95/343 (27%), Positives = 156/343 (45%), Gaps = 27/343 (7%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++ + ++ +L L P+KY W+ Y A + W E+ + D+ W
Sbjct: 65 VKPKTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
N L DDER I L FFA+S+ +V N++ + PE R + Q E +HS
Sbjct: 125 --NRLNDDERYFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
T+ +I + ++ + LF +P I KA+WA+++ Q D D F
Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKDSTFA 230
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
Q L F V EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 231 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL- 288
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ ++ EA +E + + +P +G+NA QY++F+A+R
Sbjct: 289 ------NYRPDPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 342
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+G + + T NPF +M I L + NFFE RV +YQ+ +
Sbjct: 343 LGNKKFYN-TTNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 383
>gi|307110551|gb|EFN58787.1| hypothetical protein CHLNCDRAFT_34102 [Chlorella variabilis]
Length = 335
Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats.
Identities = 90/340 (26%), Positives = 156/340 (45%), Gaps = 29/340 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E+ + + +L + D + P+KY WE Y A + W EV + D+ W+
Sbjct: 6 EQSLEDSQEPLLASNDDRFVMFPIKYRDIWEMYKKAEASFWTAEEVDLGSDVKDWE---R 62
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L+DDER + L FFA+S+ +V N+ + + PE R + Q E +HS +
Sbjct: 63 LSDDERHFVSHVLAFFAASDGIVNENLGARFMQEVQVPEARAFYGFQIAMENIHSEMYSL 122
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
++ + D E LF+ VP + KA+WAL++ F + L
Sbjct: 123 LLEAYIKDPKEKDKLFHAIDTVPVVRKKAHWALKWIN-------------GSDLFSERLI 169
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
+ EG++F F I L + M G+ + I RDE LH +F + I
Sbjct: 170 A-FACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYRHIHNRLS 228
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
+++ ++ +A +E + + +P +G+N+ QY++F+A+R +G
Sbjct: 229 -------EERVAEIVTQAVEIEKEFICDALPVDLIGMNSRLMGQYIEFVADRLLVALGNP 281
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++ + NPF WM E+I L+ + NFFE RV +YQ+ +
Sbjct: 282 KVYNVS-NPFDWM-ELISLQGKTNFFEKRVGDYQKAGVMN 319
>gi|327298815|ref|XP_003234101.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum
CBS 118892]
gi|326464279|gb|EGD89732.1| ribonucleotide reductase small subunit RnrA [Trichophyton rubrum
CBS 118892]
Length = 408
Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats.
Identities = 94/343 (27%), Positives = 156/343 (45%), Gaps = 27/343 (7%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++ + ++ +L L P+KY W+ Y A + W E+ + D+ W
Sbjct: 65 VKPKTPKELEAEEPLLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
N L DDER I L FFA+S+ +V N++ + PE R + Q E +HS
Sbjct: 125 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
T+ +I + ++ + LF +P I KA+WA+++ Q D + F
Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKNSTFA 230
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
Q L F V EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 231 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL- 288
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ ++ EA +E + + +P +G+NA QY++F+A+R
Sbjct: 289 ------NYRPDPSAVEAIITEAVTIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 342
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+G + + T NPF +M I L + NFFE RV +YQ+ +
Sbjct: 343 LGNKKFYN-TTNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 383
>gi|148705043|gb|EDL36990.1| ribonucleotide reductase M2 [Mus musculus]
Length = 411
Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats.
Identities = 94/338 (27%), Positives = 156/338 (46%), Gaps = 28/338 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+V+D+ +L + P++Y W+ Y A + W EV + D+ W+ L
Sbjct: 86 NPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALK 142
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
DER I L FFA+S+ +V N+V + + E R + Q E +HS + +I
Sbjct: 143 PDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLI 202
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E LFN +P + KA+WAL++ + + V
Sbjct: 203 DTYIKDPKEREYLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVA 249
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 250 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------ 303
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
K +Q+ R ++ A +E + E +P +G+N +QY++F+A+R ++G +
Sbjct: 304 -HKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKI 362
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
F+ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 363 FRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 398
>gi|291220709|ref|XP_002730368.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
[Saccoglossus kowalevskii]
Length = 402
Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats.
Identities = 101/352 (28%), Positives = 160/352 (45%), Gaps = 31/352 (8%)
Query: 5 TGLSPIQ---AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
T + P++ K N +D+ +L + P+KY W+ Y A + W EV +
Sbjct: 63 TDVEPVKLEKRKSKPQNNEDEPLLRDNPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDL 122
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DLA W S L DDER I L FFA+S+ +V N+V + + E R + Q
Sbjct: 123 SKDLAHWAS---LKDDERHFISHVLAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQI 179
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS + +I + D E LFN +P + KA WAL +
Sbjct: 180 AIENIHSEMYSLLIDTYIRDPQEREYLFNAIETLPPVKRKAQWALNWINA---------- 229
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D + V + EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 230 ---DNATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 286
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + + K QQ+ ++ +A +E + + +P +G+N +QY++F
Sbjct: 287 CLMFSHLTN-------KPSQQRIIEIIRDAVKIEQEFLTDALPVSLIGMNKDLMKQYIEF 339
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+A+R +G ++ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 340 VADRLLLDLGCNKIYN-KENPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 389
>gi|169613737|ref|XP_001800285.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15]
gi|111061216|gb|EAT82336.1| hypothetical protein SNOG_10001 [Phaeosphaeria nodorum SN15]
Length = 409
Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats.
Identities = 97/342 (28%), Positives = 157/342 (45%), Gaps = 28/342 (8%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
A + + +L + L P+KY W+ Y A + W E+ + DL W +
Sbjct: 61 APTIKEEEAHEPLLQENPNRFVLFPIKYHDVWQMYKKAEASFWTAEEIDLSKDLHDWNKR 120
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIV-LAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
L DDER I L FFA+S+ +V N+V + PE R + Q E +HS T
Sbjct: 121 --LNDDERFFISHVLAFFAASDGIVNENLVDERFSSEVQIPEARCFYGFQIMMENIHSET 178
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I + + + LFN +P I KA+WAL++ D + F
Sbjct: 179 YSLLIDTYISEPRQRTYLFNAIDNIPCIRKKADWALKWI------------SDKNSTFAN 226
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
L F V EG++F FA I L + M G+ + I RDE +H +F + + +
Sbjct: 227 RLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLLFSLL-- 283
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
T+ + + ++ EA +E + E +P +G+N+ QY++F+A+R +
Sbjct: 284 -----NTRPSKDAVKAIITEAVEIEQEFLTEALPCALLGMNSTLMCQYIEFVADRLLLAL 338
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
G ++ T NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 339 GNTKVYNAT-NPFDFM-ENISLAGKTNFFEKRVGDYQKAGVM 378
>gi|159465835|ref|XP_001691128.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas
reinhardtii]
gi|158279814|gb|EDP05574.1| ribonucleoside-diphosphate reductase small chain [Chlamydomonas
reinhardtii]
Length = 394
Score = 275 bits (702), Expect = 8e-72, Method: Composition-based stats.
Identities = 98/350 (28%), Positives = 163/350 (46%), Gaps = 30/350 (8%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
+ L + R + ++ +L+ D + P+KY WE Y A + W EV +
Sbjct: 56 KGSNLRELFT-SPRKRMLEEPLLDENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLG 114
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
DD+ W+ L+D ER I L FFA+S+ +V N+ + + + PE R + Q
Sbjct: 115 DDMKHWE---KLSDGERHFISHVLAFFAASDGIVLENLAIRFMKEVQLPEARAFYGFQVA 171
Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
E +HS + ++ S D E LF+ VP I KA WA+++ +
Sbjct: 172 IENIHSEMYSLLLESYIKDPQEKHKLFHSIETVPCIKKKAQWAMKWIGS----------- 220
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
D F + L F V EG++F F I L + M G+ + I RDE LH +F
Sbjct: 221 --DSVFSERLVAFAAV-EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 277
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+ + + T+ + + + ++ EA +E + E +P +G+N+ QY+QF+
Sbjct: 278 MLFSML-------NTRIDETRVKQIIVEAVEIEQEFCTEALPVDLIGMNSRLMAQYIQFV 330
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
A+R +G + NPF +M E+I L+ + NFFE RV +YQ+ +
Sbjct: 331 ADRLLVSLGCAKQYNVV-NPFEFM-EMISLQGKTNFFEKRVGDYQKNGVM 378
>gi|321476700|gb|EFX87660.1| hypothetical protein DAPPUDRAFT_306462 [Daphnia pulex]
Length = 378
Score = 275 bits (702), Expect = 8e-72, Method: Composition-based stats.
Identities = 91/338 (26%), Positives = 156/338 (46%), Gaps = 28/338 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
R N ++ +L + L P++Y W+ Y A + W EV + DL W + L
Sbjct: 51 RDNDQNEPLLRSNPSRFVLFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLKDW---DNLQ 107
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+ER + L FFA+S+ +V N+V + + PE R + Q E +HS + +I
Sbjct: 108 PNERHFVSHVLAFFAASDGIVNENLVERFAQEVQVPEARCFYGFQIAMENIHSEMYSLLI 167
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E LFN +P I KA WA+++ +P + V
Sbjct: 168 ETYIKDSAERTRLFNAVETMPCIAKKAEWAMKWIGNKDAP-------------YSERIVA 214
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++F FA I L + M G+ + I RDE LH +F + + + P
Sbjct: 215 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACVMFKHLVNKPP-- 272
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+++ +++ A +E + + +P +G+N QY++F+A+R ++G L
Sbjct: 273 -----KERIIEIINNAVKIEQEFLTDALPVEMIGMNCRLMRQYIEFVADRLLLELGCTKL 327
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ +ENPF +M I L+ + NFFE +V EYQ+ +
Sbjct: 328 YN-SENPFDFMEH-ISLEGKTNFFEKKVGEYQKAGVMN 363
>gi|4557845|ref|NP_001025.1| ribonucleoside-diphosphate reductase subunit M2 isoform 2 [Homo
sapiens]
gi|400979|sp|P31350|RIR2_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
AltName: Full=Ribonucleotide reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|36155|emb|CAA42181.1| small subunit ribonucleotide reductase [Homo sapiens]
gi|251637|gb|AAA09577.1| ribonucleotide reductase R2 subunit [Homo sapiens]
gi|12804875|gb|AAH01886.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens]
gi|14029165|gb|AAK51163.1| ribonucleotide reductase M2 subunit [Homo sapiens]
gi|20988810|gb|AAH30154.1| Ribonucleotide reductase M2 polypeptide [Homo sapiens]
gi|62702173|gb|AAX93099.1| unknown [Homo sapiens]
gi|123981920|gb|ABM82789.1| ribonucleotide reductase M2 polypeptide [synthetic construct]
gi|123996753|gb|ABM85978.1| ribonucleotide reductase M2 polypeptide [synthetic construct]
gi|189053955|dbj|BAG36462.1| unnamed protein product [Homo sapiens]
gi|261861600|dbj|BAI47322.1| ribonucleotide reductase M2 [synthetic construct]
Length = 389
Score = 275 bits (702), Expect = 9e-72, Method: Composition-based stats.
Identities = 93/335 (27%), Positives = 156/335 (46%), Gaps = 28/335 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L +E
Sbjct: 67 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 123
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 124 RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 183
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D E LFN +P + KA+WAL++ + + V +
Sbjct: 184 IKDPKEREFLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVAFAA 230
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + M G+ + I RDE LH +F + + K
Sbjct: 231 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HK 283
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+
Sbjct: 284 PSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV 343
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 344 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 376
>gi|75076796|sp|Q4R7Q7|RIR2_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
AltName: Full=Ribonucleotide reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|67969020|dbj|BAE00865.1| unnamed protein product [Macaca fascicularis]
Length = 389
Score = 275 bits (702), Expect = 9e-72, Method: Composition-based stats.
Identities = 93/335 (27%), Positives = 156/335 (46%), Gaps = 28/335 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L +E
Sbjct: 67 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 123
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 124 RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 183
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D E LFN +P + KA+WAL++ + + V +
Sbjct: 184 IKDPKEREFLFNAIETMPCVEKKADWALRWIG-------------DKEATYGERVVAFAA 230
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + M G+ + I RDE LH +F + + K
Sbjct: 231 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HK 283
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+
Sbjct: 284 PSEERVREIIINAVRVEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV 343
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 344 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 376
>gi|10432587|dbj|BAB13815.1| ribonucleotide reductase small subunit [Lentinula edodes]
Length = 418
Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats.
Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 27/350 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
L GE + ++ +L L P++Y W+ Y A + W E+ +
Sbjct: 72 EELAALQKRFVGEVELPESEEPLLLESRRRFVLFPIQYHEIWQMYKKAEASFWTAEEMDL 131
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DL W N L D ER I R L FFA+S+ +V N++ + E R + Q
Sbjct: 132 SKDLHDWN--NRLNDSERFFISRVLAFFAASDGIVNENLLERFSNEVQVAEARCFYGFQI 189
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS T+ +I + D E LF+ +P I KA WAL++
Sbjct: 190 MMENIHSETYSLLIDTYIKDPVERDFLFDAIETIPCIKRKAEWALRWI------------ 237
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D F + L F V EG++F FA I + + M G+A + I RDE +H +F
Sbjct: 238 SDEHSVFGERLVAFAAV-EGIFFSGSFASIFWMKKRGLMPGLAFSNELISRDEGMHTDFA 296
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + ++ + ++ EA +E + + +P +G+NA QY++F
Sbjct: 297 CLLFSHLRR-------RPHPDTVERIIKEAVAIEQEFLTDALPVSLIGMNATLMCQYIEF 349
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+A+R +G + L+ + NPF +M +I L+ + NFFE RV++Y +
Sbjct: 350 VADRLLVALGNKKLYN-STNPFDFMD-MISLQGKTNFFEKRVSDYSKAGV 397
>gi|146418573|ref|XP_001485252.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC
6260]
gi|146390725|gb|EDK38883.1| hypothetical protein PGUG_02981 [Meyerozyma guilliermondii ATCC
6260]
Length = 418
Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats.
Identities = 95/333 (28%), Positives = 157/333 (47%), Gaps = 27/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +L + + P+KY W+ Y A + W E+ + D+ W N L D+ER
Sbjct: 89 KEEPLLMENTRRFVMFPIKYHEIWKMYKKAEASFWTAEEIDLGKDMHDWN--NRLNDNER 146
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 147 YFISRILAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYI 206
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA+WAL++ D D F + L F V
Sbjct: 207 KDPKEADFLFNAIENIPCIKKKADWALRWIN------------DDDALFGERLVAFAAV- 253
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G++ + I RDE LH +F + + ++
Sbjct: 254 EGIFFSGSFASIFWLKKRGLMPGLSFSNELICRDEGLHTDFACLLFSHLQNRPDP----- 308
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ ++ EA +E + + +P +G+N QY++F+A+R +G + ++
Sbjct: 309 --EIVEKIITEAVDIEKEFFTDALPISLLGMNCKLMCQYVEFVADRLLVALGNKKIYNVA 366
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV++YQ+ +
Sbjct: 367 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 397
>gi|45184688|ref|NP_982406.1| AAL136Cp [Ashbya gossypii ATCC 10895]
gi|44980034|gb|AAS50230.1| AAL136Cp [Ashbya gossypii ATCC 10895]
Length = 422
Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats.
Identities = 97/337 (28%), Positives = 157/337 (46%), Gaps = 27/337 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ ++ +L L P+KY W+ Y A + W E+ + D+ W N +T
Sbjct: 91 KEQEKNEPLLMENKRRFVLFPIKYHDIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMT 148
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
++ER I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I
Sbjct: 149 ENERFFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLI 208
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E LFN +P I KA WA+++ Q D D F + L F
Sbjct: 209 DTYIKDPKEADHLFNAIETIPEIKEKAEWAIRWIQ------------DKDALFAERLVAF 256
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
V EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 257 AAV-EGIFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLFAHLNN----- 310
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
K + ++ EA +E Y + +P +G+N+ QY++F+A+R +G +
Sbjct: 311 --KPDTEIVEKIITEAVEIEKRYFQDAIPVALLGMNSSLMNQYVEFVADRLLVALGNKKY 368
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ + NPF +M E I L + NFFE RV++YQ+ +
Sbjct: 369 YNVS-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 403
>gi|294659365|ref|XP_461732.2| DEHA2G04268p [Debaryomyces hansenii CBS767]
gi|199433907|emb|CAG90185.2| DEHA2G04268p [Debaryomyces hansenii]
Length = 426
Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats.
Identities = 95/333 (28%), Positives = 155/333 (46%), Gaps = 27/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +L + L P+KY W+ Y A + W E+ + D W L ++ER
Sbjct: 100 KEEPLLIENTRRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLGKDTHDWNE--KLNNNER 157
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 158 YFISRILAFFAASDGIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYI 217
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA+WAL++ D D F + L F V
Sbjct: 218 KDPKEADFLFNAIDNIPCIKKKADWALRWIN------------DDDALFGERLVAFAAV- 264
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 265 EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHLQNRPDAV---- 320
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ EA +E + + +P +G+N QY++F+A+R +G + ++ T
Sbjct: 321 ---IVERIITEAVTIEKEFFVDALPISLLGMNCNLMCQYVEFVADRLLVALGNKKVYNVT 377
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV++YQ+ +
Sbjct: 378 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 408
>gi|293343290|ref|XP_002725449.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Rattus
norvegicus]
gi|293355176|ref|XP_002728627.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Rattus
norvegicus]
Length = 390
Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats.
Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 28/338 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ +++++ +L + P++Y W+ Y A + W EV + D+ W+ L
Sbjct: 65 KPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALK 121
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
DER I L FFA+S+ +V N+V + + E R + Q E +HS + +I
Sbjct: 122 PDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLI 181
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E LFN +P + KA+WAL++ + + V
Sbjct: 182 DTYIKDSKEREYLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVA 228
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 229 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------ 282
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R ++G +
Sbjct: 283 -HKPSEQRVKEIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKI 341
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
FK ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 342 FKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377
>gi|118089009|ref|XP_001231545.1| PREDICTED: similar to small subunit ribonucleotide reductase
isoform 1 [Gallus gallus]
Length = 392
Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats.
Identities = 91/352 (25%), Positives = 162/352 (46%), Gaps = 28/352 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ T ++ + + +++ +L + P++Y W+ Y A + W EV +
Sbjct: 53 SEGTPVTALCPPQVARGAEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDL 112
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DL W+S L +E+ I L FFA+S+ +V N+V + + E R + Q
Sbjct: 113 SKDLQHWES---LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQI 169
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS + +I + D E LFN +P + KA+WA+++
Sbjct: 170 AMENIHSEMYSLLIDTYIKDSKEREFLFNAIETLPCVKKKADWAIRWIG----------- 218
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
+ + V + EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 219 --DKKATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 276
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + K +++ + ++ A L+E + E +P +G+N +QY++F
Sbjct: 277 CLMFKHLIR-------KPSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEF 329
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+A+R ++G ++K ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 330 VADRLMLELGFRKIYKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 379
>gi|7106399|ref|NP_033130.1| ribonucleoside-diphosphate reductase subunit M2 [Mus musculus]
gi|132626|sp|P11157|RIR2_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
AltName: Full=Ribonucleotide reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|22218698|pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
gi|22218699|pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
gi|52696260|pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Oxidizing Conditions. A Fully Occupied
Dinuclear Iron Cluster.
gi|52696261|pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Reducing Conditions. A Fully Occupied
Dinuclear Iron Cluster And Bound Acetate.
gi|157834262|pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
gi|50720|emb|CAA33707.1| M2 ribonucleotide reductase [Mus musculus]
gi|200768|gb|AAA40062.1| ribonucleotide reductase subunit M2 [Mus musculus]
gi|26354034|dbj|BAC40647.1| unnamed protein product [Mus musculus]
gi|54887418|gb|AAH85136.1| Ribonucleotide reductase M2 [Mus musculus]
gi|74139292|dbj|BAE40793.1| unnamed protein product [Mus musculus]
gi|74151119|dbj|BAE27683.1| unnamed protein product [Mus musculus]
gi|74179887|dbj|BAE36508.1| unnamed protein product [Mus musculus]
gi|74188932|dbj|BAE39238.1| unnamed protein product [Mus musculus]
gi|74189151|dbj|BAE39331.1| unnamed protein product [Mus musculus]
gi|74206394|dbj|BAE24918.1| unnamed protein product [Mus musculus]
gi|74211991|dbj|BAE40165.1| unnamed protein product [Mus musculus]
Length = 390
Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats.
Identities = 94/338 (27%), Positives = 156/338 (46%), Gaps = 28/338 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+V+D+ +L + P++Y W+ Y A + W EV + D+ W+ L
Sbjct: 65 NPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALK 121
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
DER I L FFA+S+ +V N+V + + E R + Q E +HS + +I
Sbjct: 122 PDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLI 181
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E LFN +P + KA+WAL++ + + V
Sbjct: 182 DTYIKDPKEREYLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVA 228
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 229 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------ 282
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
K +Q+ R ++ A +E + E +P +G+N +QY++F+A+R ++G +
Sbjct: 283 -HKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKI 341
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
F+ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 342 FRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377
>gi|289177074|ref|NP_001165948.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 2 [Homo
sapiens]
Length = 423
Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats.
Identities = 99/349 (28%), Positives = 163/349 (46%), Gaps = 28/349 (8%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
G S E + +++ +L S + P++Y W+ Y A + W EV +
Sbjct: 86 QAGRSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSK 145
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Q
Sbjct: 146 DLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILI 202
Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
E VHS + +I + D + LFN +P + KA+WAL++
Sbjct: 203 ENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------------- 249
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ + V + EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 250 DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 309
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+ + K +++ R ++ +A +E + E +P G +G+N +QY++F+A
Sbjct: 310 MFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVA 362
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+R ++G +F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 363 DRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 409
>gi|328855581|gb|EGG04707.1| hypothetical protein MELLADRAFT_49061 [Melampsora larici-populina
98AG31]
Length = 385
Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats.
Identities = 93/344 (27%), Positives = 157/344 (45%), Gaps = 28/344 (8%)
Query: 11 QAGEKRVNVD-DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
G + D ++ +L L P+KY W Y A + W E+ + D+ W+
Sbjct: 41 FVGNPDITCDAEEPLLKEDGHRFVLFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWE 100
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
N L DDE+ IK L FFA+S+ +V N++ + E R + Q E +HS
Sbjct: 101 --NRLNDDEKHFIKHVLAFFAASDGIVNENLIERFSGEVQAAEARCFYGFQIMMENIHSE 158
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
+ +I + + E LF+ +P I KA+WAL++ D F
Sbjct: 159 VYSLLIDTYVREPIERSHLFDAIDTIPCIRKKADWALKWI------------SDKQSTFG 206
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ L F V EG++F FA I L + M G+ + I RDE LH +F + + ++
Sbjct: 207 ERLIAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLE 265
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ + ++ +A +E + + +P +G+NA QY++F+A+R
Sbjct: 266 R-------RPHPDTVQAIISQAVEIEKEFLSDALPCKLIGMNADLMCQYIEFVADRLLVA 318
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+G + + ENPF +M E+I L + NFFE RV++Y + +
Sbjct: 319 LGNDKFYN-AENPFDFM-EMISLSGKTNFFEKRVSDYAKAGVMT 360
>gi|301772278|ref|XP_002921557.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Ailuropoda melanoleuca]
Length = 393
Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats.
Identities = 94/337 (27%), Positives = 157/337 (46%), Gaps = 28/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L
Sbjct: 69 PSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKP 125
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I
Sbjct: 126 EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLID 185
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LFN +P + KA+WAL++ + + V +
Sbjct: 186 TYIKDSKEREFLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVAF 232
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 233 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------- 285
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
K +Q+ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F
Sbjct: 286 HKPSEQRVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVF 345
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 346 RV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 380
>gi|71043760|ref|NP_001020911.1| ribonucleoside-diphosphate reductase subunit M2 [Rattus norvegicus]
gi|77416595|sp|Q4KLN6|RIR2_RAT RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
AltName: Full=Ribonucleotide reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|68533806|gb|AAH99082.1| Ribonucleotide reductase M2 [Rattus norvegicus]
gi|149051013|gb|EDM03186.1| rCG61374 [Rattus norvegicus]
Length = 390
Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats.
Identities = 91/338 (26%), Positives = 157/338 (46%), Gaps = 28/338 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ +++++ +L + P++Y W+ Y A + W EV + D+ W+ L
Sbjct: 65 KPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALK 121
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
DER I L FFA+S+ +V N+V + + E R + Q E +HS + +I
Sbjct: 122 PDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLI 181
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E LFN +P + KA+WAL++ + + V
Sbjct: 182 DTYIKDSKEREYLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVA 228
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 229 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------ 282
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
K +Q+ + ++ + +E + E +P +G+N +QY++F+A+R ++G +
Sbjct: 283 -HKPSEQRVKEIITNSVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKI 341
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
FK ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 342 FKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377
>gi|149728153|ref|XP_001502384.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit
M2 (Ribonucleotide reductase small subunit)
(Ribonucleotide reductase small chain) [Equus caballus]
Length = 425
Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats.
Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 28/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+V+D+ +L + P++Y W+ Y A + W EV + D+ W+ L
Sbjct: 101 PSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALKP 157
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I
Sbjct: 158 EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLID 217
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LFN +P + KA+WAL++ + + V +
Sbjct: 218 TYIKDSKEREFLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVAF 264
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 265 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------- 317
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R ++G +F
Sbjct: 318 HKPSEQRVKEIIINAVRIEQEFLTEALPVRLIGMNCALMKQYIEFVADRLLLELGFNKVF 377
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 378 RV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 412
>gi|312381384|gb|EFR27142.1| hypothetical protein AND_06323 [Anopheles darlingi]
Length = 390
Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats.
Identities = 91/349 (26%), Positives = 161/349 (46%), Gaps = 29/349 (8%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+T LS ++ E+ + + +L + P++Y W+ Y A + W EV +
Sbjct: 54 STALSEVE-PEQPFDPSIEPLLMDNPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSK 112
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ W + L ER I L FFA+S+ +V N+V + + E R + Q
Sbjct: 113 DMKDW---DSLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAM 169
Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
E VHS + +I + D E LFN +P + KA+WA+ + +
Sbjct: 170 ENVHSEMYSLLIDTYIRDPKERDFLFNAIETLPCVKRKADWAMNWISS------------ 217
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ + V + EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 218 -KKANYGERIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 276
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+ + K +++ ++ +A ++E + + +P +G+N QY++F+A
Sbjct: 277 MFKYLVQ-------KPSRKRVTDIIRDAVMIEQEFLTKALPVDMLGMNCELMSQYIEFVA 329
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+R ++G E ++ T+NPF +M E I L+ + NFFE +V EYQ+ +
Sbjct: 330 DRLLVELGCEKVYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 376
>gi|296421312|ref|XP_002840209.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636423|emb|CAZ84400.1| unnamed protein product [Tuber melanosporum]
Length = 397
Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats.
Identities = 100/332 (30%), Positives = 159/332 (47%), Gaps = 27/332 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
D+ +L L P+KY W+ Y A + W+ E+ + D+ W + L DDER
Sbjct: 66 DEPILTENKHRFVLFPIKYHEIWQMYKKAEASFWVAEEIDLSKDMHDW--SDRLNDDERY 123
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+V + PE R + Q E VHS T+ +I +
Sbjct: 124 FISHVLAFFAASDGIVNENLVQRFSNEVQIPEARCFYGFQIMMENVHSETYSLLIDTYIK 183
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D + LF+ +P I KA+WA+++ + D + F Q L F V E
Sbjct: 184 DPKQRTYLFDAIDTIPCIKKKADWAIRWIE------------DRNSTFAQRLVAFAAV-E 230
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G++ + I RDE LH +F + N + +
Sbjct: 231 GIFFSGSFASIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLFNHLNN-------RPS 283
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
QQ + ++ EA +E + E +P +G+N+ +QY++F+A+R +G + T
Sbjct: 284 QQAVQDIIVEAVGIEQEFLTEALPCALLGMNSKLMKQYIEFVADRLLLSLGNPKFYNAT- 342
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV +YQ+ +
Sbjct: 343 NPFDFM-ESISLAGKTNFFEKRVGDYQKAGVM 373
>gi|74207686|dbj|BAE40088.1| unnamed protein product [Mus musculus]
Length = 390
Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats.
Identities = 93/338 (27%), Positives = 156/338 (46%), Gaps = 28/338 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+V+D+ +L + P++Y W+ Y A + W EV + D+ W+ L
Sbjct: 65 NPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALK 121
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
DER I L FFA+S+ +V N+V + + E R + Q E +HS + +I
Sbjct: 122 PDERHFISHALAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLI 181
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E LFN +P + KA+WAL++ + + +
Sbjct: 182 DTYIKDPKEREYLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVMA 228
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 229 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------ 282
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
K +Q+ R ++ A +E + E +P +G+N +QY++F+A+R ++G +
Sbjct: 283 -HKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKI 341
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
F+ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 342 FRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377
>gi|164659270|ref|XP_001730759.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966]
gi|159104657|gb|EDP43545.1| hypothetical protein MGL_1758 [Malassezia globosa CBS 7966]
Length = 397
Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats.
Identities = 95/345 (27%), Positives = 156/345 (45%), Gaps = 27/345 (7%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
GE + +++ +L L P++Y W+ Y A + W E+ + DL W
Sbjct: 60 FVGEVDLPEEEEPILKENKGRFVLFPIRYHEIWQMYKKAEASFWTAEEIDLSKDLYDWD- 118
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
N +TD ER + L FFA+S+ +V N+V + E R + Q E +HS T
Sbjct: 119 -NRMTDPERHFVSHVLAFFAASDGIVNENLVERFSAEVQATEARCFYGFQIMMENIHSET 177
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I + + LFN VP + KA+WAL++ D F +
Sbjct: 178 YSLLIDTYIREPERRDFLFNAIETVPVVKQKADWALRWI------------SDHRASFSE 225
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
L F V EG++F FA I L + M G++ + I RDE LH +F + + +K
Sbjct: 226 RLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLFSHLKK 284
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
+ ++ EA +E + + +P +G+NA QY++F+A+R +
Sbjct: 285 -------RAHPDTVNRIITEAVDIEQDFLTDALPVSLIGMNARLMCQYIEFVADRLLVAL 337
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
G + + NPF +M E I L+ + NFFE RV +Y + + D
Sbjct: 338 GNPKHYN-STNPFDFM-ENISLQGKSNFFERRVGDYAKAGVARAD 380
>gi|320164906|gb|EFW41805.1| ribonucleotide reductase m2 polypeptide [Capsaspora owczarzaki ATCC
30864]
Length = 352
Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats.
Identities = 96/349 (27%), Positives = 154/349 (44%), Gaps = 29/349 (8%)
Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
T + G ++ + D+ +L L P++Y W+ Y A + W EV + D
Sbjct: 17 TAEEALVNGLSKLEL-DEPLLKPNPHRFVLFPIQYHDVWKMYKKAEASFWTAEEVDLSKD 75
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
L W + L +ER I L FFA+S+ +V N++L + PE R + Q E
Sbjct: 76 LNDW---DKLKSEERHFISHVLAFFAASDGIVNENLLLRFSTEVQIPEVRSFYCFQIAIE 132
Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
+HS + +I D E LFN +P + KA WAL++ D
Sbjct: 133 NIHSEMYSLLIDMYIKDSAEREKLFNAIETLPCVAKKAQWALRWI------------SDR 180
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
F L F V EG++F FA I L + M G+ + I RDE LH +F +
Sbjct: 181 RSTFAHRLIAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACML 239
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
+ + ++ +A +E + + +P +G+N + Y++F+A+
Sbjct: 240 FGLLNNRPSN-------ADVLAIIKDAVAIEQEFLTDALPVALIGMNGGLMKTYIEFVAD 292
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
R +G E +K ENPF +M +I L+ + NFFE RV EYQ+ +
Sbjct: 293 RLLVALGQEKHYKV-ENPFDFMD-LISLQGKTNFFERRVGEYQKPGVMS 339
>gi|115466138|ref|NP_001056668.1| Os06g0127900 [Oryza sativa Japonica Group]
gi|55296211|dbj|BAD67929.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
gi|113594708|dbj|BAF18582.1| Os06g0127900 [Oryza sativa Japonica Group]
gi|186920368|gb|ACC95437.1| ribonucleotide diphosphate reductase small subunit 2 [Oryza sativa
Japonica Group]
gi|215706414|dbj|BAG93270.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222634884|gb|EEE65016.1| hypothetical protein OsJ_19968 [Oryza sativa Japonica Group]
Length = 345
Score = 272 bits (694), Expect = 7e-71, Method: Composition-based stats.
Identities = 87/333 (26%), Positives = 155/333 (46%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L SD + P++Y WE Y A + W EV + D W L+ DER
Sbjct: 20 EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 77
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ L FFA+S+ +V N+ + E R + Q E +HS + ++ +
Sbjct: 78 FVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 137
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D+ E LF VP++ KA+WA+++ D + F + L + E
Sbjct: 138 DDVEKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVE 183
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 184 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLD------- 236
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + + ++ +A +E + + +P VG+N QY++F+A+R +G + ++
Sbjct: 237 ESRVQEIVADAVDIEREFVCDALPVALVGMNGELMSQYIEFVADRLLMALGCKKMYNVA- 295
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV +YQ+ + +
Sbjct: 296 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 327
>gi|73979721|ref|XP_540076.2| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain
(Ribonucleotide reductase small chain) isoform 1 [Canis
familiaris]
Length = 394
Score = 272 bits (694), Expect = 8e-71, Method: Composition-based stats.
Identities = 91/337 (27%), Positives = 156/337 (46%), Gaps = 28/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ +++ +L + P++Y W+ Y A + W EV + D+ W+S L
Sbjct: 70 PSAEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKP 126
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I
Sbjct: 127 EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLID 186
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LFN +P + KA+WAL++ + + V +
Sbjct: 187 TYIKDSKEREFLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVAF 233
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 234 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------- 286
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R ++G +F
Sbjct: 287 HKPSEQRVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVF 346
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 347 RV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 381
>gi|225451453|ref|XP_002269951.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|147804660|emb|CAN64484.1| hypothetical protein VITISV_012640 [Vitis vinifera]
Length = 329
Score = 272 bits (694), Expect = 8e-71, Method: Composition-based stats.
Identities = 88/333 (26%), Positives = 156/333 (46%), Gaps = 29/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P++Y WE Y A + W EV + D W+ LT DE+
Sbjct: 6 EEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWE---NLTSDEKH 62
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + + E R + Q E +HS + ++ S
Sbjct: 63 FISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIK 122
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF+ +P + KA WAL++ D + F + L + E
Sbjct: 123 DPKEKNRLFHAIDTIPCVAKKAQWALRWI-------------DGSETFAERLLA-FACVE 168
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 169 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLS------- 221
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+++ + ++ ++ +E + + +P VG+N+ QY++F+A+R +G ++ +
Sbjct: 222 EERVKAIVADSVDIEREFVCDALPCALVGMNSALMSQYIEFVADRLLGALGYGKMYNVS- 280
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV EYQ+ + +
Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312
>gi|218197485|gb|EEC79912.1| hypothetical protein OsI_21460 [Oryza sativa Indica Group]
Length = 345
Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats.
Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L SD + P++Y WE Y A + W EV + D W L+ DER
Sbjct: 20 EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 77
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ L FFA+S+ +V N+ + E R + Q E +HS + ++ +
Sbjct: 78 FVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 137
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF VP++ KA+WA+++ D + F + L + E
Sbjct: 138 DGAEKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVE 183
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 184 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLD------- 236
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + + ++ +A +E + + +P VG+N QY++F+A+R +G + ++
Sbjct: 237 ESRVQEIVADAVDIEREFVCDALPVALVGMNGELMSQYIEFVADRLLMALGCKKMYNVA- 295
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV +YQ+ + +
Sbjct: 296 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 327
>gi|170089003|ref|XP_001875724.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82]
gi|164648984|gb|EDR13226.1| ribonucleotide reductase, beta subunit [Laccaria bicolor S238N-H82]
Length = 422
Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats.
Identities = 92/340 (27%), Positives = 156/340 (45%), Gaps = 27/340 (7%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
GE + ++ +L L P++Y W+ Y A + W E+ + DL W
Sbjct: 75 FVGEVDLPESEEPLLKESKRRFVLFPIQYNEIWQMYKKAEASFWTAEEMDLSKDLHDWN- 133
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
N + D+ER I L FFA+S+ +V N++ + E R + Q E +HS T
Sbjct: 134 -NRMNDNERHFISHVLAFFAASDGIVNENLLERFSNEVQAAEARCFYGFQIMMENIHSET 192
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I S D + LF+ +P I KA WAL++ D + F +
Sbjct: 193 YSLLIDSYIKDPAQREYLFDAIETIPCIKRKAEWALKWI------------SDQESTFAE 240
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
L F V EG++F FA I + + M G+ + I RDE +H +F + + +K
Sbjct: 241 RLVAFAAV-EGIFFSGSFASIFWMKKRGLMPGLTFSNELISRDEGMHTDFACLLFSHLKR 299
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
+ + + ++ EA +E + + +P +G+NA QY++F+A+R +
Sbjct: 300 -------RPHPEVVKHIIVEAVKIEQEFLTDALPVKLIGMNADLMCQYIEFVADRLLVSL 352
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
G E + NPF +M +I L+ + NFFE RV++Y +
Sbjct: 353 GNEKHYN-KTNPFDFMD-MISLQGKTNFFEKRVSDYSKAG 390
>gi|76630259|ref|XP_584910.2| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
taurus]
gi|297480610|ref|XP_002691527.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
taurus]
gi|296482361|gb|DAA24476.1| ribonucleotide reductase M2 polypeptide isoform 1 [Bos taurus]
Length = 389
Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats.
Identities = 92/337 (27%), Positives = 155/337 (45%), Gaps = 28/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+V+D+ +L + P++Y W+ Y A + W EV + D+ W+ L
Sbjct: 65 PSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWE---ALKS 121
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I
Sbjct: 122 EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLID 181
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LFN +P + KA+WAL++ + V +
Sbjct: 182 TYIKDSKEREFLFNAIETMPCVKKKADWALRWIG-------------DKAATYGERVVAF 228
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 229 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL------- 281
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R ++G +F
Sbjct: 282 HKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVF 341
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 342 RV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 376
>gi|50311465|ref|XP_455757.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644893|emb|CAG98465.1| KLLA0F15103p [Kluyveromyces lactis]
Length = 401
Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats.
Identities = 102/333 (30%), Positives = 156/333 (46%), Gaps = 27/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +L L P+KY WE Y A + W E+ + DL W N + ++ER
Sbjct: 74 KDEPLLVENKRRFVLFPIKYHEIWEAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENER 131
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 132 FFISRILAFFAASDGIVNENLVENFSAEVQAPEAKCFYGFQIMMENIHSETYSLLIDTYI 191
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WA+++ Q D D F + L F V
Sbjct: 192 KDPKESEFLFNAIETIPQIKEKAEWAIRWIQ------------DDDALFGERLVAFAAV- 238
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + +K +
Sbjct: 239 EGVFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPNP----- 293
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ ++ EA +E Y + +P +G+NA QY++F+A+R +G + F T
Sbjct: 294 --EIVEKIITEAVEIEKRYFMDALPVSLLGMNADLMNQYVEFVADRLLVALGNKKYFNVT 351
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV++YQ+ +
Sbjct: 352 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVI 382
>gi|297805560|ref|XP_002870664.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp.
lyrata]
gi|297316500|gb|EFH46923.1| ribonucleoside-diphosphate reductase [Arabidopsis lyrata subsp.
lyrata]
Length = 333
Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats.
Identities = 89/333 (26%), Positives = 156/333 (46%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P++Y WE Y A + W EV + D W+ N L++DER
Sbjct: 6 EEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLSNDERH 63
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFA+S+ +V N+ + E R + Q E +HS + ++ +
Sbjct: 64 FIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIK 123
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF +P +T KA WA+++ S + V + E
Sbjct: 124 DNKERDHLFRAIETIPCVTKKAEWAMKWINGSQS--------------FAERIVAFACVE 169
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 170 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLRTKLD------- 222
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+++ ++++ +A +E + + +P VG+N QY++F+A+R +G ++ +
Sbjct: 223 EERLKSIVCDAVEIEREFVCDALPCALVGMNRELMSQYIEFVADRLLTALGCGKVYGVS- 281
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV EYQ+ + +
Sbjct: 282 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 313
>gi|316971821|gb|EFV55552.1| ribonucleotide reductase R2 subunit [Trichinella spiralis]
Length = 366
Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats.
Identities = 98/347 (28%), Positives = 163/347 (46%), Gaps = 28/347 (8%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
+P++ ++ ++ +L + LLPL+Y W Y A + W EV ++ D
Sbjct: 33 TPMEQDAAAIDNCEEPLLRSNPKRFVLLPLEYPDIWAMYKKAEASFWTVEEVDLRKDAND 92
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
W L DE+ I L FFA+S+ +V N+V + + E R + Q E VH
Sbjct: 93 W---AKLNKDEKHFISHVLAFFAASDGIVFENLVERFSQEIQVTEARFFYGFQIAIENVH 149
Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
S + +I + D E LFN +P + KA+WAL++ D
Sbjct: 150 SEMYSLLIDTYIRDPVERDFLFNAIETIPCVKKKADWALRWI------------GDRQSP 197
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
F + L F V EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 198 FCERLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSH 256
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+K K + + R ++ EA +E + + +P +G+N QY++++A+R
Sbjct: 257 LKK-------KPTEDRVRQIITEAVSIEQEFLTDALPVRLIGMNCVLMSQYIEYVADRLL 309
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
++G ++ +ENPF +M E+I L+ + NFFE RV EYQ+ +
Sbjct: 310 VELGCSKVYN-SENPFDFM-EMISLEGKTNFFEKRVGEYQKAGVMAD 354
>gi|1710401|sp|P49730|RIR2_TOBAC RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleoside-diphosphate reductase R2
subunit; AltName: Full=Ribonucleotide reductase small
subunit
gi|1044912|emb|CAA63194.1| ribonucleotide reductase R2 [Nicotiana tabacum]
Length = 329
Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats.
Identities = 89/333 (26%), Positives = 155/333 (46%), Gaps = 29/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L + D + P++Y WE Y A + W EV + D W++ LT ER
Sbjct: 6 EEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWET---LTPGERH 62
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + + E R + Q E +HS + ++ S
Sbjct: 63 FITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIK 122
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF P + KA WAL++ D + F + L + E
Sbjct: 123 DSDEKSRLFRAVETNPCVEKKAKWALRWI-------------DGSETFAERLVA-FACVE 168
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKL-------T 221
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+++ + ++ +A +E + + +P VG+N +Y++F+A+R +G + L+ +
Sbjct: 222 EERVKGIVADAVEIEREFVCDALPCALVGMNGDLMSKYIEFVADRLLDALGYDKLYN-AQ 280
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV EYQ+ + +
Sbjct: 281 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312
>gi|148230557|ref|NP_001080772.1| ribonucleotide reductase M2 polypeptide [Xenopus laevis]
gi|28839018|gb|AAH47975.1| Rrm2-prov protein [Xenopus laevis]
Length = 386
Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats.
Identities = 95/346 (27%), Positives = 156/346 (45%), Gaps = 28/346 (8%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
+P K D+ +L + P++Y W+ Y A + W EV + D+
Sbjct: 53 TPTSKVPKNPRFTDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDIQH 112
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
W+S L DER I L FFA+S+ +V N+V + + E R + Q E +H
Sbjct: 113 WES---LKTDERYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169
Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
S + +I + D E LFN +P + KA+WAL++ Q
Sbjct: 170 SEMYSLLIDTYIKDPKERGFLFNAIETLPCVKKKADWALRWI-------------SDKQA 216
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ V + EG++F FA I L + M G+ + I RDE LH +F +
Sbjct: 217 TYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFRH 276
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ K +++ ++ A +E + E +P +G+N +QY++F+A+R
Sbjct: 277 LV-------HKPSEERVVQLITNAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLL 329
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++G +FK + NPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 330 LELGFNKVFKAS-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 373
>gi|77748199|gb|AAI06683.1| MGC78958 protein [Xenopus laevis]
Length = 406
Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats.
Identities = 96/334 (28%), Positives = 161/334 (48%), Gaps = 28/334 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
+ D+ +L +LP++Y W+ Y A + W EV + DL W++ L +E
Sbjct: 84 IQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---LKPEE 140
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 141 RYFISYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLLIDTY 200
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D E LFN +P + KA W+L++ D + + + L F V
Sbjct: 201 IKDPKEREFLFNAIETLPCVKKKAEWSLRWI------------SDREAPYCERLVAFAAV 248
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + M G+ + I RDE LH +F + + K
Sbjct: 249 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFKHVV-------HK 300
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+Q+ R ++ +A +E + E +P +G+N +QY++F+A+R ++G + +FK
Sbjct: 301 PSEQRVREIIIDAVKIEQEFLIEALPVELIGMNCTLMKQYIEFVADRLLLELGFKKIFK- 359
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ENPF +M E I L+ + NFFE +V EYQ+ +
Sbjct: 360 SENPFDFM-ENISLEGKTNFFEKKVGEYQKMGVM 392
>gi|331245491|ref|XP_003335382.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis
f. sp. tritici CRL 75-36-700-3]
gi|309314372|gb|EFP90963.1| ribonucleoside-diphosphate reductase subunit M2 [Puccinia graminis
f. sp. tritici CRL 75-36-700-3]
Length = 380
Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats.
Identities = 92/334 (27%), Positives = 150/334 (44%), Gaps = 27/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D + +L L P+KY W Y A + W E+ + D+ W N L DE+
Sbjct: 46 DQEPLLKEDGHRFVLFPIKYHEIWASYKRAEASFWTAEEIDLSKDMHDWD--NKLNADEK 103
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
IK L FFA+S+ +V N++ + E R + Q E +HS + +I +
Sbjct: 104 HFIKHVLAFFAASDGIVNENLIERFSGEVQVAEARCFYGFQIMMENIHSEVYSLLIDTYV 163
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
+ E LF+ +P I KA+WAL + D F + L F V
Sbjct: 164 REPTERAHLFDAIDTIPCIRKKADWALTWI------------SDKKSTFGERLIAFAAV- 210
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + ++ +
Sbjct: 211 EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFTHLER-------RP 263
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ ++ +A +E + + +P +G+NA QY++F+A+R +G E + T
Sbjct: 264 HPDTVQAIIAQAVEIEKEFLSDALPCKLIGMNADLMCQYIEFVADRLLVALGNEKFYNAT 323
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M E+I L + NFFE RV++Y + +
Sbjct: 324 -NPFDFM-EMISLSGKTNFFEKRVSDYAKAGVMT 355
>gi|168031987|ref|XP_001768501.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680214|gb|EDQ66652.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 331
Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats.
Identities = 90/334 (26%), Positives = 152/334 (45%), Gaps = 29/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ +L + + P+KY WE Y A + W EV + D W++ LTDDER
Sbjct: 6 QKEPILVENPNRFTMFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWET---LTDDER 62
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I L FFA+S+ +V N+ + + + PE R + Q E +HS + ++ +
Sbjct: 63 HFISHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYI 122
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D+ E LFN +P + KA+WAL++ + S + + +
Sbjct: 123 KDQAEKSRLFNAIETIPCVARKADWALKWIDSAGS--------------FAERILAFACV 168
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F F I L + M G+ + I RDE LH +F + + +
Sbjct: 169 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLINKLS------ 222
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+++ ++ EA +E + E + VG+N +Y+ F+A+R +G +
Sbjct: 223 -EERVYEIVCEAVEIEREFVCEALSCDLVGMNKILMSEYIDFVADRLLVSLGYRKKYN-A 280
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV EYQ+ + +
Sbjct: 281 LNPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 313
>gi|929959|gb|AAA74020.1| ribonuleotide reductase small subunit [Urechis caupo]
Length = 399
Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats.
Identities = 88/334 (26%), Positives = 156/334 (46%), Gaps = 28/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+++ +L + P++Y W+ Y A + W EV + D++ W+ L +E+
Sbjct: 75 EEEPLLRDNPRRFVVFPIQYNDIWQMYKKAEASFWTAEEVDLSKDISDWE---KLKSEEK 131
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
+ L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 132 HFVSHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGYQIAVENIHSEMYSLLIDTYV 191
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P + KA+WAL++ +Q + V +
Sbjct: 192 KDPTERDFLFNAIETMPCVKEKADWALRWIN-------------DEQSSFGERVVAFAAV 238
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + + +K K
Sbjct: 239 EGIFFSGSFASIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFSHLKN-------KP 291
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
Q++ ++ +A +E ++ E +P +G+N QY++F+A+R ++G ++
Sbjct: 292 SQERVYDIIRDAVRIEQSFLTEALPVNLIGMNCKLMAQYIEFVADRLLLELGCPKIWNV- 350
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M I L+ + NFFE RV EYQ+ +
Sbjct: 351 ENPFDFMD-NISLEGKTNFFEKRVGEYQKMGVMS 383
>gi|149248382|ref|XP_001528578.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448532|gb|EDK42920.1| ribonucleoside-diphosphate reductase small chain [Lodderomyces
elongisporus NRRL YB-4239]
Length = 422
Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats.
Identities = 93/333 (27%), Positives = 155/333 (46%), Gaps = 27/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +L + P++Y W+ Y A + W E+ + D+ WK N L ++ER
Sbjct: 97 KDEPLLKENKRRYVMFPIRYHEIWQMYKKAEASFWTAEEIDLGKDMHDWK--NKLNENER 154
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 155 FFISRILAFFAASDGIVNENLVENFSAEVQIPEAKSFYGFQIMMENIHSETYSLLIDTYI 214
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA+WA+++ D + V +
Sbjct: 215 KDPKEADFLFNAIDNIPQIKKKADWAIRWIN-------------DDNALFAERLVAFAAV 261
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + + ++
Sbjct: 262 EGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHLENRPDP----- 316
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ ++ EA +E + + +P +G+N QY++F+A+R +G E ++K T
Sbjct: 317 --KIVEKIISEAVEIEKEFFTDALPVSLLGMNCKLMCQYVEFVADRLLVALGNEKIYKVT 374
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV++YQ+ +
Sbjct: 375 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 405
>gi|118089007|ref|XP_419948.2| PREDICTED: similar to small subunit ribonucleotide reductase
isoform 2 [Gallus gallus]
Length = 384
Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats.
Identities = 90/335 (26%), Positives = 156/335 (46%), Gaps = 28/335 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
+++ +L + P++Y W+ Y A + W EV + DL W+S L +E
Sbjct: 62 AEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPEE 118
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
+ I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 119 KYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTY 178
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D E LFN +P + KA+WA+++ + + V +
Sbjct: 179 IKDSKEREFLFNAIETLPCVKKKADWAIRWIG-------------DKKATYGERVVAFAA 225
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + M G+ + I RDE LH +F + + K
Sbjct: 226 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLIR-------K 278
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+++ + ++ A L+E + E +P +G+N +QY++F+A+R ++G ++K
Sbjct: 279 PSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFRKIYKV 338
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 339 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 371
>gi|110763195|ref|XP_397443.3| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 isoform
1 [Apis mellifera]
Length = 384
Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats.
Identities = 89/352 (25%), Positives = 158/352 (44%), Gaps = 28/352 (7%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
N + + E + N + + +L + P+++ W+ Y A + W EV +
Sbjct: 46 NTKAIQNMYLKENKFNPELEPLLKENPRRFVVFPIQWPDIWQMYKKAEASFWTVEEVDLS 105
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D+ W N LT E+ I L FFA+S+ +V N+V + + E R + Q
Sbjct: 106 KDVFDW---NNLTASEKHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQVA 162
Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
E VHS + +I + D E LFN +P + KA+WAL +
Sbjct: 163 MENVHSEMYSLLIDTYIADAKERDFLFNAIENLPCVAKKAHWALNWIN------------ 210
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ + V + EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 211 -HESATFPERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 269
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+ I + ++ +++ +A +E + + +P +G+N QY++F+
Sbjct: 270 LMFKHIVQKPSC-------ERVTSIIKDAVKIEQEFLTDALPVEMIGMNCKLMCQYIEFV 322
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
A+R ++G + ++ +ENPF +M I L+ + NFFE +V EYQ+ ++
Sbjct: 323 ADRLLVELGCKKIY-MSENPFDFMEH-ISLEGKTNFFEKKVGEYQKWGVMQD 372
>gi|15232077|ref|NP_189342.1| TSO2 (TSO meaning 'ugly' in Chinese); oxidoreductase/
ribonucleoside-diphosphate reductase/ transition metal
ion binding [Arabidopsis thaliana]
gi|75273949|sp|Q9LSD0|RIR2C_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain C;
AltName: Full=Ribonucleoside-diphosphate reductase TSO2
subunit; AltName: Full=Ribonucleotide reductase small
subunit C
gi|9279629|dbj|BAB01087.1| ribonucleotide reductase [Arabidopsis thaliana]
gi|17380726|gb|AAL36193.1| putative ribonucleotide reductase small subunit [Arabidopsis
thaliana]
gi|21436297|gb|AAM51287.1| putative ribonucleotide reductase small subunit [Arabidopsis
thaliana]
gi|332643740|gb|AEE77261.1| Ribonucleoside-diphosphate reductase small chain C [Arabidopsis
thaliana]
Length = 332
Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats.
Identities = 89/333 (26%), Positives = 151/333 (45%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P+ Y WE Y A + W EV + D W+ N L D ER
Sbjct: 6 EEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLNDGERH 63
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFA+S+ +V N+ + E R + Q E +HS + ++ +
Sbjct: 64 FIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIK 123
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF +P + KA WA+++ + + + + E
Sbjct: 124 DNKERDHLFRAIETIPCVAKKAQWAMKWIDG--------------SQTFAERIIAFACVE 169
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + L TK
Sbjct: 170 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYT-------LLKTKLS 222
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+++ ++++ +A +E + + +P VG+N QY++F+A+R +G ++ T
Sbjct: 223 EERVKSIVCDAVEIEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVT- 281
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV +YQ+ + +
Sbjct: 282 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 313
>gi|320580024|gb|EFW94247.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
complex [Pichia angusta DL-1]
Length = 408
Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats.
Identities = 97/333 (29%), Positives = 152/333 (45%), Gaps = 27/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +L L P+KY W+ Y A + W E+ + DL W N L D+ER
Sbjct: 80 KDEPLLVENKRRFVLFPIKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDNER 137
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
+ R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 138 YFVSRVLAFFAASDGIVNENLVENFSAEVQVPEAKCFYGFQIMMENIHSETYSLLIDTYV 197
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WA+++ D + F + L F V
Sbjct: 198 KDPKEAEFLFNAIETIPCIKEKAEWAMRWIN------------DEEALFAERLVAFAAV- 244
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 245 EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHLNN-------TP 297
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ EA +E Y + +P +G+N QY++F+A+R +G + + T
Sbjct: 298 NNDIVLKIITEAVDIEKRYFTDALPVNLLGMNCSLMCQYVEFVADRLLLSLGCKKHYNAT 357
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV++YQ+ +
Sbjct: 358 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 388
>gi|50286273|ref|XP_445565.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524870|emb|CAG58476.1| unnamed protein product [Candida glabrata]
Length = 400
Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats.
Identities = 99/334 (29%), Positives = 155/334 (46%), Gaps = 27/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +LN D L P+KY W+ Y A + W E+ + DL W N L ++ER
Sbjct: 74 KDEPLLNDDPDRLTLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN--NRLNENER 131
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V PE + + Q E +HS T+ +I +
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEAVIPEAKAFYGFQIMIENIHSETYSLLIDTYI 191
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WAL++ +++ F + L +
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWI------------ANSEALFAERLVA-FAAI 238
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + + K
Sbjct: 239 EGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFAHLN-------HKP 291
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ ++ EA +E Y + +P +G+NA QY++F+A+R G + ++
Sbjct: 292 DPEVVERIVTEAVEIEQRYFLDALPVALLGMNAQLMNQYVEFVADRLLVAFGNKKVYNV- 350
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L + NFFE RV++YQ+ +
Sbjct: 351 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383
>gi|148232385|ref|NP_001085389.1| ribonucleotide reductase M2, gene 1 [Xenopus laevis]
gi|48735122|gb|AAH72071.1| MGC78958 protein [Xenopus laevis]
Length = 406
Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats.
Identities = 96/334 (28%), Positives = 161/334 (48%), Gaps = 28/334 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
+ D+ +L +LP++Y W+ Y A + W EV + DL W++ L +E
Sbjct: 84 IQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLQHWET---LKPEE 140
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 141 RYFIAYVLAFFAASDGIVNENLVERFSQEVQVTEVRCFYGFQIAMENIHSEMYSLLIDTY 200
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D E LFN +P + KA W+L++ D + + + L F V
Sbjct: 201 IKDPKEREFLFNAIETLPCVKKKAEWSLRWI------------SDREAPYCERLVAFAAV 248
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + M G+ + I RDE LH +F + + K
Sbjct: 249 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFKHVV-------HK 300
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+Q+ R ++ +A +E + E +P +G+N +QY++F+A+R ++G + +FK
Sbjct: 301 PSEQRVREIIIDAVKIEQEFLTEALPVELIGMNCTLMKQYIEFVADRLLLELGFKKIFK- 359
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ENPF +M E I L+ + NFFE +V EYQ+ +
Sbjct: 360 SENPFDFM-ENISLEGKTNFFEKKVGEYQKMGVM 392
>gi|75224904|sp|Q6Y657|RIR2B_ARATH RecName: Full=Putative ribonucleoside-diphosphate reductase small
chain B; AltName: Full=Ribonucleoside-diphosphate
reductase R2B subunit; AltName: Full=Ribonucleotide
reductase small subunit B
gi|37729626|gb|AAO62422.1| ribonucleotide reductase small subunit [Arabidopsis thaliana]
Length = 333
Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats.
Identities = 90/333 (27%), Positives = 154/333 (46%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P++Y WE Y A + W EV + D W+ N LT+DER
Sbjct: 6 EEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTNDERH 63
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFA+S+ +V N+ + E R + Q E +HS + ++ +
Sbjct: 64 FIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIK 123
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF +P +T KA WA+++ S + V + E
Sbjct: 124 DNKERDHLFRAIETIPCVTKKAEWAMKWINGSQS--------------FAERIVAFACVE 169
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 170 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLRTKLD------- 222
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + + ++ +A +E + + +P VG+N QY++F+A+R +G ++ +
Sbjct: 223 EDRLKAIVCDAVEIEREFVCDALPCALVGMNRELMSQYIEFVADRLLAALGCAKVYGVS- 281
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV EYQ+ + +
Sbjct: 282 NPFDWM-ELISLQGKTNFFEKRVGEYQKASIMS 313
>gi|326437649|gb|EGD83219.1| ribonucleotide reductase M2 B [Salpingoeca sp. ATCC 50818]
Length = 408
Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats.
Identities = 90/337 (26%), Positives = 160/337 (47%), Gaps = 28/337 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ + +L +LP+++ W Y A + W EV + DL W+ GL
Sbjct: 80 DEEIAAEPLLRENPSRFVILPIQHRQVWSMYKKAVASFWTAEEVDLSRDLDHWR---GLK 136
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
D E+ IK L FFA+S+ +V N+V + PE R + Q E +HS + +I
Sbjct: 137 DTEQHFIKHVLAFFAASDGIVNENLVERFMCEVQLPEARCFYGFQIMIENIHSEMYSLLI 196
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E LFN +P++ KA WA+++ D + + V
Sbjct: 197 DTYINDPQEKHMLFNAVETLPAVKRKAEWAMRWI-------------DHKRASFAERVVA 243
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++F FA I L + M G+ + + I RDE LH +F + + + + P
Sbjct: 244 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTQSNELISRDEGLHCDFACLMFSMLHKKPP-- 301
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+++ ++ +A +E + E +P +G+N+ +Y++F+++R +G + +
Sbjct: 302 -----KERVIGIIMDAVEIEQEFLTEALPVSLLGMNSTLMREYIEFVSDRLLVSLGYDKV 356
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ T NPFP+M E I ++ + NFFE RV+EYQ+ +
Sbjct: 357 YNAT-NPFPFM-ENISIEGKTNFFERRVSEYQKSGVM 391
>gi|297818266|ref|XP_002877016.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp.
lyrata]
gi|297322854|gb|EFH53275.1| hypothetical protein ARALYDRAFT_484491 [Arabidopsis lyrata subsp.
lyrata]
Length = 329
Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats.
Identities = 89/333 (26%), Positives = 151/333 (45%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P+ Y WE Y A + W EV + D W+ N L D ER
Sbjct: 3 EEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NNLNDGERH 60
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFA+S+ +V N+ + E R + Q E +HS + ++ +
Sbjct: 61 FIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIK 120
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF +P + KA WA+++ + + + + E
Sbjct: 121 DNKERDHLFRAIETIPCVAKKAQWAMKWIDG--------------SQTFAERIIAFACVE 166
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + L TK
Sbjct: 167 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYT-------LLKTKLS 219
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+++ ++++ +A +E + + +P VG+N QY++F+A+R +G ++ T
Sbjct: 220 EERVKSIVCDAVEIEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVT- 278
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV +YQ+ + +
Sbjct: 279 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 310
>gi|68481406|ref|XP_715342.1| hypothetical protein CaO19.5801 [Candida albicans SC5314]
gi|68481537|ref|XP_715277.1| hypothetical protein CaO19.13223 [Candida albicans SC5314]
gi|46436893|gb|EAK96248.1| hypothetical protein CaO19.13223 [Candida albicans SC5314]
gi|46436961|gb|EAK96315.1| hypothetical protein CaO19.5801 [Candida albicans SC5314]
gi|238882096|gb|EEQ45734.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
albicans WO-1]
Length = 413
Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats.
Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 27/332 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L + P++Y W Y A + W E+ + DL W N L ++ER
Sbjct: 89 EEPLLVENKRRYVMFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWN--NKLNENERY 146
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I R L FFA+S+ +V N++ + PE + + Q E +HS T+ +I +
Sbjct: 147 FISRVLAFFAASDGIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIK 206
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LFN +P I KA+WA+++ Q D+ + V + E
Sbjct: 207 DPQEADYLFNAIANIPCIQKKADWAIKWIQ-------------DDEALYGERLVAFAAVE 253
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G+ + I RDE LH +F + ++ +
Sbjct: 254 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFAHLQN-------RPS 306
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ ++ EA +E Y + +P +G+N QY++F+A+R +G + ++ T
Sbjct: 307 PEIVERIITEAVDVEKEYFTDALPVSLLGMNCNLMCQYIEFVADRLLLALGNKKVYNVT- 365
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV++YQ+ +
Sbjct: 366 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 396
>gi|254572986|ref|XP_002493602.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
complex [Pichia pastoris GS115]
gi|238033401|emb|CAY71423.1| Small subunit of the ribonucleotide-diphosphate reductase (RNR)
complex [Pichia pastoris GS115]
gi|328354568|emb|CCA40965.1| ribonucleoside-diphosphate reductase subunit M2 [Pichia pastoris
CBS 7435]
Length = 400
Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats.
Identities = 97/333 (29%), Positives = 156/333 (46%), Gaps = 27/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +L L PLKY W+ Y A + W E+ + DL W N + D+E+
Sbjct: 74 KDEPLLVENKRRFVLFPLKYHDIWQMYKQAEASFWTAEEIDLGKDLHDWN--NRMNDNEK 131
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSAEVQLPEAKCFYGFQIMMENIHSETYSLLIDTYI 191
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA+WA+++ D D F + L F V
Sbjct: 192 KDPKESEFLFNAIETIPCIKEKADWAMRWI------------SDDDALFAERLVAFAAV- 238
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + + + +
Sbjct: 239 EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHLNN-------RA 291
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ ++ EA +E Y + +P +G+N QY++F+A+R +G + ++
Sbjct: 292 SEEIVEKIITEAVEIEKRYFTDALPVSLLGMNCSLMCQYVEFVADRLLVALGNKKVYNVN 351
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV++YQ+ +
Sbjct: 352 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 382
>gi|241166485|ref|XP_002409876.1| ribonucleotide reductase, beta subunit, putative [Ixodes
scapularis]
gi|215494664|gb|EEC04305.1| ribonucleotide reductase, beta subunit, putative [Ixodes
scapularis]
Length = 376
Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats.
Identities = 93/337 (27%), Positives = 153/337 (45%), Gaps = 28/337 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ D+ +L + P+ Y W Y A + W EV + DL W +GL
Sbjct: 51 ELEKQDEPLLRENPRRFVMFPIVYEDIWRMYKKAEASFWTVEEVDLGKDLPHW---DGLK 107
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+ER I L FFA+S+ +V N+V + + E R + Q E VHS + +I
Sbjct: 108 PEERHFISHILAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQMAIENVHSEMYSLLI 167
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E LFN +P I KA+WAL + + V
Sbjct: 168 DTYIKDPSERDRLFNAVETMPCIKRKADWALNWI-------------SNRSATFGERIVA 214
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 215 FAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFSHLVN----- 269
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
K Q + R ++ +A ++E + + +P +G+N ++Y++F+A+R ++G E +
Sbjct: 270 --KPSQARVRQIICDAVVIEQEFLTDALPVALIGMNCELMKRYIEFVADRLLVELGCEKV 327
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ +ENPF +M I L+ + NFFE RV EYQ+ +
Sbjct: 328 YN-SENPFDFMEH-ISLEGKTNFFEKRVGEYQKAGVM 362
>gi|302696699|ref|XP_003038028.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8]
gi|300111725|gb|EFJ03126.1| hypothetical protein SCHCODRAFT_12788 [Schizophyllum commune H4-8]
Length = 377
Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats.
Identities = 93/335 (27%), Positives = 153/335 (45%), Gaps = 27/335 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ +D+ +L L P++Y W Y A + W E+ + D+ W L D
Sbjct: 57 IRAEDEPLLRESQRRFVLFPIQYDDIWAMYKQAQASFWTSEEITLAYDMRDW--TERLDD 114
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+ER IK L FFA+S+ +V N+V + E R + Q E +HS T+ +I
Sbjct: 115 NERNFIKHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQIMMENIHSETYSLLID 174
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LF +P I KA+WAL++ D F + L F
Sbjct: 175 TYIKDPQERDHLFAAIETIPCIKRKADWALRWI------------SDKSSTFAERLVAFA 222
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
V EG++F FA I L + M G+ + I RDE +H F + + ++
Sbjct: 223 AV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTEFACLLFSHLR------- 274
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+ + ++ EA +E + + +P +G+NA QY++F+A+R + +G ++
Sbjct: 275 HRPHPSVVQRIVKEAVAIEHEFLSDALPVSLIGMNAALMRQYIEFVADRLLYSLGQNKIY 334
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
T NPF +M +I L+ + NFFE RV+EY +
Sbjct: 335 NAT-NPFDFMD-MISLQGKTNFFEKRVSEYAKANV 367
>gi|296809816|ref|XP_002845246.1| ribonucleotide reductase [Arthroderma otae CBS 113480]
gi|238842634|gb|EEQ32296.1| ribonucleotide reductase [Arthroderma otae CBS 113480]
Length = 405
Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats.
Identities = 96/343 (27%), Positives = 156/343 (45%), Gaps = 30/343 (8%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++A + ++ +L L P+KY E Y A + W E+ + D+ W
Sbjct: 65 VKAKTPKELEAEEPLLQENPQRFVLFPIKYH---EMYKKAEASFWTAEEIDLSKDIHDWN 121
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
N L DDER I L FFA+S+ +V N++ + PE R + Q E +HS
Sbjct: 122 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSE 179
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
T+ +I + ++ + LF +P I KA+WA+++ Q D D F
Sbjct: 180 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKDSTFA 227
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
Q L F V EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 228 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLN 286
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ ++ EA +E + + +P +G+NA QY++F+A+R
Sbjct: 287 -------YRPDPTAVEAIITEAVSIEQEFLTDALPCALLGMNAKLMCQYIEFVADRLLVA 339
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+G + + T NPF +M I L + NFFE RV +YQ+ +
Sbjct: 340 LGNKKFYN-TTNPFDFMD-NISLAGKTNFFEKRVGDYQKAGVM 380
>gi|327261309|ref|XP_003215473.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 1 [Anolis carolinensis]
Length = 394
Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats.
Identities = 93/336 (27%), Positives = 154/336 (45%), Gaps = 28/336 (8%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
N D+ +L + P++Y W+ Y A + W EV + DL W+S L D
Sbjct: 71 NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 127
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 128 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 187
Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
D E LFN +P + KA+WA+++ + V +
Sbjct: 188 YIKDPKEREYLFNAIETLPCVKRKADWAMRWIG-------------DKHATYGERVVAFA 234
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 235 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------H 287
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G ++K
Sbjct: 288 KPSEERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK 347
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 348 -AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 381
>gi|241951066|ref|XP_002418255.1| ribonucleoside-diphosphate reductase small chain 1, putative;
ribonucleotide reductase r2 subunit 1, putative;
ribonucleotide reductase small subunit 1, putative
[Candida dubliniensis CD36]
gi|223641594|emb|CAX43555.1| ribonucleoside-diphosphate reductase small chain 1, putative
[Candida dubliniensis CD36]
Length = 413
Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats.
Identities = 90/332 (27%), Positives = 154/332 (46%), Gaps = 27/332 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L + P++Y W Y A + W E+ + DL W N L ++ER
Sbjct: 89 EEPLLVENKRRYVMFPIRYHEIWNFYKKAEASFWTAEEIDLSKDLDDWN--NKLNENERY 146
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ R L FFA+S+ +V N++ + PE + + Q E +HS T+ +I +
Sbjct: 147 FVSRVLAFFAASDGIVGENLIENFSTEVQLPEAKSFYGFQIMMENIHSETYSLLIETYIK 206
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LFN +P I KA+WA+++ Q D+ + V + E
Sbjct: 207 DPQEADYLFNAIANIPCIQKKADWAIKWIQ-------------DDEALYGERLVAFAAVE 253
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G+ + I RDE LH +F + ++ +
Sbjct: 254 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFAHLQN-------RPS 306
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ ++ EA +E Y + +P +G+N QY++F+A+R +G + ++ T
Sbjct: 307 PEIVEKIITEAVDVEKEYFTDALPVSLLGMNCNLMCQYIEFVADRLLLALGNKKVYNVT- 365
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV++YQ+ +
Sbjct: 366 NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 396
>gi|255711354|ref|XP_002551960.1| KLTH0B03938p [Lachancea thermotolerans]
gi|238933338|emb|CAR21522.1| KLTH0B03938p [Lachancea thermotolerans]
Length = 403
Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats.
Identities = 98/333 (29%), Positives = 156/333 (46%), Gaps = 27/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +L L P+KY W+ Y A + W E+ + DL W N + ++ER
Sbjct: 76 KEEPLLMENKRRFVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLHDWN--NRMNENER 133
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R + FFA+S+ +V N+V + +PE + + Q E +HS T+ +I +
Sbjct: 134 FFISRVIAFFAASDGIVNENLVENFSAEVQSPEAKCFYGFQIMMENIHSETYSLLIDTYI 193
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WA+++ Q D D F + L F V
Sbjct: 194 KDPKESDFLFNAIETIPQIKEKAEWAIRWIQ------------DEDALFAERLVAFAAV- 240
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + +K +
Sbjct: 241 EGVFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 295
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ EA +E Y + +P +G+NA QY++F+A+R +G + + T
Sbjct: 296 --AIIERIITEAVEIEQRYFRDALPVSLLGMNADLMNQYVEFVADRLLVALGNQKFYNVT 353
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L + NFFE RV++YQ+ +
Sbjct: 354 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVM 384
>gi|52077136|dbj|BAD46182.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
gi|52077275|dbj|BAD46317.1| putative ribonucleotide reductase R2 [Oryza sativa Japonica Group]
gi|186920364|gb|ACC95435.1| ribonucleotide diphosphate reductase small subunit 1 [Oryza sativa
Japonica Group]
Length = 339
Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats.
Identities = 88/333 (26%), Positives = 154/333 (46%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L S+ + P++Y WE Y A + W EV + D W L+ DER
Sbjct: 14 EEPLLAESSERFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 71
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + E R + Q E +HS + ++ +
Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF VP++ KA+WA+++ D + F + L + E
Sbjct: 132 DGAEKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVE 177
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLD------- 230
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + R ++ +A +E + + +P VG+N QY++F+A+R +G + ++
Sbjct: 231 EARVREIVADAVDIEREFVCDALPVALVGMNGDLMSQYIEFVADRLLMALGCKKMYNVA- 289
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV +YQ+ + +
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMS 321
>gi|254586079|ref|XP_002498607.1| ZYRO0G14388p [Zygosaccharomyces rouxii]
gi|238941501|emb|CAR29674.1| ZYRO0G14388p [Zygosaccharomyces rouxii]
Length = 412
Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats.
Identities = 97/334 (29%), Positives = 152/334 (45%), Gaps = 27/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +L L P+KY W+ Y A + W E+ + DL W N +++ ER
Sbjct: 87 KDEPLLVENKRRFVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDLDDWN--NKMSEGER 144
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 145 YFISRVLAFFAASDGIVNENLVENFSAEVQIPEAKCFYGFQIMMENIHSETYSLLIDTYS 204
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WA+++ Q D + V +
Sbjct: 205 RDTEESEFLFNAIENIPPIKEKAEWAIRWIQ-------------DDTALYAERLVAFAAV 251
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + +K +
Sbjct: 252 EGVFFSGSFAAIFWLKKKGLMPGLTFSNELICRDEGLHTDFACLLFAHLKN-------RP 304
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ EA +E Y + +P +G+NA QY++F+A+R +G E + T
Sbjct: 305 SPDIVERIITEAVSIEKRYFEDALPVALLGMNAALMNQYVEFVADRLLVALGNEKYYNVT 364
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M E I L + NFFE RV++YQ+ +
Sbjct: 365 -NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 396
>gi|328771482|gb|EGF81522.1| hypothetical protein BATDEDRAFT_16297 [Batrachochytrium
dendrobatidis JAM81]
Length = 336
Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats.
Identities = 103/345 (29%), Positives = 164/345 (47%), Gaps = 27/345 (7%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P++ + V ++ +L + L P+KY W Y A + W EV + D W
Sbjct: 2 PLELPSESTLVQNEPILTPDPRRSVLFPIKYPAVWRMYKKAEASFWTAEEVDLSKDTLDW 61
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ + LTDDER I R L FFA+S+ +V N+V + + PE R + Q E +HS
Sbjct: 62 EER--LTDDERYFISRVLAFFAASDGIVNENLVERFSQDVHIPEARYFYDFQIMIENIHS 119
Query: 129 HTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+ +I + D E LF+ VP I KA+WAL++ D F
Sbjct: 120 EMYSLLIDTYIKDRKERAFLFDAIDTVPCIRKKADWALRWI------------SDKKSSF 167
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ L F V EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 168 GERLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFTLL 226
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K + ++HEA +E ++ E++P +G+NA +QY++F+A+R
Sbjct: 227 NN-------KPTDSVIQQIIHEAVTIEQEFSTESLPVALIGMNANLMKQYIEFVADRLFI 279
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++G+ + NPF +M +I L+ + NFFE RV EYQ+ +
Sbjct: 280 ELGMPKKYGVG-NPFDFMD-MISLQGKTNFFEKRVGEYQKSGVMN 322
>gi|45360749|ref|NP_989048.1| ribonucleotide reductase M2, gene 1 [Xenopus (Silurana) tropicalis]
gi|38174078|gb|AAH61353.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana)
tropicalis]
Length = 378
Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats.
Identities = 98/339 (28%), Positives = 161/339 (47%), Gaps = 28/339 (8%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
K + D+ +L +LP++Y W+ Y A + W EV + DL W+ L
Sbjct: 52 KDPRIQDEPLLRDNPGRFVILPIEYHDIWQMYKKAEASFWTAEEVDLSKDLPHWE---AL 108
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
+ER I L FFA+S+ +V N+V + + E R + Q E +HS + +
Sbjct: 109 KPEERYFISYVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 168
Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
I + D E LFN +P + KA WAL++ D + F + +
Sbjct: 169 IDTYIKDPKEREFLFNAIETLPCVKKKAEWALRWI------------SDREAPFCERIVA 216
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
F V EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 217 FAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFKHVV----- 270
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
K +Q+ R ++ +A +E + E +P +G+N +QY++F+A+R ++G +
Sbjct: 271 --HKPSEQRVREIIIDAVKIEQEFLTEALPVELIGMNCKLMKQYIEFVADRLLLELGFKK 328
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+FK +ENPF +M E I L+ + NFFE +V EYQ+ +
Sbjct: 329 IFK-SENPFDFM-ENISLEGKTNFFEKKVAEYQKMGVMS 365
>gi|156387377|ref|XP_001634180.1| predicted protein [Nematostella vectensis]
gi|156221260|gb|EDO42117.1| predicted protein [Nematostella vectensis]
Length = 341
Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats.
Identities = 93/343 (27%), Positives = 157/343 (45%), Gaps = 28/343 (8%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
+ R N +D+ +L +LP++Y W+ Y A + W EV + D +
Sbjct: 11 SRAKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDF-- 68
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
L DDER+ + L FFA+S+ +V N+V + + PE R + Q E +HS
Sbjct: 69 -AKLNDDERMFVSHVLAFFAASDGIVNENLVECFSQEVQIPEARCFYGFQIAIENIHSEM 127
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I SL D+ E LFN +P + KA+WAL + +
Sbjct: 128 YSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWIN-------------PQRASFG 174
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+ + + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 175 ERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMYKYLVN 234
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
K ++ R ++ +A ++E + +P +G+N QY++F+A+R +
Sbjct: 235 -------KPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVAL 287
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ ++ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 288 NCQKVYNV-ENPFDFM-ENISLEGKTNFFEKRVGEYQKSGVMS 328
>gi|168015485|ref|XP_001760281.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688661|gb|EDQ75037.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 330
Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats.
Identities = 90/334 (26%), Positives = 152/334 (45%), Gaps = 29/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +L + + P+KY WE Y A + W EV + D W+ LTD+ER
Sbjct: 5 QEEPILMENPNRFTMFPIKYPQVWEMYKKAEASFWTAEEVDLSADSKHWE---ALTDNER 61
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I L FFA+S+ +V N+ + + + PE R + Q E +HS + ++ +
Sbjct: 62 HFISHVLAFFAASDGIVLENLAIRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAYI 121
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P +T KA WAL++ + S + + +
Sbjct: 122 KDHAEKNRLFNAIETIPCVTKKAEWALKWIHSAGS--------------FAERILAFACV 167
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F F I L + M G+ + I RDE LH +F + + +
Sbjct: 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLNNKLS------ 221
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ + ++ EA ++E + E + VG+N +Y+ F+A+R +G + +
Sbjct: 222 -EDRVYEIVCEAVVIEQEFVCEALSCDLVGMNKTLMSEYIDFVADRLLVSLGYPKKYN-S 279
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV EYQ+ + +
Sbjct: 280 HNPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 312
>gi|212723480|ref|NP_001131892.1| hypothetical protein LOC100193273 [Zea mays]
gi|194692834|gb|ACF80501.1| unknown [Zea mays]
gi|195624040|gb|ACG33850.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
Length = 339
Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats.
Identities = 90/332 (27%), Positives = 156/332 (46%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L SD + P+++ WE Y A + W EV + D W L+ DER
Sbjct: 15 EPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWDE--ALSPDERHF 72
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+S+ +V N+ + E R + Q E +HS + ++ + D
Sbjct: 73 ISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRD 132
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LF VP++ KA+WA+++ D + F + L + EG
Sbjct: 133 DVEKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVEG 178
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE LH +F + + ++ + +
Sbjct: 179 IFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDVLRSKLD-------E 231
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ RT++ +A +E + + +P VG+N QY++F+A+R +G + ++ T N
Sbjct: 232 ARVRTIVADAVDIEREFVCDALPVSLVGMNGDLMSQYIEFVADRLLMALGCKKMYNVT-N 290
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF WM E+I L+ + NFFE RV +YQ+ + +
Sbjct: 291 PFDWM-ELISLQGKTNFFEKRVGDYQKASVMN 321
>gi|327261313|ref|XP_003215475.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 3 [Anolis carolinensis]
Length = 391
Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats.
Identities = 92/337 (27%), Positives = 153/337 (45%), Gaps = 28/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
D+ +L + P++Y W+ Y A + W EV + DL W+S L
Sbjct: 67 PRRTDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKP 123
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
DE+ I L FFA+S+ +V N+V + + E R + Q E +HS + +I
Sbjct: 124 DEKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLID 183
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LFN +P + KA+WA+++ + V +
Sbjct: 184 TYIKDPKEREYLFNAIETLPCVKRKADWAMRWIG-------------DKHATYGERVVAF 230
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 231 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------- 283
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G ++
Sbjct: 284 HKPSEERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIY 343
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
K ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 344 K-AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 378
>gi|170032272|ref|XP_001844006.1| ribonucleoside-diphosphate reductase small chain [Culex
quinquefasciatus]
gi|167872122|gb|EDS35505.1| ribonucleoside-diphosphate reductase small chain [Culex
quinquefasciatus]
Length = 391
Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats.
Identities = 90/343 (26%), Positives = 157/343 (45%), Gaps = 28/343 (8%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++AG+ + + +L + P++Y W+ Y A + W EV + DL W+
Sbjct: 60 LKAGQAPFDPSIEPLLKDNPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLGDWE 119
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
L E+ I L FFA+S+ +V N+V + + E R + Q E VHS
Sbjct: 120 ---KLKSGEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 176
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
+ +I + D E LFN +P + KA+WA+ + +
Sbjct: 177 MYSLLIDTYIRDPKEREYLFNAIETLPCVKKKADWAMNWISS-------------KHANF 223
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 224 GERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFRYLV 283
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
K +++ ++ EA ++E + + +P +G+N QY++F+A+R +
Sbjct: 284 Q-------KPSKERVLEIIREAVVIEQEFLTKALPVDLLGMNCELMSQYIEFVADRLLLE 336
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+G E ++ T+NPF +M E I L+ + NFFE +V EYQ+ +
Sbjct: 337 LGNEKIYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 377
>gi|18079279|ref|NP_525111.1| ribonucleoside diphosphate reductase small subunit [Drosophila
melanogaster]
gi|12644287|sp|P48592|RIR2_DROME RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
AltName: Full=Ribonucleotide reductase small subunit
gi|10727628|gb|AAF58599.2| ribonucleoside diphosphate reductase small subunit [Drosophila
melanogaster]
gi|15292183|gb|AAK93360.1| LD41588p [Drosophila melanogaster]
gi|220946286|gb|ACL85686.1| CG8975-PA [synthetic construct]
gi|220955972|gb|ACL90529.1| RnrS-PA [synthetic construct]
Length = 393
Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats.
Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++ + + +L + P++Y W+ Y A + W EV + DL W
Sbjct: 62 MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
L DDER I L FFA+S+ +V N+V + + E R + Q E VHS
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
+ +I + D + LFN +P++ KA+WAL + +
Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWISS-------------KSANF 225
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLV 285
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ +++ ++ +A +E + + +P +G+N QY++F+A+R +
Sbjct: 286 Q-------RPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+G+ ++ T+NPF +M E+I L + NFFE +V EYQ+ +
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVGEYQRMGVVS 380
>gi|321263777|ref|XP_003196606.1| ribonucleoside-diphosphate reductase [Cryptococcus gattii WM276]
gi|317463083|gb|ADV24819.1| Ribonucleoside-diphosphate reductase, putative [Cryptococcus gattii
WM276]
Length = 401
Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats.
Identities = 94/341 (27%), Positives = 157/341 (46%), Gaps = 27/341 (7%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
G+ D+ +L + L P+KY W+ Y A + W E+ + DL W+
Sbjct: 63 FVGDLDCEEKDEPLLKETNARFVLFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWE- 121
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
N L D+ER I+ L FFA+S+ +V N+V + E + + Q E +H+ T
Sbjct: 122 -NKLNDNERYFIEHVLAFFAASDGIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAET 180
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I + D LF+ +P I KA+WAL++ D F +
Sbjct: 181 YSLLIDTYIKDTARRNFLFDAMDTIPCIRKKADWALRWI------------SDKRSCFGE 228
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
L F V EG++F FA I L + M G+ + I RDE LH +F + ++
Sbjct: 229 RLIAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFTHLRR 287
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
+ ++ EA +E + + +P +G+NA QY++F+A+R +
Sbjct: 288 -------RPHPDTIARIIKEAVSIEQEFLTDALPVSLIGMNAKLMCQYIEFVADRLLVAL 340
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
G E ++ + NPF +M E+I L+ + NFFE+RV+ Y +
Sbjct: 341 GNEKIWN-STNPFDFM-EMISLQGKANFFESRVSAYSKSGV 379
>gi|327261311|ref|XP_003215474.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 2 [Anolis carolinensis]
Length = 390
Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats.
Identities = 93/336 (27%), Positives = 154/336 (45%), Gaps = 28/336 (8%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
N D+ +L + P++Y W+ Y A + W EV + DL W+S L D
Sbjct: 67 NAQDEPLLRDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---LKPD 123
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 124 EKYFISHILAFFAASDGIVNENLVERFSQEIQVTEARCFYGFQIAMENIHSEMYSLLIDT 183
Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
D E LFN +P + KA+WA+++ + V +
Sbjct: 184 YIKDPKEREYLFNAIETLPCVKRKADWAMRWIG-------------DKHATYGERVVAFA 230
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 231 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------H 283
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G ++K
Sbjct: 284 KPSEERVREIITNAVRIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLILELGFNKIYK 343
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 344 -AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377
>gi|224046583|ref|XP_002198998.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
Length = 362
Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats.
Identities = 100/346 (28%), Positives = 167/346 (48%), Gaps = 28/346 (8%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+S A E ++D++ +L + P++Y W+ Y A + W EV + DL
Sbjct: 28 MSSSSAAENGSDLDEEPLLRKNHRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP 87
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E V
Sbjct: 88 HW---NKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENV 144
Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
HS + +I + D + LFN +P + KA+WAL++ + D +
Sbjct: 145 HSEMYSLLIDTYIKDPKKRDFLFNAIETMPCVKKKADWALKWIE------------DRES 192
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
F + + F V EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 193 TFGERVVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFH 251
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ + +++ ++ A +E + E +P G +G+N +QY++F+A+R
Sbjct: 252 YLVN-------RPSEERVCEIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRL 304
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
++G +F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 305 LMELGFSKVFNV-ENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 348
>gi|298707394|emb|CBJ30029.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 380
Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats.
Identities = 91/348 (26%), Positives = 152/348 (43%), Gaps = 28/348 (8%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+S ++ E + + +L L P++ W+ Y A W E+ + D
Sbjct: 46 VSEMRRKEMEGTLKPEPLLVENPGRFVLFPIQDNEVWQMYKKAEACFWTAEELDLAHDHK 105
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W+ GLTDDER +K L FFA+S+ +V N+ + E R + Q E +
Sbjct: 106 DWE---GLTDDERHFVKHVLAFFAASDGIVNENLASNFSSEIQLSEARCFYGFQIAIENI 162
Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
HS + +I + D E LFN VP + KA WAL++ D
Sbjct: 163 HSEVYSLLIDTYVKDAAEKTHLFNAMETVPCVRRKARWALRW-------------CDPKL 209
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ V + EG++F F + L + M G+ + I RDE LH +F +
Sbjct: 210 ASYAERLVAFAAVEGIFFSGSFCAVFWLKKRGLMPGLCFSNELISRDEGLHTDFACLLFR 269
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
++ + P ++ ++ +A +E + +P +G+N+ QY++F A+R
Sbjct: 270 KLVNKLPV-------ERVAEIICDAVDIEKEFITSALPVELIGMNSALMRQYIEFCADRL 322
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
++G E + + NPF WM E+I L+ + NFFE RV EY +
Sbjct: 323 LMELGCEKKYN-STNPFDWM-EMISLQGKTNFFEKRVGEYSKSGVGVD 368
>gi|198420293|ref|XP_002130242.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase subunit
M2 (Ribonucleotide reductase small subunit)
(Ribonucleotide reductase small chain) [Ciona
intestinalis]
Length = 393
Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats.
Identities = 88/333 (26%), Positives = 153/333 (45%), Gaps = 28/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+++ +L + P++Y W+ Y A + W EV + D+ W+ L +ER
Sbjct: 72 NEEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDMVHWE---ALKPNER 128
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 129 KFISHVLAFFAASDGIVNENLVERFAQEVQITEARFFYGFQIAIENIHSEMYSLLINTYI 188
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P + KA WAL++ + + + +
Sbjct: 189 RDTHEREFLFNAIETLPCVRKKAEWALKWI-------------SDSESTYAERIIAFASV 235
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + + K
Sbjct: 236 EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HKP 288
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ + ++ +A +E + + +P +G+N +QY++F+A+R ++G +FK
Sbjct: 289 SEARVVEIVKDAVTIEQEFLTDALPVALIGMNNKLMKQYIEFVADRLLVELGCSKVFKV- 347
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
ENPF +M E+I L+ + NFFE RV EYQ+ +
Sbjct: 348 ENPFDFM-ELISLEGKTNFFEKRVGEYQKAGVM 379
>gi|89268988|emb|CAJ81953.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana)
tropicalis]
gi|89269815|emb|CAJ81580.1| ribonucleotide reductase m2 polypeptide [Xenopus (Silurana)
tropicalis]
Length = 386
Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats.
Identities = 93/339 (27%), Positives = 156/339 (46%), Gaps = 28/339 (8%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
K + D+ +L + P++Y W+ Y A + W EV + DL W+S L
Sbjct: 60 KDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES---L 116
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
+E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +
Sbjct: 117 KAEEKYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL 176
Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
I + D E LFN +P + KA+WAL++ Q + V
Sbjct: 177 IDTYIKDPKEREYLFNAIETLPCVKKKADWALRWI-------------SDKQATYGERVV 223
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
+ EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 224 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVN---- 279
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
K +++ ++ +A +E + E +P +G+N +QY++F+A+R ++G
Sbjct: 280 ---KPSEERVVQLITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLLLELGFNK 336
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+FK T NPF +M E I L+ + NFFE +V EYQ+ +
Sbjct: 337 VFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQKMGVMS 373
>gi|56118690|ref|NP_001007890.1| ribonucleotide reductase M2, gene 2 [Xenopus (Silurana) tropicalis]
gi|51258920|gb|AAH80161.1| ribonucleotide reductase M2 polypeptide [Xenopus (Silurana)
tropicalis]
Length = 386
Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats.
Identities = 93/339 (27%), Positives = 156/339 (46%), Gaps = 28/339 (8%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
K + D+ +L + P++Y W+ Y A + W EV + DL W+S L
Sbjct: 60 KDPRIQDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLRHWES---L 116
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
+E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +
Sbjct: 117 KAEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLL 176
Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
I + D E LFN +P + KA+WAL++ Q + V
Sbjct: 177 IDTYIKDPKEREYLFNAIETLPCVKKKADWALRWIG-------------DKQATYGERVV 223
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
+ EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 224 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVN---- 279
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
K +++ ++ +A +E + E +P +G+N +QY++F+A+R ++G
Sbjct: 280 ---KPSEERVVQLITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLLLELGFNK 336
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+FK T NPF +M E I L+ + NFFE +V EYQ+ +
Sbjct: 337 VFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQKMGVMS 373
>gi|148234092|ref|NP_001079369.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus laevis]
gi|27371032|gb|AAH41209.1| MGC52676 protein [Xenopus laevis]
Length = 386
Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats.
Identities = 94/346 (27%), Positives = 159/346 (45%), Gaps = 28/346 (8%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
+P K ++D+ +L + P++Y W+ Y A + W EV + DL
Sbjct: 53 TPKSKAPKNPRLEDEPLLKDNPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQH 112
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
W+S L +E+ I L FFA+S+ +V N+V + + E R + Q E +H
Sbjct: 113 WES---LKKEEKYFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIH 169
Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
S + +I + D E LFN +P + KA+WAL + Q
Sbjct: 170 SEMYSLLIDTYVKDPKEREYLFNAIETLPCVKKKADWALHWIG-------------DKQA 216
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ V + EG++F FA I L + M G+ + I RDE LH +F +
Sbjct: 217 TFGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKH 276
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ K +++ ++ +A +E + E +P +G+N +QY++F+A+R
Sbjct: 277 LIR-------KPSEERVVELITDAVQIEQEFLTEALPVNLIGMNCTLMKQYIEFVADRLL 329
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++G + +FK T NPF +M E I L+ + NFFE +V EYQ+ +
Sbjct: 330 LELGFKKVFKAT-NPFDFM-ENISLEGKTNFFEKKVGEYQKMGVMS 373
>gi|195333568|ref|XP_002033462.1| GM20395 [Drosophila sechellia]
gi|195582581|ref|XP_002081105.1| GD25870 [Drosophila simulans]
gi|194125432|gb|EDW47475.1| GM20395 [Drosophila sechellia]
gi|194193114|gb|EDX06690.1| GD25870 [Drosophila simulans]
Length = 393
Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats.
Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++ + + +L + P++Y W+ Y A + W EV + DL W
Sbjct: 62 MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
L DDER I L FFA+S+ +V N+V + + E R + Q E VHS
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
+ +I + D + LFN +P++ KA+WAL + +
Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWISS-------------KSANF 225
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLV 285
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ +++ ++ +A +E + + +P +G+N QY++F+A+R +
Sbjct: 286 Q-------RPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+G+ ++ T+NPF +M E+I L + NFFE +V EYQ+ +
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVAEYQRMGVVS 380
>gi|72008642|ref|XP_780110.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I
isoform 1 [Strongylocentrotus purpuratus]
gi|115928579|ref|XP_001179668.1| PREDICTED: similar to ribonucleotide reductase protein R2 class I
[Strongylocentrotus purpuratus]
Length = 412
Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats.
Identities = 101/354 (28%), Positives = 167/354 (47%), Gaps = 30/354 (8%)
Query: 2 ANNTGLSPIQAGEKRV--NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
A + + P +G+K V N +D+ +L + + P++Y W+ Y A + W EV
Sbjct: 66 AKSKLVKPENSGKKVVSFNKEDEPLLRENARRFVIFPIQYHDIWQFYKKAEASFWTAEEV 125
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ DL W L D+ER I L FFA+S+ +V N+V + + E R +
Sbjct: 126 DLSKDLDHW---ANLKDEERHFISHVLAFFAASDGIVNENLVERFSQEVQVAEARCFYGF 182
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
Q E +HS + +I + D + LFN +P +T KA WAL + + S F T
Sbjct: 183 QIAIENIHSEMYSLLIDTYIKDSVQRDFLFNAVETLPCVTKKAQWALNWIGS-DSADFGT 241
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
V + EG++F FA I L + M G+ + I RDE LH +
Sbjct: 242 ------------RIVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCD 289
Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
F + + K ++ + ++ EA +E + + +P +G+NA ++Y+
Sbjct: 290 FACLMFKHLNN-------KPDEEHVQGIIKEAVAIEQEFLTDALPCSLIGMNAVLMKRYI 342
Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+F+A+R ++G ++K ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 343 EFVADRLLVELGCGKIWKV-ENPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 394
>gi|195485577|ref|XP_002091148.1| GE13485 [Drosophila yakuba]
gi|194177249|gb|EDW90860.1| GE13485 [Drosophila yakuba]
Length = 393
Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats.
Identities = 87/344 (25%), Positives = 156/344 (45%), Gaps = 28/344 (8%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++ + + +L + P++Y W+ Y A + W EV + DL W
Sbjct: 62 MEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
L DDER I L FFA+S+ +V N+V + + E R + Q E VHS
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 178
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
+ +I + D + LFN +P++ KA+WAL + +
Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALSWISS-------------KSANF 225
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLV 285
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ +++ ++ +A +E + + +P +G+N QY++F+A+R +
Sbjct: 286 Q-------RPKRERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+G+ ++ T+NPF +M E+I L + NFFE +V EYQ+ +
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVGEYQRMGVVS 380
>gi|168049349|ref|XP_001777126.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671569|gb|EDQ58119.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 325
Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats.
Identities = 91/335 (27%), Positives = 152/335 (45%), Gaps = 29/335 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
++ + +L + P+KY WE Y A + W EV + DL W+ LTD+E
Sbjct: 1 MEQEPILAENPGRFCMFPIKYPQVWEMYKKAEASFWTAEEVDLSADLKHWE---ALTDNE 57
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N+ + + + PE R + Q E +HS + ++ +
Sbjct: 58 RHFISHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENIHSEMYSLLLEAY 117
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D+ E LFN +P +T KA WAL++ + S + + +
Sbjct: 118 IKDQSEKHRLFNAIETIPCVTRKAEWALKWIDSSGS--------------FAERILAFAC 163
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F F I L + M G+ + I RDE LH +F + + +
Sbjct: 164 VEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLNNKLS----- 218
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+ + ++ EA +E + E + VG+N +Y+ F+A+R +G +
Sbjct: 219 --EDRVHEIVCEAVDIEREFVCEALSCDLVGMNKIMMSEYIDFVADRLLVSLGYNKRYN- 275
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV EYQ+ + +
Sbjct: 276 ARNPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 309
>gi|58260896|ref|XP_567858.1| ribonucleoside-diphosphate reductase [Cryptococcus neoformans var.
neoformans JEC21]
gi|134116993|ref|XP_772723.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255341|gb|EAL18076.1| hypothetical protein CNBK0970 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229939|gb|AAW46341.1| ribonucleoside-diphosphate reductase, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 401
Score = 267 bits (681), Expect = 2e-69, Method: Composition-based stats.
Identities = 94/341 (27%), Positives = 157/341 (46%), Gaps = 27/341 (7%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
G+ D+ +L + L P+KY W+ Y A + W E+ + DL W+
Sbjct: 63 FVGDLDCEEKDEPLLKETNARFVLFPIKYHEIWQMYKKAQASFWTAEEINLAPDLHDWE- 121
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
N L D+ER I+ L FFA+S+ +V N+V + E + + Q E +H+ T
Sbjct: 122 -NKLNDNERYFIEHVLAFFAASDGIVNENLVERFSAEVQAAEAKSFYGFQIMMENIHAET 180
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I + D LF+ +P I KA+WAL++ D F +
Sbjct: 181 YSLLIDTYIKDTARRNFLFDAIDTIPCIRKKADWALRWI------------SDKRSCFGE 228
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
L F V EG++F FA I L + M G+ + I RDE LH +F + ++
Sbjct: 229 RLIAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFTHLRR 287
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
+ ++ EA +E + + +P +G+NA QY++F+A+R +
Sbjct: 288 -------RPHPDTIARIIKEAVTIEQEFLTDALPVSLIGMNAKLMCQYIEFVADRLLVAM 340
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
G E ++ + NPF +M E+I L+ + NFFE+RV+ Y +
Sbjct: 341 GNEKIWN-STNPFDFM-EMISLQGKANFFESRVSAYSKSGV 379
>gi|225432510|ref|XP_002279943.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 340
Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats.
Identities = 93/341 (27%), Positives = 155/341 (45%), Gaps = 29/341 (8%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+++ +L S + P++Y WE Y A + W EV + D+ W+S
Sbjct: 10 KRPDEEQEEEPILMKNSQRFCMFPIRYRQLWEMYKKAEASFWTAEEVDLSHDVQQWES-- 67
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L++ E+ I L FFA+S+ +V N+ + PE R + Q E +HS +
Sbjct: 68 -LSNSEKHFISHVLAFFAASDGIVLENLAARFLHDIQIPEARAFYGFQIAMENIHSEMYS 126
Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
++ + D E LFN + + KA WAL + Q+ +
Sbjct: 127 LLLETYIKDSKEKHRLFNAIESISCVAGKAKWALDWIQS--------------STLFAER 172
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
+ + EG++F F I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 173 LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQL 232
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
P QK ++HEA +E + E +P +G+NA QY++F+A+R +G
Sbjct: 233 PW-------QKVHHIVHEAVEIETQFVCEALPCALIGMNATLMSQYIKFVADRLLVALGY 285
Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
E + ENPF WM E I L+ + NFFE RV +YQ+ + +
Sbjct: 286 ERKYNV-ENPFDWM-EFISLQGKANFFERRVGDYQKASIMS 324
>gi|156387375|ref|XP_001634179.1| predicted protein [Nematostella vectensis]
gi|156221259|gb|EDO42116.1| predicted protein [Nematostella vectensis]
Length = 384
Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats.
Identities = 92/344 (26%), Positives = 156/344 (45%), Gaps = 28/344 (8%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
+ R N +D+ +L +LP++Y W+ Y A + W EV + D +
Sbjct: 54 SRAKSRFNTEDEPLLRENPHRFVILPIQYTEIWQMYKKAEASFWTAEEVDLSKDSHDF-- 111
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
L D ER+ + L FFA+S+ +V N+V + + PE R + Q E +HS
Sbjct: 112 -AKLNDHERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEM 170
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I SL D+ E LFN +P + KA+WAL + +
Sbjct: 171 YSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWIN-------------PQRASFG 217
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+ + + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 218 ERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMYKYLVN 277
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
K ++ R ++ +A ++E + +P +G+N QY++F+A+R +
Sbjct: 278 -------KPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVAL 330
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
+ ++ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 331 NCQKVYN-AENPFDFM-ENISLEGKTNFFEKRVGEYQKSGVMSD 372
>gi|300676950|gb|ADK26821.1| ribonucleotide reductase M2 [Zonotrichia albicollis]
Length = 390
Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats.
Identities = 92/340 (27%), Positives = 157/340 (46%), Gaps = 28/340 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+R +++ +L + P++Y W+ Y A + W EV + DL W+S
Sbjct: 63 AERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES--- 119
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L +E+ I L FFA+S+ +V N+V + + E R + Q E +HS +
Sbjct: 120 LKPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSL 179
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D E LFN +P + KA+WA+ + + +
Sbjct: 180 LIDTYIKDSQEREFLFNAIETLPCVKKKADWAMCWIG-------------DKKATYGERV 226
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 227 VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL----- 281
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
K +++ R ++ A L+E + E +P +G+N +QY++F+A+R ++G
Sbjct: 282 --IHKPSEERVREIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFN 339
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++K ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 340 KIYK-AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377
>gi|189501948|ref|YP_001957665.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497389|gb|ACE05936.1| hypothetical protein Aasi_0535 [Candidatus Amoebophilus asiaticus
5a2]
Length = 355
Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats.
Identities = 90/332 (27%), Positives = 152/332 (45%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + L P+++ WE Y A + W E+ + DL W L D ER
Sbjct: 34 EPILQENKNRFVLFPIEHHDIWEFYKKAEASFWTAEEIDLGQDLKDW---ANLNDGERHF 90
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D
Sbjct: 91 ISHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGFQIAVENIHSETYSLLIDTYIKD 150
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN + + KA+WAL++ + S + V + EG
Sbjct: 151 PQERDKLFNAIDTLDCVKKKADWALRWIEQAS---------------FAERLVAFAAVEG 195
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G++ + I RDE LH +F + K +
Sbjct: 196 IFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYANHLQ------NKLPE 249
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ R ++ +A +E + + +P +G+NA QY++F+A+R ++G ++ T N
Sbjct: 250 ERVREIITDAVAIEKEFVTDALPVKLIGMNADLMSQYIEFVADRLLLELGCSKVYNAT-N 308
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E+I L+ + NFFE RV EYQ+ +K
Sbjct: 309 PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMK 339
>gi|242076364|ref|XP_002448118.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor]
gi|241939301|gb|EES12446.1| hypothetical protein SORBIDRAFT_06g021460 [Sorghum bicolor]
Length = 339
Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats.
Identities = 89/333 (26%), Positives = 154/333 (46%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L SD + P+++ WE Y A + W EV + D W L+ DER
Sbjct: 14 EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 71
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + E R + Q E +HS + ++ +
Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF VP++ KA+WA+++ D + F + L + E
Sbjct: 132 DGAEKDRLFRAIETVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVE 177
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLD------- 230
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + R ++ +A +E + + +P VG+N QY++F+A+R +G + ++
Sbjct: 231 ESRVREIVADAVDIEREFVCDALPVALVGMNGALMSQYIEFVADRLLMALGHKKMYNVA- 289
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV EYQ+ + +
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 321
>gi|156545974|ref|XP_001606963.1| PREDICTED: similar to ENSANGP00000013211 [Nasonia vitripennis]
Length = 388
Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats.
Identities = 89/341 (26%), Positives = 153/341 (44%), Gaps = 28/341 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+ + +L L P+++ W Y A + W EV + D+A W N
Sbjct: 59 TPAFDPQLEPLLKENPGRFVLFPIQWPDIWHMYKKAEASFWTVEEVDLSKDMADW---NR 115
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L D+ER I L FFA+S+ +V N+V + + E R + Q E +HS +
Sbjct: 116 LNDNERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQVAIENIHSEMYSL 175
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D + LFN +P + KANWAL + D +
Sbjct: 176 LIDTYISDASQRQFLFNAIETLPCVAKKANWALNWI-------------SHDSATFAERV 222
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
+ + EG++F FA I L + M G+ + I RDE LH +F + I
Sbjct: 223 IAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHIVQ--- 279
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
K +++ +++ +A +E + + +P +G+N QY++F+A+R ++G
Sbjct: 280 ----KPSEERVISIIKDAVTIEQEFLTDALPVEMIGMNCRLMCQYIEFVADRLLGELGCP 335
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
++ +ENPF +M I L+ + NFFE +V EYQ+ ++
Sbjct: 336 KVYN-SENPFDFMEH-ISLEGKTNFFEKKVGEYQKWGVMQD 374
>gi|212274629|ref|NP_001130908.1| hypothetical protein LOC100192012 [Zea mays]
gi|195636980|gb|ACG37958.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
Length = 339
Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats.
Identities = 90/333 (27%), Positives = 152/333 (45%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ +L SD + P++Y WE Y A + W EV + D W L+ DER
Sbjct: 14 QEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 71
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + E R + Q E +HS + ++ +
Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQAAEARAFYGFQIAIENIHSEMYSLLLETYIR 131
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF VP++ KA+WA+++ D + F + L + E
Sbjct: 132 DGTEKDRLFRAIETVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVE 177
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLD------- 230
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + R ++ +A +E + + +P VG+N QY++F+A+R +G ++
Sbjct: 231 ESRVREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGHRKMYNVA- 289
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV EYQ+ + +
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 321
>gi|326917964|ref|XP_003205263.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
[Meleagris gallopavo]
Length = 353
Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats.
Identities = 94/339 (27%), Positives = 161/339 (47%), Gaps = 28/339 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E + + ++ +L + P+++ W+ Y A + W EV + DL W N
Sbjct: 26 ENGLKLHEEPLLRKNPRRFVIFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 82
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS +
Sbjct: 83 LKPDEKYFISHILAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEMYSL 142
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D + LFN +P + KA+WAL++ + +
Sbjct: 143 LIDTYIKDPEKRDFLFNAIETMPCVKKKADWALKWIE-------------DRHSTFGERV 189
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 190 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFHYLVN--- 246
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
+ +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G
Sbjct: 247 ----RPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLMELGFS 302
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+F + ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 303 KVF-HAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 339
>gi|266918|sp|P07201|RIR2_SPISO RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit;
AltName: Full=p41
gi|10342|emb|CAA38919.1| M2 (small) subunit of ribonucleotide reductase [Spisula
solidissima]
Length = 384
Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats.
Identities = 93/349 (26%), Positives = 157/349 (44%), Gaps = 28/349 (8%)
Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
T L + + + +L +LP++Y W+ Y A + W EV + D
Sbjct: 45 TPLKQEIKPVVKKSQQVEPLLADNPRRFVVLPIQYHDIWKMYKKAEASFWTAEEVDLSKD 104
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+A W+S L +E+ I L FFA+S+ +V N+V + + E R + Q E
Sbjct: 105 MAHWES---LKKEEKHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAME 161
Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
+HS + +I + D E LFN +P + KA+WA+++
Sbjct: 162 NIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADWAMRWIN-------------D 208
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
D + V + EG++F FA I L + M G+ + I RDE LH +F +
Sbjct: 209 DSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNELISRDEGLHCDFACLM 268
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
+ + K Q++ ++ EA +E + E +P +G+N QY++F+A+
Sbjct: 269 FSHLVN-------KPSQERIHQIIDEAVKIEQVFLTEALPCRLIGMNCDLMRQYIEFVAD 321
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
R ++ + L+ ENPF +M I L+ + NFFE RV EYQ+ +
Sbjct: 322 RLLLELKCDKLYN-KENPFDFMEH-ISLEGKTNFFEKRVGEYQKMGVMS 368
>gi|242095388|ref|XP_002438184.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor]
gi|241916407|gb|EER89551.1| hypothetical protein SORBIDRAFT_10g009290 [Sorghum bicolor]
Length = 339
Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats.
Identities = 89/333 (26%), Positives = 155/333 (46%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L SD + P+++ WE Y A + W EV + D W L+ DER
Sbjct: 14 EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVDLSSDARHWDE--ALSPDERH 71
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + E R + Q E +HS + ++ +
Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D+ E LF VP++ KA+WA+++ D + F + L + E
Sbjct: 132 DDAEKDRLFRAIDTVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVE 177
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + ++ +
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYELLRSKLD------- 230
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + R ++ +A +E + + +P VG+N QY++F+A+R +G + ++ T
Sbjct: 231 EARVREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGCKKMYNAT- 289
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV +YQ+ + +
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGDYQKASVMN 321
>gi|194690416|gb|ACF79292.1| unknown [Zea mays]
gi|194704028|gb|ACF86098.1| unknown [Zea mays]
gi|195619132|gb|ACG31396.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
gi|223943167|gb|ACN25667.1| unknown [Zea mays]
Length = 339
Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats.
Identities = 90/333 (27%), Positives = 152/333 (45%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ +L SD + P++Y WE Y A + W EV + D W L+ DER
Sbjct: 14 QEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERH 71
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + E R + Q E +HS + ++ +
Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF VP++ KA+WA+++ D + F + L + E
Sbjct: 132 DGTEKDRLFRAIETVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVE 177
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLD------- 230
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + R ++ +A +E + + +P VG+N QY++F+A+R +G ++
Sbjct: 231 ESRVREIVADAVDIEREFVCDALPVALVGMNGGLMSQYIEFVADRLLMALGHRKMYNVA- 289
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L+ + NFFE RV EYQ+ + +
Sbjct: 290 NPFDWM-ELISLQGKTNFFEKRVGEYQKASVMS 321
>gi|312889900|ref|ZP_07749444.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM
18603]
gi|311297432|gb|EFQ74557.1| Ribonucleoside-diphosphate reductase [Mucilaginibacter paludis DSM
18603]
Length = 343
Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats.
Identities = 92/344 (26%), Positives = 159/344 (46%), Gaps = 30/344 (8%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
R++ +++ +L D +LP+ Y WE Y + W E+ + DD+ W
Sbjct: 15 NTVTRMSQENELLLRENKDRFVILPINYPQIWEMYKKHEASFWTAEEIDLSDDMKDW--- 71
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
N L D ER I L FFA+S+ +V N+ + + PE R + Q E +HS T+
Sbjct: 72 NNLNDGERHFISHILAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETY 131
Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
+I + D E LF+ VP + K WAL++ + + +
Sbjct: 132 ALLIDTYIKDTTEKNRLFHAIETVPCVKKKGEWALKWIENGT---------------FAE 176
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
V + EG++F F I L + M G+ + I RDE +H F + + + +
Sbjct: 177 RLVAFAAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCEFACLLYSMLSNK 236
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
++ T++ +A +E + + +P +G+NA QY++F+A+R ++G
Sbjct: 237 LS-------KEAVTTIIADAVEIEKEFVTDALPVNLIGMNAKLMSQYIEFVADRWLQELG 289
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+ L+ + NPF +M E+I L+ + NFFE RV +YQ+ L D
Sbjct: 290 YDKLY-HATNPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLNND 331
>gi|255530602|ref|YP_003090974.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM
2366]
gi|255343586|gb|ACU02912.1| Ribonucleoside-diphosphate reductase [Pedobacter heparinus DSM
2366]
Length = 324
Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats.
Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 30/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+++ +L D LLP+KY WE Y + + W E+ + DD W + L D ER
Sbjct: 3 EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I L FF++S+ +V N+ + + PE R + Q E +HS T+ +I +
Sbjct: 60 HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LF+ VP + KA WAL++ S + V +
Sbjct: 120 KDPDEKDRLFHAIETVPCVKKKAEWALRWIDNGS---------------FAERLVAFAAV 164
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F F I L + M G+ + I RDE H F + +K +
Sbjct: 165 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGSHCEFACLLYGMLKNKLS------ 218
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
Q++ ++ +A +E + + +P +G+NA QY++F+A+R ++G ++ T
Sbjct: 219 -QEQVHGIIRDAVEIEKEFVTDALPVALIGMNAKLMSQYIEFVADRWLQELGYSKIYNAT 277
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M E+I L+ + NFFE RV +YQ+ L
Sbjct: 278 -NPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLT 309
>gi|195119943|ref|XP_002004488.1| GI19586 [Drosophila mojavensis]
gi|193909556|gb|EDW08423.1| GI19586 [Drosophila mojavensis]
Length = 393
Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats.
Identities = 88/340 (25%), Positives = 154/340 (45%), Gaps = 28/340 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+ + +L + P++Y W+ Y A + W EV + DL W
Sbjct: 66 AAPFDPSLEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---AR 122
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LTD+ER I L FFA+S+ +V N+V + + E R + Q E VHS +
Sbjct: 123 LTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSV 182
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D E LFN +P++ KA+WAL + + +
Sbjct: 183 LIDTYIRDPQERDYLFNAVETMPAVKRKADWALSWISS-------------KAANFGERI 229
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
+ + EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 230 IAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVMMFRHLVQ--- 286
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
+ +++ ++ +A +E + + +P +G+N QY++F+A+R ++G+
Sbjct: 287 ----RPSRERIIEIISDAVTIEQEFLTDALPVNLIGMNCALMSQYIEFVADRLLVELGVG 342
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++ T+NPF +M E+I L + NFFE +V EYQ+
Sbjct: 343 KIYN-TKNPFTFM-EMISLDGKTNFFEKKVGEYQRMGVTS 380
>gi|118087248|ref|XP_418364.2| PREDICTED: hypothetical protein [Gallus gallus]
Length = 353
Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats.
Identities = 98/342 (28%), Positives = 165/342 (48%), Gaps = 28/342 (8%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
A E + ++ +L + P+++ W+ Y A + W EV + DL W
Sbjct: 23 SAAENGLKPHEEPLLRKNPRRFVIFPIQHPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 80
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS
Sbjct: 81 -NKLKADEKYFISHVLAFFAASDGIVNENLVARFSQEVQIPEARCFYGFQILIENVHSEM 139
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I + D + LFN +P + KA+WAL++ + D + F +
Sbjct: 140 YSLLIDTYIKDPEKRDFLFNAIETMPCVKKKADWALKWIE------------DRESTFGE 187
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+ F V EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 188 RVVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFHYLVN 246
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
+ +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++
Sbjct: 247 -------RPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLMEL 299
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
G +F + ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 300 GFSKVF-HAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 339
>gi|302783485|ref|XP_002973515.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii]
gi|302787555|ref|XP_002975547.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii]
gi|300156548|gb|EFJ23176.1| hypothetical protein SELMODRAFT_175019 [Selaginella moellendorffii]
gi|300158553|gb|EFJ25175.1| hypothetical protein SELMODRAFT_173451 [Selaginella moellendorffii]
Length = 347
Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats.
Identities = 93/346 (26%), Positives = 160/346 (46%), Gaps = 30/346 (8%)
Query: 8 SPIQAGEKRVN-VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
SPI R+ ++ +L + P++Y WE Y A + W EV + D
Sbjct: 9 SPIVDDGSRIKAPKEEPILADNPQRFCMFPIRYPRVWEMYKKAEASFWTAEEVDLSQDAK 68
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W+S LTD+E+ + L FFA+S+ +V N+ + + + PE R + Q E +
Sbjct: 69 HWES---LTDNEKHFVSHVLAFFAASDGIVLENLAVRFMKEIQIPEARAFYGFQIAIENI 125
Query: 127 HSHTFQYIITSLGLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
HS + ++ + D +LFN +P + KA+WAL++ + S
Sbjct: 126 HSEMYSLLLETYIKDNEVKAKLFNAIETIPCVAKKADWALRWIDSSQS------------ 173
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ V + EG++F F I L + M G+ + I RDE LH +F + +
Sbjct: 174 --FAERIVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 231
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ ++ +++ + ++ +A +E + E + VG+NA QY+ F+A+R
Sbjct: 232 LLNVKLD-------EKRVKEIVSDAVEIERQFVCEALSCDLVGMNARLMSQYIDFVADRL 284
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+G LF NPF WM +I L+ + NFFE RV EYQ+ + +
Sbjct: 285 MVVLGYNKLFN-AINPFDWMD-LISLQGKTNFFEKRVGEYQKASVM 328
>gi|322491821|emb|CBZ27094.1| ribonucleoside-diphosphate reductase small chain,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 392
Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats.
Identities = 92/352 (26%), Positives = 159/352 (45%), Gaps = 28/352 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A + P+ + N +++ + L P++Y W KY + W E+ +
Sbjct: 52 APGAEVLPVDKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 111
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
+D+ W L D ER IK L FFA S+ +V N+ + PE R + Q
Sbjct: 112 GNDMKDW---AALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQL 168
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS T+ ++ + D E L + + +P I KA WA+++ +
Sbjct: 169 MMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIGS---------- 218
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
F + L F V EG++F F + L + M G+ + I RDE LH +F
Sbjct: 219 ---SASFQERLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFA 274
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ N H+ K +++ ++ +A +E + + +P +G+NA QY++F
Sbjct: 275 CLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEF 328
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+A+R +G E + T+ PF +M E+I L+ + NFFE +V EYQ+ +
Sbjct: 329 VADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 378
>gi|297831106|ref|XP_002883435.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata]
gi|297329275|gb|EFH59694.1| RNR2/RNR2A [Arabidopsis lyrata subsp. lyrata]
Length = 341
Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats.
Identities = 99/348 (28%), Positives = 160/348 (45%), Gaps = 29/348 (8%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
L Q + + + +L A++ + P++Y WE Y A + W EV + D+
Sbjct: 3 SLKESQRRDMDEDESKEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDV 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
W+ LTD E+ I L FFA+S+ +V N+ + PE R + Q E
Sbjct: 63 QQWE---ALTDSEKHFISHVLAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMEN 119
Query: 126 VHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
+HS + ++ + D E LFN +P I+ KA W L + Q+
Sbjct: 120 IHSEMYSLLLETFLKDSKEKDRLFNAIETIPCISKKAKWCLDWIQS-------------P 166
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
F L + EG++F F I L + M G+ + I RDE LH +F +
Sbjct: 167 MSFAVRLVA-FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 225
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+ ++ + P +K ++HEA +E + + +P +G+N+ QY+QF+A+R
Sbjct: 226 SLLQKQLPL-------EKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADR 278
Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+G E +K ENPF WM E I L+ + NFFE RV EYQ+ + +
Sbjct: 279 LLVTLGCERRYK-AENPFDWM-EFISLQGKTNFFEKRVGEYQKASVMS 324
>gi|224048725|ref|XP_002196356.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Taeniopygia
guttata]
Length = 390
Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats.
Identities = 91/339 (26%), Positives = 157/339 (46%), Gaps = 28/339 (8%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+R +++ +L + P++Y W+ Y A + W EV + DL W+S L
Sbjct: 64 ERPGTEEEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWES---L 120
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
+E+ I L FFA+S+ +V N+V + + E R + Q E +HS + +
Sbjct: 121 KPEEKYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLL 180
Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
I + D E LFN +P + KA+WA+ + + + V
Sbjct: 181 IDTYIKDSKEREFLFNAIETLPCVKKKADWAMCWIG-------------DKKATYGERVV 227
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
+ EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 228 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL------ 281
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
K +++ + ++ A L+E + E +P +G+N +QY++F+A+R ++G
Sbjct: 282 -IHKPSEERVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNK 340
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++K ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 341 IYK-AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 377
>gi|302833193|ref|XP_002948160.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f.
nagariensis]
gi|300266380|gb|EFJ50567.1| hypothetical protein VOLCADRAFT_101784 [Volvox carteri f.
nagariensis]
Length = 354
Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats.
Identities = 95/335 (28%), Positives = 152/335 (45%), Gaps = 28/335 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
D+ +L + L P++Y WE Y A + W EV DL + L ++ER
Sbjct: 24 DEAVLRENPNRFTLFPIRYPDLWEFYKRAVASFWTVEEVDFTGDLYDFDH--KLKEEERR 81
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFA+S+ +V N+ + PE R + Q E VHS + ++
Sbjct: 82 FIKYVLAFFAASDGIVMENLSARFMSEVQVPEARAFYGFQIAMENVHSEMYSVLLDHYVR 141
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LFN + + ++ KA+WAL++ + +S + V + E
Sbjct: 142 DPAERRQLFNAIQTIATVGKKADWALRWISSSNS--------------FAERLVAFACVE 187
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G+ F F I L + M G++ I RDE LH +F + +K
Sbjct: 188 GIHFSGSFCAIFWLKKRLLMPGLSFSNCLISRDEGLHCDFACCLYGHLKNRLS------- 240
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+++ ++ EA LE + E + +G+NA QY++F+A+R +G + + T
Sbjct: 241 RERVVKIVDEAVRLEDEFCTEALSCELLGMNADLMRQYIRFVADRLLVSLGYDKYYN-TV 299
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NPF WM E+I L+ + NFFE RV EYQ+ + D
Sbjct: 300 NPFDWM-EMISLQGKANFFERRVGEYQRACVMAGD 333
>gi|158286793|ref|XP_308927.4| AGAP006818-PA [Anopheles gambiae str. PEST]
gi|157020637|gb|EAA04227.4| AGAP006818-PA [Anopheles gambiae str. PEST]
Length = 400
Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats.
Identities = 89/340 (26%), Positives = 155/340 (45%), Gaps = 28/340 (8%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + +L + P++Y W+ Y A + W EV + D+ W++
Sbjct: 72 ESAPFDPSIEPLLRDNPRRFVIFPIQYPDIWQMYKKAEASFWTVEEVDLSKDMKDWET-- 129
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L ER I L FFA+S+ +V N+V + + E R + Q E VHS +
Sbjct: 130 -LKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYS 188
Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
+I + D E LFN +P + KA+WAL + + + +
Sbjct: 189 LLIDTYIRDSKEREFLFNAIETLPCVKRKADWALNWISS-------------KKANFGER 235
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 236 VVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKYLVQ-- 293
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
K +++ ++ +A L+E + + +P +G+N QY++F+A+R ++G
Sbjct: 294 -----KPSKERVTEIIRDAVLIEQEFLTKALPVDMLGMNCDLMSQYIEFVADRLLLELGC 348
Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
E ++ +T+NPF +M E I L+ + NFFE +V EYQ+ +
Sbjct: 349 EKIY-HTKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 386
>gi|145349720|ref|XP_001419276.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579507|gb|ABO97569.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 329
Score = 265 bits (676), Expect = 8e-69, Method: Composition-based stats.
Identities = 90/332 (27%), Positives = 153/332 (46%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ + P++Y WE Y A + W EV + DD+ W++ LT DE+
Sbjct: 8 EPLLDENDQRFTMFPIQYPQVWEMYKKAEASFWTAEEVDLSDDMKHWET---LTKDEKHF 64
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
+ L FFA+S+ +V N+ + + PE R + Q E +HS + +I D
Sbjct: 65 VSHVLAFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENIHSEMYSLLIDQYIKD 124
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LF +P + KA+WAL++ + S + + + EG
Sbjct: 125 PVEKDHLFRAIDTIPCVKKKADWALKWIDSSDS--------------FAERLLAFACIEG 170
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE LH +F + + + K +
Sbjct: 171 IFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLFSMLNN-------KPSE 223
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R ++ EA +E + +++P VG+NA Y++++A+ +GL + T N
Sbjct: 224 ETIRKIVTEAVEIEKEFVCDSLPCALVGMNAGMMSDYIEYVADHLFCSLGLAKEYN-TTN 282
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 283 PFDWM-ELISLQGKTNFFEKRVGEYQKAGVMN 313
>gi|149637725|ref|XP_001508783.1| PREDICTED: similar to Ribonucleotide reductase M2 B (TP53
inducible) [Ornithorhynchus anatinus]
Length = 401
Score = 265 bits (676), Expect = 8e-69, Method: Composition-based stats.
Identities = 95/343 (27%), Positives = 162/343 (47%), Gaps = 28/343 (8%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
+ E + ++ +L S + P++Y W+ Y A + W EV + DL W
Sbjct: 71 EPTENGLQPCEEPLLRKSSRRFVIFPIQYPEIWKMYKQAQASFWTAEEVDLSKDLPHW-- 128
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
N L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS
Sbjct: 129 -NKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 187
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I + D + LFN +P + KA+W+L++ Q
Sbjct: 188 YSLLIDTYIKDPKKREFLFNAIETMPFVKKKADWSLRWIA-------------DRQSTFG 234
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+ V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 235 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVK 294
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
K + K + ++ +A +E + E +P G +G+N +QY++F+A+R ++
Sbjct: 295 -------KPSEDKVKEIIIDAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLVEL 347
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
G +F +++NPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 348 GFSKVF-HSDNPFDFM-ENISLEGKTNFFEKRVSEYQRFAVMS 388
>gi|294890631|ref|XP_002773236.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239878288|gb|EER05052.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 350
Score = 265 bits (676), Expect = 9e-69, Method: Composition-based stats.
Identities = 93/332 (28%), Positives = 152/332 (45%), Gaps = 28/332 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ +L + P+KY WE Y + W E+ + DL W+ L+D++R
Sbjct: 14 KEDLLKENPHRYVMFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWE---NLSDNDRH 70
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I +
Sbjct: 71 FISHVLAFFAASDGIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIK 130
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E +F VPS+ KA WAL + D F + L + E
Sbjct: 131 DPAEKDKIFRAIETVPSVRKKAEWALSWIN-------------DDNCFSERLIA-FACVE 176
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G+ F F I L + M G+ + I RDE LH +F + N + +T+
Sbjct: 177 GILFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHADFACLLYNMM------HYTRLP 230
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
++ ++ A +E + E++P +G+N+ +Y++F+A+R +G L+ T
Sbjct: 231 DERVHEIVRGAVDVERVFISESLPVSLIGMNSQLMCRYIEFVADRLLVALGHPKLYNAT- 289
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF WM ++I L+ + NFFE RV EYQ+G +
Sbjct: 290 NPFDWM-KMISLQGKTNFFEKRVGEYQKGGVM 320
>gi|156386903|ref|XP_001634150.1| predicted protein [Nematostella vectensis]
gi|156221230|gb|EDO42087.1| predicted protein [Nematostella vectensis]
Length = 384
Score = 265 bits (676), Expect = 9e-69, Method: Composition-based stats.
Identities = 92/343 (26%), Positives = 157/343 (45%), Gaps = 28/343 (8%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
+ R N +D+ +L +LP++Y W+ Y A + W EV + D +
Sbjct: 54 SRAKSRFNTEDEPLLRENPHRFVILPIQYPEIWQMYKKAEASFWTAEEVDLSKDSHDF-- 111
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
L DDER+ + L FFA+S+ +V N+V + + PE R + Q E +HS
Sbjct: 112 -AKLNDDERMFVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEM 170
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I SL D+ E LFN +P + KA+WAL + +
Sbjct: 171 YSLLIESLIKDKAEKVNLFNAIETMPCVMKKAHWALNWIN-------------PQRASFG 217
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+ + + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 218 ERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMYKYLVN 277
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
K ++ R ++ +A ++E + +P +G+N QY++F+A+R +
Sbjct: 278 -------KPDEETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVAL 330
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ ++ ENPF +M E I L+ + NF+E RV EYQ+ +
Sbjct: 331 NCQKVYNV-ENPFDFM-ENISLEGKTNFYEKRVGEYQKSGVMS 371
>gi|301774462|ref|XP_002922647.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
[Ailuropoda melanoleuca]
Length = 387
Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats.
Identities = 98/339 (28%), Positives = 159/339 (46%), Gaps = 28/339 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E D++ +L S + P++Y W+ Y A + W EV + DL W N
Sbjct: 60 ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 116
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS +
Sbjct: 117 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 176
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D + LFN +P + KA+WAL++ + + +
Sbjct: 177 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIE-------------DRKSTFGERV 223
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 224 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 280
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G
Sbjct: 281 ----KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVELGFS 336
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+F ENPF +M E I L+ + NFFE RV EYQ+ A +
Sbjct: 337 KVF-QAENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 373
>gi|195436539|ref|XP_002066225.1| GK22247 [Drosophila willistoni]
gi|194162310|gb|EDW77211.1| GK22247 [Drosophila willistoni]
Length = 395
Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats.
Identities = 88/335 (26%), Positives = 154/335 (45%), Gaps = 28/335 (8%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ + +L + P++Y W+ Y A + W EV + DL W LTD+
Sbjct: 72 DPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW---ARLTDN 128
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
ER I L FFA+S+ +V N+V + + E R + Q E VHS + +I +
Sbjct: 129 ERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSEMYSILIDT 188
Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
D E LFN +P++ KA+WAL + + + + +
Sbjct: 189 YIRDPQERDYLFNAVETMPAVKRKADWALSWISS-------------KAANFGERIIAFA 235
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 236 AVEGIFFSGSFASIFWLKKRGLMPGLTFSNEMISRDEGLHCDFAVLMFQHLVQ------- 288
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
+ +++ ++ +A +E + +P +G+N QY++F+A+R ++G+ ++
Sbjct: 289 RPSRERIIEIIRDAVQIEQEFLTVALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN 348
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
T+NPF +M E+I L + NFFE +V EYQ+ +
Sbjct: 349 -TKNPFSFM-EMISLDGKTNFFEKKVGEYQRMGVV 381
>gi|256421019|ref|YP_003121672.1| ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM
2588]
gi|256035927|gb|ACU59471.1| Ribonucleoside-diphosphate reductase [Chitinophaga pinensis DSM
2588]
Length = 323
Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats.
Identities = 94/337 (27%), Positives = 161/337 (47%), Gaps = 30/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+N++++ +L D LLP+ Y WEKY + W E+ + D+ W N L D
Sbjct: 1 MNLENELLLKENKDRFVLLPINYPKVWEKYKQHEASFWTAEEIDLSADMKDW---NNLND 57
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
ER I L FFA+S+ +V N+ + + PE R + Q E +HS T+ +I
Sbjct: 58 GERHFITHVLAFFAASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLID 117
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LF+ VP++T KA WAL++ + + + V +
Sbjct: 118 TYVKDPVEKDRLFHAIETVPAVTKKAKWALRWIENGN---------------FAERLVAF 162
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F F I L + M G+ + I RDE LH F + ++ P
Sbjct: 163 AAVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLYGMLENRLP--- 219
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+++ T++ +A +E + + +P +G+N+ +Y++F+A+R ++G +F
Sbjct: 220 ----EEQVHTIIRDAVAIEKEFITDALPVALIGMNSKLMSEYIEFVADRWLSELGYTKIF 275
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
T NPF +M E+I L+ + NFFE RV +YQ+ +
Sbjct: 276 N-TANPFDFM-EMISLQGKTNFFEKRVGDYQKAGVMS 310
>gi|323450429|gb|EGB06310.1| hypothetical protein AURANDRAFT_65685 [Aureococcus anophagefferens]
Length = 349
Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats.
Identities = 84/331 (25%), Positives = 149/331 (45%), Gaps = 27/331 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L L P+++ W+ Y A + W E+ + D+ W L D ER
Sbjct: 29 EPLLTEDPHRFVLFPIEHDDVWQMYKKAEASFWTAEEIDLCHDIKDWDQ--KLNDKERHF 86
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 87 IKHVLAFFAASDGIVNENLAQNFATEVQWAEARCFYGFQIAIENIHSEVYSLLIDTYIRD 146
Query: 142 ---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E +P +T KA WAL++ D D+ + + + EG
Sbjct: 147 AKEKHECLTAIDTMPCVTKKAQWALRW-------------CDPDRASFAERIIAFAAVEG 193
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F + L + M G++ + I RDE +H +F + ++++ + P
Sbjct: 194 IFFSGSFCAVFWLKKRGLMPGLSFSNELISRDEGMHCDFACLLYSKLRNKLPV------- 246
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ ++ +A +E + +P +G+N+ + QY++F A+R +G L++ T N
Sbjct: 247 ETINALIGDAVTIEKEFVVSALPVELIGMNSRTMCQYIEFCADRLLLALGCPKLYEAT-N 305
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
PF WM E+I L+ + NFFE RV EY +
Sbjct: 306 PFDWM-ELISLQGKTNFFEKRVGEYAKSGVG 335
>gi|20178418|ref|NP_619839.1| CPXV051 protein [Cowpox virus]
gi|20153036|gb|AAM13497.1|AF482758_48 CPXV051 protein [Cowpox virus]
Length = 333
Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats.
Identities = 89/337 (26%), Positives = 153/337 (45%), Gaps = 29/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
VN+ + +L + + P++Y W Y A + W EV + D+ W N LT
Sbjct: 11 VNLVMEPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+E+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I
Sbjct: 68 NEKHFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLID 127
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LFN +P + KA+WA ++ +S + V +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSASYG--------------ERLVAF 173
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL------- 226
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
++ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++
Sbjct: 227 HPPSEETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIY 286
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
T NPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 287 NVT-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321
>gi|330804590|ref|XP_003290276.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum]
gi|325079602|gb|EGC33194.1| hypothetical protein DICPUDRAFT_56591 [Dictyostelium purpureum]
Length = 335
Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats.
Identities = 91/334 (27%), Positives = 153/334 (45%), Gaps = 28/334 (8%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ ++ +L D L P+KY W Y A + W E+ + DL W S L D+
Sbjct: 3 QIIEEPILKENKDRFVLFPIKYPDIWSMYKQAEASFWTAEEIDLAPDLNDWSS--KLNDN 60
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
ER I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I +
Sbjct: 61 ERHFISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDT 120
Query: 138 LG---LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ +LFN +P I KA+WAL++ S + V +
Sbjct: 121 YIKDNEQKSKLFNAIDTIPCIKKKADWALKWINNSDS--------------FAERLVAFA 166
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
EG++F F I L + M G+ + I RDE LH NF + ++ +
Sbjct: 167 AVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCNFACLLYTKLINKLES--- 223
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
+ ++ +A + E + +++P +G+N+ S QY++F A+R +G + ++
Sbjct: 224 ----KTLEAIIRDAVVCEKEFICDSLPVDLIGMNSRSMSQYIEFCADRLLVSLGYKKIYN 279
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+ NPF WM E+I L+++ NFFE +V EY +
Sbjct: 280 AS-NPFDWM-EMISLQRKTNFFEGKVAEYAKTGV 311
>gi|83649535|ref|YP_437970.1| ribonucleotide reductase subunit beta [Hahella chejuensis KCTC
2396]
gi|83637578|gb|ABC33545.1| Ribonucleotide reductase, beta subunit [Hahella chejuensis KCTC
2396]
Length = 405
Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats.
Identities = 133/344 (38%), Positives = 189/344 (54%), Gaps = 5/344 (1%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
+ VN DDKR++N +D+NQL P KY WAWE +L+A NHW P ++ M D+
Sbjct: 67 EEVPQKLDPVNPDDKRVVNGMTDINQLAPFKYPWAWEFFLNANKNHWTPLDINMSQDVYD 126
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
+ LT +E+ + + L + +S+ L NI LA+ +S PE + Y RQ +EE++H
Sbjct: 127 YHH--KLTLEEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEESLH 184
Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ T+Q+ I ++GLD+ E++N YR P+I K + L P +D + F+
Sbjct: 185 TWTYQHCIETIGLDQSEIYNRYRVTPAIYRKIKMGNERISALLRPDINLRNRDDLETFVM 244
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
F +FEG WFY GF+ I +L R M G EQ QYIMRDE +H FGI V+ QI
Sbjct: 245 AYIFFAGIFEGCWFYNGFSPIFALQRRGLMKGTGEQLQYIMRDEVMHCAFGIRVVKQIIK 304
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
E + +T+ EA E YAH + + +G A + +FIANRR Q+
Sbjct: 305 EEGVTLDP---KAIKTLWEEAEAAETGYAHFLLKEPILGYTAEDHIEQFRFIANRRAKQL 361
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
L+ F N PW+ E ++KEKNFFETRVTEYQ GA L+W
Sbjct: 362 KLDEPFPGAGNALPWLDEQASMRKEKNFFETRVTEYQTGASLQW 405
>gi|256081213|ref|XP_002576867.1| ribonucleoside-diphosphate reductase small chain [Schistosoma
mansoni]
gi|238662153|emb|CAZ33104.1| ribonucleoside-diphosphate reductase small chain, putative
[Schistosoma mansoni]
Length = 365
Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats.
Identities = 96/338 (28%), Positives = 159/338 (47%), Gaps = 28/338 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ ++ + +L L P++Y W Y A + W EV + D W+S L
Sbjct: 37 KSEIELEPLLKPNPHRFVLFPIEYHDVWHFYKKAVASFWTVEEVDLSKDFIHWES---LK 93
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
ER I L FFA+S+ +V N++ + + PE R + Q E +HS + +I
Sbjct: 94 VGERHFISYVLAFFAASDGIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLLI 153
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E LFN + + KA WAL + D+ F + L F
Sbjct: 154 DTYIKDSKERDFLFNAISNLTCVAKKAQWALDWI------------GDSKSTFAERLVAF 201
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
V EG++F FA I L + M G++ + I RDE LH +F + I + P
Sbjct: 202 AAV-EGVFFSGSFAAIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLFKHIIKKPP-- 258
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+++ +++ EA L+E + E +P +G+N QY++FIA+R ++G E +
Sbjct: 259 -----KERVESIIREAVLIEQEFLSEALPVSLIGMNCKLMCQYIEFIADRLLVELGYEKM 313
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ +++NPF +M E I ++ + NFFE RV EYQ+ +
Sbjct: 314 Y-HSDNPFDFM-ENISIEGKTNFFEKRVGEYQRAGVMS 349
>gi|18859327|ref|NP_571525.1| ribonucleoside-diphosphate reductase subunit M2 [Danio rerio]
gi|292624782|ref|XP_002665783.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Danio rerio]
gi|3914657|sp|P79733|RIR2_DANRE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2;
AltName: Full=Ribonucleotide reductase protein R2 class
I; AltName: Full=Ribonucleotide reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|1695831|gb|AAB37103.1| ribonucleotide reductase protein R2 class I [Danio rerio]
gi|27881838|gb|AAH44355.1| Ribonucleotide reductase M2 polypeptide [Danio rerio]
gi|56207929|emb|CAI21240.1| ribonucleotide reductase M2 polypeptide [Danio rerio]
gi|182889152|gb|AAI64707.1| Rrm2 protein [Danio rerio]
Length = 386
Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats.
Identities = 91/341 (26%), Positives = 156/341 (45%), Gaps = 28/341 (8%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
K+ V+++ +L + P++Y W+ Y A + W EV + DL W +
Sbjct: 58 KAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHW---D 114
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D+ER I L FFA+S+ +V N+V + + E R + Q E +HS +
Sbjct: 115 SLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYS 174
Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
+I + D E LFN +P + KA+WAL + +
Sbjct: 175 LLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWIG-------------DKNARYGER 221
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 222 VVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLIN-- 279
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
K ++ + ++ A +E + + +P +G+N +QY++F+A+R ++G
Sbjct: 280 -----KPSEETVKKIIMNAVEIEQEFLTDALPVKLIGMNCDLMKQYIEFVADRLLLELGF 334
Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ +++ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 335 DKVYRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 373
>gi|49899161|gb|AAH75746.1| Ribonucleotide reductase M2 polypeptide [Danio rerio]
Length = 386
Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats.
Identities = 91/341 (26%), Positives = 157/341 (46%), Gaps = 28/341 (8%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
K+ V+++ +L + P++Y W+ Y A + W EV + DL W +
Sbjct: 58 KAKKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHW---D 114
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D+ER I L FFA+S+ +V N+V + + E R + Q E +HS +
Sbjct: 115 SLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYS 174
Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
+I + D E LFN +P + KA+WAL + +
Sbjct: 175 LLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWIG-------------DKNARYGER 221
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 222 VVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHL---- 277
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
+K ++ + ++ A +E + + +P +G+N +QY++F+A+R ++G
Sbjct: 278 ---ISKPSEETVKKIIMNAVEIEQEFLTDALPVKLIGMNCDLMKQYIEFVADRLLLELGF 334
Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ +++ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 335 DKVYRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 373
>gi|195401438|ref|XP_002059320.1| GJ18335 [Drosophila virilis]
gi|194142326|gb|EDW58732.1| GJ18335 [Drosophila virilis]
Length = 394
Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats.
Identities = 87/344 (25%), Positives = 157/344 (45%), Gaps = 28/344 (8%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++ + + + +L + P++Y W+ Y A + W EV + DL W
Sbjct: 63 MEKIAAQFDPTVEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDW- 121
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
LTD+ER I L FFA+S+ +V N+V + + E R + Q E VHS
Sbjct: 122 --ARLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 179
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
+ +I + D + LFN +P++ KA+WAL + +
Sbjct: 180 MYSVLIDTYIRDPHQRDYLFNAIETMPAVKRKADWALSWISS-------------KAANF 226
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 227 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLV 286
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ +++ ++ +A +E + + +P +G+N +Y++F+A+R +
Sbjct: 287 Q-------RPCRERIIEIISDAVTIEQEFLTDALPVNLIGMNCALMSEYIEFVADRLLVE 339
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+G+ L+ T+NPF +M E+I L + NFFE +V EYQ+
Sbjct: 340 LGVGKLYN-TKNPFTFM-EMISLDGKTNFFEKKVGEYQRMGVTS 381
>gi|154337607|ref|XP_001565036.1| ribonucleoside-diphosphate reductase small chain [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134062075|emb|CAM45178.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 392
Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats.
Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 28/340 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+ N +++ + L P++Y W KY + W E+ + +D+ W
Sbjct: 64 AEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDW---VA 120
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L D ER IK L FFA S+ +V N+ + PE R + Q E +HS T+
Sbjct: 121 LNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSV 180
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
++ + D E L + + +P I KA WA+++ + F + L
Sbjct: 181 LLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGS-------------SASFQERLI 227
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
F V EG++F F + L + M G+ + I RDE LH +F + N
Sbjct: 228 GFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------NS 280
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
H+ K +++ ++ +A +E + + +P +G+NA QY++F+A+R +G E
Sbjct: 281 HIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEE 340
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ T+ PF +M E+I L+ + NFFE +V EYQ+ +
Sbjct: 341 KHYNATQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 378
>gi|291244313|ref|XP_002742041.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
[Saccoglossus kowalevskii]
Length = 463
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 91/344 (26%), Positives = 162/344 (47%), Gaps = 28/344 (8%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
+ + ++ +L D + P+KY W+ Y A + W EV + DL W
Sbjct: 131 LTQATTKDLEAEETLLKPNIDRFVVFPIKYQDIWKYYKKAQASFWTVEEVDLGKDLPDW- 189
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
L ++ER I L FFA+S+ +V N+V + + E R + Q E VHS
Sbjct: 190 --VKLKEEERRFISHVLAFFAASDGIVLENLVQRFSQEVQVAEARCFYGFQIAMENVHSE 247
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
+ +I + ++ E LF+ +P + KA+WA+++ Q+ + F
Sbjct: 248 MYSLLIDAYIKEQEEKTRLFHAIDNMPCVKKKADWAIEWIQS------------EESSFG 295
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ L F V EG++F FA I + + G+ + I RDE LH +F + + +
Sbjct: 296 ERLVAFAAV-EGIFFSGAFASIFWFKKRGLLPGLTFSNELISRDEGLHCDFACLIFSHLT 354
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
K +++ R ++ +A +E + +E +P G +G+N Y++F+A+R +
Sbjct: 355 -------YKPSKERIRNIITQAVDIEKEFWNEALPVGLIGMNVTLMNYYVEFVADRLLLE 407
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ + ++ + ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 408 LNCDKVY-HRENPFDFM-ENISLEGKTNFFEKRVGEYQKANVMS 449
>gi|223996990|ref|XP_002288168.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975276|gb|EED93604.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 157/351 (44%), Gaps = 30/351 (8%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+S + E ++ +L L P+K W+ Y A + W E+ + +DL
Sbjct: 1 MSDHRRAESEGRHAEEPLLKENPGRFVLFPIKEPEIWKMYKKAEASFWTAEEIDLAEDLK 60
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W+S L+ +ER + L FFA+S+ +V N+ +++ E R + Q E +
Sbjct: 61 DWES---LSINERHFVSHVLAFFAASDGIVNENLTGNFSTEVTSAEARCFYGFQIAVENI 117
Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
HS T+ +I + D E L N VP + KANWAL++ +
Sbjct: 118 HSETYSLLIDTYIKDAQEKDHLLNAIETVPCVQKKANWALRWCDA------------GNA 165
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
F + F V EG++F F I L + M G+ + I RDE LH +F + +
Sbjct: 166 SFAERCIAFAAV-EGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHCDFACLIYS 224
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
++ + P + + ++ A +E + + +P +G+N+ QY++F A+R
Sbjct: 225 KLVNQLP-------ESRIEEIITNAVEIEKEFVSDALPVELIGMNSKLMCQYIEFCADRL 277
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL--KWD 352
+G + + NPF WM E+I L+ + NFFE RV EY + K D
Sbjct: 278 LGALGCKKHY-MAVNPFEWM-EMISLQGKTNFFEKRVGEYAKSGVGVNKDD 326
>gi|302678465|ref|XP_003028915.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8]
gi|300102604|gb|EFI94012.1| hypothetical protein SCHCODRAFT_83117 [Schizophyllum commune H4-8]
Length = 331
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 92/333 (27%), Positives = 154/333 (46%), Gaps = 27/333 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
++ +L L P++Y W+ Y A + W E+ + DL W+ N + D+E
Sbjct: 4 ASEEPLLKESIRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWQ--NRMNDNE 61
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N++ + PE R + Q E +HS T+ +I +
Sbjct: 62 RHFISHVLAFFAASDGIVNENLLERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTY 121
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
+ E LFN +P + KA WAL++ D F L F V
Sbjct: 122 IREAAEREHLFNAVETIPCVARKAQWALRWIN------------DDRSSFGIRLVAFAAV 169
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + M G+ + I RDE +H +F + ++ +
Sbjct: 170 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELITRDEGMHTDFACLLFAHLRR-------R 221
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
R ++ EA +E + + +P +G+N+ QY++F+A+R +G E ++
Sbjct: 222 PHPDVVRRIIMEAVTIEQEFLTDALPVSLIGMNSTLMCQYIEFVADRLLVALGNEKVYNV 281
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
T NPF +M +I L+ + NFFE RV++Y+ A
Sbjct: 282 T-NPFDFMD-MISLQGKTNFFEKRVSDYKMAAV 312
>gi|15229476|ref|NP_189000.1| RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate
reductase [Arabidopsis thaliana]
gi|27735240|sp|P50651|RIR2A_ARATH RecName: Full=Ribonucleoside-diphosphate reductase small chain A;
AltName: Full=Ribonucleoside-diphosphate reductase R2A
subunit; Short=AtRNR2; Short=Protein R2at; AltName:
Full=Ribonucleotide reductase small subunit A
gi|13937232|gb|AAK50108.1|AF372971_1 AT3g23580/MDB19_7 [Arabidopsis thaliana]
gi|9294514|dbj|BAB02776.1| ribonucleotide reductase [Arabidopsis thaliana]
gi|23505945|gb|AAN28832.1| At3g23580/MDB19_7 [Arabidopsis thaliana]
gi|332643258|gb|AEE76779.1| Ribonucleoside-diphosphate reductase small chain A [Arabidopsis
thaliana]
Length = 341
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 97/334 (29%), Positives = 157/334 (47%), Gaps = 29/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +L A++ + P++Y WE Y A + W EV + D+ W+ LTD E+
Sbjct: 17 SEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWE---ALTDSEK 73
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I L FFA+S+ +V N+ + PE R + Q E +HS + ++ +
Sbjct: 74 HFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFI 133
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I+ KA W L + Q+ F L +
Sbjct: 134 KDSKEKDRLFNAIETIPCISKKAKWCLDWIQS-------------PMSFAVRLVA-FACV 179
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F F I L + M G+ + I RDE LH +F + + ++ + P
Sbjct: 180 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLPL----- 234
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+K ++HEA +E + + +P +G+N+ QY+QF+A+R +G E +K
Sbjct: 235 --EKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADRLLVTLGCERTYK-A 291
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF WM E I L+ + NFFE RV EYQ+ + +
Sbjct: 292 ENPFDWM-EFISLQGKTNFFEKRVGEYQKASVMS 324
>gi|79160106|gb|AAI08038.1| Rrm2b protein [Danio rerio]
Length = 349
Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats.
Identities = 106/352 (30%), Positives = 167/352 (47%), Gaps = 31/352 (8%)
Query: 5 TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
T ++ Q G K V+ V+D+ +L + P++Y W+ Y A + W EV +
Sbjct: 10 TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DL W +GL +E+ I L FFA+S+ +V N+V + + PE R + Q
Sbjct: 70 SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E VHS + +I + D E LFN + +P + KA+WALQ+
Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWI------------ 174
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D + F + L F V EG++F FA I L R M G+ + I RDE LH NF
Sbjct: 175 SDTNSTFGERLVAFAAV-EGIFFSGSFAAIYWLKRRGLMPGLTYSNELISRDEGLHCNFA 233
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + + K + ++ +A +E + E +P +G+N +QY++F
Sbjct: 234 CLMYSYLVK-------KPSVDRVNDIIAKAVSIEQEFLTEALPVNLIGMNCSLMKQYIEF 286
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+A+R +GL + +ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 287 VADRLLTDLGLPKAY-CSENPFDFM-ESISLEGKTNFFEKRVAEYQRLGVMS 336
>gi|146090952|ref|XP_001466403.1| ribonucleoside-diphosphate reductase small chain [Leishmania
infantum JPCM5]
gi|321399462|emb|CBZ08664.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania infantum JPCM5]
Length = 392
Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats.
Identities = 95/361 (26%), Positives = 164/361 (45%), Gaps = 37/361 (10%)
Query: 2 ANNTGLSPIQAGE---------KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNN 52
A + + P+ AG K N +++ + L P++Y W KY +
Sbjct: 43 AEDLVMKPVAAGTEVLTADKVAKGTNAEEEPLQQENPLRYVLFPIQYHDIWRKYKEQESC 102
Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
W E+ + +D+ W + L D ER IK L FFA S+ +V N+ + PE
Sbjct: 103 IWTVEEIDLGNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPE 159
Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTL 169
R + Q E +HS T+ ++ + D E L + + +P I KA WA+++ +
Sbjct: 160 ARAFYGFQLMMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGS- 218
Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
F + L F V EG++F F + L + M G+ + I R
Sbjct: 219 ------------SASFQERLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISR 265
Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
DE LH +F + N H+ K +++ ++ +A +E + + +P +G+NA
Sbjct: 266 DEGLHTDFACLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNA 319
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
QY++F+A+R +G E ++ T+ PF +M E+I L+ + NFFE +V EYQ+ +
Sbjct: 320 ELMAQYIEFVADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVM 377
Query: 350 K 350
Sbjct: 378 S 378
>gi|326797773|ref|YP_004315592.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
gi|326548537|gb|ADZ76922.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
Length = 323
Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats.
Identities = 89/335 (26%), Positives = 156/335 (46%), Gaps = 30/335 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
++ +++ +L D +LP+ Y W+ Y + W E+ + DL W L D
Sbjct: 1 MSQENEVLLRENKDRFVILPINYPAIWDMYKKHEASFWTAEEIDLSGDLKDW---ANLND 57
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
ER I L FFA+S+ +V N+ + + PE R + Q E +HS T+ +I
Sbjct: 58 GERHFISHVLAFFAASDGIVNENLAINFMSEVQLPEARSFYGFQIAMENIHSETYALLID 117
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LF+ V + KA WAL++ + S + V +
Sbjct: 118 TYVKDPVEKDRLFHAIETVECVKKKAEWALRWIENGS---------------FAERLVAF 162
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F F I L + M G+ + I RDE LH F + + ++ + P
Sbjct: 163 AAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLYSMLEAKLP--- 219
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+++ + ++ +A +E + + +P +G+NA +QY++F+A+R ++G +
Sbjct: 220 ----KERVQEIIIDAVEIEKEFITDALPVKLIGMNADLMKQYIEFVADRWLVELGNSKYY 275
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
T NPF +M E+I L+ + NFFE RV +YQ+
Sbjct: 276 NAT-NPFDFM-ELISLQGKTNFFEKRVGDYQKSGV 308
>gi|2465173|emb|CAA71741.1| ribonucleotide reductase (Class I) [Trypanosoma brucei brucei]
Length = 337
Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats.
Identities = 91/333 (27%), Positives = 158/333 (47%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER
Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + +
Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E L + R +P I KA WA+++ + +S F L F V E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAAV-E 178
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + + K
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY------IVNKLP 232
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M +I L+ + NFFE +V EYQ+ +
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323
>gi|156087150|ref|XP_001610982.1| ribonucleoside-diphosphate reductase small subunit [Babesia bovis
T2Bo]
gi|154798235|gb|EDO07414.1| ribonucleoside-diphosphate reductase small subunit, putative
[Babesia bovis]
Length = 339
Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats.
Identities = 98/333 (29%), Positives = 164/333 (49%), Gaps = 29/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +L + N L P+KY WE Y A + W E+ + DL W + LT+ E
Sbjct: 19 SEEFILVEDPNRNGLYPIKYPDFWEWYKKAQASFWTSEEIDLSSDLKDWGT---LTEGEH 75
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
IK L FFA+S+ +V N+ L + + PE + + Q E +HS T+ +I
Sbjct: 76 HFIKNVLAFFAASDGIVLENLALRFLKDVKLPEAKFFYCFQITVENIHSETYSLLIEQYI 135
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
DE E LF + ++ KA WA ++ D++ + V Y
Sbjct: 136 RDEAEKDRLFRAIETIDAVRDKAIWAAKWMN--------------DEKSFAERIVAYAAV 181
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F F I L + M G+ + I RDE LH +FG + +++K + P
Sbjct: 182 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYSKLKHKLPA----- 236
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ + ++ EA +E + +++P +G+N+ QY++F+A+R +G+ P++K T
Sbjct: 237 --ECVQQIIKEAVAVERVFVCDSLPTDLIGMNSMLMAQYIEFVADRLLQALGVPPVYK-T 293
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+NPF WM E+I ++ + NFFE RV EYQ+ L
Sbjct: 294 KNPFEWM-ELISVQGKTNFFEKRVGEYQKSGIL 325
>gi|157126966|ref|XP_001654749.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti]
gi|15638625|gb|AAL05057.1|AF411297_1 ribonucleotide reductase 2 [Aedes aegypti]
gi|82469974|gb|ABB77235.1| ribonucleotide reductase small subunit R2 [Aedes aegypti]
gi|108873070|gb|EAT37295.1| ribonucleoside-diphosphate reductase small chain [Aedes aegypti]
Length = 397
Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats.
Identities = 93/352 (26%), Positives = 161/352 (45%), Gaps = 28/352 (7%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+A N + + + + + +L + P++Y W+ Y A + W EV
Sbjct: 57 LAKNELSAAQKREQTPFDPSIEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVD 116
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ DLA W+ L E+ I L FFA+S+ +V N+V + + E R + Q
Sbjct: 117 LSKDLADWE---KLKSGEKHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQ 173
Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
E VHS + +I + D E LFN +P + KA+WAL + +
Sbjct: 174 IAMENVHSEMYSLLIDTYIRDSKEREYLFNAIDNLPCVKKKADWALNWISS--------- 224
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
+ + V + EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 225 ----KKANFGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 280
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ + K Q++ ++ EA L+E + + +P +G+N QY++
Sbjct: 281 ACLMFKYLVQ-------KPSQERVIEIIREAVLIEQEFLTKALPVDLLGMNCDLMSQYIE 333
Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
F+A+R ++G++ ++ T+NPF +M E I L+ + NFFE +V EYQ+ +
Sbjct: 334 FVADRLLLELGIDKIYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 383
>gi|4894211|gb|AAD32302.1| ribonucleotide reductase small subunit [Glycine max]
Length = 339
Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats.
Identities = 89/342 (26%), Positives = 155/342 (45%), Gaps = 29/342 (8%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
G + + + +L +S + P++Y WE Y A + W EV + D+ W++
Sbjct: 7 NGVDKARDEQEPILMEQSQRFCMFPIRYKQIWEMYKKAEASFWTAEEVDLSYDVQHWET- 65
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L+ E+ I L FFA+S+ +V N+ + PE R + Q E +HS +
Sbjct: 66 --LSVSEKHFITHVLAFFAASDGIVLENLAARFLSDVQIPEARAFYGFQIAMENIHSEMY 123
Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ + D E LFN +P + KA WAL + + +S +
Sbjct: 124 SLLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWIHSSTS--------------FAE 169
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
V + EG++F F I L + M G+ + I RDE LH +F + + ++
Sbjct: 170 RLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRK- 228
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ ++HEA +E + + +P +G+N+ QY++F+A+R +G
Sbjct: 229 ------PLISDQVHKLVHEAVEIETEFVCDALPCALIGMNSVLMSQYIKFVADRLLVALG 282
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ + ENPF WM E I L+ + NFFE RV +YQ+ + +
Sbjct: 283 YQRKYNV-ENPFDWM-EFISLQGKANFFERRVGDYQKASVMS 322
>gi|110636874|ref|YP_677081.1| ribonucleoside-diphosphate reductase 1 subunit beta [Cytophaga
hutchinsonii ATCC 33406]
gi|110279555|gb|ABG57741.1| ribonucleoside-diphosphate reductase 1, beta subunit [Cytophaga
hutchinsonii ATCC 33406]
Length = 324
Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats.
Identities = 90/332 (27%), Positives = 153/332 (46%), Gaps = 29/332 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L + L P+K+ W Y + W E+ + DL W L D ER
Sbjct: 5 EEPLLKENKNRFVLFPIKHDDIWAMYKQEEASFWTAEEIDLSQDLIDW---ANLNDGERH 61
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + + PE + + Q E +HS T+ +I +
Sbjct: 62 FISHVLAFFAASDGIVNENLAVNFLEKVQIPEAKCFYGFQIMMENIHSETYSLLIDTYIK 121
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LFN VP + KA+WAL++ S + + + E
Sbjct: 122 DPKEKDRLFNAIDTVPCVKKKADWALRFIDNGS---------------FIENIIAFAAVE 166
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F + L + M G++ + I RDE LH +F + + K
Sbjct: 167 GIFFSGSFCSVFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYTKYIN------NKLP 220
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
++ ++ EA +E + +++P +G+NA +QY++F+A+R +G+ F T
Sbjct: 221 AERVIQIILEAVEIEKEFVTDSLPVDLIGMNARLMQQYIEFVADRLLVALGVPKQFNAT- 279
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E+I L+ + NFFE RV+EYQ+ +
Sbjct: 280 NPFDFM-EMISLQGKTNFFEKRVSEYQKSGVM 310
>gi|55742360|ref|NP_001007164.1| ribonucleoside-diphosphate reductase subunit M2 B [Danio rerio]
gi|29561808|emb|CAD87804.1| novel protein similar to vertebrate ribonucleotide reductase M2 B
(TP53 inducible) (RRM2B) [Danio rerio]
Length = 349
Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats.
Identities = 105/352 (29%), Positives = 167/352 (47%), Gaps = 31/352 (8%)
Query: 5 TGLSPIQAGEKRVN---VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
T ++ Q G K V+ V+D+ +L + P++Y W+ Y A + W EV +
Sbjct: 10 TVITGYQNGHKDVDPNSVEDEPLLRENPKRFVIFPIQYPDIWKMYKQAQASFWTVEEVDL 69
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DL W +GL +E+ I L FFA+S+ +V N+V + + PE R + Q
Sbjct: 70 SKDLTHW---DGLKSEEKHFISHVLAFFAASDGIVNENLVQRFSQEVQLPEARSFYGFQI 126
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E VHS + +I + D E LFN + +P + KA+WALQ+
Sbjct: 127 LIENVHSEMYSMLINTYIRDLKERDYLFNAVQTMPCVRRKADWALQWI------------ 174
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D + F + L F V EG++F FA I L + M G+ + I RDE LH NF
Sbjct: 175 SDTNSTFGERLVAFAAV-EGIFFSGSFAAIYWLKKRGLMPGLTYSNELISRDEGLHCNFA 233
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + + K + ++ +A +E + E +P +G+N +QY++F
Sbjct: 234 CLIYSYLVK-------KPSVDRVNDIIAKAVSIEQEFLTEALPVNLIGMNCSLMKQYIEF 286
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+A+R +GL + +ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 287 VADRLLTDLGLPKAY-CSENPFDFM-ESISLEGKTNFFEKRVAEYQRLGVMS 336
>gi|281200507|gb|EFA74725.1| ribonucleotide reductase small subunit [Polysphondylium pallidum
PN500]
Length = 335
Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats.
Identities = 92/331 (27%), Positives = 160/331 (48%), Gaps = 28/331 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D L P+KY W+ Y A + W E+ + D+ W+ N L D+ER
Sbjct: 6 EEPILKENKDRFVLFPIKYADIWQMYKKAEASFWTAEEIDLAGDIGDWE--NKLNDNERH 63
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I +
Sbjct: 64 FITNVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIK 123
Query: 141 D---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D + +F+ +P++ KA+WAL++ + F + L F V E
Sbjct: 124 DSETKRNIFHAIDTIPAVKKKADWALRWI-------------SNSKSFAERLVAFAAV-E 169
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + +++ + +
Sbjct: 170 GIFFSGSFCSIFWLKKRGLMHGLTFSNELISRDEGLHCDFACLLYQKLQNKLDNNT---- 225
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
T++ +A E + E++P +G+N+ S QY++F A+R +G + ++ +
Sbjct: 226 ---IETIIRDAVACEKEFITESLPVDLIGMNSRSMSQYIEFCADRLLLSLGYKKIYN-SS 281
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
NPF WM E+I L+++ NFFE +V+EYQ+
Sbjct: 282 NPFDWM-EMISLQRKTNFFEGKVSEYQKSGV 311
>gi|194883840|ref|XP_001976005.1| GG22616 [Drosophila erecta]
gi|190659192|gb|EDV56405.1| GG22616 [Drosophila erecta]
Length = 393
Score = 263 bits (671), Expect = 3e-68, Method: Composition-based stats.
Identities = 87/342 (25%), Positives = 154/342 (45%), Gaps = 28/342 (8%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++ + + +L + P++Y W+ Y A + W EV + DL W
Sbjct: 62 MERSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
L DDER I L FFA+S+ +V N+V + + E R + Q E VHS
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 178
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
+ +I + D + LFN +P++ KA+WAL + +
Sbjct: 179 MYSVLIDTYIRDPNQREYLFNAIETMPAVKRKADWALSWISS-------------KSANF 225
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLV 285
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ ++ ++ +A +E + + +P +G+N QY++F+A+R +
Sbjct: 286 Q-------RPKHERIIEIIRDAVAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+G+ ++ T+NPF +M E+I L + NFFE +V EYQ+
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVAEYQRMGV 378
>gi|94986920|ref|YP_594853.1| ribonucleotide reductase, beta subunit [Lawsonia intracellularis
PHE/MN1-00]
gi|94731169|emb|CAJ54531.1| Ribonucleotide reductase, beta subunit [Lawsonia intracellularis
PHE/MN1-00]
Length = 333
Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats.
Identities = 139/337 (41%), Positives = 191/337 (56%), Gaps = 5/337 (1%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
VN DKR++N ++D+NQLLP +Y WAW+ +L A NHW P E+ M D+ + LT
Sbjct: 2 PVNASDKRIVNGKTDINQLLPFRYPWAWDFFLKANQNHWTPLEISMSQDVYDYNHT--LT 59
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+ER + L + +S+ L NI LA+ ++ PE + Y RQ +EEA+H+ T+Q+ I
Sbjct: 60 TNERHVFDNVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHCI 119
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
SLGL++ E++N YR VP I K + + + + KD EF+ F +
Sbjct: 120 ESLGLEQSEIYNRYRVVPEIYGKILLSNKRLEQVLRSDINLSDKDNLHEFIMSYIFFAAI 179
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
FEG WFY GF+ I SL R M G AEQ+QYI+RDE LH FGI VI + E
Sbjct: 180 FEGCWFYNGFSPIFSLQRRGLMKGTAEQFQYILRDEVLHCTFGITVIKGLIEEENITLDP 239
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
R + E EIAYA+ + + +G NA +FIANRR Q+G++ F
Sbjct: 240 T---AVRQLWDEVEAAEIAYANYILHEPIIGYNADLHIGQFRFIANRRSRQLGMKEPFPG 296
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+N PW+ E +L+KEKNFFETRVTEYQ G LKWD
Sbjct: 297 AKNVLPWLDEQSNLRKEKNFFETRVTEYQTGGGLKWD 333
>gi|167519412|ref|XP_001744046.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778008|gb|EDQ91624.1| predicted protein [Monosiga brevicollis MX1]
Length = 329
Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats.
Identities = 94/339 (27%), Positives = 160/339 (47%), Gaps = 28/339 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ + +L A +LP+++ W+ Y A + W EV + DL W N L
Sbjct: 4 PEEIQAEPLLRANPRRFVILPIQHDAIWKMYKKAEASFWTVEEVDLGRDLVDW---NKLN 60
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
DE+ IK L FFA+S+ +V N+V + PE R + Q E +HS + +I
Sbjct: 61 KDEQFFIKHVLAFFAASDGIVNENLVERFMTEVQLPEARCFYGFQIAIENIHSEMYSRLI 120
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E LFN +P++ KA WA+++ D+ + V
Sbjct: 121 ETYVNDSAEKDSLFNAIETLPAVRRKAEWAMRWI-------------SHDKASFGERVVA 167
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++F FA I L + M G+ + I RDE LH +F + + +K
Sbjct: 168 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFSMLKK----- 222
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+ +++ ++ +A +E + +P G +G+NA +QY++F+++R +G E +
Sbjct: 223 --RPSKERVTGIIMDAVEIEQDFLTNALPCGLLGMNATLMKQYIEFVSDRLLVALGCEKI 280
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
F +ENPF +M E I ++ + NFFE RV EYQ+ +
Sbjct: 281 FN-SENPFDFM-ESISIEGKTNFFEKRVGEYQKAGVMAD 317
>gi|322493026|emb|CBZ28311.1| ribonucleoside-diphosphate reductase small chain,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 388
Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats.
Identities = 92/352 (26%), Positives = 158/352 (44%), Gaps = 28/352 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A + P + N +++ + L P++Y W KY + W E+ +
Sbjct: 48 APGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 107
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
+D+ W L D ER IK L FFA S+ +V N+ + PE R + Q
Sbjct: 108 GNDMKDW---AALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQL 164
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS T+ ++ + D E L + + +P I KA WA+++ +
Sbjct: 165 MMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIGS---------- 214
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
F + L F V EG++F F + L + M G+ + I RDE LH +F
Sbjct: 215 ---SASFQERLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFA 270
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ N H+ K +++ ++ +A +E + + +P +G+NA QY++F
Sbjct: 271 CLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEF 324
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+A+R +G E + T+ PF +M E+I L+ + NFFE +V EYQ+ +
Sbjct: 325 VADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 374
>gi|149279601|ref|ZP_01885730.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter
sp. BAL39]
gi|149229637|gb|EDM35027.1| ribonucleoside-diphosphate reductase 1, beta subunit [Pedobacter
sp. BAL39]
Length = 324
Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats.
Identities = 90/334 (26%), Positives = 153/334 (45%), Gaps = 30/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+++ +L D LLP+KY WE Y + + W E+ + DD W + L D ER
Sbjct: 3 EEEVLLKENKDRFVLLPIKYPEIWEMYKKSEASFWTAEEIDLSDDQKHW---DNLNDGER 59
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I L FF++S+ +V N+ + + PE R + Q E +HS T+ +I +
Sbjct: 60 HFISHILAFFSASDGIVNENLAVNFMSEVQLPEARCFYGFQIMMENIHSETYALLIDTYI 119
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LF+ VP + KA WAL++ + V +
Sbjct: 120 KDPEEKDRLFHAIETVPCVKKKAEWALRWIDN---------------GNFAERLVAFAAV 164
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F F I L + M G+ + I RDE H F + + +K +
Sbjct: 165 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGSHCEFACLLYSMLKNKLS------ 218
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ ++ +A +E + + +P +G+NA QY++F+A+R ++G ++ +
Sbjct: 219 -EEHVHGIIRDAVEIEKEFVTDALPVALIGMNAKLMSQYIEFVADRWLQELGYTKIY-HA 276
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M E+I L+ + NFFE RV +YQ+ L
Sbjct: 277 TNPFDFM-EMISLQGKTNFFEKRVGDYQKSGVLT 309
>gi|90660281|gb|ABD97395.1| ribonucleotide reductase small subunit [Cowpox virus]
Length = 333
Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats.
Identities = 89/337 (26%), Positives = 152/337 (45%), Gaps = 29/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
VN+ + +L + + P++Y W Y A + W EV + D+ W N LT
Sbjct: 11 VNLVMEPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
DE+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I
Sbjct: 68 DEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLID 127
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LFN +P + KA+WA ++ D + + +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAF 173
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 174 TAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL------- 226
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
++ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++
Sbjct: 227 HPPSEETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIY 286
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
T NPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 287 NVT-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321
>gi|195027582|ref|XP_001986661.1| GH20400 [Drosophila grimshawi]
gi|193902661|gb|EDW01528.1| GH20400 [Drosophila grimshawi]
Length = 393
Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats.
Identities = 88/352 (25%), Positives = 159/352 (45%), Gaps = 31/352 (8%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A T + + A + + +L + P++Y W+ Y A + W EV +
Sbjct: 57 AKGTIMEKVAAP---FDPSIEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDL 113
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
D+ W LTD+ER I L FFA+S+ +V N+V + + E R + Q
Sbjct: 114 SKDMTDW---VRLTDNERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQI 170
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E VHS + +I + D + LFN +P++ KA+WAL + +
Sbjct: 171 AMENVHSEMYSVLIDTYIRDPHQRDYLFNAIETMPAVKRKADWALSWISS---------- 220
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
+ + + EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 221 ---KAANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 277
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + + + +++ ++ +A +E + + +P +G+N +Y++F
Sbjct: 278 VMMFQHLVQ-------RPSRERIIEIVSDAVTIEQEFLTDALPVNLIGMNCALMSEYIEF 330
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+A+R ++G+ ++ T+NPF +M E+I L + NFFE +V EYQ+
Sbjct: 331 VADRLLVELGVGKIYN-TKNPFTFM-EMISLDGKTNFFEKKVGEYQRMGVTS 380
>gi|145580571|pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit R2
Length = 332
Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats.
Identities = 93/335 (27%), Positives = 156/335 (46%), Gaps = 28/335 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L +E
Sbjct: 10 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 66
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 67 RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 126
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D E LFN +P + KA+WAL++ + + V +
Sbjct: 127 IKDPKEREFLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVAFAA 173
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + M G+ + I RDE LH +F + + K
Sbjct: 174 VEGIFFSGSFASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HK 226
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+++ R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+
Sbjct: 227 PSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV 286
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 287 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 319
>gi|300709535|ref|YP_003735349.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus
jeotgali B3]
gi|299123218|gb|ADJ13557.1| ribonucleotide-diphosphate reductase subunit beta [Halalkalicoccus
jeotgali B3]
Length = 330
Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats.
Identities = 161/331 (48%), Positives = 229/331 (69%), Gaps = 4/331 (1%)
Query: 23 RMLN--ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++N + D N++LP+ Y WA E Y + N+W P EVPM DD+ W++ + L+ +ER
Sbjct: 2 PLINTESHHDPNKILPIDYDWAREYYKAGVANNWTPEEVPMADDVHQWEN-DELSSEERQ 60
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+++ NLGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y SLG
Sbjct: 61 LVEWNLGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGF 120
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
D L+ MY +P+I AK + + TQ + P F + + +EFL+DL FYV+ EG++
Sbjct: 121 DPEYLYGMYDRIPAIEAKDEFVVDLTQVIDDPDFEISSDEDVREFLRDLVGFYVIMEGIF 180
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY GFA +L L R KMVG+ EQ++YIMRDESLHLNFG+D+IN ++ EN +WT F+ +
Sbjct: 181 FYAGFAMMLGLKRQGKMVGVGEQFEYIMRDESLHLNFGVDLINTVREENSGIWTDVFEAE 240
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
+L EA LE YA E P+ +G+ +Y++++A+RR Q+G+EP++ T+NPF
Sbjct: 241 IEGLLREAVELERTYAREACPEEVLGMGPAQFAEYVEYVADRRLDQLGMEPVYD-TDNPF 299
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
PWM+E +DL KEKNFFET V EYQ G L+W
Sbjct: 300 PWMAEQVDLNKEKNFFETNVAEYQSGGSLEW 330
>gi|255079598|ref|XP_002503379.1| predicted protein [Micromonas sp. RCC299]
gi|226518645|gb|ACO64637.1| predicted protein [Micromonas sp. RCC299]
Length = 335
Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats.
Identities = 95/332 (28%), Positives = 156/332 (46%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ D + P+KYG WE Y A + W EV + DD+ W N L +DE+
Sbjct: 15 EPLLDPNDDRFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMVHW---NKLNNDEKHF 71
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + + PE R + Q E +HS + +I + D
Sbjct: 72 IKHILAFFAASDGIVLENLGVRFMGEVQFPEARAFYGFQIAIENIHSEMYSLLIDAYVKD 131
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LF + +P I KA+WA ++ ++ + + + + EG
Sbjct: 132 AQEKTYLFQAIQNIPCIAKKADWAFKWIESSAD--------------FAERLIAFACIEG 177
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE LH +F + + I K +
Sbjct: 178 IFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLYSYINK-------KPNE 230
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
R ++ EA +E + + +P VG+NA +Y++F+A+ Q+G+ + N
Sbjct: 231 SVVRQIVKEAVEIEKEFVCDALPCALVGMNADLMSEYIEFVADHLLGQLGMSKEYNAA-N 289
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 290 PFDWM-ELISLQGKTNFFEKRVGEYQKSGVMN 320
>gi|301117384|ref|XP_002906420.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
infestans T30-4]
gi|262107769|gb|EEY65821.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
infestans T30-4]
Length = 379
Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats.
Identities = 86/346 (24%), Positives = 160/346 (46%), Gaps = 28/346 (8%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+S + E + + L + L P++ W+ Y A + W E+ + DL
Sbjct: 45 MSEFKRKEMNGEIPIEPFLVENPNRFVLFPIQEHEVWQMYKKAEASFWTAEELDLVHDLK 104
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W + LTD+ER IK L FFA+S+ +V N+ + + PE R + Q E +
Sbjct: 105 DW---SKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQVPEARCFYGFQIAIENI 161
Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
HS + +I + D E L +P +T KA+WA+++ D
Sbjct: 162 HSEVYSLLIDTYIKDAIEKDHLLRAIETIPCVTKKAHWAIKW-------------CDPRV 208
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ + + EG++F F I L + M G++ + I RDE +H +F + +
Sbjct: 209 SSYPERLLAFAAVEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGMHTDFACLLYS 268
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
++ + P + + ++ +A +E + +++P +G+N+ QY++F+A+R
Sbjct: 269 KLVTKLP-------ESRVHEIVRDAVTIEHEFVRDSLPVELIGMNSGLMCQYIEFVADRL 321
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ +G+ ++ + +NPF WM +I L+ + NFFE RV EY +
Sbjct: 322 LYSLGVSKIY-HAKNPFDWMD-MISLQGKTNFFEKRVGEYSKAGVG 365
>gi|73544537|ref|XP_848163.1| ribonucleoside-diphosphate reductase small chain [Leishmania major
strain Friedlin]
gi|321438516|emb|CBZ12275.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania major strain Friedlin]
Length = 388
Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats.
Identities = 93/352 (26%), Positives = 160/352 (45%), Gaps = 28/352 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A + P + N +++ + L P++Y W KY + W E+ +
Sbjct: 48 AAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 107
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
+D+ W + L D ER IK L FFA S+ +V N+ + PE R + Q
Sbjct: 108 GNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQL 164
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS T+ ++ + D E L + + +P I KA WA+++ +
Sbjct: 165 MMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGS---------- 214
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
F + L F V EG++F F + L + M G+ + I RDE LH +F
Sbjct: 215 ---SASFQERLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFA 270
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ N H+ K +++ ++ +A +E + + +P +G+NA QY++F
Sbjct: 271 CLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEF 324
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+A+R +G E ++ T+ PF +M E+I L+ + NFFE RV EYQ+ +
Sbjct: 325 VADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMS 374
>gi|226528734|ref|NP_001150842.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
gi|195642302|gb|ACG40619.1| ribonucleoside-diphosphate reductase small chain [Zea mays]
Length = 339
Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats.
Identities = 87/333 (26%), Positives = 150/333 (45%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L SD + P+++ WE Y A + W EV + D W L+ DER
Sbjct: 14 EEPLLAESSDRFSMFPIRFPQIWEFYKKAVASFWTAEEVGLSADARHWDE--ALSPDERH 71
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + E R + Q E +HS + ++ +
Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMTDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF VP++ KA+WA+++ + V + E
Sbjct: 132 DHVEKDRLFRAIDTVPAVRRKADWAMRWIDGGER--------------FAERIVAFACVE 177
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + ++ +
Sbjct: 178 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYELLRNKLD------- 230
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + R ++ +A +E + + +P VG+N QY++F+A+R +G + ++ T
Sbjct: 231 EARVREIVADAVDIEREFVCDALPVALVGMNGDLMSQYIEFVADRLLMALGCKKMYNVT- 289
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM E+I L + NFFE RV +YQ+ + +
Sbjct: 290 NPFDWM-ELISLMGKTNFFEKRVGDYQKASVMN 321
>gi|311748425|ref|ZP_07722210.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus
sp. PR1]
gi|126576938|gb|EAZ81186.1| ribonucleoside-diphosphate reductase, beta subunit [Algoriphagus
sp. PR1]
Length = 326
Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats.
Identities = 88/335 (26%), Positives = 153/335 (45%), Gaps = 29/335 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
+ + +L+ + L P+++ WE Y A + W E+ + D+ WKS L D E
Sbjct: 1 MQQEPILSENKNRFVLFPIQHADIWEYYKKAEASFWTAEEIDLGQDMVDWKS---LNDGE 57
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N+ + E + + Q E +HS T+ +I +
Sbjct: 58 RHFISHVLAFFAASDGIVNENLAEHFVAEVQYTEAKFFYGFQIAMENIHSETYSLLIDTY 117
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D E LFN + + KA+WAL++ F + L F V
Sbjct: 118 IKDPSERDKLFNAIEHIDCVKKKADWALRWIDN--------------GNFQERLIAFAAV 163
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F F I L + M G+ + I RDE LH +F + +
Sbjct: 164 -EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACHLYTKHV------VNP 216
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
++ R ++ +A +E + + +P +G+N+ QY++F+A+R ++ E ++
Sbjct: 217 LPKETVREIIIDAVKIEKEFVTDALPVRLIGMNSDLMCQYIEFVADRLLLELDCEKVWN- 275
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ NPF +M +I L+ + NFFE RV +YQ+ +K
Sbjct: 276 STNPFDFMD-MISLQGKTNFFEKRVGDYQKAGVMK 309
>gi|56713400|gb|AAW23440.1| ribonucleoside-diphosphate reductase [Vaccinia virus]
gi|56713684|gb|AAW23722.1| ribonucleoside-diphosphate reductase [Vaccinia virus]
gi|88854075|gb|ABD52493.1| ribonucleoside-diphosphate reductase subunit [Vaccinia virus]
gi|167412519|gb|ABZ79953.1| ribonucleotide reductase small subunit [Vaccinia virus GLV-1h68]
Length = 319
Score = 262 bits (668), Expect = 7e-68, Method: Composition-based stats.
Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|154340038|ref|XP_001565976.1| ribonucleoside-diphosphate reductase small chain [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134063294|emb|CAM45500.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 388
Score = 262 bits (668), Expect = 7e-68, Method: Composition-based stats.
Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 28/340 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+ N +++ + L P++Y W KY + W E+ + +D+ W
Sbjct: 60 AEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDW---VA 116
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L D ER IK L FFA S+ +V N+ + PE R + Q E +HS T+
Sbjct: 117 LNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSV 176
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
++ + D E L + + +P I KA WA+++ + F + L
Sbjct: 177 LLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGS-------------SASFQERLI 223
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
F V EG++F F + L + M G+ + I RDE LH +F + N
Sbjct: 224 GFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------NS 276
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
H+ K +++ ++ +A +E + + +P +G+NA QY++F+A+R +G E
Sbjct: 277 HIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEE 336
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ T+ PF +M E+I L+ + NFFE +V EYQ+ +
Sbjct: 337 KHYNATQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 374
>gi|3914640|sp|O15910|RIR2_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase R2 subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|2411479|gb|AAB70705.1| ribonucleotide reductase small subunit [Trypanosoma brucei]
gi|261335314|emb|CBH18308.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 262 bits (668), Expect = 9e-68, Method: Composition-based stats.
Identities = 91/333 (27%), Positives = 158/333 (47%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER
Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + +
Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E L + R +P I KA WA+++ + +S F L F V E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAAV-E 178
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + + K
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY------IVNKLP 232
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M +I L+ + NFFE +V EYQ+ +
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323
>gi|56404698|sp|O57175|RIR2_VACCA RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|2772676|gb|AAB96415.1| ribonucleotide reductase, small subunit [Vaccinia virus]
gi|47088360|gb|AAT10430.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|160857924|emb|CAM58212.1| ribonucleotide reductase small subunit [Vaccinia virus Ankara]
Length = 319
Score = 262 bits (668), Expect = 9e-68, Method: Composition-based stats.
Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|255551489|ref|XP_002516790.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
communis]
gi|223543878|gb|EEF45404.1| ribonucleoside-diphosphate reductase small chain, putative [Ricinus
communis]
Length = 342
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 88/331 (26%), Positives = 152/331 (45%), Gaps = 29/331 (8%)
Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
+L ++ + P++Y WE Y A + W EV + D+ W++ L+ E+ I
Sbjct: 21 PILKEQNQRFCMFPIRYKSLWEMYKKAEASFWTAEEVDLSQDVQQWET---LSVSEKHFI 77
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
L FFA+S+ +V N+ + PE R + Q E +HS + ++ + D
Sbjct: 78 SHVLAFFAASDGIVLENLAARFLNDIQVPEARAFYGFQIAMENIHSEMYSLLLETYIKDS 137
Query: 143 GE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
E LFN +P + KA WAL + + + V + EG+
Sbjct: 138 REKNRLFNAIETIPCVARKAKWALDWIHS--------------SSLYAERLVAFACVEGI 183
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
+F F I L + M G+ + I RDE LH +F + + ++ + Q
Sbjct: 184 FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLQW-------Q 236
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
K + ++HEA +E + + +P +G+N+ QY++F+A+R +G + + ENP
Sbjct: 237 KVQQIVHEAVEIETEFVCDALPCALIGMNSTLMSQYIKFVADRLLVALGYQRKYNV-ENP 295
Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
F WM E I L+ + NFFE RV +YQ+ + +
Sbjct: 296 FDWM-EFISLQGKANFFERRVGDYQKASVMS 325
>gi|213511642|ref|NP_001133495.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar]
gi|209154228|gb|ACI33346.1| Ribonucleoside-diphosphate reductase subunit M2 [Salmo salar]
Length = 387
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 91/333 (27%), Positives = 153/333 (45%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L + P+KY W+ Y A + W EV + D W + L D+ER
Sbjct: 67 EEPLLKENPRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDLSKDTQHW---DSLKDEERY 123
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 124 FISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIK 183
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LFN +P + KA+WAL + + + F + + F V E
Sbjct: 184 DPKERDYLFNAIETLPCVKRKADWALNWI------------GNKNAGFGERVVAFAAV-E 230
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G+ + I RDE LH +F + + K
Sbjct: 231 GIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HKPS 283
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
++ ++ A +E + + +P +G+N QY++F+A+R ++G + +++ E
Sbjct: 284 KETVTKLIRNAVEIEQEFLTKALPVKLIGMNCDLMTQYIEFVADRLMLELGFDKIYRV-E 342
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 343 NPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 374
>gi|255037048|ref|YP_003087669.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM
18053]
gi|254949804|gb|ACT94504.1| Ribonucleoside-diphosphate reductase [Dyadobacter fermentans DSM
18053]
Length = 331
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 84/334 (25%), Positives = 148/334 (44%), Gaps = 29/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ +L L P+K+ WE Y + W E+ + D+ W+ L+D ER
Sbjct: 7 RQEPLLTEDPLRFVLFPIKHSDIWEMYKRHEASFWTAEEIDLSQDMKDWE---NLSDGER 63
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I L FFA+S+ +V N+ + + E + + Q E +HS T+ +I +
Sbjct: 64 HFISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFYGFQIAMENIHSETYSLLIDTYI 123
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E L +P + KA+WAL++ + + + +
Sbjct: 124 KDSAEKDRLLRAIETIPCVQKKADWALKWIDS---------------PVFAERIIAFAAV 168
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F F I L + M G++ + I RDE LH F + + + +
Sbjct: 169 EGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCEFACLLYTKHIL------NQL 222
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
Q++ ++ +A +E + E +P +G+NA +QY+++IA+ ++G F +
Sbjct: 223 PQERVIEIMLDAVEIEKEFVSEALPVSLIGMNADLMKQYIEYIADFWLERLGCPKQFG-S 281
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M E+I L + NFFE RV EYQ+ +
Sbjct: 282 ANPFDFM-ELISLPGKTNFFEKRVGEYQKAGVMS 314
>gi|74025550|ref|XP_829341.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei]
gi|70834727|gb|EAN80229.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei]
gi|261335315|emb|CBH18309.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 91/333 (27%), Positives = 158/333 (47%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER
Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + +
Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E L + R +P I KA WA+++ + +S F L F V E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAAV-E 178
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + + K
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY------IVNKLP 232
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M +I L+ + NFFE +V EYQ+ +
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323
>gi|327403795|ref|YP_004344633.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM
16823]
gi|327319303|gb|AEA43795.1| Ribonucleoside-diphosphate reductase [Fluviicola taffensis DSM
16823]
Length = 324
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 86/335 (25%), Positives = 157/335 (46%), Gaps = 28/335 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
+ + +L+ + L P+++ W Y A + W E+ + DL W++ L+DDE
Sbjct: 2 ANAEPILSENKNRFVLFPIQHEDIWSFYKKAEASFWTAEEIDLSPDLIDWET--KLSDDE 59
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R +K L FFA+S+ +V N+ + E + + Q E +HS T+ +I +
Sbjct: 60 RHFVKHVLAFFAASDGIVNENLAEHFLAEVQYTEAKFFYGFQVAMENIHSETYSLLIDTY 119
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D+ E LFN + + KA+WAL++ S + V +
Sbjct: 120 IKDQKEKNHLFNALDTIDCVRKKADWALRWIDNGS---------------FAERLVAFAA 164
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F F I L + M G++ + I RDE LH +F + + +
Sbjct: 165 VEGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLYTKHL------IHQ 218
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+++ + ++ +A +E + + +P +G+NA QY++F+A+R ++G +F
Sbjct: 219 LSKEQVQEIILDAVEIEKEFVTDALPVKLIGMNADLMAQYIEFVADRLLTELGNPKVFN- 277
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
T NPF +M +I ++ + NFFE RV EYQ+ +
Sbjct: 278 TTNPFDFMD-MISIQGKTNFFEKRVAEYQKSGVMS 311
>gi|325119319|emb|CBZ54873.1| hypothetical protein NCLIV_052980 [Neospora caninum Liverpool]
Length = 392
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 96/339 (28%), Positives = 156/339 (46%), Gaps = 29/339 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ ++ +L A +LP+++ WE Y + W E+ + D+ W+S L
Sbjct: 68 KEKESEEPLLIANPRRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWES---LN 124
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+E+ IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I
Sbjct: 125 SNEKHFIKYVLAFFAASDGIVLENLAEKFLSEIQIPEARAFYGFQIAMENIHSETYSLLI 184
Query: 136 TSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
DE ELF+ V ++ KA WA + F + L
Sbjct: 185 DQYIRDEKEKMELFDAVHNVKAVAVKAAWAAMWIN-------------NRNCFAERLVG- 230
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG+ F F I L + M G+ + I RDE LH +F + +Q+K + P
Sbjct: 231 FACVEGILFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHADFACLLYSQLKNKLPD- 289
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+ + M+ EA +E A+ E +P +G+N S QY++F+A+R +G+ +
Sbjct: 290 ------KVVQDMVREAVTVERAFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKI 343
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
F + NPF WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 344 F-FATNPFDWM-ELISLQGKTNFFEKRVGEYQKAGVMAD 380
>gi|157869457|ref|XP_001683280.1| ribonucleoside-diphosphate reductase small chain [Leishmania major
strain Friedlin]
gi|68224164|emb|CAJ04657.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania major strain Friedlin]
Length = 392
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 92/352 (26%), Positives = 159/352 (45%), Gaps = 28/352 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A + P + N +++ + L P++Y W KY + W E+ +
Sbjct: 52 AAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 111
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
+D+ W + L D ER IK L FFA S+ +V N+ + PE R + Q
Sbjct: 112 GNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQL 168
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS T+ ++ + D E L + + +P I KA WA+++ +
Sbjct: 169 MMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGS---------- 218
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
F + L F V EG++F F + L + M G+ + I RDE LH +F
Sbjct: 219 ---SASFQERLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFA 274
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ N H+ K +++ ++ +A +E + + +P +G+NA QY++F
Sbjct: 275 CLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEF 328
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+A+R +G E + T+ PF +M E+I L+ + NFFE +V EYQ+ +
Sbjct: 329 VADRLLVSLGEEKHYHSTQ-PFEFM-EMISLQGKTNFFERKVGEYQKAGVMS 378
>gi|118383611|ref|XP_001024960.1| ribonucleoside-diphosphate reductase, beta subunit family protein
[Tetrahymena thermophila]
gi|89306727|gb|EAS04715.1| ribonucleoside-diphosphate reductase, beta subunit family protein
[Tetrahymena thermophila SB210]
Length = 376
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 96/358 (26%), Positives = 165/358 (46%), Gaps = 37/358 (10%)
Query: 4 NTGLSPI--------QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55
TG++P+ + + +D+ +L + L P+KY WE Y + W
Sbjct: 32 ATGMNPLPLLKSKNDEGKAPKEGYEDEPLLKDNPNRFVLFPIKYNKVWEMYKKELASFWT 91
Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
E+ + DL W+ LTD+ER IK L FFA+S+ +V N+ + PE R
Sbjct: 92 ADEIDLYQDLKDWE---RLTDNERHFIKYVLAFFAASDGIVLENLAEQFMCEVQIPEARA 148
Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSP 172
+ Q E +HS T+ +I + DE E LF + VP I KA WAL++ +
Sbjct: 149 FYGFQIAMENIHSETYSLLIDTYIKDEVEKDYLFKASQNVPVIHKKAQWALKWINNNDN- 207
Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
+ + EG++F F I L + + M G+ + I RDE
Sbjct: 208 -------------FASRLIAFAAIEGIFFSGSFCAIFWLKKRSLMPGLTFSNELISRDEG 254
Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
LH +F + + + + +++ ++ EA +E + E +P +G+N+
Sbjct: 255 LHTDFACLLYSMLNKKL-------TKEEIYEIITEAVEIEKEFISEALPVELIGMNSNMM 307
Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+QY++F+A+R +G+ + ++NPF WM +I ++ + NFFE RV EYQ+ +
Sbjct: 308 KQYLEFVADRLLFALGVPKFYN-SKNPFEWMD-MISIQGKTNFFEKRVGEYQKANVMS 363
>gi|74025552|ref|XP_829342.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei]
gi|70834728|gb|EAN80230.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei]
Length = 337
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 92/333 (27%), Positives = 159/333 (47%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER
Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + +
Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E L + R +P I KA WA+++ + +S F L F V E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAAV-E 178
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + + K
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY------IVNKLP 232
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + ++ A L+E + + +P +G+N+ QY++F+A+R +G + + ++
Sbjct: 233 RDRVLEIICNAVLIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M +I L+ + NFFE +V EYQ+ +
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323
>gi|195172750|ref|XP_002027159.1| GL20023 [Drosophila persimilis]
gi|198459455|ref|XP_001361381.2| GA21447 [Drosophila pseudoobscura pseudoobscura]
gi|194112972|gb|EDW35015.1| GL20023 [Drosophila persimilis]
gi|198136695|gb|EAL25959.2| GA21447 [Drosophila pseudoobscura pseudoobscura]
Length = 391
Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats.
Identities = 86/344 (25%), Positives = 157/344 (45%), Gaps = 28/344 (8%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++ + + +L + P++Y W+ Y A + W EV + D W
Sbjct: 60 MEKTGSPFDPSIEPLLRENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDATDW- 118
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
LTD+ER I L FFA+S+ +V N+V + + E R + Q E VHS
Sbjct: 119 --ARLTDNERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENVHSE 176
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
+ +I + + E LFN +P++ KA+WA+ + +
Sbjct: 177 MYSVLIDTYIREPQERDYLFNAIETMPAVKRKADWAMSWISS-------------KSANF 223
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++F FA I L + M G+ + I RDE LH +F + + + +
Sbjct: 224 AERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMYHHLV 283
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ +++ ++ +A +E + E +P +G+N QY++F+A+R +
Sbjct: 284 Q-------RPKRERIIEIIRDAVEIEQEFLTEALPVNLIGMNCVLMSQYIEFVADRLLGE 336
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+G+ ++ T+NPF +M E+I L + NFFE +V EYQ+ +
Sbjct: 337 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVAEYQRMGVVT 378
>gi|262263187|dbj|BAI48096.1| ribonucleotide reductase M2 [Sus scrofa]
Length = 355
Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats.
Identities = 90/329 (27%), Positives = 153/329 (46%), Gaps = 28/329 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L
Sbjct: 48 PSVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWET---LKP 104
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I
Sbjct: 105 EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLID 164
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LFN +P + KA+WAL++ + + V +
Sbjct: 165 TYIKDSKEREFLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVAF 211
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 212 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL------- 264
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
K +Q+ + ++ A +E + E +P +G+N +QY++F+A+R ++G +F
Sbjct: 265 HKPSEQRVKEIIVNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFGKVF 324
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTE 342
+ ENPF +M E I L+ + NFFE RV E
Sbjct: 325 RV-ENPFDFM-ENISLEGKTNFFEKRVGE 351
>gi|44971395|gb|AAS49745.1| RPXV032 [Rabbitpox virus]
Length = 319
Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats.
Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|41054952|ref|NP_955770.1| ribonucleoside-diphosphate reductase subunit M2 B [Mus musculus]
gi|81885688|sp|Q6PEE3|RIR2B_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B;
AltName: Full=TP53-inducible ribonucleotide reductase M2
B; AltName: Full=p53-inducible ribonucleotide reductase
small subunit 2-like protein; Short=p53R2
gi|34786000|gb|AAH58103.1| Ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus]
gi|74218244|dbj|BAE23760.1| unnamed protein product [Mus musculus]
Length = 351
Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats.
Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 28/342 (8%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
+ E V +++ +L S + P++Y W Y A + W EV + DL W
Sbjct: 21 ETEENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQAQASFWTAEEVDLSKDLPHW-- 78
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
N L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS
Sbjct: 79 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I + D + LFN +P + KA+WAL++ +
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA-------------DRKSTFG 184
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+ V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN 244
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
K + + R ++ +A +E + E +P G +G+N +QY++F+A+R ++
Sbjct: 245 -------KPSEDRVREIIADAVQIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLGEL 297
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
G +F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 298 GFSKIF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337
>gi|22164633|ref|NP_671546.1| EVM028 [Ectromelia virus]
gi|22123774|gb|AAM92332.1|AF523264_28 EVM028 [Ectromelia virus]
Length = 319
Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats.
Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQVTEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R+++ +A +E + +P +G+N + Y++FIA+R ++G + ++ T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFIADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|438946|gb|AAA60776.1| homolog of vaccinia virus CDS F4L (ribonucleotide reductase, small
chain); putative [Variola major virus]
gi|94484491|gb|ABF23604.1| ribonucleotide reductase small subunit [Variola virus]
gi|94484688|gb|ABF23800.1| ribonucleotide reductase small subunit [Variola virus]
gi|94484886|gb|ABF23997.1| ribonucleotide reductase small subunit [Variola virus]
gi|109724274|gb|ABG43399.1| ribonucleotide reductase small subunit [Variola virus]
Length = 333
Score = 261 bits (666), Expect = 2e-67, Method: Composition-based stats.
Identities = 89/337 (26%), Positives = 153/337 (45%), Gaps = 29/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
VN+ + +L + + P++Y W Y A + W EV + D+ W N LT
Sbjct: 11 VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
DE+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I
Sbjct: 68 DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LFN +P + KA+WA ++ +S + + +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSASYG--------------ERLIAF 173
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL------- 226
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
++ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++
Sbjct: 227 YPPSEETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIKFVADRLISELGFKKIY 286
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
T NPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 287 NVT-NPFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321
>gi|111184227|gb|ABH08147.1| HSPV044 [Horsepox virus]
Length = 319
Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats.
Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|194474072|ref|NP_001124015.1| ribonucleoside-diphosphate reductase subunit M2 B [Rattus
norvegicus]
gi|149066498|gb|EDM16371.1| ribonucleotide reductase M2 B (TP53 inducible) (predicted) [Rattus
norvegicus]
Length = 351
Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats.
Identities = 96/342 (28%), Positives = 161/342 (47%), Gaps = 28/342 (8%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
+ E V +++ +L S + P++Y W+ Y A + W EV + DL W
Sbjct: 21 ETKENEVRSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW-- 78
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
N L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS
Sbjct: 79 -NKLKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEM 137
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I + D + LFN +P + KA+WAL++ +
Sbjct: 138 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA-------------DRKSTFG 184
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+ V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 185 ERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN 244
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
K +++ ++ +A +E + E +P G +G+N +QY++F+A+R ++
Sbjct: 245 -------KPSEERVMEIIVDAVKIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLGEL 297
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
G +F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 298 GFSKIF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337
>gi|90023100|ref|YP_528927.1| amino acid adenylation [Saccharophagus degradans 2-40]
gi|89952700|gb|ABD82715.1| Class Ia ribonucleoside-diphosphate reductase beta subunit
[Saccharophagus degradans 2-40]
Length = 368
Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats.
Identities = 139/348 (39%), Positives = 196/348 (56%), Gaps = 6/348 (1%)
Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
G + + V DKR++N +D+NQL P KY WAW+ +++A NHW P ++ M D
Sbjct: 27 AGQAATPNAQAPVCASDKRVINGHTDINQLAPFKYPWAWDFFINANKNHWTPLDINMSQD 86
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ +K LT+ ER M + L + +S+ L NI LA+ ++ PE + Y RQ +EE
Sbjct: 87 VYDYKH--NLTEAERHMYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEE 144
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+H+ T+Q+ I +LGLD+GE++N YR VP I AK A + +++ D
Sbjct: 145 ALHTWTYQHCIETLGLDQGEIYNRYRVVPEINAKIQMANRRLESILRSDIDLTDPDQLNN 204
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
F+ F VFEG WFY GF+ I +L R M G AEQ QYIMRDE++H FGI ++Q
Sbjct: 205 FILAYIFFAAVFEGCWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDETMHCAFGIQTVSQ 264
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
I IEN T +TM EA E YA + + +G +A + +FIANRR
Sbjct: 265 IIIEN---CTNIDVDAIKTMWEEADEAEANYARYILREPILGYSANDHIEQFRFIANRRA 321
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
Q+GLE F + PW+ E +++KEKNFFETRV EYQ L+WD
Sbjct: 322 RQLGLEEPFPQAKCALPWLDEQANIRKEKNFFETRVIEYQ-AGGLEWD 368
>gi|42544136|ref|NP_056528.2| ribonucleoside-diphosphate reductase subunit M2 B isoform 1 [Homo
sapiens]
gi|114621161|ref|XP_001153916.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 2 [Pan troglodytes]
gi|74727333|sp|Q7LG56|RIR2B_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B;
AltName: Full=TP53-inducible ribonucleotide reductase M2
B; AltName: Full=p53-inducible ribonucleotide reductase
small subunit 2-like protein; Short=p53R2
gi|261278726|pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2
gi|261278727|pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2
gi|7229086|dbj|BAA92434.1| ribonucleotide reductase [Homo sapiens]
gi|7229115|dbj|BAA92493.1| ribonucleotide reductase [Homo sapiens]
gi|45259569|dbj|BAD12267.1| p53-inducible ribonucleotide reductase small subunit 2 [Homo
sapiens]
gi|52545612|emb|CAB70703.2| hypothetical protein [Homo sapiens]
gi|63055293|gb|AAY29059.1| ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
gi|80473666|gb|AAI08262.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
gi|109659128|gb|AAI17497.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
gi|119612247|gb|EAW91841.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_b [Homo
sapiens]
gi|120660296|gb|AAI30629.1| Ribonucleotide reductase M2 B (TP53 inducible) [Homo sapiens]
gi|190689549|gb|ACE86549.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic
construct]
gi|190690911|gb|ACE87230.1| ribonucleotide reductase M2 B (TP53 inducible) protein [synthetic
construct]
gi|261859014|dbj|BAI46029.1| ribonucleotide reductase M2 B [synthetic construct]
gi|313882916|gb|ADR82944.1| ribonucleotide reductase M2 B (TP53 inducible) [synthetic
construct]
Length = 351
Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats.
Identities = 98/350 (28%), Positives = 163/350 (46%), Gaps = 28/350 (8%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
+ S E + +++ +L S + P++Y W+ Y A + W EV +
Sbjct: 13 DQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Q
Sbjct: 73 KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 129
Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
E VHS + +I + D + LFN +P + KA+WAL++
Sbjct: 130 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------------ 177
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ + V + EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 178 -DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 236
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+ + K +++ R ++ +A +E + E +P G +G+N +QY++F+
Sbjct: 237 LMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFV 289
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
A+R ++G +F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 290 ADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337
>gi|324519017|gb|ADY47264.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum]
Length = 376
Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats.
Identities = 100/354 (28%), Positives = 164/354 (46%), Gaps = 28/354 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
N+T + +K + +L + + P+KY W+ Y A + W EV +
Sbjct: 37 ENSTTRKAPEVTDKGDEEVVEPLLANNPNRFVIFPIKYHDIWDFYKRAVASFWTVEEVDL 96
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
D W+ L+D ER I R L FFA+S+ +V N+V + + PE R + Q
Sbjct: 97 SKDYQHWE---NLSDGERFFISRVLAFFAASDGIVNENLVERFAQEVQVPEARFFYGFQI 153
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS + ++ + D+ E LFN E I KA+WAL++
Sbjct: 154 MIENIHSEMYSKMVETYIRDDNERKKLFNAINEFEFIKKKADWALKWI------------ 201
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D + + L F V EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 202 ADKQAPYAERLIAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTHSNELISRDEGLHRDFA 260
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + +K K +++ ++ EA +E Y E +P G +G+N QY+++
Sbjct: 261 CLMFSHLKK-------KPNKERIYEIIREAVKIEQEYLTEALPVGLIGMNCELMSQYIEY 313
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+A+ ++ L+ ENPF +M+ I ++ + NFFE RV+EYQ+ L D
Sbjct: 314 VADHLLTELKCPKLYNM-ENPFDFMAR-ISIEAKTNFFEKRVSEYQKAGVLSTD 365
>gi|146298285|ref|YP_001192876.1| ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae
UW101]
gi|146152703|gb|ABQ03557.1| Ribonucleoside-diphosphate reductase [Flavobacterium johnsoniae
UW101]
Length = 325
Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats.
Identities = 92/334 (27%), Positives = 157/334 (47%), Gaps = 28/334 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P+K+ WE Y + W E+ + DL W N L DDER
Sbjct: 5 EPILQENKNRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWN--NKLNDDERYF 62
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E ELFN P+I K WAL++ ++ S + + + EG
Sbjct: 123 EAEKTELFNALEVFPAIAKKGEWALKWIESDS---------------FAERLIAFAAVEG 167
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE +H +F + + N K +
Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHLHNHHL------VNKVPK 221
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ + ++ +A +E + E++P +G+NA QY++F+A+R ++G E ++ + N
Sbjct: 222 ERIKEIIVDALDIERQFVTESLPVSLIGMNAGLMTQYLEFVADRLLVELGCERVYG-SAN 280
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
PF +M +I L+ + NFFE RV EYQ+ + D
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVAEYQKSGVMNTD 313
>gi|294950175|ref|XP_002786498.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239900790|gb|EER18294.1| ribonucleotide reductase small subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 350
Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats.
Identities = 92/331 (27%), Positives = 151/331 (45%), Gaps = 28/331 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + P+KY WE Y + W E+ + DL W+ L+D++R
Sbjct: 15 EDLLKENPHRYVMFPIKYLAIWEMYKKHEASFWTAEEIDLSQDLRDWE---NLSDNDRHF 71
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + D
Sbjct: 72 ISHVLAFFAASDGIVLENLSAKFSGEVQCPEARAFYGFQIAMENIHSETYSLLIDNYIKD 131
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ +F VPS+ KA WAL + D F + L + EG
Sbjct: 132 PEQKDKIFRAIETVPSVRKKAEWALSWIN-------------DDNCFAERLIA-FACVEG 177
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
+ F F I L + M G+ + I RDE LH +F + N +T+
Sbjct: 178 ILFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHADFACLLY------NMLKYTRLPD 231
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ ++ A +E + E++P +G+N+ +Y++F+A+R +G L+ T N
Sbjct: 232 ERVHEIVRGAVEVERVFISESLPVSLIGMNSQLMCRYIEFVADRLLVALGHPKLYNAT-N 290
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
PF WM ++I L+ + NFFE RV EYQ+G +
Sbjct: 291 PFDWM-KMISLQGKTNFFEKRVGEYQKGGVM 320
>gi|197101489|ref|NP_001125944.1| ribonucleoside-diphosphate reductase subunit M2 B [Pongo abelii]
gi|75041724|sp|Q5R9G0|RIR2B_PONAB RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B
gi|55729743|emb|CAH91600.1| hypothetical protein [Pongo abelii]
Length = 351
Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats.
Identities = 98/350 (28%), Positives = 163/350 (46%), Gaps = 28/350 (8%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
+ S E + +++ +L S + P++Y W+ Y A + W EV +
Sbjct: 13 DQDERSSSDTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Q
Sbjct: 73 KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 129
Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
E VHS + +I + D + LFN +P + KA+WAL++
Sbjct: 130 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------------ 177
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ + V + EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 178 -DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 236
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+ + K +++ R ++ +A +E + E +P G +G+N +QY++F+
Sbjct: 237 LMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFV 289
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
A+R ++G +F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 290 ADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337
>gi|15826569|pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats.
Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 27/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER
Sbjct: 94 KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 151
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 152 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 211
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WAL++ Q DAD F + L +
Sbjct: 212 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 258
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + +K +
Sbjct: 259 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 313
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ EA +E Y + +P +G+NA QY++F+A+R G + +K
Sbjct: 314 --AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV- 370
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L + NFFE RV++YQ+ +
Sbjct: 371 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 403
>gi|187903099|ref|YP_001883390.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca
domestica salivary gland hypertrophy virus]
gi|187384748|gb|ACD03521.1| ribonucleoside diphosphate reductase small subunit, rr2 [Musca
domestica salivary gland hypertrophy virus]
Length = 343
Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats.
Identities = 86/336 (25%), Positives = 156/336 (46%), Gaps = 27/336 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
++ ++ +L L P++Y W Y A + W EV + D+ W+ L+
Sbjct: 11 EMDTSNEPLLQENPRRFVLFPIEYEDIWRMYKKAEASFWTVEEVDLSKDMNDWE---RLS 67
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
E+ IK L FFA+S+ +V N++ + + E R + Q E VHS + +I
Sbjct: 68 SGEQHFIKHVLAFFAASDGIVNENLLERFAQEVQVSEARCFYGFQIAMENVHSEMYSVLI 127
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ + E LFN +P++ KA+WA + + F + L
Sbjct: 128 DTYIRERAERERLFNAIETIPAVKRKADWAFNWITS------------TTATFGERLLA- 174
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ V EG++F FA I L + M G+ + I RDE +H +F + + + + P
Sbjct: 175 FAVVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVLLFKRYLVNRP-- 232
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+++ ++ EA +E + + +P +G+N QY++F+A+R +G++ +
Sbjct: 233 ----SEERVGEIVREAVTIEQEFLTDALPVSLIGMNCGLMSQYIEFVADRLLVDLGMKRI 288
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+ T+NPF +M +I L + NFFE RV +YQ+
Sbjct: 289 YN-TKNPFDFMD-MISLDGKTNFFEKRVGDYQRLGV 322
>gi|75076588|sp|Q4R741|RIR2B_MACFA RecName: Full=Ribonucleoside-diphosphate reductase subunit M2 B
gi|67969468|dbj|BAE01083.1| unnamed protein product [Macaca fascicularis]
Length = 351
Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats.
Identities = 97/346 (28%), Positives = 162/346 (46%), Gaps = 28/346 (8%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
S + + +++ +L S + P++Y W+ Y A + W EV + DL
Sbjct: 17 RSSSDTNDNEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLP 76
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W N L DE+ I L FFA+S+ +V N+V + + PE R + Q E V
Sbjct: 77 HW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENV 133
Query: 127 HSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
HS + +I + D + LFN +P + KA+WAL++ +
Sbjct: 134 HSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA-------------DRK 180
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ V + EG++F FA I L + M G+ + I RDE LH +F +
Sbjct: 181 STFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ 240
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ K +++ R ++ +A +E + E +P G +G+N +QY++F+A+R
Sbjct: 241 YLVN-------KPSEERVREIIVDAVQIEQEFLTEALPVGLIGMNCILMKQYIEFVADRL 293
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
++G +F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 294 LVELGFSKIF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337
>gi|156847978|ref|XP_001646872.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM
70294]
gi|156117553|gb|EDO19014.1| hypothetical protein Kpol_2002p85 [Vanderwaltozyma polyspora DSM
70294]
Length = 400
Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats.
Identities = 100/343 (29%), Positives = 160/343 (46%), Gaps = 27/343 (7%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
+Q E + ++ +L A + L P++Y +E Y A + W E+ + DL W
Sbjct: 63 VQRHELKEKETEEPLLVADPNRKILFPIQYPDIYEAYKRAEASFWTAEEIDLSKDLHDWN 122
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
N + ++ER I R L FFA+S+ +V N+ E + + Q E +HS
Sbjct: 123 --NRMNENERFFISRVLAFFAASDGIVNENLTENFSVEAQILEAKCFYGFQIMIENIHSE 180
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
T+ +I + D E LFN +P I KA WAL++ D++ F
Sbjct: 181 TYSLLIDTYIKDPKESQYLFNAIETIPQIKEKAEWALRWIN------------DSEALFA 228
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ L + EG++F FA I L + M G+ + I RDE LH +F + + IK
Sbjct: 229 ERLVA-FAAIEGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLLFSHIK 287
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ ++ EA +E Y + +P +G+NA QY++F+A+R
Sbjct: 288 NKPDP-------AIVEKIVTEAVEIEKRYFTDALPVALLGMNADLMNQYVEFVADRLLVA 340
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
G E +FK ENPF +M E I L + NFFE RV++YQ+ + +
Sbjct: 341 FGNEKVFKV-ENPFDFM-ENISLAGKTNFFEKRVSDYQKASVI 381
>gi|224100309|ref|XP_002311826.1| predicted protein [Populus trichocarpa]
gi|222851646|gb|EEE89193.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 158/351 (45%), Gaps = 33/351 (9%)
Query: 7 LSPIQAGEKRVNVDDK----RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
+ ++ G + + ++ +L ++ + P++Y WE Y A + W EV +
Sbjct: 1 MGSLRNGTESERIREEDKQEPILKEQNQRFCMFPIRYKELWEMYKKAEASFWTAEEVDLS 60
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D+ W+ L+D E+ I L FFA+S+ +V N+ + PE R + Q
Sbjct: 61 RDMQQWE---ALSDSEKHFISHVLAFFAASDGIVLENLAARFLYDVQIPEARAFYGFQIA 117
Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
E +HS + ++ + D E LFN +P + KA WAL + Q+
Sbjct: 118 MENIHSEMYSLLLETYIKDSREKHRLFNAIENIPCVAEKAKWALDWIQS----------- 166
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ V + EG++F F I L + M G+ + I RDE LH +F
Sbjct: 167 ---SMVFAERLVAFACIEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 223
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+ + ++ + QK ++ EA +E + E +P +G+NA Y++F+
Sbjct: 224 LLYSLLQRQLHW-------QKVYHIVGEAVEIETKFVCEALPCALIGMNATLMGDYIKFV 276
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
A+R +G + + ENPF WM E I L+ + NFFE RV +YQ+ + +
Sbjct: 277 ADRLLVALGYQKKYNV-ENPFDWM-EFISLQGKANFFERRVGDYQKASVMS 325
>gi|313213932|emb|CBY40745.1| unnamed protein product [Oikopleura dioica]
Length = 418
Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats.
Identities = 89/338 (26%), Positives = 155/338 (45%), Gaps = 29/338 (8%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+ + +L + + P++Y W Y A + W EV + D+ WK L
Sbjct: 87 ADFDPQLEPLLKENNQRFVIFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWK---KL 143
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
+E+ IK L FFA+S+ +V N+V + PE R + Q E +HS + +
Sbjct: 144 KKEEQFFIKHVLAFFAASDGIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKL 203
Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
I +L D E LFN +P+I KA+WAL++ + S +
Sbjct: 204 IENLVHDTKEKMGLFNAIETMPAIKKKADWALKWIGADAPYSVR--------------VI 249
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
+ EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 250 AFAAVEGIFFSGSFAAIFWLKKRGLMPGVTFSNELISRDEGLHTDFACLMYKHMVQ---- 305
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
K Q++ ++ +A +E + + +P +G+N + Y++F+A+R ++
Sbjct: 306 ---KPSQEQIIAIIRDAVSIEQEFLTDALPVRLIGMNCDLMKTYIEFVADRLLVELDCPK 362
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
++K ENPF +M E+I L+ + NFFE +V+EY + +
Sbjct: 363 IYKV-ENPFDFM-EMISLEGKTNFFEKKVSEYARAGVM 398
>gi|266919|sp|P29883|RIR2_VACCP RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|335710|gb|AAA48294.1| F14 [Vaccinia virus]
Length = 319
Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats.
Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N +T DE+
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKVTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + + E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFRMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|330994651|ref|ZP_08318574.1| putative ribonucleoside-diphosphate reductase small subunit
[Gluconacetobacter sp. SXCC-1]
gi|329758292|gb|EGG74813.1| putative ribonucleoside-diphosphate reductase small subunit
[Gluconacetobacter sp. SXCC-1]
Length = 365
Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats.
Identities = 89/352 (25%), Positives = 168/352 (47%), Gaps = 21/352 (5%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
++T ++ A + + ++ +L A P +Y WA++ +L+ HW+P EVP+
Sbjct: 28 DSTAMTDTAAPVAQPPM-EQSLLTANP---VYKPFRYPWAYDAWLTQQRVHWLPEEVPLA 83
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
DD+ W LT+ ER ++ + FF S+ V N + + E L +
Sbjct: 84 DDVKDWH--RTLTESERHLVTQIFRFFTQSDVEVNNCYMKHYSQVFKPTEVLMMLSAFSN 141
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
E +H + +++ ++G+ E E ++ + + + K ++ Q+ + +
Sbjct: 142 IETIHIAAYSHLLDTIGMPETE-YSAFLKYKEMKDKYDYMQQF------------SVSDN 188
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
+ + L F EG+ + FA +L+ R NK+ G+ + + +RDESLH + +
Sbjct: 189 YQIARTLAAFGAFTEGLQLFASFAILLNFPRHNKLKGMGQIVSWSVRDESLHCDSMARLF 248
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIAN 301
ENP +WT + R + + E A+ + G GL+A ++Y++F+AN
Sbjct: 249 RVFVQENPEIWTDTLRDDIRQICRDIVEHEDAFIDLSFEMGAVEGLDAGQVKRYIRFVAN 308
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
RR Q+GL+ ++ NP PW+ E+++ + NFFE R TEY + + WD
Sbjct: 309 RRLGQLGLDGIYDIATNPLPWVDEMVNAVEHANFFENRATEYSRASTTGTWD 360
>gi|146090970|ref|XP_001466408.1| ribonucleoside-diphosphate reductase small chain [Leishmania
infantum JPCM5]
gi|134070770|emb|CAM69127.1| putative ribonucleoside-diphosphate reductase small chain
[Leishmania infantum JPCM5]
Length = 388
Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats.
Identities = 90/340 (26%), Positives = 157/340 (46%), Gaps = 28/340 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+ N +++ + L P++Y W KY + W E+ + +D+ W +
Sbjct: 60 AEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAT--- 116
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L D ER IK L FFA S+ +V N+ + PE R + Q E +HS T+
Sbjct: 117 LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSV 176
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
++ + D E L + + +P I KA WA+++ + F + L
Sbjct: 177 LLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGS-------------SASFQERLI 223
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
F V EG++F F + L + M G+ + I RDE LH +F + N
Sbjct: 224 GFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------NS 276
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
H+ K +++ ++ +A +E + + +P +G+NA QY++F+A+R +G E
Sbjct: 277 HIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEFVADRLLVSLGEE 336
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++ T+ PF +M E+I L+ + NFFE +V EYQ+ +
Sbjct: 337 KHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 374
>gi|224000239|ref|XP_002289792.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975000|gb|EED93329.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats.
Identities = 91/327 (27%), Positives = 157/327 (48%), Gaps = 28/327 (8%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+ L P+ Y W Y + W E+ + DL+ W L DER I
Sbjct: 7 DEEGSRFSLFPIAYPDLWSMYKQHVASFWTADEIDLSADLSDWHK--KLNPDERHFISMV 64
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--- 142
L FFA ++ +V N+ R ++ PE R + Q E++H T+ +I + D
Sbjct: 65 LAFFAGADGIVVENLAERFCREVTVPEARCFYGFQMAMESIHQETYCLLIDTYITDPKVR 124
Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
LF+ + VPS+ KA+WA +Y + F + L F V EG++F
Sbjct: 125 ERLFSAHATVPSVERKASWAQRYIGS-------------KASFAERLVAFAAV-EGIFFS 170
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
F I L + M G+ + I RDE LH +F + +++K++ Q++ +
Sbjct: 171 GSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCSFACQLYSKLKLKLS-------QEEIQ 223
Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
T+++EA +E ++ + +P +G+N+ QY++F+A+R +G + ++ ++NPF W
Sbjct: 224 TIINEAVDVEKSFICDALPVSLIGMNSRLMAQYIEFVADRMLTDLGYQAMYG-SKNPFDW 282
Query: 323 MSEVIDLKKEKNFFETRVTEYQQGAEL 349
M +I L+ + NFFE RV EYQ+ +
Sbjct: 283 MD-MISLEGKTNFFEKRVGEYQKSGVM 308
>gi|194755279|ref|XP_001959919.1| GF11796 [Drosophila ananassae]
gi|190621217|gb|EDV36741.1| GF11796 [Drosophila ananassae]
Length = 393
Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats.
Identities = 88/342 (25%), Positives = 155/342 (45%), Gaps = 28/342 (8%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++ + + +L + P++Y W+ Y A + W EV + DL W
Sbjct: 62 MEKSATPFDPSLEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVDLSKDLTDWH 121
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
L DDER I L FFA+S+ +V N+V + + E R + Q E VHS
Sbjct: 122 ---RLKDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSE 178
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
+ +I + D + LFN +P++ KA+WAL + +
Sbjct: 179 MYSVLIDTYIRDPHQREYLFNAIETMPAVKRKADWALAWISS-------------KSANF 225
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 226 GERIIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLV 285
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
K +++ ++ +A +E + + +P +G+N QY++F+A+R +
Sbjct: 286 Q-------KPRRERIIEIIRDAVDIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVE 338
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+G+ ++ T+NPF +M E+I L + NFFE +V EYQ+
Sbjct: 339 LGVGKIYN-TKNPFNFM-EMISLDGKTNFFEKKVGEYQRMGV 378
>gi|113195221|ref|YP_717351.1| ribonucleotide reductase small subunit [Taterapox virus]
gi|90660497|gb|ABD97610.1| ribonucleotide reductase small subunit [Taterapox virus]
Length = 319
Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats.
Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|7023557|dbj|BAA92005.1| unnamed protein product [Homo sapiens]
Length = 351
Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats.
Identities = 98/350 (28%), Positives = 163/350 (46%), Gaps = 28/350 (8%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
+ S E + +++ +L S + P++Y W+ Y A + W EV +
Sbjct: 13 DQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Q
Sbjct: 73 KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 129
Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
E VHS + +I + D + LFN +P + KA+WAL++
Sbjct: 130 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------------ 177
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ + V + EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 178 -DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 236
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+ + K +++ R ++ +A +E + E +P G +G+N +QY++F+
Sbjct: 237 LMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGVNCILMKQYIEFV 289
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
A+R ++G +F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 290 ADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337
>gi|9631087|ref|NP_047757.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
MNPV]
gi|3822355|gb|AAC70306.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
MNPV]
Length = 348
Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats.
Identities = 91/342 (26%), Positives = 152/342 (44%), Gaps = 28/342 (8%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
A E+ + + +L + P++Y W Y A + W EV + D + W+
Sbjct: 19 PAPERPFDPRAEPLLRENPRRFVIFPIQYPDMWRMYKKAEASFWTVEEVDLSKDTSDWE- 77
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
L D+ER IK L FFA+S+ +V N+V + + E R + Q E VHS
Sbjct: 78 --RLNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVAEARCFYGFQIAMENVHSEM 135
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I + E L N +P + KA WAL++ + F +
Sbjct: 136 YSTLIDTYVRSSEEKLRLLNAIETMPCVKEKAEWALRWIAG------------REAAFGE 183
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
L F V EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 184 RLVAFAAV-EGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFKHLVQ 242
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
+ + R ++ +A +E + E +P +GLN + QY++F+A+R ++
Sbjct: 243 -------RPSAARVREIVTDAVAIEQRFLTEALPVRLLGLNCETMSQYIEFVADRLLLEL 295
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ T NP +M+ +I L+ + NFFE +V EYQ+ +
Sbjct: 296 VGAKHYN-TPNPLDFMN-LISLEGKTNFFEKKVGEYQKFGVM 335
>gi|313235850|emb|CBY19835.1| unnamed protein product [Oikopleura dioica]
Length = 382
Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats.
Identities = 89/338 (26%), Positives = 155/338 (45%), Gaps = 29/338 (8%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+ + +L + + P++Y W Y A + W EV + D+ WK L
Sbjct: 51 ADFDPQLEPLLKENNQRFVIFPIQYHDIWRMYKKAVASFWTTEEVDLGRDMDDWK---KL 107
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
+E+ IK L FFA+S+ +V N+V + PE R + Q E +HS + +
Sbjct: 108 KKEEQFFIKHVLAFFAASDGIVNENLVDRFMSEIQIPEARSFYGFQIMMENIHSEMYAKL 167
Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
I +L D E LFN +P+I KA+WAL++ + S +
Sbjct: 168 IENLVHDTKEKMGLFNAIETMPAIKKKADWALKWIGADAPYSVR--------------VI 213
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
+ EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 214 AFAAVEGIFFSGSFAAIFWLKKRGLMPGVTFSNELISRDEGLHTDFACLMYKHMVQ---- 269
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
K Q++ ++ +A +E + + +P +G+N + Y++F+A+R ++
Sbjct: 270 ---KPSQEQIIAIIRDAVSIEQEFLTDALPVRLIGMNCDLMKTYIEFVADRLLVELDCPK 326
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
++K ENPF +M E+I L+ + NFFE +V+EY + +
Sbjct: 327 IYKV-ENPFDFM-EMISLEGKTNFFEKKVSEYARAGVM 362
>gi|297265423|ref|XP_001091447.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 [Macaca
mulatta]
Length = 704
Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats.
Identities = 86/335 (25%), Positives = 139/335 (41%), Gaps = 58/335 (17%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
V+D+ +L + P++Y W+ Y A + W EV + D+ W+S L +E
Sbjct: 412 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKPEE 468
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 469 RYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTY 528
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D E LFN +P + KA+WAL++ D + + + + F V
Sbjct: 529 IKDPKEREFLFNAIETMPCVKKKADWALRWI------------GDKEATYGERVVAFAAV 576
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + M G+ + I RDE
Sbjct: 577 -EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEVSLNQIIGXXXXXXXX-------- 627
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+G+N +QY++F+A+R ++G +F+
Sbjct: 628 -----------------------------IGMNCTLMKQYIEFVADRLMLELGFSKVFRV 658
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 659 -ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 691
>gi|3220181|gb|AAC23560.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis]
Length = 354
Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats.
Identities = 92/352 (26%), Positives = 158/352 (44%), Gaps = 28/352 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A + P + N +++ + L P++Y W KY + W E+ +
Sbjct: 14 AAGAEVLPADKVAEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 73
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
+D+ W L D ER IK L FFA S+ +V N+ + PE R + Q
Sbjct: 74 GNDMKDW---AALNDGERHFIKHVLAFFAGSDGIVVENLAQRFMSDVKVPEARAFYGFQL 130
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS T+ ++ + D E L + + +P I KA WA+++ +
Sbjct: 131 MMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQRKAEWAVRWIGS---------- 180
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
F + L F V EG++F F + L + M G+ + I RDE LH +F
Sbjct: 181 ---SASFQERLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFA 236
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ N H+ K +++ ++ +A +E + + +P +G+NA QY++F
Sbjct: 237 CLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEF 290
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+A+R +G E + T+ PF +M E+I L+ + NFFE +V EYQ+ +
Sbjct: 291 VADRLLVSLGEEKHYNSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 340
>gi|66275840|ref|YP_232925.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|132629|sp|P11158|RIR2_VACCV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|335624|gb|AAA48244.1| F4L protein [Vaccinia virus]
gi|335809|gb|AAA88680.1| ribonucleotide reductase (EC 1.17.4.1) small subunit [Vaccinia
virus]
gi|29692149|gb|AAO89322.1| ribonucleotide reductase small subunit [Vaccinia virus WR]
Length = 319
Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats.
Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|885717|gb|AAA69333.1| C8L [Variola virus]
gi|885826|gb|AAA69439.1| C8L [Variola virus]
gi|94483878|gb|ABF22994.1| ribonucleotide reductase small subunit [Variola virus]
gi|94484081|gb|ABF23196.1| ribonucleotide reductase small subunit [Variola virus]
gi|94485084|gb|ABF24194.1| ribonucleotide reductase small subunit [Variola virus]
gi|94485286|gb|ABF24395.1| ribonucleotide reductase small subunit [Variola virus]
gi|94485489|gb|ABF24597.1| ribonucleotide reductase small subunit [Variola virus]
gi|94485894|gb|ABF25000.1| ribonucleotide reductase small subunit [Variola virus]
gi|94487109|gb|ABF26209.1| ribonucleotide reductase small subunit [Variola virus]
gi|94487515|gb|ABF26613.1| ribonucleotide reductase small subunit [Variola virus]
gi|94487716|gb|ABF26813.1| ribonucleotide reductase small subunit [Variola virus]
gi|94488123|gb|ABF27218.1| ribonucleotide reductase small subunit [Variola virus]
gi|94488323|gb|ABF27417.1| ribonucleotide reductase small subunit [Variola virus]
gi|94488523|gb|ABF27616.1| ribonucleotide reductase small subunit [Variola virus]
gi|94488724|gb|ABF27816.1| ribonucleotide reductase small subunit [Variola virus]
gi|94488925|gb|ABF28016.1| ribonucleotide reductase small subunit [Variola virus]
gi|94489125|gb|ABF28215.1| ribonucleotide reductase small subunit [Variola virus]
gi|94489324|gb|ABF28413.1| ribonucleotide reductase small subunit [Variola virus]
gi|94489527|gb|ABF28615.1| ribonucleotide reductase small subunit [Variola virus]
gi|94489726|gb|ABF28813.1| ribonucleotide reductase small subunit [Variola virus]
gi|94490135|gb|ABF29220.1| ribonucleotide reductase small subunit [Variola virus]
gi|109724070|gb|ABG43196.1| ribonucleotide reductase small subunit [Variola virus]
gi|109724681|gb|ABG43804.1| ribonucleotide reductase small subunit [Variola virus]
gi|109724885|gb|ABG44007.1| ribonucleotide reductase small subunit [Variola virus]
gi|109725088|gb|ABG44209.1| ribonucleotide reductase small subunit [Variola virus]
gi|109725293|gb|ABG44413.1| ribonucleotide reductase small subunit [Variola virus]
gi|109725496|gb|ABG44615.1| ribonucleotide reductase small subunit [Variola virus]
gi|109725700|gb|ABG44818.1| ribonucleotide reductase small subunit [Variola virus]
gi|109725903|gb|ABG45020.1| ribonucleotide reductase small subunit [Variola virus]
gi|109726107|gb|ABG45223.1| ribonucleotide reductase small subunit [Variola virus]
gi|109726310|gb|ABG45425.1| ribonucleotide reductase small subunit [Variola virus]
gi|109726513|gb|ABG45627.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635013|gb|ABU91466.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635031|gb|ABU91483.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635049|gb|ABU91500.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635067|gb|ABU91517.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635103|gb|ABU91551.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635121|gb|ABU91568.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635139|gb|ABU91585.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635158|gb|ABU91603.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635176|gb|ABU91620.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635194|gb|ABU91637.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635212|gb|ABU91654.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635230|gb|ABU91671.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635248|gb|ABU91688.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635266|gb|ABU91705.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635284|gb|ABU91722.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635320|gb|ABU91756.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635338|gb|ABU91773.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635356|gb|ABU91790.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635374|gb|ABU91807.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635392|gb|ABU91824.1| ribonucleotide reductase small subunit [Variola virus]
gi|157739431|gb|ABU91739.1| ribonucleotide reductase small subunit [Variola virus]
Length = 319
Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats.
Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIKFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|46446983|ref|YP_008348.1| ribonucleoside-diphosphate reductase small chain [Candidatus
Protochlamydia amoebophila UWE25]
gi|46400624|emb|CAF24073.1| probable ribonucleoside-diphosphate reductase small chain
[Candidatus Protochlamydia amoebophila UWE25]
Length = 323
Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats.
Identities = 90/332 (27%), Positives = 152/332 (45%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D L P+ + W+ Y A + W E+ + DL W L +DE+
Sbjct: 5 EPILRENKDRFVLFPINHAEIWQMYKKAEASFWTAEEIDLTSDLLDWD--RKLNNDEKYF 62
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + + PE R + Q E +HS + +I + D
Sbjct: 63 IKHILAFFAASDGIVNENLAVNFMSEVQYPEARCFYGFQIMMENIHSEAYSLLIDTYIKD 122
Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
LF +P I+ KA+WAL++ + F + L F V EG
Sbjct: 123 PTDKNRLFKALETIPCISNKADWALRWI--------------SQGSFSERLVAFAAV-EG 167
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G++ + I RDE LH +F + +Q+ + P
Sbjct: 168 IFFSGSFCSIFWLKKRGLMPGLSFANELISRDEGLHCDFACLLYSQLNNKLPL------- 220
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ + ++ A +E + + +P +G+NA QY++F+A+R +G L+ N
Sbjct: 221 ETLQAIISHAVAIEKEFVQDALPVRLIGMNATLMCQYIEFVADRLLVALGSPKLYNVD-N 279
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M +I + + NFFE RV+EYQ+ +
Sbjct: 280 PFDFMD-LISMPGKTNFFERRVSEYQKSGVMS 310
>gi|313675915|ref|YP_004053911.1| ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126]
gi|312942613|gb|ADR21803.1| Ribonucleoside-diphosphate reductase [Marivirga tractuosa DSM 4126]
Length = 331
Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats.
Identities = 90/334 (26%), Positives = 155/334 (46%), Gaps = 29/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +L D L P+++ WE Y A + W E+ + D W+ LT+ E
Sbjct: 8 QDEPILKENKDRFVLFPIQHKDIWEFYKMAEASFWTAEEIDLSQDQKDWE---NLTEGET 64
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
IK L FFA+S+ +V N+ + E + + Q E VHS T+ +I +
Sbjct: 65 HFIKHVLAFFAASDGIVNENLAENFVAEVQYTEAKFFYGFQIAMENVHSETYSLLIDTYV 124
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN + + KA+WAL++ + + + +
Sbjct: 125 KDNKEKDKLFNAIDTMDCVKKKADWALRWIDEGN---------------YAERLIAFAAV 169
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F F I L + M G+ + I RDE LH +F + N HL K
Sbjct: 170 EGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY------NDHLVNKL 223
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++K ++ +A +E + +++P +G+NA QY++F+A+R ++ + ++ +
Sbjct: 224 SKEKVTAIITDAVEIEKEFVTDSLPVKLIGMNADLMCQYIEFVADRLLQELRCDKVYG-S 282
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M E+I L+ + NFFE RV +YQ+ +K
Sbjct: 283 SNPFDFM-EMISLQGKTNFFEKRVGDYQKAGVMK 315
>gi|3914644|sp|O46310|RIR2_LEIAM RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
AltName: Full=Ribonucleotide reductase M2 subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|2828563|gb|AAC08302.1| ribonucleotide reductase M2 subunit [Leishmania amazonensis]
Length = 345
Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats.
Identities = 93/352 (26%), Positives = 159/352 (45%), Gaps = 28/352 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A + P + N +++ + L P++Y W KY + W E+ +
Sbjct: 5 AAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 64
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
+D+ W + L D ER IK L FFA S+ +V N+ + PE R + Q
Sbjct: 65 GNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQL 121
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS T+ ++ + D E L + + +P I KA W +++ +
Sbjct: 122 MMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWPVRWIGS---------- 171
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
F Q L F V EG++F F + L + M G+ + I RDE LH +F
Sbjct: 172 ---SASFQQRLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFA 227
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ N H+ K +++ ++ +A +E + + +P +G+NA QY++F
Sbjct: 228 CLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEF 281
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+A+R +G E ++ T+ PF +M E+I L+ + NFFE RV EYQ+ +
Sbjct: 282 VADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMS 331
>gi|91081999|ref|XP_969259.1| PREDICTED: similar to AGAP006818-PA [Tribolium castaneum]
gi|270007377|gb|EFA03825.1| hypothetical protein TcasGA2_TC013940 [Tribolium castaneum]
Length = 374
Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats.
Identities = 90/336 (26%), Positives = 158/336 (47%), Gaps = 27/336 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ + + +L + P++Y W+KY A + W EV + DL WK N L
Sbjct: 49 EFDPELEPLLQENPRRFVVFPIQYPDIWDKYKQAEASFWTTEEVDLSKDLDDWK--NKLN 106
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
DER I L FFA+S+ +V N+V + + E R + Q E +HS + +I
Sbjct: 107 SDERYFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAIENIHSEMYSMLI 166
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ + E LFN +P + KA+WAL + + + V
Sbjct: 167 ETYISEPQEKEFLFNAIETLPCVKKKADWALLWINS-------------KNATFGERIVA 213
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++F FA I L + N M G+ + I RDE LH +F + + +
Sbjct: 214 FAAVEGIFFSGSFASIFWLKKRNLMPGLTFSNELISRDEGLHCDFACLMFSHLVQ----- 268
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
K +++ ++++ +A +E + E +P +G+N QY++F+A+R ++G E +
Sbjct: 269 --KPSKERIQSIIQDAVKIEKEFLTEALPVSMIGMNCALMCQYIEFVADRLLGELGCEKI 326
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+ ++NPF +M+ +I + + NFFE +V EYQ+
Sbjct: 327 YN-SQNPFDFMT-IISNEGKTNFFEKKVGEYQKSGV 360
>gi|221480670|gb|EEE19110.1| ribonucleotide-diphosphate reductase, small subunit, putative
[Toxoplasma gondii GT1]
Length = 391
Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats.
Identities = 95/332 (28%), Positives = 154/332 (46%), Gaps = 29/332 (8%)
Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
+L A +LP+++ WE Y + W E+ + D+ W++ L ++E+ I
Sbjct: 74 PLLMANPHRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFI 130
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
K L FFA+S+ +V N+ + PE R + Q E +HS T+ +I DE
Sbjct: 131 KYVLAFFAASDGIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDE 190
Query: 143 GE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
E LF+ V ++ KA WA + F + L + EG+
Sbjct: 191 EEKLQLFDAVHNVKAVAVKAAWAAMWIN-------------NRNCFAERLVG-FACVEGI 236
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
F F I L + M G+ + I RDE LH +F + +Q+K + P +
Sbjct: 237 LFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHADFACLLYSQLKHKLPD-------K 289
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
+ M+ EA +E A+ E +P +G+N S QY++F+A+R +G+ +F + NP
Sbjct: 290 VVQDMVREAVTVERAFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKIF-FATNP 348
Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
F WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 349 FDWM-ELISLQGKTNFFEKRVGEYQKAGVMAD 379
>gi|237845387|ref|XP_002371991.1| ribonucleotide-diphosphate reductase, small subunit, putative
[Toxoplasma gondii ME49]
gi|211969655|gb|EEB04851.1| ribonucleotide-diphosphate reductase, small subunit, putative
[Toxoplasma gondii ME49]
gi|221501644|gb|EEE27410.1| ribonucleotide-diphosphate reductase, small subunit, putative
[Toxoplasma gondii VEG]
Length = 391
Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats.
Identities = 95/332 (28%), Positives = 154/332 (46%), Gaps = 29/332 (8%)
Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
+L A +LP+++ WE Y + W E+ + D+ W++ L ++E+ I
Sbjct: 74 PLLMANPHRWVILPIQHHAIWEMYKKQEASFWTAEEIDLAQDMTHWET---LGENEKHFI 130
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
K L FFA+S+ +V N+ + PE R + Q E +HS T+ +I DE
Sbjct: 131 KYVLAFFAASDGIVLENLAEKFLTEIQVPEARAFYGFQIAMENIHSETYSLLIDQYIRDE 190
Query: 143 GE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
E LF+ V ++ KA WA + F + L + EG+
Sbjct: 191 EEKLQLFDAVHNVKAVAVKAAWAAMWIN-------------NRNCFAERLVG-FACVEGI 236
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
F F I L + M G+ + I RDE LH +F + +Q+K + P +
Sbjct: 237 LFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHADFACLLYSQLKHKLPD-------K 289
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
+ M+ EA +E A+ E +P +G+N S QY++F+A+R +G+ +F + NP
Sbjct: 290 VVQDMVREAVTVERAFICEALPVDLIGMNNRSMAQYIEFVADRLLTSLGVPKIF-FATNP 348
Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
F WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 349 FDWM-ELISLQGKTNFFEKRVGEYQKAGVMAD 379
>gi|19113338|ref|NP_596546.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces
pombe 972h-]
gi|9297110|sp|P36603|RIR2_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|3378511|emb|CAA20100.1| ribonucleotide reductase small subunit Suc22 [Schizosaccharomyces
pombe]
Length = 391
Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 154/339 (45%), Gaps = 27/339 (7%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
K+ + D+ +L L P+KY W+ Y A + W E+ + DL W N L
Sbjct: 59 KKEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWD--NKL 116
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
DER I L +FA+S+ +V N++ + PE R Q E +HS T+ +
Sbjct: 117 NADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLL 176
Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
+ + + E F+ + SI AKA WAL++ D D + L
Sbjct: 177 LDTYIREPKEKQRHFDAILTMGSIKAKAKWALRWIN------------DEDSTYAIRLVA 224
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
F V EG++F FA I L + M G+ + I RDE LH +F + + +K
Sbjct: 225 FAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLMFSHLK----- 278
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+ ++ ++ EA +E Y + +P +G+N QY++F+A+R +G +
Sbjct: 279 --HRPGRKVVEAIIVEAVDIEKEYFTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDK 336
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ T NPF +M E I L + NFFE +V++YQ +
Sbjct: 337 YYNVT-NPFDFM-ENISLAGKTNFFEKKVSDYQIAGVMS 373
>gi|74025548|ref|XP_829340.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei]
gi|70834726|gb|EAN80228.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei]
Length = 337
Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats.
Identities = 90/333 (27%), Positives = 156/333 (46%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P+KY W+KY A ++ W E+ + +D+ W+ L D ER
Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKEAESSIWTVEEIDLGNDMTDWE---KLDDGERH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFA+S+ +V N+ + PE R + Q E +H T+ +I + +
Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHCETYSVLIDTYVV 132
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E L + R +P I KA WA+++ + +S F L F V E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAAV-E 178
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + + K
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY------IVNKLP 232
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + ++ A +E + + +P +G+N+ QY++F+A+R +G + ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHCN-SK 291
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M +I L+ + NFFE +V EYQ+ +
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323
>gi|291388369|ref|XP_002710634.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like
[Oryctolagus cuniculus]
Length = 339
Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats.
Identities = 99/339 (29%), Positives = 160/339 (47%), Gaps = 28/339 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
N D++ +L S + P++Y W+ Y A + W EV + DL W N
Sbjct: 12 SPDTNEDEEPLLKKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NR 68
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS +
Sbjct: 69 LTSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 128
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D + LFN +P + KA+WAL++ + +
Sbjct: 129 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA-------------DRKSTFGERV 175
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 176 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 232
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G
Sbjct: 233 ----KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLMELGFS 288
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 289 KVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 325
>gi|885759|gb|AAA69374.1| E4L [Variola virus]
gi|5830589|emb|CAB54628.1| E4L protein [Variola minor virus]
gi|94483674|gb|ABF22791.1| ribonucleotide reductase small subunit [Variola virus]
gi|94484287|gb|ABF23401.1| ribonucleotide reductase small subunit [Variola virus]
gi|94485692|gb|ABF24799.1| ribonucleotide reductase small subunit [Variola virus]
gi|94486095|gb|ABF25200.1| ribonucleotide reductase small subunit [Variola virus]
gi|94486298|gb|ABF25402.1| ribonucleotide reductase small subunit [Variola virus]
gi|94486501|gb|ABF25604.1| ribonucleotide reductase small subunit [Variola virus]
gi|94486703|gb|ABF25805.1| ribonucleotide reductase small subunit [Variola virus]
gi|94486906|gb|ABF26007.1| ribonucleotide reductase small subunit [Variola virus]
gi|94487312|gb|ABF26411.1| ribonucleotide reductase small subunit [Variola virus]
gi|94487921|gb|ABF27017.1| ribonucleotide reductase small subunit [Variola virus]
gi|94489931|gb|ABF29017.1| ribonucleotide reductase small subunit [Variola virus]
gi|109724476|gb|ABG43600.1| ribonucleotide reductase small subunit [Variola virus]
gi|156635085|gb|ABU91534.1| ribonucleotide reductase small subunit [Variola virus]
Length = 319
Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats.
Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|297449|emb|CAA46231.1| ribonucleotide reductase, small subunit [Schizosaccharomyces pombe]
gi|447147|prf||1913428B ribonucleotide reductase:SUBUNIT=small
Length = 391
Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 155/339 (45%), Gaps = 27/339 (7%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
K+ + D+ +L L P+KY W+ Y A + W E+ + DL W N L
Sbjct: 59 KKEDELDEVVLRPNPHRFVLFPIKYHEIWQFYKKAEASFWTAEEIDLSKDLVDWD--NKL 116
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
DER I L +FA+S+ +V N++ + PE R Q E +HS T+ +
Sbjct: 117 NADERYFISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLL 176
Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
+ + + E F+ + SI AKA WAL++ D D + L
Sbjct: 177 LDTYIREPKEKQRHFDAILTMGSIKAKAKWALRWIN------------DEDSTYAIRLVA 224
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
F V EG++F FA I L + M G+ + I RDE LH +F + + +K
Sbjct: 225 FAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFACLMFSHLK----- 278
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+ ++ + ++ EA +E Y + +P +G+N QY++F+A+R +G +
Sbjct: 279 --HRPGRKLLKPIIVEAVDIEKEYFTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDK 336
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ T NPF +M E I L + NFFE +V++YQ +
Sbjct: 337 YYNVT-NPFDFM-ENISLAGKTNFFEKKVSDYQIAGVMS 373
>gi|1808636|emb|CAA64118.1| G4L protein [Cowpox virus]
Length = 319
Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats.
Identities = 86/332 (25%), Positives = 150/332 (45%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRDLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ ++++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVKSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|17974949|ref|NP_536463.1| C10L [Monkeypox virus Zaire-96-I-16]
gi|17529816|gb|AAL40494.1|AF380138_36 C10L [Monkeypox virus Zaire-96-I-16]
gi|51342196|gb|AAU01240.1| MPXV-WRAIR030 [Monkeypox virus]
gi|58220500|gb|AAW67788.1| MPXV-SL-030 [Monkeypox virus]
gi|59858836|gb|AAX09131.1| MPXV-COP-030 [Monkeypox virus]
gi|68448710|gb|AAY96833.1| ribonucleotide reductase small subunit [Monkeypox virus]
gi|68448912|gb|AAY97034.1| ribonucleotide reductase small subunit [Monkeypox virus]
gi|68449113|gb|AAY97234.1| ribonucleotide reductase small subunit [Monkeypox virus]
gi|68449313|gb|AAY97433.1| ribonucleotide reductase small subunit [Monkeypox virus]
gi|68449512|gb|AAY97631.1| ribonucleotide reductase small subunit [Monkeypox virus]
gi|300872658|gb|ADK39060.1| ribonucleotide reductase small subunit [Monkeypox virus]
Length = 319
Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats.
Identities = 87/332 (26%), Positives = 147/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R ++ A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRFIITNAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|327269406|ref|XP_003219485.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
[Anolis carolinensis]
Length = 414
Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 158/339 (46%), Gaps = 28/339 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E + +++ +L + P+ Y W+ Y A + W EV + D W N
Sbjct: 87 ENGLKSNEEPLLRKNPRRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKDFPHW---NK 143
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS +
Sbjct: 144 LKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 203
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D E LFN +P + KA+WAL++ + + +
Sbjct: 204 LIDTYIKDPEERDFLFNAIETMPCVKKKADWALRWIR-------------DRKATFGERV 250
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 251 VAFASVEGIFFSGAFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 307
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G
Sbjct: 308 ----KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCTLMKQYIEFVADRLLLELGFS 363
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 364 KVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 400
>gi|132628|sp|P20493|RIR2_VACCC RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|335366|gb|AAA48018.1| putative F4L [Vaccinia virus Copenhagen]
Length = 319
Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats.
Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R+++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|8101697|gb|AAF72618.1|AF252539_2 ribonucleotide reductase small subunit M2 [Leishmania amazonensis]
Length = 345
Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats.
Identities = 93/352 (26%), Positives = 160/352 (45%), Gaps = 28/352 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
A + P + N +++ + L P++Y W KY + W E+ +
Sbjct: 5 AAGAEVLPADKVAQGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDL 64
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
+D+ W + L D ER IK L FFA S+ +V N+ + PE R + Q
Sbjct: 65 GNDMKDWAT---LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQL 121
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E +HS T+ ++ + D E L + + +P I KA WA+++ +
Sbjct: 122 MMENIHSETYSVLLDTYITDSEEKLRLLHAIQTIPCIQKKAEWAVRWIGS---------- 171
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
F + L F V EG++F F + L + M G+ + I RDE LH +F
Sbjct: 172 ---SASFQERLIGFAAV-EGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFA 227
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ N H+ K +++ ++ +A +E + + +P +G+NA QY++F
Sbjct: 228 CLLY------NSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEF 281
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+A+R +G E ++ T+ PF +M E+I L+ + NFFE RV EYQ+ +
Sbjct: 282 VADRLLVSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKRVGEYQKAGVMS 331
>gi|4836362|gb|AAD30422.1|AF117061_1 ribonucleotide reductase R2 subunit [Aedes albopictus]
Length = 398
Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats.
Identities = 94/352 (26%), Positives = 160/352 (45%), Gaps = 28/352 (7%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+A N + + + + + +L + P++Y W+ Y A + W EV
Sbjct: 58 LAKNEMSAAHKREQTPFDPSIEPLLKENPRRFVIFPIQYHDIWQMYKKAEASFWTVEEVD 117
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ DLA W+ L E+ I L FFA+S+ +V N+V + + E R + Q
Sbjct: 118 LSKDLADWE---KLKSGEKHFISHVLAFFAASDGIVNVNLVERFSQEVQVTEARCFYGFQ 174
Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
E VHS + +I + D E LFN +P + KA+WAL + +
Sbjct: 175 IAMENVHSEMYSLLIDTYIRDSKEREYLFNAIDNLPCVKKKADWALNWISS--------- 225
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
Q + V + EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 226 ----KQANFGERVVAFAAVEGIFFSGTFASIFWLKKRGLMPGLTFSNELISRDEGLHTDF 281
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ + K Q++ ++ EA L+E + + +P +G+N QY++
Sbjct: 282 ACLMFKYLVQ-------KPSQERVIEIIREAVLIEQEFLTKALPVDLLGMNCELMSQYIE 334
Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
F A+R ++G++ ++ T+NPF +M E I L+ + NFFE +V EYQ+ +
Sbjct: 335 FEADRLLLELGIDKIYN-TKNPFSFM-EFISLEGKTNFFEKKVGEYQKWGVM 384
>gi|840719|emb|CAA54549.1| ribonucleotide reductase R2 [Arabidopsis thaliana]
Length = 340
Score = 258 bits (659), Expect = 8e-67, Method: Composition-based stats.
Identities = 98/334 (29%), Positives = 158/334 (47%), Gaps = 30/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +L A++ + P++Y WE Y A + W EV + D+ W+ LTD E+
Sbjct: 17 SEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWE---ALTDSEK 73
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I L FFA+S+ +V N+ + PE R + Q E +HS + ++ +
Sbjct: 74 HFISHILAFFAASDGIVLENLA-RFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFI 132
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I+ KA W L + Q+ F L +
Sbjct: 133 KDSKEKDRLFNAIETIPCISKKAKWCLDWIQS-------------PMSFAVRLVA-FACA 178
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F F I L + M G+ + I RDE LH +F +I+ +++ P
Sbjct: 179 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLISLLQLHVPL----- 233
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+K ++HEA +E + + +P +G+N+ QY+QF+A+R +G E +K
Sbjct: 234 --EKVYQIVHEAVEIETEFVCKALPCDLIGMNSNLMSQYIQFVADRLLVTLGCERTYK-A 290
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF WM E I L+ + NFFE RV EYQ+ + +
Sbjct: 291 ENPFDWM-EFISLQGKTNFFEKRVGEYQKASVMS 323
>gi|320585888|gb|EFW98567.1| ribonucleotide reductase small subunit [Grosmannia clavigera
kw1407]
Length = 378
Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats.
Identities = 102/344 (29%), Positives = 161/344 (46%), Gaps = 32/344 (9%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
NNT +S I+A E ++ +L + L P+KY W+ Y + W E+ +
Sbjct: 46 ENNTAVSAIKAAEA-----EEPLLKENAQRFVLFPIKYHEIWQMYKKHEASFWTAEEIDL 100
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
DL W N L DDER + L FFA+S+ +V N+V + PE R + Q
Sbjct: 101 SKDLHDWN--NRLNDDERFFVSHILAFFAASDGIVNENLVERFSAEVQVPEARCFYGFQI 158
Query: 122 FEEAVHSHTFQYIITSLGL---DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E VHS T+ +I + LFN +P I KA+WAL++
Sbjct: 159 MMENVHSETYSLLIDTYIKDTAQRTHLFNAIDTIPCIRKKADWALKWI------------ 206
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D + F Q L F V EG++F F+ I L + M G+ + I RDE LH +F
Sbjct: 207 SDRESTFAQRLVAFAAV-EGIFFSGAFSSIFWLKKRGLMPGLTFSNELISRDEGLHTDFA 265
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + +K + +Q ++ +A +E + E +P +G+N+ +QY++F
Sbjct: 266 CLLFSHLKN-------RPSKQLIEEIIVDAVKIEQEFLTEALPCALLGMNSTLMKQYIEF 318
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
+A+R +G + ++ + NPF +M E I L + NFFE RV E
Sbjct: 319 VADRLLVALGNDKVYN-STNPFDFM-ENISLGGKTNFFEKRVPE 360
>gi|37551487|gb|AAQ93139.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|38348909|gb|AAR17885.1| ribonucleotide reductase small subunit [Vaccinia virus]
gi|88900660|gb|ABD57572.1| VACV040 [Vaccinia virus]
gi|90819703|gb|ABD98513.1| VACV-DUKE-051 [Vaccinia virus]
Length = 319
Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats.
Identities = 87/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R ++ +A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRYIITDAVSIEQEFLTAALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|124010268|ref|ZP_01694921.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla
marina ATCC 23134]
gi|123983653|gb|EAY24093.1| ribonucleoside-diphosphate reductase, beta subunit [Microscilla
marina ATCC 23134]
Length = 330
Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats.
Identities = 93/336 (27%), Positives = 155/336 (46%), Gaps = 28/336 (8%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
N + +L + + L P++ W+ Y A + W E+ + DL W L DD
Sbjct: 3 NTVSEPLLESVDNRFVLFPIQQNDIWQMYKQAEASFWTAEEIDLAQDLKDWDE--KLNDD 60
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
ER I L FFA+S+ +V N+ + + +PE R + Q E +H+ T+ +I +
Sbjct: 61 ERHFITHVLAFFAASDGIVNENLAVNFLEEVKSPEARCFYGFQVAIENIHAETYSLLIDT 120
Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
D E LFN VP + KA WAL++ F + L F
Sbjct: 121 YIKDADEKHRLFNALETVPCVKKKAEWALRWID--------------KGSFAERLIAFAA 166
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
V EG++F F I L + M G++ + I RDE LH +F + N ++
Sbjct: 167 V-EGIFFSGSFCSIFWLKKRGLMPGLSFSNELISRDEGLHCDFACLLY------NSYIKN 219
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
K + +++ A +E + + +P +G+N+ +Y++F+A+R ++G E +
Sbjct: 220 KLPNETVVSIIKNAVEIEKEFVTDALPVKLIGMNSDLMSEYIEFVADRLLVELGCEKQYN 279
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
T NPF +M E+I L+ + NFFE RV+EY +
Sbjct: 280 -TANPFDFM-EMISLEGKTNFFEKRVSEYSKAGVAN 313
>gi|302682638|ref|XP_003031000.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8]
gi|300104692|gb|EFI96097.1| hypothetical protein SCHCODRAFT_57055 [Schizophyllum commune H4-8]
Length = 362
Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats.
Identities = 90/341 (26%), Positives = 153/341 (44%), Gaps = 27/341 (7%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
G+ ++ +L L P++Y W Y + W E+ + DL W+
Sbjct: 32 YVGDVDCPEHEEPLLKDSISRFVLFPIQYHEIWAMYKKEEASFWTAEEMDLSKDLHDWEE 91
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
+ + D+ER I L FFA+S+ +V N++ + PE R + Q E VHS T
Sbjct: 92 R--MNDNERHFISHVLAFFAASDGIVNENLLTRFCGEVKVPEARCFYGFQIMMENVHSET 149
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I + D + L N +P + KA WAL++ D F
Sbjct: 150 YSLLIDTYIRDPAQRTFLLNAVETIPCVRKKAEWALRWI------------ADRRSSFAI 197
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
L F V EG++F FA I L + M G+ + I RDE +H +F ++
Sbjct: 198 RLVAFSAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELITRDEGMHTDFACLLLTH--- 253
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
+ + + ++ EA +E + + +P +G+NA QY++F+A+R +
Sbjct: 254 ----MRRRPHPEVIEMIIKEAVAIEKEFLTDALPVSLIGMNADLMCQYIEFVADRLLVAL 309
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
G + ++ T NPF +M +I L+ + NFFE RV++Y+ A
Sbjct: 310 GNDKVWNAT-NPFDFMD-MISLQGKTNFFEKRVSDYKIAAV 348
>gi|71024571|ref|XP_762515.1| hypothetical protein UM06368.1 [Ustilago maydis 521]
gi|46101992|gb|EAK87225.1| hypothetical protein UM06368.1 [Ustilago maydis 521]
Length = 424
Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats.
Identities = 86/321 (26%), Positives = 147/321 (45%), Gaps = 27/321 (8%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
L P+++ W+ Y A + W E+ + DL W N L D+ER I L FFA
Sbjct: 103 RFVLFPIRFHEIWQMYKKAEASFWTAEEIDLSKDLHDWD--NKLNDNERHFISHVLAFFA 160
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
+S+ +V N+V + E R + Q E +HS T+ +I + + + LF+
Sbjct: 161 ASDGIVNENLVERFSSEVQAAEARCFYGFQIMMENIHSETYSLLIDTYIREPEQREYLFD 220
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+P + KA+WAL++ D F + L F V EG++F FA
Sbjct: 221 AVETIPVVKQKADWALRWI------------SDKRATFAERLVAFAAV-EGIFFSGSFAS 267
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
I L + M G+ + I RDE LH +F + + ++ + ++ E
Sbjct: 268 IFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHLRR-------RAHPDTVLKIITE 320
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
A +E A+ E++P +G+N+ QY++++A+R +G + + PF +M+ I
Sbjct: 321 AVEIEKAFLCESIPVALIGMNSKLMCQYIEYVADRLLVSLGNPVHYG-STCPFDFMT-NI 378
Query: 328 DLKKEKNFFETRVTEYQQGAE 348
L+ + NFFE +V EY +
Sbjct: 379 SLEGKTNFFEKKVAEYAKAGV 399
>gi|323098642|gb|ADX22879.1| ribonucleotide reductase small subunit [Monkeypox virus]
Length = 319
Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats.
Identities = 85/332 (25%), Positives = 146/332 (43%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FF +S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFXASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ + + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIHDSAGXG--------------ERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R ++ A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRFIITNAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|145537171|ref|XP_001454302.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422057|emb|CAK86905.1| unnamed protein product [Paramecium tetraurelia]
Length = 507
Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 94/351 (26%), Positives = 158/351 (45%), Gaps = 31/351 (8%)
Query: 5 TGLSPIQAGEKRVNVD--DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T LS +Q + V + D+ +L + L P+KY W Y + W E+ +
Sbjct: 170 TPLSNLQTSQPVVQQNECDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLY 229
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
DL W+ LT DE+ IK L FFA+S+ +V N+ + PE R + Q
Sbjct: 230 QDLKDWE---KLTADEKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIA 286
Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
E +HS T+ +I + DE E L + VP I KA WA+++ S
Sbjct: 287 MENIHSETYSLLIDTYITDENEKNYLLHAIDNVPVIQKKAMWAMKWINNNDS-------- 338
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ + + EG++F F I + + + M G+ + I RDE LH +F
Sbjct: 339 ------FAERLIAFAAVEGIFFSGSFCAIFWIKKRSLMPGLTFSNELISRDEGLHTDFAC 392
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+ + + E ++ A +E + E +P +G+N+ +QY++F+
Sbjct: 393 LLYKHMINKLSIQRVHE-------IISSAVEIEKEFISEALPVELIGMNSNLMKQYIEFV 445
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
A+R +G ++ ++NPF WM +I L+ + NFFE RV +YQ+ +
Sbjct: 446 ADRLIFALGAPKIYN-SKNPFEWMD-MISLQGKTNFFERRVGDYQKAGVMS 494
>gi|73974198|ref|XP_539109.2| PREDICTED: similar to ribonucleotide reductase M2 B (TP53
inducible) isoform 2 [Canis familiaris]
Length = 351
Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 99/339 (29%), Positives = 160/339 (47%), Gaps = 28/339 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E V D++ +L S + P++Y W+ Y A + W EV + DL W N
Sbjct: 24 ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS +
Sbjct: 81 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D + LFN +P + KA+WAL++ + + +
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIE-------------DRKSTFGERV 187
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 244
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G
Sbjct: 245 ----KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVELGFS 300
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+F ENPF +M E I L+ + NFFE RV EYQ+ A +
Sbjct: 301 KVF-QAENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 337
>gi|257053403|ref|YP_003131236.1| ribonucleotide-diphosphate reductase subunit beta [Halorhabdus
utahensis DSM 12940]
gi|256692166|gb|ACV12503.1| Ribonucleoside-diphosphate reductase [Halorhabdus utahensis DSM
12940]
Length = 330
Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 164/331 (49%), Positives = 229/331 (69%), Gaps = 4/331 (1%)
Query: 23 RMLN--ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+++ A D N++LP+ Y WA E Y + NN+W+P E+PMQDD+A W + LTD ER
Sbjct: 2 PIIDTAAEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVAQWN-GDELTDAERQ 60
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+++ NLGFF+++ESL ANN+VLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG
Sbjct: 61 LVEWNLGFFSTAESLTANNLVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGF 120
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ L+ MY VPSI K + + T+++ P FT ++ L+DL FYV+ EG++
Sbjct: 121 EPEYLYGMYDRVPSIEEKDQFVVDLTRSIDDPEFTIDGDSDVRDLLRDLVGFYVIMEGIF 180
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY GFA +L L R NKMVGI +Q++YIMRDESLH+ FG+D+I+QI+ ENP +WT EF +
Sbjct: 181 FYAGFAMMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRTENPGVWTDEFDSE 240
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
++ EA LE YA E P+ +G++ Y+++IA+RR Q+ L + TENPF
Sbjct: 241 VIDLIKEAVELEQIYAREACPEEILGMSGSQFADYVEYIADRRLDQLDLPEQYG-TENPF 299
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
PWMSE +DL KEKNFFET+VTEYQ G L+W
Sbjct: 300 PWMSEQVDLNKEKNFFETQVTEYQSGGSLEW 330
>gi|328700093|ref|XP_001944536.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Acyrthosiphon pisum]
Length = 361
Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 94/351 (26%), Positives = 156/351 (44%), Gaps = 28/351 (7%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
M N + A + + +L + P+ Y W Y + W EV
Sbjct: 18 MTNKNFFESVSAYRANFDATIEPLLKDNPRRFVIFPIIYDDIWAMYKKQEASFWNVEEVN 77
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
++ DL W LTDDER I L FFA+S+ +V N+V + + E R + Q
Sbjct: 78 LKSDLEDW---MKLTDDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQ 134
Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
E +HS + +I + D E LFN +P + KA+WAL++
Sbjct: 135 IMMENIHSEMYSLLIDTYIQDPKEKDFLFNAIETMPCVKKKADWALKWI----------- 183
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
D+ F + L F V EG++F FA + L + M G+ + I RDE LH +F
Sbjct: 184 -SDSKATFGERLVAFAAV-EGIFFSGSFAALFWLKKRGLMPGLTFSNELISRDEGLHTDF 241
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ ++ + P Q ++ EA +E + +P VG++ Y++
Sbjct: 242 ACLLFKHLEQKPP-------QAVITHIICEAVTIEQDFLTNALPVRMVGMSCEKMAVYIE 294
Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
F+A+R +++G ++ + NPFP+M +I + + NFFE RV +YQ+ +
Sbjct: 295 FVADRLLNELGCPTVY-RSSNPFPFMD-LISQQGKTNFFEKRVGDYQKASV 343
>gi|187607401|ref|NP_001119973.1| ribonucleotide reductase M2 B (TP53 inducible) [Xenopus (Silurana)
tropicalis]
gi|165971068|gb|AAI58191.1| LOC100144925 protein [Xenopus (Silurana) tropicalis]
Length = 346
Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 98/348 (28%), Positives = 157/348 (45%), Gaps = 31/348 (8%)
Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
TG + G +++ L + P+ Y W+ Y A + W EV + D
Sbjct: 13 TGDKNLTNGHSD---EEEPFLRKNPQRFVIFPIHYPDIWKMYKKAQASFWTAEEVDLSKD 69
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
L W+ L +ER I L FFA+S+ +V N+V + + PE R + Q E
Sbjct: 70 LVHWE---KLKPEERNFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIE 126
Query: 125 AVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
VHS + +I + D LFN +P + KA WAL++ D
Sbjct: 127 NVHSEMYSLLIETYIKDPRRREFLFNAIETMPCVRKKAQWALRWI------------SDR 174
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
F + + F V EG++F FA I L + M G+ + I RDE LH +F +
Sbjct: 175 KASFGERVVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLM 233
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
+ + K +++ ++ A +E + E +P +G+N + Y++F+A+
Sbjct: 234 FHYLVK-------KPTEERVTEIIVNAVRIEQEFLTEALPVSLIGMNCTLMKTYIEFVAD 286
Query: 302 RRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
R ++G FK ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 287 RLLVELGCSKAFK-AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 332
>gi|15791173|ref|NP_280997.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium
sp. NRC-1]
gi|169236929|ref|YP_001690129.1| ribonucleotide-diphosphate reductase subunit beta [Halobacterium
salinarum R1]
gi|10581791|gb|AAG20477.1| ribonucleoside reductase small chain [Halobacterium sp. NRC-1]
gi|167727995|emb|CAP14783.1| ribonucleoside-diphosphate reductase beta subunit [Halobacterium
salinarum R1]
Length = 331
Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 159/327 (48%), Positives = 228/327 (69%), Gaps = 2/327 (0%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+A D N++LP+ Y WA E Y N+W P EV MQ D++ W+ N LTD ER +++ N
Sbjct: 7 DAEHDPNKILPIDYDWAREYYQQGVANNWTPEEVAMQGDISQWQ-GNELTDAERQLVEWN 65
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
LGFF+++ESL ANNIVLAIY +++ PECRQYLLRQA+EEAVH+ TF Y SLG D +
Sbjct: 66 LGFFSTAESLTANNIVLAIYEYVTAPECRQYLLRQAYEEAVHTDTFIYCCDSLGFDPEHM 125
Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
+ MY +PSI K + + T+ + +FT T D ++FL+DL FYV+ EG++FY GF
Sbjct: 126 YGMYDRIPSIAEKDEFVVGLTRAVDDQAFTIDTDDDLRDFLRDLVGFYVIMEGIFFYAGF 185
Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
A +L+L R KMVG+ EQ++YIMRDESLHLNFG+D+INQI+ E+P +WT +F+ + +++
Sbjct: 186 AMMLALKRRGKMVGVGEQFEYIMRDESLHLNFGVDLINQIRDEHPDVWTADFEAEVNSLM 245
Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
+A LE YA + P +G+++ Y++++A+RR Q+ ++P++ T+NPFPWM+E
Sbjct: 246 RDAVDLEQLYARDACPDDLLGMSSEQFADYVEYVADRRFQQLRMDPVYG-TDNPFPWMTE 304
Query: 326 VIDLKKEKNFFETRVTEYQQGAELKWD 352
+DL E NFFE V+EYQQG L WD
Sbjct: 305 QVDLNTETNFFERNVSEYQQGGSLDWD 331
>gi|290771185|emb|CAY80753.2| Rnr2p [Saccharomyces cerevisiae EC1118]
Length = 399
Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 27/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER
Sbjct: 74 KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WAL++ Q DAD F + L +
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + +K +
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 293
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ EA +E Y + +P +G+NA QY++F+A+R G + +K
Sbjct: 294 --AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV- 350
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L + NFFE RV++YQ+ +
Sbjct: 351 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383
>gi|241589542|ref|YP_002979567.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
gi|240868254|gb|ACS65913.1| Ribonucleoside-diphosphate reductase [Ralstonia pickettii 12D]
Length = 328
Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 179/311 (57%), Positives = 228/311 (73%), Gaps = 5/311 (1%)
Query: 1 MANNTGLSPI-----QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55
M ++ + A KRVNV +KR++N +DVNQL+P KY WAWEKYL+ C NHWM
Sbjct: 1 MDMSSSYDEVAHAHASATAKRVNVAEKRIINGATDVNQLVPFKYKWAWEKYLAGCANHWM 60
Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
P EV M D+ALWK NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ
Sbjct: 61 PQEVNMARDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQ 120
Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT 175
YLLRQAFEEA+H+H +QYI+ SLGL+E E+FN Y EV SI K + + + TL+ PSF
Sbjct: 121 YLLRQAFEEAIHTHAYQYIVESLGLNEAEIFNAYHEVQSIRDKDEFLIPFIDTLTDPSFK 180
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
TGT + D++ L+ L VF + EG++FY GF QIL++GR NKM G AEQYQYI+RDESLH
Sbjct: 181 TGTPENDRKLLKSLIVFACIMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESLHC 240
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
NFGID+INQIK+ENPHLWT EF+ + + +A LE YA +TMP+G +GLNA + Y
Sbjct: 241 NFGIDLINQIKLENPHLWTAEFKVEITELFKQAVDLEYRYAEDTMPRGVLGLNASMFKGY 300
Query: 296 MQFIANRRCHQ 306
++FI NRRC
Sbjct: 301 LRFICNRRCRS 311
>gi|326403282|ref|YP_004283363.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium
multivorum AIU301]
gi|325050143|dbj|BAJ80481.1| ribonucleoside-diphosphate reductase beta subunit [Acidiphilium
multivorum AIU301]
Length = 338
Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 92/331 (27%), Positives = 158/331 (47%), Gaps = 20/331 (6%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L P +Y WA+E +L+ HW+P EVP+ DD+ W LT ER ++
Sbjct: 22 LLTENP---VYKPFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWH--RNLTPGERNLLT 76
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
+ FF ++ V N + + E L + E +H + +++ ++G+ E
Sbjct: 77 QIFRFFTQADVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEV 136
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ + + + K ++ ++ + D+ E + L F EG+ +
Sbjct: 137 E-YSAFLKYKEMKDKYDYMQEF------------SVDSKHEIAKTLAAFGAFTEGLQLFA 183
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
FA +L+ R NKM G+ + + +RDESLH N I + ENP +WT+E +++
Sbjct: 184 SFAILLNFPRFNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIWTEELRREIYL 243
Query: 264 MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
E A+ G GL A ++Y+++IA+RR Q+GL PLF +NP PW
Sbjct: 244 CCATIVDHEDAFIDLAFEFGAVEGLTAEEVKRYIRYIADRRLLQLGLNPLFHVDKNPLPW 303
Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
+ E+++ + NFFE R TEY + + WD
Sbjct: 304 LDEMLNAVEHTNFFENRATEYSKASTAGSWD 334
>gi|299747484|ref|XP_001837064.2| ribonucleotide reductase small subunit [Coprinopsis cinerea
okayama7#130]
gi|298407540|gb|EAU84681.2| ribonucleotide reductase small subunit [Coprinopsis cinerea
okayama7#130]
Length = 379
Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 92/341 (26%), Positives = 153/341 (44%), Gaps = 28/341 (8%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
GE + ++ +L L P++Y W Y A + W E+ + D+ W
Sbjct: 44 FVGEVDLPESEEPLLKPSPKRLTLYPIQYPEIWTHYKRAQASFWTAEEIDLSHDMMDW-- 101
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
+ LT+ ER + R L FFASS+ +V N+V + PE R + Q E VHS T
Sbjct: 102 -SKLTNAERHFLSRILAFFASSDGIVNENLVERFSSEVQVPEARCFYGFQVMIENVHSET 160
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I + D E LF +PSI KA WAL + T D F +
Sbjct: 161 YSLLIDTYIKDPEERDFLFRAIETIPSIQRKAEWALTW------------TSDKSTTFAE 208
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
L + V EG++F FA I + + + G+ + I RDE +H +F + ++
Sbjct: 209 RLVA-FAVVEGVFFSGSFAAIFWMRKRGLLPGLTFSNELISRDEGMHTDFACLLFAYLRK 267
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
++ EA +E + + +P +G+N+ QY++F+A+R +
Sbjct: 268 RPHS-------DTILAIVTEAVEIEKEFFSDALPVSLIGMNSSLMNQYIEFVADRLLTSL 320
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
G + + NPF +M E+I ++ + NFFE RV++Y +
Sbjct: 321 GNDKHYHVD-NPFDFM-ELISMEGKANFFEKRVSDYAKANV 359
>gi|148259750|ref|YP_001233877.1| ribonucleotide-diphosphate reductase subunit beta [Acidiphilium
cryptum JF-5]
gi|146401431|gb|ABQ29958.1| Ribonucleoside-diphosphate reductase [Acidiphilium cryptum JF-5]
Length = 338
Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats.
Identities = 92/331 (27%), Positives = 158/331 (47%), Gaps = 20/331 (6%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L P +Y WA+E +L+ HW+P EVP+ DD+ W LT ER ++
Sbjct: 22 LLTENP---VYKPFRYPWAYEAWLTQQRVHWLPEEVPLADDVKDWH--RNLTPGERNLLT 76
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
+ FF ++ V N + + E L + E +H + +++ ++G+ E
Sbjct: 77 QIFRFFTQADVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPEV 136
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ + + + K ++ ++ + D+ E + L F EG+ +
Sbjct: 137 E-YSAFLKYKEMKDKYDYMQEF------------SVDSKHEIAKTLAAFGAFTEGLQLFA 183
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
FA +L+ R NKM G+ + + +RDESLH N I + ENP +WT+E +++
Sbjct: 184 SFAILLNFPRFNKMKGMGQIVSWSVRDESLHCNSVIKLFRTFVAENPEIWTEELRREIYL 243
Query: 264 MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
E A+ G GL A ++Y+++IA+RR Q+GL PLF +NP PW
Sbjct: 244 CCATIVDHEDAFIDLAFEFGAVEGLTAEEVKRYIRYIADRRLLQLGLNPLFHVDKNPLPW 303
Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
+ E+++ + NFFE R TEY + + WD
Sbjct: 304 LDEMLNAVEHTNFFENRATEYSKASTAGSWD 334
>gi|323098445|gb|ADX22683.1| ribonucleotide reductase small subunit [Monkeypox virus]
Length = 319
Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats.
Identities = 86/332 (25%), Positives = 146/332 (43%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FF +S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFXASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R ++ A +E + +P +G+N + Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRFIITNAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|296227440|ref|XP_002759377.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
isoform 1 [Callithrix jacchus]
Length = 351
Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats.
Identities = 98/350 (28%), Positives = 162/350 (46%), Gaps = 28/350 (8%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
+ S E + +++ +L S + P++Y W+ Y A + W EV +
Sbjct: 13 DQDERSSADTNENEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLS 72
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
DL W N L DE+ I L FFA+S+ +V N+V + + PE R + Q
Sbjct: 73 KDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQIL 129
Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
E VHS + +I + D + LFN +P + KA+WAL++
Sbjct: 130 IENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------------ 177
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ + V + EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 178 -DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 236
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+ + K +++ R ++ +A +E + E +P G +G+N +QY++F+
Sbjct: 237 LMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFV 289
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
A+R ++G F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 290 ADRLLVELGFSKFF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337
>gi|323347997|gb|EGA82256.1| Rnr2p [Saccharomyces cerevisiae Lalvin QA23]
Length = 399
Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats.
Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 27/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER
Sbjct: 74 KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WAL++ Q DAD F + L +
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + +K +
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 293
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ EA +E Y + +P +G+NA QY++F+A+R G + +K
Sbjct: 294 --AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV- 350
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L + NFFE RV++YQ+ +
Sbjct: 351 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383
>gi|6322434|ref|NP_012508.1| Rnr2p [Saccharomyces cerevisiae S288c]
gi|1172946|sp|P09938|RIR2_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 1;
AltName: Full=Ribonucleotide reductase R2 subunit 1;
AltName: Full=Ribonucleotide reductase small subunit 1
gi|52695523|pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
gi|52695524|pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
gi|52695525|pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
gi|52695526|pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
gi|172450|gb|AAA34988.1| ribonucleoside diphosphate reductase small subunit [Saccharomyces
cerevisiae]
gi|1008142|emb|CAA89317.1| RNR2 [Saccharomyces cerevisiae]
gi|285812874|tpg|DAA08772.1| TPA: Rnr2p [Saccharomyces cerevisiae S288c]
Length = 399
Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats.
Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 27/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER
Sbjct: 74 KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WAL++ Q DAD F + L +
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + +K +
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 293
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ EA +E Y + +P +G+NA QY++F+A+R G + +K
Sbjct: 294 --AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV- 350
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L + NFFE RV++YQ+ +
Sbjct: 351 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383
>gi|209966751|ref|YP_002299666.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum
centenum SW]
gi|209960217|gb|ACJ00854.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodospirillum
centenum SW]
Length = 322
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 91/332 (27%), Positives = 159/332 (47%), Gaps = 20/332 (6%)
Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
+L P +Y WA+E +L+ HW+P EVP+ DD+ W+ LT+ ER ++
Sbjct: 4 PLLTPNP---VYKPFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWRQ--KLTEAERNLL 58
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
+ FF ++ V N + R E L + E VH + +++ ++G+ E
Sbjct: 59 TQIFRFFTQADVEVNNCYMRHYSRVFQPTEVCMMLAAFSAMETVHIAAYSHLLDTIGMPE 118
Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
E ++ + + K ++ + D+ ++ + L VF EG+ +
Sbjct: 119 IE-YSAFLRYKEMKDKYDYMQGF------------NVDSLEDIAKTLAVFGAFTEGLQLF 165
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
FA +++ R NKM G+ + + +RDE+LH I + ENP +WT+ FQ++
Sbjct: 166 ASFAILMNFPRFNKMKGMGQIVTWSVRDETLHTLSMIKLFRTFVNENPQVWTEAFQRELT 225
Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
E A+ G G+ A ++Y+++IA+RR Q+GLEP+++ +NP P
Sbjct: 226 VCCETIVHHEDAFIDLAFEMGPVEGMTAEDVKRYIRWIADRRLGQLGLEPVYRIEKNPLP 285
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE-LKWD 352
WM +++ + NFFE R TEY + A WD
Sbjct: 286 WMDAILNGIEHTNFFENRATEYSKAATRGTWD 317
>gi|321263951|ref|XP_003196693.1| ribonucleotide reductase small subunit [Cryptococcus gattii WM276]
gi|317463170|gb|ADV24906.1| Ribonucleotide reductase small subunit, putative [Cryptococcus
gattii WM276]
Length = 430
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 98/328 (29%), Positives = 153/328 (46%), Gaps = 28/328 (8%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L L P+KY W+ Y A + W E+ DL W + +T+ ER I
Sbjct: 102 ILRESDSRFVLFPIKYNEIWQAYKRAQASFWTAEELDFGHDLIDWH--DRMTEQERFFIL 159
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
R L FFA+S+ +V NIV + E R + Q+ E VHS T+ +I + D
Sbjct: 160 RILAFFAASDGIVGENIVSQFSLEVQIAEARAFYSFQSMIEQVHSETYSLLIETYVRDAQ 219
Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
E LF +P I KA+WAL+Y D+ + V + EG++
Sbjct: 220 EKDFLFRGMENIPCIKQKADWALKYI--------------TDELPFRTRLVAFACVEGIF 265
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
F FA I L + M G+ + I RDE +H +F + N +K + +
Sbjct: 266 FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLLYNHLK-------HRCSTDE 318
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
++ EA ++E + + +P +G+NA QYM+F+A+R +G ++ T NPF
Sbjct: 319 VHRIVSEALVIEKQFLTDALPCALIGINAHLMCQYMEFVADRLVVDLGYPKIYNAT-NPF 377
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
WM E+I L+ + NFFE+RV+ YQ+
Sbjct: 378 DWM-ELISLQGKANFFESRVSAYQKANV 404
>gi|1710398|sp|P50650|RIR2_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase R2 subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|555613|gb|AAA50170.1| ribonucleotide reductase small subunit [Plasmodium falciparum]
Length = 349
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 97/361 (26%), Positives = 173/361 (47%), Gaps = 38/361 (10%)
Query: 1 MANNTGLS--PIQAGEKRV-------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACN 51
MA+ +S PI + ++R ++++LN SD L P+ Y W+ Y A
Sbjct: 1 MADVINISRIPIFSKQEREFSDLQKGKEINEKILNKESDRFTLYPILYPDVWDFYKKAEA 60
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
+ W E+ + DL ++ L ++E+ IK L FFA+S+ +V N+ R +
Sbjct: 61 SFWTAEEIDLSSDLKDFE---KLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQIT 117
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168
E +++ Q E +HS T+ +I + DE E LF+ +P++ KA WA ++
Sbjct: 118 EAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWIND 177
Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
+S + V EG+ F F I + NK+ G+ + I
Sbjct: 178 TNS--------------FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELIS 223
Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
RDE LH +F + + + + P +Q + ++ EA +E ++ E++P +G+N
Sbjct: 224 RDEGLHTDFNCLIYSLLDNKLP-------EQIIQNIVKEAVEVERSFICESLPCDLIGMN 276
Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+ QY++F+A+R +G +F +++NPF WM +I L+ + NFFE RV +YQ+
Sbjct: 277 SRLMSQYIEFVADRLLECLGCSKIF-HSKNPFNWMD-LISLQGKTNFFEKRVADYQKSGV 334
Query: 349 L 349
+
Sbjct: 335 M 335
>gi|151945057|gb|EDN63308.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae YJM789]
gi|190409471|gb|EDV12736.1| ribonucleotide reductase subunit [Saccharomyces cerevisiae RM11-1a]
gi|256271075|gb|EEU06176.1| Rnr2p [Saccharomyces cerevisiae JAY291]
Length = 399
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 27/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER
Sbjct: 74 KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WAL++ Q DAD F + L +
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + +K +
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 293
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ EA +E Y + +P +G+NA QY++F+A+R G + +K
Sbjct: 294 --AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV- 350
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L + NFFE RV++YQ+ +
Sbjct: 351 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383
>gi|308809930|ref|XP_003082274.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
tauri]
gi|116060742|emb|CAL57220.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
tauri]
Length = 382
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 90/331 (27%), Positives = 148/331 (44%), Gaps = 29/331 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D L P+K+ WE Y A + W EV + D W++ L ++E+
Sbjct: 63 EPLLRDNPDRFCLFPIKHPRVWEMYKKAEASFWTAEEVDLTYDYKDWQT---LNENEKHF 119
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
+ L FFASS+ +V N+ + PE R + Q E +HS + ++ + D
Sbjct: 120 VSHVLAFFASSDGIVLENLCSRFMSDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKD 179
Query: 142 EG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
ELF VP++ KA+WAL + + D F + L + EG
Sbjct: 180 PKKKSELFRAIHTVPTVAMKADWALHWIGS-------------DASFPERLVG-FACVEG 225
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE LH +F + ++ +
Sbjct: 226 IFFSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYGMLQN-------PLSE 278
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ +A +E + + + VG+NA Y++F+A+R Q+G LF N
Sbjct: 279 ATLHHIVGDAVKIEKEFVCDALSCSLVGMNADMMSTYIEFVADRLLIQLGASKLFNAV-N 337
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
PF WM E+I L+ + NFFE RV +YQ+ +
Sbjct: 338 PFDWM-ELISLQGKANFFEHRVDQYQKAGVM 367
>gi|207343947|gb|EDZ71248.1| YJL026Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 399
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 101/334 (30%), Positives = 158/334 (47%), Gaps = 27/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER
Sbjct: 74 KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+S+V N+V + PE + + Q E +HS T+ +I +
Sbjct: 132 FFISRVLAFFAASDSIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WAL++ Q DAD F + L +
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + +K +
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 293
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ EA +E Y + +P +G+NA QY++F+A+R G + +K
Sbjct: 294 --AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV- 350
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L + NFFE RV++YQ+ +
Sbjct: 351 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383
>gi|194036959|ref|XP_001925036.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Sus
scrofa]
Length = 351
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 97/339 (28%), Positives = 157/339 (46%), Gaps = 28/339 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E ++ +L S + P++Y W+ Y A + W EV + DL W N
Sbjct: 24 ENEAKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NR 80
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS +
Sbjct: 81 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D + LFN +P + KA+WAL++ + +
Sbjct: 141 LIDTYIRDPKQREFLFNAIETMPYVKKKADWALRWIA-------------DRKATFGERV 187
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 244
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
K + + R ++ A +E + E +P G +G+N +QY++F+A+R ++G
Sbjct: 245 ----KPSEARVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTELGFS 300
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 301 KVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337
>gi|149721713|ref|XP_001493623.1| PREDICTED: ribonucleotide reductase M2 B (TP53 inducible) [Equus
caballus]
Length = 351
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 98/339 (28%), Positives = 159/339 (46%), Gaps = 28/339 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E +++ +L S + P++Y W+ Y A + W EV + DL W N
Sbjct: 24 ENEAKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS +
Sbjct: 81 LTSDEKYFISHVLAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D + LFN +P + KA+WALQ+ + +
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALQWIA-------------DRKSTFGERV 187
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 244
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++G
Sbjct: 245 ----KPSEERVREIIVNAVEIEQEFLTEALPVDLIGMNCVLMKQYIEFVADRLLVELGFS 300
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 301 KVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337
>gi|225012154|ref|ZP_03702591.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
MS024-2A]
gi|225003709|gb|EEG41682.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
MS024-2A]
Length = 325
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 92/332 (27%), Positives = 154/332 (46%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P+K+ WE Y + W E+ + DL W + LT+DE+
Sbjct: 5 EPILQENENRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDLTDWNT--KLTEDEKYF 62
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LF P+I KA+WAL++ + S + + + EG
Sbjct: 123 DVEKDRLFKAIEVFPAIKKKADWALRWIDSDS---------------FAERLIAFAAVEG 167
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE +H +F + + N K
Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHLHNHHL------VNKVPP 221
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ + +L +A +E + E++P +G+NA QY++F+ +R ++GLE F T N
Sbjct: 222 ARIKEILLDALTIEREFITESLPISLIGMNAKLMTQYLEFVTDRLLQELGLEKEFNVT-N 280
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M +I L+ + NFFE RV EYQ+ L
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGEYQKAGVLN 311
>gi|124808087|ref|XP_001348226.1| ribonucleotide reductase small subunit [Plasmodium falciparum 3D7]
gi|23497116|gb|AAN36665.1|AE014816_50 ribonucleotide reductase small subunit [Plasmodium falciparum 3D7]
Length = 349
Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats.
Identities = 97/361 (26%), Positives = 173/361 (47%), Gaps = 38/361 (10%)
Query: 1 MANNTGLS--PIQAGEKRV-------NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACN 51
MA+ +S PI + ++R ++++LN SD L P+ Y W+ Y A
Sbjct: 1 MADVINISRIPIFSKQEREFSDLQKGKEINEKILNKESDRFTLYPILYPDVWDFYKKAEA 60
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
+ W E+ + DL ++ L ++E+ IK L FFA+S+ +V N+ R +
Sbjct: 61 SFWTAEEIDLSSDLKDFE---KLNENEKHFIKHVLAFFAASDGIVLENLASKFLREVQIT 117
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168
E +++ Q E +HS T+ +I + DE E LF+ +P++ KA WA ++
Sbjct: 118 EAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAVKNKALWAAKWIND 177
Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
+S + V EG+ F F I + NK+ G+ + I
Sbjct: 178 TNS--------------FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELIS 223
Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
RDE LH +F + + + + P +Q + ++ EA +E ++ E++P +G+N
Sbjct: 224 RDEGLHTDFNCLIYSLLDNKLP-------EQMVQNIVKEAVEVERSFICESLPCDLIGMN 276
Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+ QY++F+A+R +G +F +++NPF WM +I L+ + NFFE RV +YQ+
Sbjct: 277 SRLMSQYIEFVADRLLECLGCSKIF-HSKNPFNWMD-LISLQGKTNFFEKRVADYQKSGV 334
Query: 349 L 349
+
Sbjct: 335 M 335
>gi|313117005|ref|YP_004038129.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense
DSM 11551]
gi|312294957|gb|ADQ68993.1| ribonucleotide reductase, beta subunit [Halogeometricum borinquense
DSM 11551]
Length = 330
Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats.
Identities = 162/330 (49%), Positives = 226/330 (68%), Gaps = 4/330 (1%)
Query: 24 MLNARS--DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+LN + D N++LP+ Y WA + Y N+W+P E+PMQ+D+A W + L+D E+ +
Sbjct: 3 ILNNDTEHDPNKILPIDYDWARQYYRDGVANNWVPEEIPMQEDIAQWN-GDALSDSEKQL 61
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
++ NLGFF+++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG D
Sbjct: 62 VEWNLGFFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFD 121
Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
++ MY VPSI K + + T+ L P FT ++ L+DL FYVV EG++F
Sbjct: 122 PEYMYGMYDRVPSIKEKDEFVVDLTRNLDDPDFTVEDTADVRDLLRDLVGFYVVMEGVFF 181
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
Y GFA +L+L R NKMVGI +Q++YIMRDESLH+ FG+D+INQI+ ENP WT EF +
Sbjct: 182 YAGFAMMLALKRQNKMVGIGQQFEYIMRDESLHVGFGVDLINQIRAENPDAWTDEFGAEV 241
Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
R ++ +A LE YA E P +G++ +Y++ +A+RR Q+ L+ + T+NPFP
Sbjct: 242 RDLIEKAVDLEQIYAREACPDDVLGMSPDQFAEYVEHVADRRLGQLDLDASYG-TDNPFP 300
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
WMSE +DL KEKNFFET+VTEYQ G L W
Sbjct: 301 WMSEAVDLNKEKNFFETQVTEYQSGGSLDW 330
>gi|323308423|gb|EGA61668.1| Rnr2p [Saccharomyces cerevisiae FostersO]
Length = 399
Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats.
Identities = 100/334 (29%), Positives = 157/334 (47%), Gaps = 27/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER
Sbjct: 74 KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WAL++ Q DAD F + L +
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + +K +
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP----- 293
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ EA +E Y + +P +G+NA QY++F+A+R G + +K
Sbjct: 294 --AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKV- 350
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L + NFFE RV++YQ+ +
Sbjct: 351 ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383
>gi|328872436|gb|EGG20803.1| ribonucleotide reductase small subunit [Dictyostelium fasciculatum]
Length = 335
Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats.
Identities = 88/331 (26%), Positives = 155/331 (46%), Gaps = 28/331 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D L P+KY W Y A + W E+ + D+ W+ N L D+ER
Sbjct: 6 EEPLLKENKDRFVLFPIKYTDIWNMYKKAEASFWTAEEIDLASDVNEWE--NKLNDNERH 63
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I +
Sbjct: 64 FIKNVLAFFAASDGIVNENLATKFMSEVQIPEARCFYGFQIAIENIHSETYSLLIDTYIK 123
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
+ E LFN +P + KA+WAL++ + + + V + E
Sbjct: 124 NPDEKKVLFNAIETIPCVKKKADWALRWI--------------TNSKSFAERLVAFAAVE 169
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + N++ +
Sbjct: 170 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYNKLNNKLDV------ 223
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ +++ +A E + +++P +G+N+ +Y++F A+R +G + ++ +
Sbjct: 224 -KTIESIIRDAVECEKEFVTDSLPVDLIGMNSREMSKYIEFCADRLLVSLGYKKIYN-SA 281
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
NPF WM E+I L ++ NFFE +V+EY +
Sbjct: 282 NPFDWM-EMISLMRKANFFEGKVSEYAKAGV 311
>gi|126322530|ref|XP_001380256.1| PREDICTED: hypothetical protein [Monodelphis domestica]
Length = 361
Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats.
Identities = 93/339 (27%), Positives = 162/339 (47%), Gaps = 28/339 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+ + ++ +L S + P++Y W+ Y A + W EV + DL W N
Sbjct: 34 DNGLKSSEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 90
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L DE+ I L FFA+S+ +V N+V + + PE R + Q E +HS +
Sbjct: 91 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENIHSEMYSL 150
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D + LFN +P + KA+WALQ+ + +
Sbjct: 151 LIDTYIKDPQKREFLFNAIETMPCVKRKADWALQWIA-------------DRKSTFGERV 197
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 198 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFHYLVN--- 254
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
K +++ + ++ A +E + + +P G +G+N+ +QY++F+A+R ++G
Sbjct: 255 ----KPSEERVKEIIINAVEIEQEFLTDALPVGLIGINSTLMKQYIEFVADRLLVELGFS 310
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+F ++NPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 311 KVF-QSDNPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 347
>gi|194673004|ref|XP_607398.4| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 1 [Bos
taurus]
gi|297482473|ref|XP_002692807.1| PREDICTED: ribonucleotide reductase M2 polypeptide-like [Bos
taurus]
gi|296480530|gb|DAA22645.1| ribonucleotide reductase M2 polypeptide-like [Bos taurus]
Length = 351
Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats.
Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 28/339 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E D++ +L S + P++Y W+ Y A + W EV + DL W N
Sbjct: 24 ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKKAQASFWTAEEVDLSKDLPHW---NK 80
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L +E+ I L FFA+S+ +V N+V + + PE R + Q E VHS +
Sbjct: 81 LKSEEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D + LFN +P + KA+WAL++ + +
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA-------------DRKSTFGERV 187
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 244
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G
Sbjct: 245 ----KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLTELGFS 300
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 301 KVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 337
>gi|6969682|gb|AAF33894.1| TF4L [Vaccinia virus Tian Tan]
Length = 319
Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats.
Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE L +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLRCDFACLMFKHLL-------HPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R+++ +A +E + +P +G+N E Y++F+A+R ++G + ++ T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTAALPVKLIGMNCEMMETYIEFVADRLISELGFKKIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQQ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQQMGVMS 307
>gi|289742419|gb|ADD19957.1| ribonucleotide reductase beta subunit [Glossina morsitans
morsitans]
Length = 396
Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats.
Identities = 89/354 (25%), Positives = 157/354 (44%), Gaps = 28/354 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ T + + + + +L + P++Y W+ Y A + W EV +
Sbjct: 57 KDATVTTASDNSVAKFDPSIEPLLKENPKRFVIFPIQYPEIWKMYKKAEASFWTAEEVDL 116
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
D+ W N L+D ER I L FFA+S+ +V N+V + + E R + Q
Sbjct: 117 SKDMDDW---NRLSDGERHFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQI 173
Query: 122 FEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
E VHS + +I + +DE E LFN +P + KA WAL + +
Sbjct: 174 AMENVHSEMYSLLIETYIMDEKEREYLFNAIETMPLVKKKAEWALAWISS---------- 223
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
+ + + EG++F FA I L + M G+ + I RDE LH F
Sbjct: 224 ---HSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNEMISRDEGLHCEFA 280
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + + K +++ ++ +A +E + E +P +G+N+ S +Y+++
Sbjct: 281 VLMFKHLIQ-------KPSKERILEIITDAVKIEKEFLTEALPVDLIGMNSESMCKYIEY 333
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+A+R ++ + + ENPF +M++ I + + NFFE RV EYQ+ D
Sbjct: 334 VADRLLLELDVGKYY-LAENPFEFMNK-ISIDGKTNFFEKRVGEYQKIGVSSDD 385
>gi|6525234|gb|AAF15363.1|AF205376_1 ribonucleotide reductase R2 subunit [Plasmodium falciparum]
Length = 320
Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats.
Identities = 92/331 (27%), Positives = 161/331 (48%), Gaps = 29/331 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+R+LN SD L P+ Y W+ Y A + W E+ + DL ++ L ++E+
Sbjct: 2 RRILNKESDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE---KLNENEKHF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +I + D
Sbjct: 59 IKHVLAFFAASDGIVLENLASKFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E LF+ +P++ KA WA ++ +S + V EG
Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWINDTNS--------------FAERIVANACVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
+ F F I + NK+ G+ + I RDE LH +F + + + + P +
Sbjct: 165 ILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLP-------E 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
Q + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G +F +++N
Sbjct: 218 QMVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HSKN 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
PF WM +I L+ + NFFE RV +YQ+ +
Sbjct: 277 PFNWMD-LISLQGKTNFFEKRVADYQKSGVM 306
>gi|9633651|ref|NP_051729.1| ribonucleotide reductase, small subunit [Myxoma virus]
gi|6523870|gb|AAF14903.1|AF170726_19 ribonucleotide reductase, small subunit [Myxoma virus]
gi|301134541|gb|ADK63655.1| M015L [Myxoma virus]
Length = 322
Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats.
Identities = 94/334 (28%), Positives = 158/334 (47%), Gaps = 28/334 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
++D+ +L D + P++Y W Y A + W P EV + DL W+ LT DE
Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWRV---LTPDE 57
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
+ IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I +
Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
+D E LF + I KA W ++ ++ D + + L +
Sbjct: 118 IIDLQEKEKLFKAIETMDCIKQKAEWVQKWI------------RNKDATYAERLIA-FAS 164
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + KM G+ + I RDE LH +F + +K
Sbjct: 165 VEGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFKHLK-------HT 217
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+++ +++ EA ++E + E +P +G+N QY++F+A+R ++G +F
Sbjct: 218 PSEERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSA 277
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
T NPF +M E I L+ + NFFE RV++YQ+ +
Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQRMGVV 309
>gi|281340156|gb|EFB15740.1| hypothetical protein PANDA_011632 [Ailuropoda melanoleuca]
Length = 336
Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats.
Identities = 98/339 (28%), Positives = 159/339 (46%), Gaps = 28/339 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E D++ +L S + P++Y W+ Y A + W EV + DL W N
Sbjct: 9 ENEAKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 65
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS +
Sbjct: 66 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 125
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D + LFN +P + KA+WAL++ + + +
Sbjct: 126 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIE-------------DRKSTFGERV 172
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 173 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 229
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
K +++ R ++ A +E + E +P G +G+N +QY++F+A+R ++G
Sbjct: 230 ----KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVADRLLVELGFS 285
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+F ENPF +M E I L+ + NFFE RV EYQ+ A +
Sbjct: 286 KVF-QAENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 322
>gi|219110949|ref|XP_002177226.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411761|gb|EEC51689.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 409
Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats.
Identities = 93/323 (28%), Positives = 151/323 (46%), Gaps = 28/323 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
L P+++ W Y + W E+ + DL W + L D+ER I L FF
Sbjct: 92 SRFSLFPIEHDDLWGMYKQHVASFWTVDEIDLSADLTDWHER--LNDNERHFISMVLAFF 149
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELF 146
A ++ +V N+ R ++ PE R + Q E +H T+ +I S D LF
Sbjct: 150 AGADGIVVENLAERFCREVTVPEARAFYGFQMAMEGIHQETYCLLIDSYISDPKDREMLF 209
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
+ +VPS+ KA WA +Y + D F + L F V EG++F F
Sbjct: 210 AAHTKVPSVEKKARWAQRYIGS-------------DASFAERLVAFAAV-EGIFFSGAFC 255
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
I L + M G+ + I RDE LH +F + ++++ + + ++
Sbjct: 256 SIFWLKKRGLMPGLTFSNELISRDEGLHCSFACQLYSKLERKLS-------ETDMHKLIG 308
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
EA +E + + +P G +G+NA QY++F+A+R H +G L+ ++NPF WM +
Sbjct: 309 EAVEVEKGFVCDALPVGLIGMNASLMSQYVEFVADRLLHDLGYRTLYG-SKNPFDWMD-M 366
Query: 327 IDLKKEKNFFETRVTEYQQGAEL 349
I L+ + NFFE RV EYQ+ +
Sbjct: 367 ISLEGKTNFFEKRVGEYQKSGVM 389
>gi|170664480|gb|ACB28637.1| small subunit ribonucleotide reductase [Myxoma virus]
gi|170664652|gb|ACB28808.1| small subunit ribonucleotide reductase [recombinant virus
6918VP60-T2]
Length = 322
Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats.
Identities = 93/334 (27%), Positives = 158/334 (47%), Gaps = 28/334 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
++D+ +L D + P++Y W Y A + W P EV + DL W+ LT DE
Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWNMYKKAVASFWTPEEVDISKDLKDWRV---LTPDE 57
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
+ IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I +
Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAMENIHSEMYSLLIDTY 117
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
++ E LF + I KA W ++ ++ D + + L +
Sbjct: 118 IINLQEKEKLFKAIETMDCIKQKAEWVQKWI------------RNKDATYAERLIA-FAS 164
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + KM G+ + I RDE LH +F + +K
Sbjct: 165 VEGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFKHLK-------HT 217
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+++ +++ EA ++E + E +P +G+N QY++F+A+R ++G +F
Sbjct: 218 PSEERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSA 277
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
T NPF +M E I L+ + NFFE RV++YQ+ +
Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQRMGVV 309
>gi|292397811|ref|YP_003517877.1| RR2b [Lymantria xylina MNPV]
gi|291065528|gb|ADD73846.1| RR2b [Lymantria xylina MNPV]
Length = 338
Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats.
Identities = 94/345 (27%), Positives = 153/345 (44%), Gaps = 30/345 (8%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
GEK + + +L + P++Y W Y A + W EV + D W+
Sbjct: 11 GEKPFDPQAEPLLRENPRRFVIFPIQYSDMWSMYKKAEASFWTVEEVDLSKDTRDWE--- 67
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D+ER IK L FFA+S+ +V N+V + + E R + Q E VHS +
Sbjct: 68 RLNDNERHFIKHVLAFFAASDGIVNENLVERFAQEVQVVEARCFYGFQIAMENVHSEMYS 127
Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
+I + E L N +P + KA WAL++ + + F + L
Sbjct: 128 TLIDTYVRSSEEKLRLLNAIETMPCVKEKAEWALRWIAS------------KEATFGERL 175
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
F V EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 176 VAFAAV-EGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVQ-- 232
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
+ + R ++ +A +E + E +P +GLN + QY++F+A+R +
Sbjct: 233 -----RPSAARVREIVTDAVAIEQRFLTEALPVRLLGLNCETMSQYIEFVADRLLVDLIG 287
Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL--KWD 352
+ T NP +M+ +I L+ + NFFE +V EYQ+ + K D
Sbjct: 288 TKHYN-TANPLDFMT-LISLEGKTNFFEKKVGEYQKFGVMFAKDD 330
>gi|322368525|ref|ZP_08043093.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus
paucihalophilus DX253]
gi|320551809|gb|EFW93455.1| ribonucleotide-diphosphate reductase subunit beta [Haladaptatus
paucihalophilus DX253]
Length = 330
Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats.
Identities = 165/324 (50%), Positives = 225/324 (69%), Gaps = 2/324 (0%)
Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
D N++LPL Y WA + Y + NN+W+P E+PMQDD++ W + L+D ER +I+ NLG
Sbjct: 9 EHDPNKILPLDYDWARDYYEAGVNNNWVPEEIPMQDDISQWN-GDALSDAERQLIEWNLG 67
Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147
FF+++ESL ANNIVLA+Y +++ PECRQYLLRQA+EEA+H+ TF Y SLG D L+
Sbjct: 68 FFSTAESLTANNIVLALYEYVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGFDPDYLYG 127
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
MY VPSI K + + T+ + P FT T +EFL+DL FYV+ EG++FY GFA
Sbjct: 128 MYDRVPSIAEKDEFVVDLTRAIDRPDFTIETDADVREFLRDLVGFYVIMEGVFFYAGFAM 187
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+L L R NKMVGI +Q++YI+RDESLH+ FG+D+IN+I+ ENP+ WT F + ++
Sbjct: 188 MLGLKRQNKMVGIGQQFEYILRDESLHVGFGVDLINEIRAENPNAWTDAFGDEVTDLITN 247
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
A LE YA+E P +G++A +Y++ IA+RR Q+ L+ + TENPFPWMSE +
Sbjct: 248 AVELEKIYAYEACPDEILGMSAAQFAEYVEHIADRRLAQLDLDEQYG-TENPFPWMSEQV 306
Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
DL KEKNFFET+VTEYQ G L W
Sbjct: 307 DLNKEKNFFETQVTEYQSGGSLDW 330
>gi|86132508|ref|ZP_01051102.1| ribonucleoside-diphosphate reductase small chain [Dokdonia
donghaensis MED134]
gi|85817069|gb|EAQ38253.1| ribonucleoside-diphosphate reductase small chain [Dokdonia
donghaensis MED134]
Length = 328
Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats.
Identities = 94/333 (28%), Positives = 157/333 (47%), Gaps = 28/333 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D + P+++ WE Y + + W E+ + DL WK LTDDER
Sbjct: 5 EPILAENKDRFVIFPIQHDDIWEWYKKSEASFWTAEEIDLHQDLVDWK--GKLTDDERYF 62
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E LFN P+I KA+WAL++ + F + L F V EG
Sbjct: 123 EVEKDKLFNALENFPAIKKKADWALKWIDS--------------PSFAERLIAFAAV-EG 167
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE +H +F + + N K +
Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHLHNHHL------VNKVPK 221
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ ++ A +E + E++P +G+N+ QY++++ +R ++ E ++ T N
Sbjct: 222 ERITEIIVNALDIEREFITESLPVSLIGMNSNLMTQYLEYVTDRLLTELDCEKVYN-TAN 280
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
PF +M +I L+ + NFFE RV EYQ+ +K
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGEYQKAGVVKD 312
>gi|58260834|ref|XP_567827.1| ribonucleotide reductase small subunit [Cryptococcus neoformans
var. neoformans JEC21]
gi|134117207|ref|XP_772830.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255448|gb|EAL18183.1| hypothetical protein CNBK2010 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229908|gb|AAW46310.1| ribonucleotide reductase small subunit, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 430
Score = 255 bits (650), Expect = 9e-66, Method: Composition-based stats.
Identities = 98/328 (29%), Positives = 153/328 (46%), Gaps = 28/328 (8%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L L P+KY W+ Y A + W E+ DL W + +T+ ER I
Sbjct: 102 ILRESESRFVLFPIKYNEIWQAYKHAQASFWTAEELDFGHDLIDWH--DRMTEQERFFIL 159
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
R L FFA+S+ +V NIV + E R + Q+ E VHS T+ +I + D
Sbjct: 160 RILAFFAASDGIVGENIVSQFALEVQIAEARAFYSFQSMIEQVHSETYSLLIETYVRDAQ 219
Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
E LF +P I KA+WAL+Y D+ + V + EG++
Sbjct: 220 EKDFLFRGMTNIPCIKQKADWALKYI--------------TDELPFRTRLVAFACVEGIF 265
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
F FA I L + M G+ + I RDE +H +F + N +K + +
Sbjct: 266 FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGMHTDFACLLYNHLK-------HRCSTDE 318
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
++ EA ++E + + +P +G+NA QYM+F+A+R +G ++ T NPF
Sbjct: 319 VHHIVSEALVIEKQFLTDALPCALIGINAHLMCQYMEFVADRLVVDLGYPKIYNAT-NPF 377
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
WM E+I L+ + NFFE+RV+ YQ+
Sbjct: 378 DWM-ELISLQGKANFFESRVSAYQKANV 404
>gi|126662515|ref|ZP_01733514.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria
bacterium BAL38]
gi|126625894|gb|EAZ96583.1| ribonucleoside-diphosphate reductase 1, beta subunit [Flavobacteria
bacterium BAL38]
Length = 325
Score = 255 bits (650), Expect = 9e-66, Method: Composition-based stats.
Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 28/334 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D + P+K+ WE Y W E+ + DL W N L DDE+
Sbjct: 5 EPILQENKDRFVIFPIKHQDIWEWYKKQEACIWTAEEIDLHTDLNDWN--NKLNDDEKYF 62
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + PE + + Q E +HS T+ +I + D
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYPEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E LF+ P+I KA WAL++ ++ S + + + EG
Sbjct: 123 EVEKNKLFHAIETFPAIKEKAQWALKWIESDS---------------FAERLIAFAAVEG 167
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE +H +F + + + + K +
Sbjct: 168 IFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLHSHH------IVNKVPK 221
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ ++ +A +E + E++P +G+NA QY++F+ +R ++G + ++ + N
Sbjct: 222 ERITEIIVDALNIERQFITESLPVSLIGMNATLMTQYLEFVTDRLLVELGCDRVYN-SSN 280
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
PF +M +I L+ + NFFE RV EYQ+ + D
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVAEYQKAGVMNSD 313
>gi|324509007|gb|ADY43795.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum]
Length = 337
Score = 255 bits (650), Expect = 9e-66, Method: Composition-based stats.
Identities = 97/346 (28%), Positives = 153/346 (44%), Gaps = 28/346 (8%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
I D+ +L + P+KY W Y +A + W E+ + D A
Sbjct: 4 GDISMMSATAKNSDEPLLAENPSRFVIFPIKYHDIWAFYKNAVASFWTADEIDLSRDYAD 63
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
W+ LTD ER I R L FFA+S+ +V N+ + PE R + Q E VH
Sbjct: 64 WE---KLTDGERFFISRVLSFFAASDGIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVH 120
Query: 128 SHTFQYIITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
S + +I + D E F+ + I KA+WAL++ D +
Sbjct: 121 SEMYSKMIEAYIKDPKEQMVHFDAIHQFECIKKKADWALRWID------------DRNSP 168
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
F L F V EG+ F FA I L + M G+ + I RDE LH +F +
Sbjct: 169 FPVRLIAFAAV-EGIMFSGSFAAIFWLKKRGVMKGLTHSNELISRDEGLHRDFACLLYK- 226
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ K Q++ ++ EA LE Y E +P +G+N QY++++A+
Sbjct: 227 ------YIKHKPSQEQVYEIIKEAVSLEQEYLTEALPVDLIGMNCRLMSQYIEYVADHLL 280
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++G ++ + NPF +M E + ++ + NFFE RV+EYQ+ L
Sbjct: 281 TELGYPKVYNAS-NPFDFM-ENLSIEAKTNFFERRVSEYQRAGVLS 324
>gi|86134368|ref|ZP_01052950.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp.
MED152]
gi|85821231|gb|EAQ42378.1| ribonucleoside-diphosphate reductase small chain [Polaribacter sp.
MED152]
Length = 323
Score = 255 bits (650), Expect = 9e-66, Method: Composition-based stats.
Identities = 93/332 (28%), Positives = 159/332 (47%), Gaps = 28/332 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ +L + + P+++ WE Y W E+ + DL W + LTDDER
Sbjct: 3 KQEPILQPNDNRFVIFPIQHNDLWEWYKKQQACFWTAEEIDLHSDLVDWTT--KLTDDER 60
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I +
Sbjct: 61 YFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYV 120
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
DE E LF P+I KA+WAL++ ++ + F + L F V
Sbjct: 121 KDEVEKDRLFRAIEVFPAIKKKADWALKWIES--------------ESFAERLIAFAAV- 165
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F F I L + + G+ + I RDE +H +F + + N H+ +
Sbjct: 166 EGIFFSGAFCSIFWLKKRGLLPGLTFSNELISRDEGMHCDFAVHLH------NNHIVNRV 219
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ + + ++ +A +E + E++P +G+NA QY++F+ +R + G E ++ T
Sbjct: 220 PKDRIKEIIVDALDIEREFVTESLPVSLIGMNAKLMTQYLEFVTDRLLLEFGCEKVYDVT 279
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
NPF +M E+I L+ + NFFE RV+EYQ+
Sbjct: 280 -NPFDFM-EMISLEGKTNFFEKRVSEYQKAGV 309
>gi|145553335|ref|XP_001462342.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124430181|emb|CAK94969.1| unnamed protein product [Paramecium tetraurelia]
Length = 355
Score = 255 bits (650), Expect = 9e-66, Method: Composition-based stats.
Identities = 90/336 (26%), Positives = 152/336 (45%), Gaps = 29/336 (8%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
N D+ +L + L P+KY W Y + W E+ + DL W+ LT D
Sbjct: 33 NYCDEPLLKQNPNRFVLFPIKYNDIWNMYKQHKASFWTAEEIDLYQDLKDWE---KLTAD 89
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+ IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I +
Sbjct: 90 EKHFIKYVLAFFAASDGIVNENLAQQFCTEVQVPEARCFYGFQIAMENIHSETYSLLIDT 149
Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
DE E L + VP I KA WA+++ S + + +
Sbjct: 150 YITDENEKNYLLHAIDNVPVIQKKAMWAMKWINENDS--------------FAERLIAFA 195
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
EG++F F I + + + M G+ + I RDE LH +F + + + +
Sbjct: 196 AVEGIFFSGSFCAIFWIKKRSLMPGLTFSNELISRDEGLHTDFACLLYKHLVNKMSNQRI 255
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
E ++ A +E + E +P +G+N+ +QY++F+A+R +G ++
Sbjct: 256 HE-------IISSAVEIEKEFISEALPVELIGMNSNLMKQYIEFVADRLIFALGAPKIYN 308
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++NPF WM +I L+ + NFFE RV +YQ+ +
Sbjct: 309 -SKNPFEWMD-MISLQGKTNFFERRVGDYQKAGVMS 342
>gi|261335316|emb|CBH18310.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats.
Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P+KY W+KY A ++ W + + +D+ W+ L D ER
Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKKAESSIWTVENIYLGNDMTDWE---KLDDGERH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFA+S+ +V N+ + PE R + Q E +HS T+ +I + +
Sbjct: 73 FIKHVLAFFAASDGIVLENLAERFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E L + R +P I KA WA+++ + +S F L F V E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAAV-E 178
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + + K
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY------IVNKLP 232
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M +I L+ + NFFE +V EYQ+ +
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323
>gi|289582310|ref|YP_003480776.1| ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099]
gi|289531863|gb|ADD06214.1| Ribonucleoside-diphosphate reductase [Natrialba magadii ATCC 43099]
Length = 330
Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats.
Identities = 160/331 (48%), Positives = 230/331 (69%), Gaps = 4/331 (1%)
Query: 23 RMLN--ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++N A D N++LP+ Y WA E Y + NN+W+P E+PMQDD++ W + L+D ER
Sbjct: 2 PIINTDAEHDPNKILPIDYDWAREYYEAGVNNNWVPEEIPMQDDVSQWN-GDALSDAERQ 60
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+++ NLGFF+++ESL ANNIVLA+Y H++ PECRQYLLRQA+EEA+H+ TF Y SLG
Sbjct: 61 LVEWNLGFFSTAESLTANNIVLAVYDHVTAPECRQYLLRQAYEEAIHTDTFIYCCDSLGF 120
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ ++ MY +PSI K + + T+ ++ F T + ++F++DL FYV+ EG++
Sbjct: 121 EPDYMYGMYDRIPSIAEKDEFVIDLTRVINQNGFVIETDEDLRDFIRDLVGFYVIMEGIF 180
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY GFA +L L R NKMVGI +Q++YIMRDESLH+ FG+D+I+QI++ENP +WT F +
Sbjct: 181 FYAGFAMMLGLKRQNKMVGIGQQFEYIMRDESLHVGFGVDLIDQIRMENPDVWTDAFGDE 240
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
++ EA LE YA+E P +G++A +Y++ IA+RR Q+ L + T+NPF
Sbjct: 241 VVELITEAVELEKIYAYEACPDEILGMSADQFAEYVEHIADRRLGQLDLPTQYG-TDNPF 299
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
PW+SE +DL KEKNFFET+VTEYQ G L W
Sbjct: 300 PWLSEQVDLNKEKNFFETQVTEYQSGGSLDW 330
>gi|297209|emb|CAA48969.1| C8L [Variola virus]
gi|745144|prf||2015436AF C8L gene
Length = 333
Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats.
Identities = 89/337 (26%), Positives = 151/337 (44%), Gaps = 29/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
VN+ + +L + + P++Y W Y A + W EV + D+ W N LT
Sbjct: 11 VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTP 67
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
DE+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I
Sbjct: 68 DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LFN +P + KA+WA ++ D + + +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAF 173
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL------- 226
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
++ R+++ +A +E + +P +G+N + YM+F+A+R ++G + ++
Sbjct: 227 YPPSEETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIY 286
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
T NP +M E I L+ + NFFE RV EYQ+ +
Sbjct: 287 NVT-NPSDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321
>gi|18640273|ref|NP_570429.1| CMLV039 [Camelpox virus]
gi|18482949|gb|AAL73746.1|AF438165_36 ribonucleotide reductase small subunit [Camelpox virus M-96]
gi|19717972|gb|AAG37497.1| CMP39L [Camelpox virus CMS]
Length = 319
Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats.
Identities = 84/332 (25%), Positives = 147/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT +E+
Sbjct: 2 EPILAKNQNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPNEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ +++ +A +E + +P +G+N + Y++F+A+R ++G + ++ N
Sbjct: 218 ETVISIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYIEFVADRLISELGFKKIYNVI-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PFDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|156102402|ref|XP_001616894.1| ribonucleoside-diphosphate reductase small chain [Plasmodium vivax
SaI-1]
gi|148805768|gb|EDL47167.1| ribonucleoside-diphosphate reductase small chain, putative
[Plasmodium vivax]
Length = 349
Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats.
Identities = 89/342 (26%), Positives = 165/342 (48%), Gaps = 29/342 (8%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
+ ++ ++++L+ +D L P+ Y W+ Y A + W E+ + DL ++
Sbjct: 20 FSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE- 78
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
L D+E+ IK L FFA+S+ +V N+ R + E +++ Q E +HS T
Sbjct: 79 --KLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSET 136
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I + DE E LF+ +P++ KA WA ++ +S
Sbjct: 137 YSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNS--------------FA 182
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+ V EG+ F F I + NK+ G+ + I RDE LH +F + + ++
Sbjct: 183 ERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLEN 242
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
+ P ++ + ++ EA +E ++ E++P +G+N+ QY++F+A+R +
Sbjct: 243 KLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECL 295
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
G +F + +NPF WM +I L+ + NFFE RV +YQ+ +
Sbjct: 296 GSPKIF-HAKNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335
>gi|221120499|ref|XP_002159812.1| PREDICTED: similar to hCG23833 [Hydra magnipapillata]
Length = 387
Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats.
Identities = 92/333 (27%), Positives = 154/333 (46%), Gaps = 27/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
D+ +L L P++Y W+ Y A + W EV + D W+ L E+
Sbjct: 59 DEPLLRENPRRFVLFPIQYKDIWKMYKQAEASFWTVEEVDLAADAVHWEE--KLKPQEKY 116
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+V + + PE R + Q E +HS + +I +L
Sbjct: 117 FISHVLAFFAASDGIVNENLVECFSQEVQLPEARAFYGFQIAIENIHSEMYSLLIDTLIK 176
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LFN +P + KA WAL++ D + V + E
Sbjct: 177 DPIEKSNLFNAIETMPCVQKKAVWALKWIN-------------KDCASFSERVVAFAAVE 223
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + N + G+ + I RDE LH +F + I K
Sbjct: 224 GIFFSGSFAAIFWLKKRNLLPGVTFSNELISRDEGLHCDFACLMYKHIVN-------KPS 276
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+++ + ++ +A +EI + E++P +G+N + Y++F A+R + +G + E
Sbjct: 277 EERVKQIIRDAVAIEIEFLTESLPCDLLGMNKSLMKTYIEFCADRLINALGYSKEWNV-E 335
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M E I L ++ NFFE+RV++YQ+ +
Sbjct: 336 NPFDFM-ENISLARKANFFESRVSDYQKAGVMD 367
>gi|150024561|ref|YP_001295387.1| ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium
psychrophilum JIP02/86]
gi|149771102|emb|CAL42569.1| Ribonucleoside-diphosphate reductase, beta subunit [Flavobacterium
psychrophilum JIP02/86]
Length = 325
Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats.
Identities = 93/334 (27%), Positives = 161/334 (48%), Gaps = 28/334 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P+K+ WE Y S + W E+ + DL W N L++DER
Sbjct: 5 EPILQENKNRFVIFPIKHHDIWEFYKSMEASFWTAEEIDLSQDLNDWN--NKLSNDERYF 62
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
+K L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D
Sbjct: 63 VKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 142 E---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E ELFN P+I KA+WALQ+ ++ S + + + EG
Sbjct: 123 EVEKDELFNALEVFPAIKKKADWALQWIESDS---------------FAERLIAFAAVEG 167
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE +H +F + + N K +
Sbjct: 168 IFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGVHCDFAVHLHNHHL------VNKVPK 221
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ R+++ +A +E + E++P +G+NA QY++F+A+R ++G + + T N
Sbjct: 222 ERIRSIIVDALNIEREFITESLPVSLIGMNAVLMTQYLEFVADRLLVELGCDREYN-TAN 280
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
PF +M +I L+ + NFFE +V EYQ+ + D
Sbjct: 281 PFDFMD-MISLQGKTNFFEKKVAEYQKAGVMNTD 313
>gi|303278144|ref|XP_003058365.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459525|gb|EEH56820.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 338
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 95/332 (28%), Positives = 158/332 (47%), Gaps = 30/332 (9%)
Query: 22 KRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ +L+A S+ + P+KYG WE Y A + W EV + DD+ W+ L+DDE+
Sbjct: 14 EPILDAAGSERFTMFPIKYGDIWEMYKKAEASFWTAEEVDLSDDMKHWE---KLSDDEKH 70
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + + PE R + Q E +HS + +I +
Sbjct: 71 FISHILAFFAASDGIVLENLGVRFMGEVQIPEARAFYGFQIAIENIHSEMYSLLIDAYIK 130
Query: 141 ---DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
+ LF +P + KA+WAL++ ++ F + L + E
Sbjct: 131 DAAQKKYLFEAMENIPCVAKKADWALKWIES-------------SATFAERLIA-FACIE 176
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + ++ K
Sbjct: 177 GIFFSGSFCSIYWLKKRGMMPGLTFSNELISRDEGLHRDFACLLYSYLQN-------KPD 229
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
R ++ EA +E + + +P VG+N +Y++F+A+ Q+GLE + T
Sbjct: 230 VSIVRQIVCEAVEIEKEFVCDALPVSLVGMNKDLMSEYIEFVADHLLGQLGLEKEYN-TV 288
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E+I L+ + NFFE RV EYQ+ +
Sbjct: 289 NPFEFM-ELISLQGKTNFFEKRVGEYQKSGVM 319
>gi|254449372|ref|ZP_05062814.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
proteobacterium HTCC5015]
gi|198261018|gb|EDY85321.1| ribonucleoside-diphosphate reductase, beta subunit [gamma
proteobacterium HTCC5015]
Length = 404
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 136/349 (38%), Positives = 191/349 (54%), Gaps = 5/349 (1%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T + + G V +DK+++N +D+NQL P KY WAWE +L+A NHW P ++ M
Sbjct: 61 EQTNAAQMSGGVNPVKAEDKKVVNGMADINQLAPFKYPWAWEYFLNANKNHWTPLDINMA 120
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D+ + LT +ER + L + +S+ + NI LA+ +S PE + Y RQ +
Sbjct: 121 QDVHDFHH--KLTLEERHVYTNVLSYLTTSDIMAMRNIGLAVMEKMSAPELQIYQARQVY 178
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
EE++H+ T+Q+ I +LGLD+GE++N YR VP I AK A + ++ P +D
Sbjct: 179 EESLHTWTYQHCIETLGLDQGEVYNRYRVVPEINAKIQIANRRLNSVMRPDIDLNDRDEL 238
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
FL F +FEG WFY GF+ I +L R M G AEQ QYIMRDE +H +FG+ V
Sbjct: 239 HNFLMSYIFFAGIFEGCWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHASFGLRVA 298
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
QI E + R M E E YA + +G +A +FIANR
Sbjct: 299 RQIMREENIQPDP---KAMREMWDECEAAEEGYARYLLRDPILGYSAEDHVNQFRFIANR 355
Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
R +++ LE F EN PW+ E +++KEKNFFETRVTEYQ G L W
Sbjct: 356 RANKLSLEEPFPGAENALPWLDEQANMRKEKNFFETRVTEYQVGGGLTW 404
>gi|301097698|ref|XP_002897943.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
infestans T30-4]
gi|262106388|gb|EEY64440.1| ribonucleoside-diphosphate reductase small chain [Phytophthora
infestans T30-4]
Length = 360
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 81/352 (23%), Positives = 152/352 (43%), Gaps = 41/352 (11%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ + +S + E + + L A + L P++ W+ Y A + W E+
Sbjct: 33 LKDELEMSEYKRKELSGELQPEPYLVANPNRFVLFPIQEHDVWQMYKKAEASFWTAEELD 92
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ DL W LTD+ER IK L FFA+S+ +V N+ + + PE R + Q
Sbjct: 93 LVHDLNDW---AKLTDNERHFIKHVLAFFAASDGIVNENLAMNFSNEVQIPEARCFYGFQ 149
Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
E +HS + +I + D E L +P + K
Sbjct: 150 IAIENIHSEVYSLLIDTYIKDAVEKDHLLRAIETIPCVQKKH------------------ 191
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
+ + + EG++F F + L + M G++ + I RDE +H +F
Sbjct: 192 --------SNERLLAFAAVEGIFFSGSFCSVFWLKKRGLMPGLSFSNEMISRDEGMHTDF 243
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ +++ + P + + ++ +A +E + +++P +G+N+ QY++
Sbjct: 244 ACLMYSKLVNKLP-------ESRVHEIIRDAVAIEHEFVCDSLPVELIGMNSALMCQYIE 296
Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
F+A+R + +G+ ++ +NPF WM +I L+ + NFFE RV EY +
Sbjct: 297 FVADRLLYSLGVSKIYNV-KNPFDWMD-MISLQGKTNFFEKRVGEYSKAGVG 346
>gi|254442775|ref|ZP_05056251.1| ribonucleoside-diphosphate reductase, beta subunit
[Verrucomicrobiae bacterium DG1235]
gi|198257083|gb|EDY81391.1| ribonucleoside-diphosphate reductase, beta subunit
[Verrucomicrobiae bacterium DG1235]
Length = 361
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 123/330 (37%), Positives = 195/330 (59%), Gaps = 2/330 (0%)
Query: 22 KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
K+++N R + LLPLKY WA+E Y + NHW P ++ M D+ WK +++ ER
Sbjct: 26 KKIINGRETMTFNLLPLKYNWAYEIYKTMKANHWEPEDIGMNKDIEQWKDTEQVSEIERW 85
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+I +G+F+++E +V +NI+ I ++ PE + L R A EE VH+ + Y+I+SLG+
Sbjct: 86 IIMMGIGYFSAAEGIVGDNILHVIRELVTAPELKLVLGRHAHEENVHADSLLYMISSLGI 145
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ E M+ ++P+I K + + + L + T T + Q+F +++F+F EG
Sbjct: 146 NPHECEAMFEDIPTIVKKNEFVTRQSHALRNDVDLTIT-ENKQKFAKNVFLFGQCMEGTQ 204
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY F ILSL R NK GI E ++Y +RDES H+ ++ + ENP +WT EF+ +
Sbjct: 205 FYGMFGMILSLYRQNKFRGIGEMFRYTLRDESNHIELLRNLFMDLIEENPDVWTPEFKAE 264
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
R + EA LE + + +P +GL QY+ +IA+RR GL+PL NP
Sbjct: 265 LRDAMSEAIALEKEFIADCLPVDSIGLRKEDFVQYIDYIADRRLEGCGLDPLTPGVTNPL 324
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PW++E++D+KKE+NFFE RVTEYQ+ + L+
Sbjct: 325 PWLAEMMDIKKEQNFFEGRVTEYQKASSLE 354
>gi|39977011|ref|XP_369893.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15]
gi|145016179|gb|EDK00669.1| hypothetical protein MGG_06408 [Magnaporthe oryzae 70-15]
Length = 403
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 155/353 (43%), Gaps = 40/353 (11%)
Query: 4 NTGLSPIQAGEKRVNVD----DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
+ P++ + D+ +L W+ Y A + W E+
Sbjct: 52 AKDVKPVEKPAVAPTIKAFEMDEPILQENPQRFV---------WQMYKKAEASFWTAEEI 102
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ DL W N LTDDE+ I L FFA+S+ +V N+V + PE R +
Sbjct: 103 DLSKDLHDWN--NKLTDDEKYFISHILAFFAASDGIVNENLVERFSAEVQIPEARCFYGF 160
Query: 120 QAFEEAVHSHTFQYIITSLGL---DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
Q E +HS T+ +I + LFN +P I KA+WAL++
Sbjct: 161 QIMMENIHSETYSLLIDTYIKETAQRTYLFNAIDTIPCIRKKADWALRWI---------- 210
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
D F L F VV EG++F FA I L + M G+ + I RDE LH +
Sbjct: 211 --TDKKSTFATRLIAFAVV-EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHTD 267
Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
F + + + + ++ + ++ +A +E + E +P +G+NA +QY+
Sbjct: 268 FACLLFSLLNN-------RPNKEVVKEIVVDAVKIEQEFLTEALPCALLGMNANLMKQYI 320
Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+F+A+R +G E ++ NPF +M E I L + NFFE RV EYQ+ +
Sbjct: 321 EFVADRLLVALGNEKVY-RATNPFDFM-ENISLGGKTNFFEKRVGEYQKAGVM 371
>gi|544843|gb|AAB29634.1| C8L product [variola virus VAR, India-1967, Peptide, 333 aa]
Length = 333
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 89/337 (26%), Positives = 152/337 (45%), Gaps = 29/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
VN+ + +L + + P++Y W Y A + W+ EV + D+ W N LT
Sbjct: 11 VNLVMEPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWIVEEVDISKDINDW---NKLTP 67
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
DE+ IK L FFA+S+ +V N+ + E R + Q E +HS + +I
Sbjct: 68 DEKYFIKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLID 127
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LFN +P + KA+WA ++ D + + +
Sbjct: 128 TYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAF 173
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 174 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL------- 226
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
++ R+++ +A +E + +P +G+N + YM+F+A+R ++G + ++
Sbjct: 227 YPPSEETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIY 286
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
T NP +M E I L+ + NFFE RV EYQ+ +
Sbjct: 287 NVT-NPSDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 321
>gi|290977320|ref|XP_002671386.1| predicted protein [Naegleria gruberi]
gi|284084954|gb|EFC38642.1| predicted protein [Naegleria gruberi]
Length = 338
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 92/334 (27%), Positives = 159/334 (47%), Gaps = 28/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +L L PL+Y WE Y A + W EV + D+ W + LT +E+
Sbjct: 17 KEEALLKENPHRFVLFPLEYPKIWEMYKKAMASFWTAEEVDLHTDITQWTT---LTPNEQ 73
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
IK L FFA+S+ +V N+ + PE R + Q E +H+ + +I +L
Sbjct: 74 HFIKSVLAFFAASDGIVNENLCQQFMAEVQIPEARCFYGFQIAIENIHAEMYSTLIETLI 133
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D+ E LFN VPS+ KA WA+++ + + + +
Sbjct: 134 KDQRERHRLFNAIDTVPSVQKKARWAMKWINN--------------ENLFAERLLAFACV 179
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F F I L + M G+A + I RDE LH +F + + +K +TK
Sbjct: 180 EGIFFSGSFCSIFWLKKRGLMPGLAFSNELISRDEGLHTDFACLLYSTLK------FTKL 233
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
QQ +++ EA +E + E++P +G+N+ +QY++ +A+R +G + ++ +
Sbjct: 234 PQQVVHSLVSEAVEIEKEFICESLPVDLIGMNSRLMQQYIEMVADRLLVSLGYDKIYN-S 292
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF WM+ +I + + NFFE +V EY + +
Sbjct: 293 PNPFDWMN-IISVSGKTNFFEKKVGEYAKANIMS 325
>gi|213402763|ref|XP_002172154.1| ribonucleoside-diphosphate reductase small chain
[Schizosaccharomyces japonicus yFS275]
gi|212000201|gb|EEB05861.1| ribonucleoside-diphosphate reductase small chain
[Schizosaccharomyces japonicus yFS275]
Length = 392
Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats.
Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 27/338 (7%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
K+ + D+ +L + P++Y W+ Y A + W E+ + DL W N L
Sbjct: 61 KKEDEKDEVVLTPNPRRFVMFPIEYHDIWQFYKKAEASFWTAEEIDLSKDLHDWD--NKL 118
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
DER I L +FA+S+ +V N++ + E R Q E +HS T+ +
Sbjct: 119 NKDERYFISTVLAYFAASDGIVNENLLSRFSSEVQIAEARCVYGFQIMIENIHSETYSLL 178
Query: 135 ITSLGLDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
+ + D E F+ + SI AKA WAL++ + + V
Sbjct: 179 LDTYIRDPYEKQRHFDAILTMGSIKAKAKWALRWIE-------------DPESIYAVRLV 225
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
+ EG++F FA I L + M G+ + I RDE +H +F + + +K
Sbjct: 226 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGVHTDFACLMFSHLK----- 280
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+ ++ ++ EA +E Y + +P +G+N QY++F+A+R +G E
Sbjct: 281 --HRPGKKVVERIIIEAVNIEKEYFTDALPVYLLGMNCDLMCQYIEFVADRLLLSLGNEK 338
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ T NPF +M E I L + NFFE +V++YQ +
Sbjct: 339 YYNVT-NPFDFM-ENISLAGKTNFFEKKVSDYQIAGVM 374
>gi|145352915|ref|XP_001420779.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581014|gb|ABO99072.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 346
Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats.
Identities = 92/331 (27%), Positives = 153/331 (46%), Gaps = 29/331 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D L P+K+ WE Y A + W EV + D W + L D+E+
Sbjct: 27 EPLLRDNPDRFCLFPIKHAKVWEMYKKAEASFWTAEEVDLTYDYRDWIT---LNDNEQHF 83
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+S+ +V N+ + PE R + Q E +HS + ++ + D
Sbjct: 84 ISHVLAFFAASDGIVLENLCSRFMTDVQLPEARSFYGFQLAIENIHSEMYSLLLDTYIKD 143
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ LF VP++ KA+WAL++ + D F + L + EG
Sbjct: 144 PKKKSDLFRAIHTVPTVAKKADWALKWIGS-------------DASFAERLVG-FACVEG 189
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE LH +F + + + ENP +
Sbjct: 190 IFFSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSML--ENPL-----SE 242
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ ++ +A +E + + + VG+NA Y++F+A+R Q+G+ L+ N
Sbjct: 243 KVLHQLVGDAVTIEKEFVCDALSCSLVGMNANMMSTYIEFVADRLLLQLGVSKLYNAV-N 301
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
PF WM E+I L+ + NFFE RV +YQ+ +
Sbjct: 302 PFDWM-ELISLQGKANFFEHRVDQYQKAGVM 331
>gi|221060582|ref|XP_002260936.1| ribonucleotide reductase small subunit [Plasmodium knowlesi strain
H]
gi|193811010|emb|CAQ42908.1| ribonucleotide reductase small subunit,putative [Plasmodium
knowlesi strain H]
Length = 349
Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats.
Identities = 88/345 (25%), Positives = 165/345 (47%), Gaps = 29/345 (8%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
+ ++ ++++L+ +D L P+ Y W+ Y A + W E+ + DL
Sbjct: 17 EKAFSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKD 76
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
++ L ++E+ IK L FFA+S+ +V N+ R + E +++ Q E +H
Sbjct: 77 FE---KLNENEKHFIKHVLAFFAASDGIVLENLASKFLRQVQITEAKKFYSFQIAVENIH 133
Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
S T+ +I + DE E LF+ +P++ KA WA ++ +S
Sbjct: 134 SETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNS------------- 180
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ V EG+ F F I + NK+ G+ + I RDE LH +F + +
Sbjct: 181 -FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSL 239
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ + P ++ + ++ EA +E ++ E++P +G+N+ QY++F+A+R
Sbjct: 240 LENKLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+G +F + +NPF WM +I L+ + NFFE RV +YQ+ +
Sbjct: 293 ECLGSRKIF-HAKNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335
>gi|332876813|ref|ZP_08444570.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
sp. oral taxon 329 str. F0087]
gi|332685239|gb|EGJ58079.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
sp. oral taxon 329 str. F0087]
Length = 324
Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats.
Identities = 94/330 (28%), Positives = 153/330 (46%), Gaps = 28/330 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D + P+++ W+ Y +A + W EV + DL W+ N L D+ER
Sbjct: 4 EPLLQDNKDRFVIFPIQHNDIWQFYKNAEASFWTAEEVDLSPDLHDWQ--NKLNDNERFF 61
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I R L FFA+S+ +V N+ + + + PE R + Q E +HS + +I + D
Sbjct: 62 ISRVLAFFAASDGIVNENLAINFLQEVQYPEARCFYGFQIMIENIHSEMYSLLIDTYVKD 121
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E L +P +T KA WAL++ F + L F V EG
Sbjct: 122 PAEKDYLLRAIETIPCVTKKAKWALRWI--------------TKGSFAERLIAFAAV-EG 166
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE LH +F + K +
Sbjct: 167 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYVNHLQ------NKLSE 220
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R ++ +A +E + + +P +G+NA QY++F+A+R +G ++ T N
Sbjct: 221 ETIREIIVDAVAIEKEFVTDALPVKLIGMNAELMCQYIEFVADRLLVALGCNKVWNAT-N 279
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
PF +M E+I L+ + NFFE RV EYQ+
Sbjct: 280 PFDFM-ELISLQGKTNFFERRVGEYQKTGV 308
>gi|241951880|ref|XP_002418662.1| ribonucleoside diphosphate reductase, putative [Candida
dubliniensis CD36]
gi|223642001|emb|CAX43965.1| ribonucleoside diphosphate reductase, putative [Candida
dubliniensis CD36]
Length = 394
Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats.
Identities = 90/338 (26%), Positives = 156/338 (46%), Gaps = 27/338 (7%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ ++ +L + + P+KY W+ Y + + W E+ + DLA W N +
Sbjct: 65 KQEESNEPLLTKDKTRHTIYPIKYPELWQFYKKSLASFWTAEELDLSKDLADWN--NKMN 122
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
++ER I R L FFA+S+ +V N+V + PE + Q E +HS T+ +I
Sbjct: 123 ENERFFISRVLAFFAASDGIVNENLVENFCAEVQIPEAQSVYKFQIMMENIHSETYSLLI 182
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E LFN +P I KA+WA+++ Q + + V
Sbjct: 183 ETYFKDPEEADFLFNAIENIPFIREKADWAIRWIQ-------------DEDALYAERLVA 229
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++F FA I L + M G+ + I RDE +H ++ + + +K +
Sbjct: 230 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLKNKPSP- 288
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+ ++ EA +E Y + +P +G+N QY++F+A+R G +
Sbjct: 289 ------EIIEKIITEAVTIEKKYFSDALPVSLLGMNCDLMCQYVEFVADRLLVAFGNKKY 342
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ T NPF +M E I L + NFFE RV++YQ+ ++
Sbjct: 343 YNVT-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVME 378
>gi|322817571|gb|EFZ25271.1| ribonucleoside-diphosphate reductase small chain, putative
[Trypanosoma cruzi]
Length = 337
Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats.
Identities = 89/336 (26%), Positives = 159/336 (47%), Gaps = 28/336 (8%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
++ +L D + P+KY W+KY A ++ W E+ + DLA W+ + +
Sbjct: 13 QEQEEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWE---KMNEG 69
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+ IK L FFA+S+ +V N+ + PE R + Q E VHS T+ ++ +
Sbjct: 70 EKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDT 129
Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
D E + + +P I KANWA+++ ++ SS + V +
Sbjct: 130 YITDTEEKDRMLHAISTIPCIQKKANWAIRWIRSSSS--------------FAERLVAFA 175
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
EG++F F + L + M G+ + I RDE LH +F + ++
Sbjct: 176 AVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------ENYIVN 229
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
K ++ R ++ A +E + +++P +G+NA Y++F+A+R +G E +
Sbjct: 230 KLPTERIREIICSAVDIEREFICDSIPVRLLGMNADLMSTYIEFVADRLLVALGNERHYN 289
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++NPF +M E+I L+ + NFFE +V EYQ+ +
Sbjct: 290 -SKNPFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 323
>gi|68485781|ref|XP_713171.1| hypothetical protein CaO19.9424 [Candida albicans SC5314]
gi|68485874|ref|XP_713125.1| hypothetical protein CaO19.1868 [Candida albicans SC5314]
gi|46434604|gb|EAK94008.1| hypothetical protein CaO19.1868 [Candida albicans SC5314]
gi|46434651|gb|EAK94054.1| hypothetical protein CaO19.9424 [Candida albicans SC5314]
gi|238883648|gb|EEQ47286.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
albicans WO-1]
Length = 394
Score = 253 bits (645), Expect = 3e-65, Method: Composition-based stats.
Identities = 89/338 (26%), Positives = 156/338 (46%), Gaps = 27/338 (7%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ ++ +L + + P+KY W+ Y + + W E+ + DL W N +
Sbjct: 65 KQEESNEPLLTPDKTRHTIYPIKYPELWQFYKKSLASFWTAEELDLSKDLDDWN--NKMN 122
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
++ER I R L FFA+S+ +V N+V + PE + Q E +HS T+ +I
Sbjct: 123 ENERFFISRVLAFFAASDGIVNENLVENFCAEVQIPEAKSVYKFQIMMENIHSETYSLLI 182
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E LFN +P I KA+WA+++ Q+ + + V
Sbjct: 183 ETYFKDPEEADFLFNAIDNIPFIRKKADWAIRWIQS-------------EDALYAERLVA 229
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG++F FA I L + M G+ + I RDE +H ++ + + +K +
Sbjct: 230 FAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLKNKPSS- 288
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+ ++ EA +E Y + +P +G+N QY++F+A+R G +
Sbjct: 289 ------EIIEKIITEAVDIEKEYFSDALPVSLLGMNCDLMCQYVEFVADRLLVAFGNKKY 342
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ T NPF +M E I L + NFFE RV++YQ+ ++
Sbjct: 343 YNVT-NPFDFM-ENISLAGKTNFFEKRVSDYQKAGVME 378
>gi|325953830|ref|YP_004237490.1| ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922]
gi|323436448|gb|ADX66912.1| Ribonucleoside-diphosphate reductase [Weeksella virosa DSM 16922]
Length = 323
Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats.
Identities = 90/331 (27%), Positives = 154/331 (46%), Gaps = 28/331 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L + + P+++ W+ Y A + W EV + D+ W+ N L DER
Sbjct: 2 NEPILQNNKNRFVIFPIQHDDIWQFYKKAEASFWTAEEVDLSSDMNDWQ--NKLNKDERY 59
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ + + + PE R + Q E +HS + +I +
Sbjct: 60 FISHVLAFFAASDGIVNENLAVNFVQEVQYPEARFFYGFQIMIENIHSEMYSLLIDTYIK 119
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E L +P + KA+WAL++ ++ F + L F V E
Sbjct: 120 DPKEKDHLLRAIETIPCVGKKADWALEWIES--------------DNFAERLIAFAAV-E 164
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + K
Sbjct: 165 GIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYVNHLK------NKLP 218
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
++ + ++ +A +E + E +P +G+NA QY++F+A+R +G + ++ T
Sbjct: 219 EETVQKIIADAVEVEKEFVTEALPVRLIGMNAELMCQYIEFVADRLLDALGCKKVWNAT- 277
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
NPF +M E+I L+ + NFFE RV EYQ+
Sbjct: 278 NPFDFM-ELISLQGKTNFFERRVGEYQKSGV 307
>gi|66822029|ref|XP_644369.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
AX4]
gi|66823381|ref|XP_645045.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
AX4]
gi|41019487|sp|P42521|RIR2_DICDI RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|29611978|gb|AAB72227.2| ribonucleotide reductase small subunit [Dictyostelium discoideum]
gi|60472492|gb|EAL70444.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
AX4]
gi|60472997|gb|EAL70945.1| ribonucleotide reductase small subunit [Dictyostelium discoideum
AX4]
Length = 338
Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats.
Identities = 94/337 (27%), Positives = 156/337 (46%), Gaps = 28/337 (8%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+ + + +L D L P+KY W Y A +HW+ E+ + +D W+ L
Sbjct: 5 NKKDTFIEPILKENKDRFVLFPIKYPDIWRMYKKALASHWVAEEIDLGNDNVDWE--YKL 62
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
TD+ER I L FFA+S+ +V N+ + PE R + Q E +HS T+ +
Sbjct: 63 TDNERHFISHVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAIENIHSETYSLL 122
Query: 135 ITSLGLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
I + D+ +LFN +P I KA WAL++ S + V
Sbjct: 123 IETYIKDKQTKDKLFNAIETIPCIKKKAEWALRWINDSDS--------------FAERLV 168
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
+ EG++F F I L + M G+ + I RDE LH +F + +++ +
Sbjct: 169 AFAAVEGIFFSGSFCSIFWLKKRGLMQGLTFSNELISRDEGLHCDFACLLYTKLQRKLDP 228
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+ M+ +A E + E++P +G+N+ S QY++F A+R +G +
Sbjct: 229 -------KVIEKMIRDAVECEKEFICESLPVDLIGMNSRSMSQYIEFCADRLVVSLGYKK 281
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+F + NPF WM E+I L+++ NFFE +V EY +
Sbjct: 282 IFN-SSNPFEWM-EMISLQRKSNFFEGKVAEYAKTGV 316
>gi|306478720|ref|NP_042072.2| Ribonucleoside-diphosphate reductase small chain [Variola virus]
gi|464615|sp|P33799|RIR2_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
Length = 319
Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats.
Identities = 87/332 (26%), Positives = 148/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P++Y W Y A + W EV + D+ W N LT DE+
Sbjct: 2 EPILAKNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDW---NKLTPDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E R + Q E +HS + +I + D
Sbjct: 59 IKHVLAFFAASDGIVNENLAERFCIEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WA ++ D + + + EG
Sbjct: 119 SNEKNYLFNAIETMPCVKKKADWAQKWIH--------------DSAGYGERLIAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------YPPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R+++ +A +E + +P +G+N + YM+F+A+R ++G + ++ T N
Sbjct: 218 ETVRSIITDAVSIEQEFLTVALPVKLIGMNCEMMKTYMEFVADRLISELGFKRIYNVT-N 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
P +M E I L+ + NFFE RV EYQ+ +
Sbjct: 277 PSDFM-ENISLEGKTNFFEKRVGEYQKMGVMS 307
>gi|163753569|ref|ZP_02160692.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia
algicida OT-1]
gi|161325783|gb|EDP97109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Kordia
algicida OT-1]
Length = 326
Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats.
Identities = 98/332 (29%), Positives = 160/332 (48%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D + P+K+ WE Y + + W E+ + DL W + L DDER
Sbjct: 6 EPILQENKDRFVIFPIKHADIWEWYKKSEASFWTAEEIDLHQDLTDWTT--KLNDDERYF 63
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D
Sbjct: 64 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E LF P+I KA+WALQ+ ++ F + L F V EG
Sbjct: 124 EAEKDKLFKAIENFPAIKKKADWALQWIES--------------PSFAERLIAFAAV-EG 168
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE +H +F + + N HL K +
Sbjct: 169 IFFSGAFCSIYWLKKRGIMPGLTFSNELISRDEGVHCDFAVHLH------NNHLVNKVPK 222
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ R ++ +A +E + E++P +G+NA QY++F+ +R ++G E + + N
Sbjct: 223 ERIRAIIVDALNIEREFITESLPVSLIGMNAKLMTQYLEFVTDRLLQELGCEKEYNVS-N 281
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M +I L+ + NFFE RV+EYQ+ L
Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVSEYQKAGVLN 312
>gi|162147608|ref|YP_001602069.1| ribonucleotide-diphosphate reductase subunit beta
[Gluconacetobacter diazotrophicus PAl 5]
gi|209542240|ref|YP_002274469.1| ribonucleotide-diphosphate reductase subunit beta
[Gluconacetobacter diazotrophicus PAl 5]
gi|161786185|emb|CAP55767.1| putative ribonucleotide reductase small subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|209529917|gb|ACI49854.1| Ribonucleoside-diphosphate reductase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 353
Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats.
Identities = 86/354 (24%), Positives = 161/354 (45%), Gaps = 20/354 (5%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ N TG +P A + +L + P +Y WA++ +L+ HW+P EVP
Sbjct: 4 ITNATGTAPESAPQPTGVEARLDLLTSNP---IYKPFRYPWAYDAWLTQQRVHWLPEEVP 60
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ DD+ W LT+ E+ ++ + FF S+ V N + R E L
Sbjct: 61 LADDVKDWH--RTLTESEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAF 118
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+ E +H + +++ ++G+ E E ++ + + + K ++ + + D
Sbjct: 119 SNIETIHIAAYSHLLDTIGMPEME-YSAFLKYKEMKDKYDYMQGF------------SVD 165
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ E + L F EG+ + FA +L+ R NK+ G+ + + +RDE+LH
Sbjct: 166 SKPEIARTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETLHCLSMAR 225
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
+ ENP +WT + + + E A+ G GL+ + Y++FI
Sbjct: 226 LFRVFIQENPEIWTDALRADIVQICRDIVEHEDAFIDLCFEMGPVEGLDGDLVKTYIRFI 285
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
A+RR + +GL+ ++ NP PW+ ++++ + NFFE R TEY + + W+
Sbjct: 286 ADRRLNLLGLDGIYDVPSNPLPWVDDMLNAVEHTNFFENRSTEYSRASTTGSWE 339
>gi|254492407|ref|ZP_05105579.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga
thiooxidans DMS010]
gi|224462299|gb|EEF78576.1| ribonucleoside-diphosphate reductase, beta subunit [Methylophaga
thiooxydans DMS010]
Length = 383
Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats.
Identities = 133/341 (39%), Positives = 187/341 (54%), Gaps = 5/341 (1%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
K +N DDKR++N +D+NQL P KY WAW +L+A NHW P ++ M D+ ++
Sbjct: 48 NNAKAINADDKRVINGEADINQLAPFKYPWAWNYFLNANKNHWTPLDINMAQDVHDYRH- 106
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
LT +ER + + L + +S+ L NI LA+ ++ PE + Y RQ +EEA+H+ T+
Sbjct: 107 -KLTLEERHVYENVLSYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTY 165
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
Q+ I ++GLD+ E++N YR VP I K A T+ +D + F+
Sbjct: 166 QHCIETIGLDQSEIYNRYRVVPEIHQKIKLANDRLDTVMRSDIDLRDRDELENFVMSYAF 225
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
F +FEG WFY GF+ I +L R M G AEQ QYIMRDE +H +FGI V QI E
Sbjct: 226 FAGIFEGSWFYNGFSPIFALQRRGLMKGTAEQLQYIMRDEVMHASFGIRVCKQIMKEENI 285
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+K + M EA E YA + +G + ++ ANRR Q+G E
Sbjct: 286 TLDP---KKVQQMFEEADAAEETYAGYILRDPILGYSKEVHHGQFRYTANRRAKQLGFEE 342
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
F E PW+ E +++KEKNFFET+VTEYQ G LKWD
Sbjct: 343 PFPGAEATLPWLDEQANMRKEKNFFETKVTEYQTGGGLKWD 383
>gi|329113329|ref|ZP_08242110.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter
pomorum DM001]
gi|326697154|gb|EGE48814.1| Ribonucleoside-diphosphate reductase subunit beta [Acetobacter
pomorum DM001]
Length = 339
Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats.
Identities = 95/348 (27%), Positives = 163/348 (46%), Gaps = 20/348 (5%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+S +G++ +L A P +Y WA++ +L+ HW+P EVP+ DD+
Sbjct: 1 MSEHMSGQEPQQEQKFDLLTANP---VYKPFRYPWAYDAWLTQQRLHWLPEEVPLADDVK 57
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W L + E+ ++ + FF S+ V N + R E L + E +
Sbjct: 58 DWH--RVLNEGEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAFSNIETI 115
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
H + Y++ +LG+ E E ++ + + + K ++ T T D+ E
Sbjct: 116 HIAAYSYLLDTLGMPETE-YSAFLKYKEMKDKYDYMQ------------TFTVDSKHEIA 162
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ L F EG+ + FA +L+ R NK+ G+ + + +RDE+LH I +
Sbjct: 163 KTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFI 222
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCH 305
ENP LWT++ + + + E A+ G GLNA + Y+ FIA+RR
Sbjct: 223 QENPELWTEQLRTELTDICRTIVEHEEAFIDLAFEMGAVEGLNAEQVKTYIHFIADRRLT 282
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
Q+GLEP++ T NP PW+ ++++ + NFFE R TEY + + W+
Sbjct: 283 QLGLEPIYNTTTNPLPWLDDMLNAVEHTNFFENRSTEYSRASTAGTWE 330
>gi|71648907|ref|XP_813233.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi
strain CL Brener]
gi|70878098|gb|EAN91382.1| ribonucleoside-diphosphate reductase small chain, putative
[Trypanosoma cruzi]
Length = 337
Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats.
Identities = 88/337 (26%), Positives = 160/337 (47%), Gaps = 28/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ ++ +L D + P+KY W+KY + ++ W E+ + DLA W+ + +
Sbjct: 12 LQEQEEPLLRENPDRYVIFPIKYHDIWKKYKESESSIWTVEEIDLSSDLADWE---KMNE 68
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ IK L FFA+S+ +V N+ + PE R + Q E VHS T+ ++
Sbjct: 69 GEKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLD 128
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E + + +P I KANWA+++ ++ SS + V +
Sbjct: 129 TYITDTEEKDRMLHAISTIPCIQKKANWAIRWIRSSSS--------------FAERLVAF 174
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F F + L + M G+ + I RDE LH +F + ++
Sbjct: 175 AAVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------ENYIV 228
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
K +++ R ++ A +E + + +P +G+NA Y++F+A+R +G E +
Sbjct: 229 NKLPKERIREIICSAVDIEREFICDAIPVRLLGMNADLMSTYIEFVADRLLVALGNERHY 288
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++NPF +M E+I L+ + NFFE +V EYQ+ +
Sbjct: 289 N-SKNPFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 323
>gi|71416121|ref|XP_810103.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma cruzi
strain CL Brener]
gi|70874586|gb|EAN88252.1| ribonucleoside-diphosphate reductase small chain, putative
[Trypanosoma cruzi]
Length = 337
Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats.
Identities = 89/336 (26%), Positives = 159/336 (47%), Gaps = 28/336 (8%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
++ +L D + P+KY W+KY A ++ W E+ + DLA W+ + +
Sbjct: 13 QEQEEPLLRENPDRYVIFPIKYHDIWKKYKEAESSIWTVEEIDLSSDLADWE---KMNEG 69
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+ IK L FFA+S+ +V N+ + PE R + Q E VHS T+ ++ +
Sbjct: 70 EKFFIKHVLAFFAASDGIVLENLAQRFMTEVQVPEVRCFYGFQIAIENVHSETYSVLLDT 129
Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
D E + + +P I KANWA+++ ++ SS + V +
Sbjct: 130 YITDTEEKDRMLHAISTIPCIQKKANWAIRWIRSSSS--------------FAERLVAFA 175
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
EG++F F + L + M G+ + I RDE LH +F + ++
Sbjct: 176 AVEGIFFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLY------ENYIVN 229
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
K ++ R ++ A +E + +++P +G+NA Y++F+A+R +G E +
Sbjct: 230 KLPTERIREIICSAVDIEREFICDSIPVRLLGMNADLMSTYIEFVADRLLVALGNERHYN 289
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++NPF +M E+I L+ + NFFE +V EYQ+ +
Sbjct: 290 -SKNPFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 323
>gi|91215505|ref|ZP_01252476.1| probable ribonucleoside-diphosphate reductase small chain
[Psychroflexus torquis ATCC 700755]
gi|91186457|gb|EAS72829.1| probable ribonucleoside-diphosphate reductase small chain
[Psychroflexus torquis ATCC 700755]
Length = 326
Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats.
Identities = 88/332 (26%), Positives = 158/332 (47%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + L P+ + WE Y + W E+ +Q D+ WK+ L+ DE+
Sbjct: 5 EPILEENKNRFVLFPITHPDIWEWYKKCEASFWTAEEIDLQQDITDWKT--KLSKDEQYF 62
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYTEAKFFYGFQIMVENIHSETYSLLIDTYVDD 122
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LF P+I KA+WALQ+ ++ S + + + EG
Sbjct: 123 DKEKDLLFKAIENFPAIKKKADWALQWIESDS---------------FAERLIAFAAVEG 167
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE +H +F + + N+ + +
Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGVHCDFAVHLHNEHL------VNQVPK 221
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ R ++ +A +E + E++P +G+N+ QY++F+A+R ++G + + T N
Sbjct: 222 ERIRAIIVDALTIEREFVTESLPVSLIGMNSNLMTQYLEFVADRLLFELGCDKEYG-TAN 280
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M +I L+ + NFFE RV EYQ+ +
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGEYQKAGVMN 311
>gi|301166951|emb|CBW26530.1| putative ribonucleoside-diphosphate reductase small chain subunit
[Bacteriovorax marinus SJ]
Length = 322
Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats.
Identities = 97/332 (29%), Positives = 156/332 (46%), Gaps = 27/332 (8%)
Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
+L D L PLKY +E Y + W E+ D+ W+ L DE+ I
Sbjct: 3 PILAPNDDRFVLFPLKYHSIFEMYKNHMAVFWTADELDFASDITDWE---KLNKDEQHFI 59
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
K L FFA+S+ +V N+ L Y + PE R + Q E +HS T+ +I + D
Sbjct: 60 KHILAFFAASDGIVNENLALRFYNDVQIPEARCFYGFQIAMENIHSETYSLLIDTYVKDP 119
Query: 143 ---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
ELF+ P + KA+WA+++ Q+ + F + L + EG+
Sbjct: 120 KEKDELFHAVTHFPFVEKKADWAMKWMQS-------------KRSFAERLIA-FAAIEGI 165
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
+F F I L + M G+ ++I RDE LH F + + E + ++
Sbjct: 166 FFSGSFCSIYWLKKRGLMPGLCTSNEFISRDEGLHCEFACHIHELLTPEE-----QLNKE 220
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
++ EA +E + E +P +G+NA +Y++F+A+ +++G E + TENP
Sbjct: 221 TITQIITEAVSIEKEFITEAIPVSLIGMNADMMSRYIEFVADYWLNRLGCEKAYN-TENP 279
Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
F WM E+I L+ + NFFE RV+EYQ+ L
Sbjct: 280 FDWM-ELISLEGKTNFFEKRVSEYQKPGVLGD 310
>gi|225320685|dbj|BAH29738.1| ribonucleoside-diphosphate reductase subunit M2 [Dicyema japonicum]
Length = 337
Score = 252 bits (642), Expect = 8e-65, Method: Composition-based stats.
Identities = 93/343 (27%), Positives = 162/343 (47%), Gaps = 28/343 (8%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
+ + ++ + D + +L + L P++Y + Y A + W EV + D+ W
Sbjct: 3 LPSEQEEFSDDQEPLLVSNPRRFVLFPIEYPDIFTMYKQALASIWTVEEVDLSKDIKHW- 61
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
N L DE+ I L FFA+S+ +V N+V + E R + Q E +HS
Sbjct: 62 --NILNSDEKRFISHVLAFFAASDGIVNENLVQRFSVEVQVSEARSFYGLQIAVENIHSE 119
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
+ +I + D E +F+ +P + KA+WA+++ ++ + F
Sbjct: 120 MYSLLIDTYISDFQEKDKMFSAIETMPFVKKKADWAIRWIES------------TESHFS 167
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ L F V EG++F FA I L + M G+ + I RDE LH +F + + +K
Sbjct: 168 ERLVAFAAV-EGIFFSGSFASIFWLKKRGVMPGLTYSNELISRDEGLHTDFACLLYHHLK 226
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ P + + ++ EA +LE + E +P +G+N QY++F+A+R +
Sbjct: 227 KKLP-------RDRILQIITEAVVLEKEFLTEALPVALIGMNVNLMSQYIEFVADRLIIE 279
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+G + + Y +NPF +M E I L + NFFE RV EYQ+ +
Sbjct: 280 LGYDKHY-YAQNPFDFM-ENISLSGKTNFFEKRVGEYQRMGVM 320
>gi|9633826|ref|NP_051904.1| gp015L [Rabbit fibroma virus]
gi|6578545|gb|AAF17899.1|AF170722_17 gp015L [Rabbit fibroma virus]
Length = 322
Score = 252 bits (642), Expect = 9e-65, Method: Composition-based stats.
Identities = 92/333 (27%), Positives = 155/333 (46%), Gaps = 28/333 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
++D+ +L D + P++Y W+ Y A + W P EV + DL W LT DE
Sbjct: 1 MEDEPVLKESLDRYVVFPIQYNDIWKMYKKAVASFWTPEEVDISKDLKDWH---ILTSDE 57
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
+ IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I +
Sbjct: 58 KYFIKHILAFFAASDGIVNENLAERFYVEVQIAEARCFYGFQIAIENIHSEMYSLLIDTY 117
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
+D E LF + I KA W ++ ++ D + + L +
Sbjct: 118 IIDIQEKEKLFKAIETMDCIKQKAEWVQKWI------------RNKDATYAERLIA-FAS 164
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + KM G+ + I RDE LH +F + +
Sbjct: 165 VEGIFFSGSFAAIFWLKKRGKMPGLTFSNELISRDEGLHCDFACLMFKHLN-------HT 217
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+ ++ ++ EA ++E + + +P +G+N QY++F+A+R ++G +F
Sbjct: 218 PSETRATDIIKEAVVIEQQFLTKALPVRLIGINCDLMCQYIEFVADRLVTELGYSKIFSA 277
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
T NPF +M E I L+ + NFFE RV++YQ+
Sbjct: 278 T-NPFDFM-ENISLEGKTNFFEKRVSDYQRMGV 308
>gi|322795965|gb|EFZ18591.1| hypothetical protein SINV_11129 [Solenopsis invicta]
Length = 426
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 85/341 (24%), Positives = 152/341 (44%), Gaps = 28/341 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKN 72
+ N + + +L + + P++Y WE Y A + W EVP+ D W
Sbjct: 92 KDDFNPELEPLLQEGPNRFVIFPIQYPDIWEMYKKAVASFWTIEEVPLHKLDKKDWDE-- 149
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L DE+ I L FFA+S+ +V N++ + + E R + Q E +HS +
Sbjct: 150 KLNSDEKYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYGFQIAIENIHSEMYS 209
Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
+I + D E LFN +P + KA WAL + + +
Sbjct: 210 LLIETYISDPKEKDFLFNAIETLPCVGKKAKWALNWIN-------------HESATFPER 256
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
+ + EG++F FA I L + M G+ + I RDE LH +F + I +
Sbjct: 257 VIAFAAVEGIFFSGSFAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLIFKHIIQKP 316
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
+ ++++ +A +E + + +P +G+N Y++F+A+R +G
Sbjct: 317 SF-------EHVKSIIMDAVEIEKEFLTQALPVELIGMNCSLMCNYIEFVADRLFVALGF 369
Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
E ++ +ENPF +M+ I L+ + NFFE +V EY++ ++
Sbjct: 370 EKVYN-SENPFSFMN-FISLEGKTNFFEKKVGEYKKFGVVE 408
>gi|47208564|emb|CAF96041.1| unnamed protein product [Tetraodon nigroviridis]
Length = 352
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 155/353 (43%), Gaps = 42/353 (11%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + P++Y W+ Y A + W EV + DLA W + L +E+
Sbjct: 5 EPLLQENPRRFVIFPIQYPDIWKMYKQAQASFWTVEEVDLSKDLAHW---DSLKPEEKHF 61
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+S+ +V N+V + + PE R + Q E+VHS + +I + D
Sbjct: 62 ISHVLAFFAASDGIVNENLVQRFCQEVQVPEARSFYSYQVLIESVHSEMYSLLINTYIRD 121
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WALQ+ D+ F + L F V EG
Sbjct: 122 LKEREHLFNAIYTMPCVKRKADWALQWIN------------DSTSTFGERLVAFAAV-EG 168
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN--------- 249
++F FA I L + M G+ + I RDE LH F + + + +
Sbjct: 169 IFFSGSFASIYWLKKRGLMPGLTYSNELISRDEGLHCTFACLLYSYLVKKPSEDRVKDII 228
Query: 250 -----------PHLWTKEFQQKSRTMLHEATLLE-IAYAHETMPKGFVGLNAPSCEQYMQ 297
+ + ++ +AT + E +P +G+N +QY++
Sbjct: 229 TKAVSIEQVGGSYRSMDGNKPNREVLIKDATCFCLQEFLTEALPVDLIGMNRCLMKQYIE 288
Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
F+A+R +GL ++ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 289 FVADRLFADLGLAKMYN-AENPFDFM-EAISLEGKTNFFEKRVAEYQRFGIMS 339
>gi|70936723|ref|XP_739266.1| ribonucleotide reductase small subunit [Plasmodium chabaudi
chabaudi]
gi|56516136|emb|CAH80811.1| ribonucleotide reductase small subunit, putative [Plasmodium
chabaudi chabaudi]
Length = 349
Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats.
Identities = 90/345 (26%), Positives = 163/345 (47%), Gaps = 29/345 (8%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
+ ++ ++++LN S L P+ Y W Y A + W E+ + DL
Sbjct: 17 EKEFSDLQKNKECNEKILNKESSRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKD 76
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
++ L +E+ IK L FFA+S+ +V N+ R + E +++ Q E +H
Sbjct: 77 FE---KLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVQIIEAKKFYAFQIAVENIH 133
Query: 128 SHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
S T+ +I + DE E LF+ +P+I KA WA ++ +S
Sbjct: 134 SETYSLLIDNYIRDEKERLNLFHAIENIPAIKNKALWAAKWINDTNS------------- 180
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ V EG+ F F I + NK+ G+ + I RDE LH +F + +
Sbjct: 181 -FAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSL 239
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ + P ++ + ++ EA +E ++ E++P +G+N+ QY++F+A+R
Sbjct: 240 LENKLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+G +F +++NPF WM +I L+ + NFFE RV +YQ+ +
Sbjct: 293 ECLGCSKVF-HSKNPFSWMD-LISLQGKTNFFEKRVADYQKSGVM 335
>gi|258542157|ref|YP_003187590.1| ribonucleotide-diphosphate reductase subunit beta [Acetobacter
pasteurianus IFO 3283-01]
gi|256633235|dbj|BAH99210.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|256636294|dbj|BAI02263.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-03]
gi|256639347|dbj|BAI05309.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-07]
gi|256642403|dbj|BAI08358.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-22]
gi|256645458|dbj|BAI11406.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-26]
gi|256648511|dbj|BAI14452.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-32]
gi|256651564|dbj|BAI17498.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654555|dbj|BAI20482.1| ribonucleotide-diphosphate reductase beta subunit [Acetobacter
pasteurianus IFO 3283-12]
Length = 339
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 95/348 (27%), Positives = 163/348 (46%), Gaps = 20/348 (5%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+S +G++ +L A P +Y WA++ +L+ HW+P EVP+ DD+
Sbjct: 1 MSEHMSGQEPQQEQKFDLLTANP---VYKPFRYPWAYDAWLTQQRLHWLPEEVPLADDVK 57
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W L + E+ ++ + FF S+ V N + R E L + E +
Sbjct: 58 DWH--RVLNEGEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAFSNIETI 115
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
H + Y++ +LG+ E E ++ + + + K ++ T T D+ E
Sbjct: 116 HIAAYSYLLDTLGMPETE-YSAFLKYKEMKDKYDYMQ------------TFTVDSKHEIA 162
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ L F EG+ + FA +L+ R NK+ G+ + + +RDE+LH I +
Sbjct: 163 KTLAAFGAFTEGLQLFASFAILLNFPRFNKLKGMGQIVSWSVRDETLHCLSIIRLFRVFI 222
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCH 305
ENP LWT++ + + + E A+ G GLNA + Y+ FIA+RR
Sbjct: 223 QENPELWTEQLRTELTDICRTIVEHEEAFIDLAFEMGAVEGLNAEQVKTYIHFIADRRLT 282
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
Q+GLEP++ T NP PW+ ++++ + NFFE R TEY + + W+
Sbjct: 283 QLGLEPIYNTTTNPLPWLDDMLNAVEHTNFFENRATEYSRASTSGTWE 330
>gi|74025554|ref|XP_829343.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei]
gi|70834729|gb|EAN80231.1| ribonucleoside-diphosphate reductase small chain [Trypanosoma
brucei]
Length = 337
Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats.
Identities = 91/333 (27%), Positives = 156/333 (46%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P+KY W+KY A +N W + + +D+ W+ L D ER
Sbjct: 16 EEPLLTENPDRYVIFPIKYPDIWQKYKKARSNFWAMENIYLGNDMTDWE---KLDDGERH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFA+ + +V N V + PE R + Q E +HS T+ +I + +
Sbjct: 73 FIKHVLAFFAARDGIVLENFVQRFMCEVQVPEVRCFYGFQIAMENIHSETYSVLIDTYVV 132
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E L + R +P I KA WA+++ + +S F L F V E
Sbjct: 133 DPDEKQRLLHAIRTIPCIEKKAKWAIEWIGSQTS-------------FPTRLVAFAAV-E 178
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE LH +F + + + K
Sbjct: 179 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYEKY------IVNKLP 232
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + ++ A +E + + +P +G+N+ QY++F+A+R +G + + ++
Sbjct: 233 RDRVLEIICNAVSIEREFICDALPVRLIGMNSQLMTQYIEFVADRLLVSLGYDRHYN-SK 291
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M +I L+ + NFFE +V EYQ+ +
Sbjct: 292 NPFDFMD-MISLQGKTNFFEKKVGEYQKAGVMS 323
>gi|225010999|ref|ZP_03701465.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
MS024-3C]
gi|225004906|gb|EEG42862.1| Ribonucleoside-diphosphate reductase [Flavobacteria bacterium
MS024-3C]
Length = 328
Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 94/334 (28%), Positives = 156/334 (46%), Gaps = 28/334 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D + P+K+ WE Y W E+ + +DL W N L +DER
Sbjct: 6 EPILTENPDRFVIFPIKHDDLWEWYKKCEACFWTAEEIDLSEDLNDWN--NKLNEDERYF 63
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
+K L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D
Sbjct: 64 VKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E LF P+I KA+WAL++ ++ F + L F V EG
Sbjct: 124 EKEKNKLFKALENFPAIKEKADWALKWIES--------------PSFAERLIAFAAV-EG 168
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE +H ++ + + N K +
Sbjct: 169 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHLHNHHL------INKVPK 222
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ R +L +A +E + E++P +G+NA QY++F+ +R ++ E + + N
Sbjct: 223 ARIREILVDALNIERTFITESLPASLIGMNAKLMTQYLEFVTDRLLVELQCEKEYNVS-N 281
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
PF +M +I L+ + NFFE RV+EYQ+ L D
Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVSEYQKAGVLNKD 314
>gi|323453718|gb|EGB09589.1| hypothetical protein AURANDRAFT_60022 [Aureococcus anophagefferens]
Length = 393
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 88/324 (27%), Positives = 149/324 (45%), Gaps = 27/324 (8%)
Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
S L P+K W Y A + W EV + D W+ L + ER + R L
Sbjct: 78 DSSRFTLFPIKDAGLWAMYKRAEASFWTAEEVDLGQDKQHWEQ---LDEGERYFLSRVLA 134
Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--- 144
FFA+S+ +V N+V + ++ PE R + Q E VH + ++ + D GE
Sbjct: 135 FFAASDGIVLENLVERFAQEVTLPEARFFYAFQGAIEGVHQEMYSLLLETYVEDPGEREA 194
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
L + +P + AKA+WA+++T + D + L F V EG++F
Sbjct: 195 LTRAHDLMPCVKAKADWAMKWTAS-------------DAPYAARLLAFAAV-EGVFFSGS 240
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F I L + + G+ + I RDE LH +F + +++ + ++ +
Sbjct: 241 FCAIFWLRKRGILPGLGFANELISRDEGLHCDFACALYSRLPGHL-----RLSDAEATAI 295
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
+ EA E+ + + +P VG+NA Y++F+A+R +G ++ NPF +M
Sbjct: 296 ISEAVDTEVDFVTDALPVSLVGMNAKLMTDYVKFVADRLLASLGHPKIYGAA-NPFDFM- 353
Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
E+I ++ + NFFE RV EYQ+
Sbjct: 354 ELISMQGKTNFFEKRVAEYQKANV 377
>gi|15617531|ref|NP_258331.1| RR2B [Spodoptera litura NPV]
gi|15553267|gb|AAL01745.1|AF325155_57 ribonucleotide reductase small subunit homolog [Spodoptera litura
NPV]
Length = 333
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 96/343 (27%), Positives = 164/343 (47%), Gaps = 33/343 (9%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
N+ D+ +L + P++Y W Y A + W EV + DL+ W + L +
Sbjct: 8 NMSDEPLLQENPRRFVMFPIEYPDIWNMYKKAEASFWTVEEVDLSKDLSDW---DSLKES 64
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
ER IK L FFA+S+ +V N+V + + E R + Q E VHS + +I +
Sbjct: 65 ERNFIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQVAIENVHSEMYSLLIDT 124
Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
D E LFN +P+I KA W++++ ++ + F + L F
Sbjct: 125 YVKDNDEKRRLFNAIETMPAIAKKAEWSIKWIKSAT------------ATFAERLIAFAA 172
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
V EG++F FA I + + M G+ + I RDE LH +F + + I
Sbjct: 173 V-EGIFFSGSFAAIFWMKKRGLMPGLTFSNELISRDEGLHTDFACLMYSHIVN------- 224
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
K + + ++ EA +E + E +P +G+N +Y++F+A+R ++ E +
Sbjct: 225 KPTRDRILDIITEAVAIENEFVTEALPVAMLGMNNDLMSKYIEFVADRLLLELIGERHYN 284
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ-----GAELKWD 352
T+NPF +M+ +I L+ + NFFE +V+EYQ+ G +L+ D
Sbjct: 285 -TKNPFDFMN-LISLEGKTNFFEKKVSEYQKYGVMSGNKLEDD 325
>gi|284043177|ref|YP_003393517.1| ribonucleoside-diphosphate reductase [Conexibacter woesei DSM
14684]
gi|283947398|gb|ADB50142.1| Ribonucleoside-diphosphate reductase [Conexibacter woesei DSM
14684]
Length = 364
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 118/328 (35%), Positives = 194/328 (59%), Gaps = 2/328 (0%)
Query: 23 RMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
R++ R + LLPL+YGWA+E Y + NHW P +V M D+ W+ + L++ +R +
Sbjct: 30 RVVGGRETMTFNLLPLRYGWAYELYRTMKANHWEPEDVQMAKDIEQWRDERALSEIDRWI 89
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
++ +G+F+++E +V +NI+ + ++ E + L R A EE +H+ + Y+I+SLG+D
Sbjct: 90 VRMAIGYFSAAEGIVGDNILHVVRELMTASELKLVLGRHAHEENIHADSLLYMISSLGID 149
Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
E M+ ++P+I AK + +Q L + +++F+F EG F
Sbjct: 150 PHECEAMFDDIPTIRAKNAFVTSASQALRR-DLDMQDPRSVALLAKNIFLFGQCMEGTQF 208
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
Y F +LSL R K+ GI ++Y +RDES H+ ++ ++ ENP +WT EF+ +
Sbjct: 209 YGLFGMVLSLYRQGKLPGIGTMFRYTLRDESNHIELFRRLLRELVAENPEIWTAEFRDEL 268
Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
R ++ EA LE + + +P VGLNA QY+ +IA+RR +GLEPL ENP P
Sbjct: 269 RELMREAVALEQRFIDDCLPVEGVGLNADEFAQYIDYIADRRLEGVGLEPLKPGVENPLP 328
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349
W++E++D++KE+NFFE RVTEYQ+ + L
Sbjct: 329 WLAELMDVRKEQNFFEGRVTEYQKASAL 356
>gi|156839886|ref|XP_001643629.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156114248|gb|EDO15771.1| hypothetical protein Kpol_478p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 394
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 95/333 (28%), Positives = 155/333 (46%), Gaps = 27/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +LN + + P++Y +E Y A + W E+ + DL+ W + L +ER
Sbjct: 67 KNEPLLNEDKNRLIMHPIRYPDIYEAYKKAEASFWTAEEIDLSKDLSDWN--DKLNSNER 124
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+ + PE R + Q E +HS T+ +I +
Sbjct: 125 FFISRVLAFFAASDGIVNENLTENFSVEVKVPEARCFYGFQIMIENIHSETYSLLIDTYI 184
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WAL++ + + F + L +
Sbjct: 185 KDPKESDFLFNAIDYIPQIKEKAEWALRWIN------------NDEALFGERLVA-FASI 231
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH +F + + + +
Sbjct: 232 EGVFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGLHTDFASLLFSHLDNKPDP----- 286
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ EA +E Y + +P +G+NA QY++F+A+R G E +K
Sbjct: 287 --AIVEKIVTEAVEIEKRYFIDALPVALLGMNAKLMNQYVEFVADRLLVSFGNEKYYKV- 343
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
ENPF +M E I L + NFFE RV++YQ+ + +
Sbjct: 344 ENPFDFM-ENISLAGKTNFFEKRVSDYQKASVI 375
>gi|294055010|ref|YP_003548668.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis
DSM 45221]
gi|293614343|gb|ADE54498.1| Ribonucleoside-diphosphate reductase [Coraliomargarita akajimensis
DSM 45221]
Length = 360
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 125/327 (38%), Positives = 201/327 (61%), Gaps = 3/327 (0%)
Query: 24 MLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N + + +LPLKY WA++ Y + NNHW P ++PMQ D+ LW+S + L+D ER +I
Sbjct: 28 IINGKDTMFFNILPLKYQWAYDLYKTMKNNHWEPEDIPMQKDVELWRSAD-LSDAERWII 86
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
K +G+F+++E +V +NI ++ PE + L R A EE +H+ + Y+I+SLG++
Sbjct: 87 KMAIGYFSAAEGIVGDNIQHVTRELVTAPELKLLLGRHAHEENIHADSLVYMISSLGINP 146
Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
E M+ ++ +I K + + ++ L T T D Q F +++F+F EG FY
Sbjct: 147 HECEAMFEDIDTIERKTAFVVNNSRGLRRDMDLTTTADK-QAFTKNMFLFGQCMEGTQFY 205
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
F +LSL R NK GI + ++Y +RDES H+ ++I + EN +WT EF+++ R
Sbjct: 206 GLFGMVLSLYRQNKFPGIGQMFRYTLRDESNHIEVFRNLIMDLIEENEDVWTPEFREELR 265
Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
++ EA LE + + +P VGL+A QY+ +IA+RR +GL PL +NPFPW
Sbjct: 266 DLMREAVTLEKDFIRDCLPVNSVGLSADEFCQYIDYIADRRLEGVGLAPLSPGVDNPFPW 325
Query: 323 MSEVIDLKKEKNFFETRVTEYQQGAEL 349
++E++D+KKE+NFFE RVTEYQ+ + L
Sbjct: 326 LAEMMDIKKEQNFFEGRVTEYQKASAL 352
>gi|82538850|ref|XP_723858.1| ribonucleotide reductase small chain [Plasmodium yoelii yoelii str.
17XNL]
gi|145580416|pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|145580417|pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|145580418|pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|145580419|pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|145580420|pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|145580421|pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|145580422|pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|145580423|pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
gi|23478298|gb|EAA15423.1| Ribonucleotide reductase, small chain [Plasmodium yoelii yoelii]
Length = 349
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 90/338 (26%), Positives = 162/338 (47%), Gaps = 29/338 (8%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
++ ++++LN S+ L P+ Y W Y A + W E+ + DL ++ L
Sbjct: 24 QKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFE---KL 80
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
+E+ IK L FFA+S+ +V N+ R + E +++ Q E +HS T+ +
Sbjct: 81 NVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLL 140
Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
I + DE E LF+ +P+I KA WA ++ +S + V
Sbjct: 141 IDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNS--------------FAERIV 186
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
EG+ F F I + NK+ G+ + I RDE LH +F + + ++ + P
Sbjct: 187 ANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP- 245
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+ + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G
Sbjct: 246 ------ENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSK 299
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+F +++NPF WM +I L+ + NFFE RV +YQ+ +
Sbjct: 300 VF-HSKNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 335
>gi|73974202|ref|XP_858105.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53
inducible) isoform 4 [Canis familiaris]
Length = 374
Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats.
Identities = 100/355 (28%), Positives = 160/355 (45%), Gaps = 37/355 (10%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E V D++ +L S + P++Y W+ Y A + W EV + DL W N
Sbjct: 24 ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS +
Sbjct: 81 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D + LFN +P + KA+WAL++ + + +
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIE-------------DRKSTFGERV 187
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPS 247
Query: 251 HLWTKEF---------QQKSRTMLHEATLLEI-------AYAHETMPKGFVGLNAPSCEQ 294
+E + M+ + LEI + E +P G +G+N +Q
Sbjct: 248 EERVREIIVNAVEIEQVSREAYMISTSLFLEIATCRSKHEFLTEALPVGLIGMNCVLMKQ 307
Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
Y++F+A+R ++G +F ENPF +M E I L+ + NFFE RV EYQ+ A +
Sbjct: 308 YIEFVADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 360
>gi|307192386|gb|EFN75622.1| Ribonucleoside-diphosphate reductase subunit M2 [Harpegnathos
saltator]
Length = 344
Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats.
Identities = 88/341 (25%), Positives = 156/341 (45%), Gaps = 28/341 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD-DLALWKSKN 72
++ N D + +L + + P++Y W+ Y A + W EVP+ D W+
Sbjct: 10 KEEFNPDLEPLLQEEPNRFVIFPIRYPDIWDMYKKAVASFWTIEEVPLHKLDKKDWEE-- 67
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L DER I L FFA+S+ +V N++ + + E R + Q E +HS +
Sbjct: 68 KLNSDERYFISHVLAFFAASDGIVNENLIERFCQEVKISEARCFYGFQIAIENIHSEMYS 127
Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
+I + D E LFN +P +T KANWAL + + +
Sbjct: 128 LLIETYISDLKEKDFLFNAIETLPCVTKKANWALNWIN-------------HESATFPER 174
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
V + EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 175 IVAFAAVEGIFFSGSFAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFKHVIQKP 234
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
++ +T++ +A +E + + +P +G+N Y++F+A+R +G
Sbjct: 235 SF-------ERVKTIIMDAVEIEKEFLTQALPVKLIGMNCTLMCTYIEFVADRLFVALGF 287
Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ ++ +ENPF +M I L+ + NFFE +V EY++ ++
Sbjct: 288 DKVYN-SENPFSFMD-FISLEGKTNFFEKKVGEYKKFGVME 326
>gi|18640102|ref|NP_570176.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus]
gi|18448509|gb|AAL69755.1| SPV016 ribonucleotide reductase, small subunit [Swinepox virus]
Length = 320
Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats.
Identities = 88/330 (26%), Positives = 148/330 (44%), Gaps = 29/330 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + P+KY W+ Y + + W EV + DL W + LT DE+
Sbjct: 2 EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFASS+ +V N+ Y + E R + Q E +HS + +I + D
Sbjct: 59 IKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN + + KA+WA ++ + + + V + EG
Sbjct: 119 NIEKMHLFNAIETMECVKKKADWARKWI--------------SSNKVYGERVVAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I + + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSK 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ +++ +A +E + +P +G+N QY++F+A+R ++G E +F N
Sbjct: 218 EVITSIIIDAVNIEKEFLTVAIPVDLIGMNCCLMSQYIEFVADRLLTELGCEKVFNV-YN 276
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
PF +M E I L+ + NFFE RV+EYQ+
Sbjct: 277 PFSFM-EYISLEGKTNFFERRVSEYQKMGV 305
>gi|260061082|ref|YP_003194162.1| putative ribonucleoside-diphosphate reductase small chain
[Robiginitalea biformata HTCC2501]
gi|88785214|gb|EAR16383.1| probable ribonucleoside-diphosphate reductase small chain
[Robiginitalea biformata HTCC2501]
Length = 328
Score = 250 bits (637), Expect = 3e-64, Method: Composition-based stats.
Identities = 92/337 (27%), Positives = 161/337 (47%), Gaps = 28/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
++ ++ +L D + P+++ WE Y W E+ + DL+ W N L+D
Sbjct: 1 MSAAEEPILKENKDRFVIFPIQHHDLWEWYKKCEACFWTAEEIDLHQDLSDWN--NKLSD 58
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
DE+ IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I
Sbjct: 59 DEKYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLID 118
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ DE E LF P+I KA+WAL++ ++ F + L F
Sbjct: 119 TYVKDEKEKNVLFQAIENFPAIKKKADWALKWIES--------------PSFAERLIAFA 164
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
V EG++F F I L + M G+ + I RDE +H ++ + + N HL
Sbjct: 165 AV-EGIFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHLH------NNHLV 217
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
K +++ ++ A +E + E++P +G+NA QY++F+ +R ++ E ++
Sbjct: 218 NKVPKERITQIITNALDIEREFITESLPVSLIGMNAKLMTQYLEFVTDRLLVELECEKVY 277
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ NPF +M +I L+ + NFFE RV+EYQ+ +
Sbjct: 278 N-STNPFDFMD-MISLQGKTNFFEKRVSEYQKAGVMN 312
>gi|330949820|gb|EGH50080.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae Cit 7]
Length = 359
Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats.
Identities = 175/296 (59%), Positives = 232/296 (78%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADIALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVE 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
VINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y+
Sbjct: 304 VINQIKIENPHLWDAEMKKEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYL 359
>gi|305665630|ref|YP_003861917.1| putative ribonucleoside-diphosphate reductase small chain
[Maribacter sp. HTCC2170]
gi|88710386|gb|EAR02618.1| probable ribonucleoside-diphosphate reductase small chain
[Maribacter sp. HTCC2170]
Length = 328
Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats.
Identities = 87/334 (26%), Positives = 156/334 (46%), Gaps = 28/334 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D + P+++ WE Y W E+ + DL W + L DDE+
Sbjct: 6 EPILQENKDRFVIFPIQHHDLWEWYKKQEACIWTAEEIDLHQDLTDWNT--KLNDDEKYF 63
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D
Sbjct: 64 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LF P+I KA+WAL++ ++ F + L F V EG
Sbjct: 124 DKEKDILFKAIENFPAIKKKADWALKWIES--------------PSFAERLIAFAAV-EG 168
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE +H ++ + + + K +
Sbjct: 169 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHLHKNH------IVNKVTK 222
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ ++ +A +E + E++P +G+N+ QY++F+ +R ++ + ++ + N
Sbjct: 223 ERITDIIVDALNIEREFITESLPVSLIGMNSKLMTQYLEFVTDRLLVELECDKVYN-SSN 281
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
PF +M +I L+ + NFFE RV+EYQ+ L D
Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVSEYQKAGVLNKD 314
>gi|120437796|ref|YP_863482.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii
KT0803]
gi|117579946|emb|CAL68415.1| ribonucleoside-diphosphate reductase small chain [Gramella forsetii
KT0803]
Length = 325
Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats.
Identities = 90/334 (26%), Positives = 159/334 (47%), Gaps = 28/334 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D + P+K+ W+ Y W E+ + +DL+ W N L+ DER
Sbjct: 5 EPILQENKDRFVIFPIKHHDIWDWYKKMEACFWTAEEIDLHEDLSDWN--NKLSADERYF 62
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
+K L FFA+S+ +V N+ + E + + Q E +HS T+ +I + +
Sbjct: 63 LKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKN 122
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E LF P+I KA+WAL++ ++ S + + + EG
Sbjct: 123 EKEKDQLFKAIEVFPAIKKKADWALKWIESDS---------------FAERLIAFAAVEG 167
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE +H +F + + NQ + +
Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLHNQHL------VNQVPK 221
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+K R +L +A +E + E++P +G+NA QY++F+ +R ++ E + + N
Sbjct: 222 EKIREILIDALNIEREFVTESLPVSLIGMNAKLMTQYLEFVTDRLLVELDCEKEYNVS-N 280
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
PF +M +I+L+ + NFFE RV+EYQ+ + D
Sbjct: 281 PFDFMD-MINLQGKTNFFEKRVSEYQKAGVMNKD 313
>gi|225164890|ref|ZP_03727109.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
gi|224800504|gb|EEG18881.1| Ribonucleoside-diphosphate reductase [Opitutaceae bacterium TAV2]
Length = 362
Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats.
Identities = 117/330 (35%), Positives = 192/330 (58%), Gaps = 3/330 (0%)
Query: 22 KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
KR++N R + LLPLKY WA++ Y + NHW P ++PM D+ W+ +TD ER
Sbjct: 26 KRVINGRETMTFNLLPLKYQWAYDLYRTMKANHWEPEDIPMGKDIEQWRDPRAVTDQERW 85
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+I+ +G+F+++E +V +NI ++ PE + L R A EE +H+ + Y+I+SLG+
Sbjct: 86 IIRMGIGYFSAAEGIVGDNIQHVTRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ E M+ ++P+I K + ++ ++ L + Q +++F+F EG
Sbjct: 146 NPHECEAMFEDIPTIVRKNEFVVKNSRQLRR-DLDLTQPENKQLLARNMFLFGQCMEGTQ 204
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY F ILSL R NK GI + ++Y +RDES H+ +++ + ENP +WT F+++
Sbjct: 205 FYGLFGMILSLYRQNKFPGIGQMFRYTLRDESNHIEVFRNLLMDLVEENPEIWTPGFKEE 264
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENP 319
R + EA LE + + +P VGL Y+ +IA+RR +GL P+ +NP
Sbjct: 265 LRETMREAVTLEKEFIRDCLPVNAVGLAVDEFLTYIDYIADRRLEGVGLAPISATPIKNP 324
Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
PW++E++D+KKE+NFFE RVTEYQ+ + L
Sbjct: 325 LPWLAEMMDIKKEQNFFEGRVTEYQKASSL 354
>gi|284039889|ref|YP_003389819.1| ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74]
gi|283819182|gb|ADB41020.1| Ribonucleoside-diphosphate reductase [Spirosoma linguale DSM 74]
Length = 349
Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats.
Identities = 88/332 (26%), Positives = 147/332 (44%), Gaps = 29/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L L P+K+ WE Y + + W E+ + D+ W S L D ER
Sbjct: 8 EPILEEDKGRFVLFPIKHWDIWEYYKTHEASFWTAEEIDLGQDMKDWNS---LNDGERHF 64
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+S+ +V N+ + + E + + Q E +HS T+ +I + D
Sbjct: 65 ISHVLAFFAASDGIVNENLAVNFLSEVQYAEAKCFYGFQVMMENIHSETYSLLIDTYIKD 124
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E L N +P + KA WAL++ S + + + V EG
Sbjct: 125 PVEKDRLLNAIDTIPCVQKKAEWALRWIDNGS---------------FAERLIAFAVVEG 169
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE LH +F + H+ K +
Sbjct: 170 IFFSGSFCSIYWLKKRGMMPGLTFSNELISRDEGLHRDFACMLYT------DHIVNKLPE 223
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ ++ A +E + + +P +G+NA +QY+ F+A+ +GL ++ N
Sbjct: 224 SQIYDIIRNAVEIEQEFVADALPVSLIGMNAELMKQYIAFVADHLLVTLGLRKMYNVA-N 282
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M +I L+ + NFFE RV EYQ+G +
Sbjct: 283 PFDFMD-MISLQGKTNFFEKRVGEYQRGEVMS 313
>gi|312130971|ref|YP_003998311.1| ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM
17132]
gi|311907517|gb|ADQ17958.1| Ribonucleoside-diphosphate reductase [Leadbetterella byssophila DSM
17132]
Length = 328
Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats.
Identities = 87/333 (26%), Positives = 153/333 (45%), Gaps = 29/333 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + P+K+ WE Y A + W E+ + D W S L D ER
Sbjct: 10 EPLLMDDPTRFVIFPIKHNDIWEFYKKAEASFWTAEELDLSQDHKDWAS---LNDGERHF 66
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+S+ +V N+ + ++ E + + Q E +H+ T+ +I + D
Sbjct: 67 ISHVLAFFAASDGIVNENLAVGFLSNVQYAEAKCFYGFQIMIENIHAETYSLLIDTYIKD 126
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E + N +P + KA+WA+++ + F++ L F V EG
Sbjct: 127 TTERQRMLNAIETIPCVKKKADWAIRWIEQ--------------GTFIERLIAFAAV-EG 171
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE LH +F + + + K +
Sbjct: 172 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHRDFACLLYTKY------IVNKLPE 225
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ T++ +A +E + + +P +G+NAP QY++F+A+ + L+ ++ T N
Sbjct: 226 EQVYTIIKDAVEIEKEFVSDALPVSLIGMNAPQMCQYIEFVADHLLESLNLKKVYNAT-N 284
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
PF +M +I L+ + NFFE RV EYQ+
Sbjct: 285 PFDFMD-LISLQGKTNFFEKRVGEYQKAGVTAD 316
>gi|1710399|sp|P50649|RIR2_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase small subunit;
AltName: Full=Ribonucleotide reductase R2 subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|349790|gb|AAA29754.1| ribonucleotide reductase R2 subunit [Plasmodium falciparum]
Length = 322
Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats.
Identities = 88/331 (26%), Positives = 157/331 (47%), Gaps = 27/331 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+R+LN SD L P+ Y + Y A W E+ DL ++ L ++E+
Sbjct: 2 RRILNKESDRFTLYPILYPDVFPFYKKAEACFWTAEEIDYSSDLKDFE---KLNENEKHF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ ++ R + E +++ Q E +HS T+ +I + D
Sbjct: 59 IKHVLAFFAASDGIVLENLAVSFLREVQITEAKKFYSFQIAVENIHSETYSLLIDNYIKD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E LF+ +P++ KA WA ++ +S + V EG
Sbjct: 119 EKERLNLFHAIENIPAVKNKALWAAKWINDTNS--------------FAERIVANACVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
+ F F I + NK+ G+ + I RDE LH +F + + + + P +
Sbjct: 165 ILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLDNKLPEQMVQNIV 224
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+++ +E ++ E++P +G+N+ QY++F+A+R +G +F +++N
Sbjct: 225 KEAG-----GVEVEKSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKIF-HSKN 278
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
PF WM +I L+ + NFFE RV +YQ+ +
Sbjct: 279 PFNWMD-LISLQGKTNFFEKRVADYQKSGVM 308
>gi|211956300|ref|YP_002302368.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84]
gi|115503095|gb|ABI99013.1| ribonucleotide reductase small subunit [Deerpox virus W-1170-84]
Length = 321
Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats.
Identities = 93/332 (28%), Positives = 151/332 (45%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L ++ + P+ Y W Y A + W EV + DL WK LTD+ER
Sbjct: 2 EPLLVESNNRFVIFPIVYNDIWIMYKKAVASFWTTEEVDLSKDLLDWK---KLTDNERYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + D
Sbjct: 59 IKNILAFFAASDGIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E L + + KA WA ++ D + + + L F V EG
Sbjct: 119 VDEKNHLLKAIDTIDCVKEKAKWAEKWI------------LDKESSYGERLVAFAAV-EG 165
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + Q+
Sbjct: 166 IFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKQLL-------HPPNP 218
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ ++ EA +E ++ +P +G+N QY++F+A+R ++G +FK +EN
Sbjct: 219 SRIINIIVEAVSIEKSFLTTALPVKLIGMNCELMCQYIEFVADRLLSELGCTKIFK-SEN 277
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV++YQ+ +
Sbjct: 278 PFDFM-ESISLEGKTNFFEKRVSDYQKMGIMS 308
>gi|296116311|ref|ZP_06834927.1| ribonucleotide-diphosphate reductase subunit beta
[Gluconacetobacter hansenii ATCC 23769]
gi|295977130|gb|EFG83892.1| ribonucleotide-diphosphate reductase subunit beta
[Gluconacetobacter hansenii ATCC 23769]
Length = 334
Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats.
Identities = 87/330 (26%), Positives = 157/330 (47%), Gaps = 20/330 (6%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L A P +Y WA++ +L+ HW+P EVP+ DD+ W LT+ ER ++
Sbjct: 18 LLTANP---VYKPFRYPWAYDAWLTQQQVHWLPEEVPLADDVKDWH--RSLTESERHLVT 72
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
+ FF S+ V N + + E L + E +H + +++ ++G+ E
Sbjct: 73 QIFRFFTQSDVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPES 132
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ + + + K ++ ++ + E + L F EG+ +
Sbjct: 133 E-YSAFLKYKEMKDKYDYMQEF------------SVSNKYEIARTLAAFGAFTEGLQLFA 179
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
FA +L+ R NK+ G+ + + +RDE+LH + ENP +WT++ Q R
Sbjct: 180 SFAILLNFPRFNKLKGMGQIVSWSVRDETLHCVSMARLFRVFVQENPEIWTQKLQDDIRQ 239
Query: 264 MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
+ + E A+ + G GL+A ++Y++F+ANRR Q+GL+ L+ NP PW
Sbjct: 240 ICRDIVEHEDAFIDLSFEMGPVEGLDAAQVKRYIRFVANRRLGQLGLDGLYDVATNPLPW 299
Query: 323 MSEVIDLKKEKNFFETRVTEYQQ-GAELKW 351
+ E+++ + NFFE R TEY + + W
Sbjct: 300 VDEMVNAVEHANFFENRSTEYSRAATQGTW 329
>gi|89890041|ref|ZP_01201552.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria
bacterium BBFL7]
gi|89518314|gb|EAS20970.1| ribonucleoside-diphosphate reductase small chain [Flavobacteria
bacterium BBFL7]
Length = 330
Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats.
Identities = 89/337 (26%), Positives = 157/337 (46%), Gaps = 28/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ + +L D + P+++ WE Y W E+ +Q D+ W+ N L
Sbjct: 1 MQTTQEPILQENPDRFVIFPIQHDDLWEWYKKQQACIWTAEEIDLQVDITDWQ--NSLNS 58
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
DER IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I
Sbjct: 59 DERYFIKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLID 118
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D+ E LF P+I KA+WA+++ ++ F + L F
Sbjct: 119 TYVKDDAEKDQLFRAIENFPAIKLKADWAMKWIES--------------PSFAERLIAFA 164
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
V EG++F F I L + M G+ + I RDE +H +F + + N
Sbjct: 165 AV-EGIFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLHNHHL------V 217
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
K +++ ++ +A +E + E++P +G+NA QY++F+ +R ++ +P++
Sbjct: 218 NKVPKERITEIIVDALNIEREFITESLPASLIGMNAKLMTQYLEFVTDRLLGELECDPVY 277
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
T NPF +M +I ++ + NFFE RV EYQ+ +
Sbjct: 278 NVT-NPFDFMD-LIGMEGKTNFFEKRVGEYQKAGVMN 312
>gi|255724924|ref|XP_002547391.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
tropicalis MYA-3404]
gi|240135282|gb|EER34836.1| ribonucleoside-diphosphate reductase small chain 1 [Candida
tropicalis MYA-3404]
Length = 387
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 88/333 (26%), Positives = 150/333 (45%), Gaps = 27/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L + P+KY W Y + + W E+ + D W+ N + DER
Sbjct: 63 NEPLLREDPSRRTVFPIKYPEIWTFYKKSVASFWTAEEIDLSKDFDDWE--NKMNKDERF 120
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I R L FFA+S+ +V N+V + PE + Q E +HS T+ +I +
Sbjct: 121 FISRVLAFFAASDGIVNENLVENFCTEVKLPEAKSVYKFQIMMENIHSETYSLLIETYFK 180
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LFN + I KA+WA+++ Q D + F + L + E
Sbjct: 181 DPKEADFLFNAIDNIKYIGEKADWAIRWIQ------------DEEALFAERLVA-FAAIE 227
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G+ + I RDE +H ++ + + ++ +
Sbjct: 228 GIFFSGSFASIFWLKKRGLMPGLTFSNELICRDEGIHTDYACLLFSYLENKPDP------ 281
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
++ EA +E Y + +P +G+N QY+++ A+R G + + T
Sbjct: 282 -SIIEKIITEAVSIEKKYFSDALPVSLLGMNCDLMCQYVEYCADRLLVAFGNDKYYNVT- 339
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M E I L + NFFE RV++YQ+ ++
Sbjct: 340 NPFDFM-ENISLAGKTNFFEKRVSDYQRAGVME 371
>gi|226294144|gb|EEH49564.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides
brasiliensis Pb18]
Length = 325
Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats.
Identities = 90/313 (28%), Positives = 148/313 (47%), Gaps = 27/313 (8%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
W+ Y A + W EV + DL W N L DDER I L FFA+S+ +V N
Sbjct: 9 KQIWQMYKKAEASFWTAEEVDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNEN 66
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSIT 156
+V + PE R + Q E +HS T+ +I + + + LF+ +P I
Sbjct: 67 LVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIR 126
Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
KA+WA+++ + D + F Q L F V EG++F FA I L +
Sbjct: 127 KKADWAIRWIE------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGL 173
Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
M G+ + I RDE LH +F + + ++ + + + ++ EA +E +
Sbjct: 174 MPGLTFSNELISRDEGLHTDFACLLFSHLR-------HRPSPEAVQKIITEAVAIEQEFL 226
Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336
+ +P +G+NA QY++F+A+R +G + ++ + NPF +M I L + NFF
Sbjct: 227 TDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKVYN-STNPFDFMD-NISLTGKTNFF 284
Query: 337 ETRVTEYQQGAEL 349
E RV +YQ+ +
Sbjct: 285 EKRVGDYQKAGVM 297
>gi|40556174|ref|NP_955259.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus]
gi|40233999|gb|AAR83582.1| CNPV236 ribonucleotide reductase small subunit [Canarypox virus]
Length = 323
Score = 247 bits (629), Expect = 2e-63, Method: Composition-based stats.
Identities = 89/335 (26%), Positives = 147/335 (43%), Gaps = 28/335 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
+ + +L D + P+++G W Y A + W EV + DL WK L +E
Sbjct: 1 MSSEPLLVNNPDRFVIFPIQHGDIWRMYKQAVASFWTVEEVDLSYDLIDWK---NLKPEE 57
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA S+ +V N+V + + PE R + Q E +HS + +I +
Sbjct: 58 RRFISYILAFFAVSDGIVNENLVEKFCQEVQIPEARCFYGFQIAIENIHSEMYSLLIDTY 117
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D E LF+ R + + K+ WAL++ D + V +
Sbjct: 118 IDDNNEKKRLFSSMRTMDCVRKKSEWALKWIN--------------DSAPYGERLVAFAA 163
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + M G+ + I RDE LH +F + P
Sbjct: 164 VEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFTNYLSHKP----- 218
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
Q + ++ A +E + E + +G+N+ S +Y++F+++R +G +
Sbjct: 219 -SQDRVYEIIDSAVSVETEFLTEALSIDLIGMNSKSMIEYIKFVSDRLLVSLGFSKKYNV 277
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L+ + NFFE RV+ YQ+ +
Sbjct: 278 -ENPFSFM-ENISLEGKANFFEKRVSNYQKMGVMS 310
>gi|238023979|ref|YP_002908211.1| Ribonucleotide reductase subunit beta [Burkholderia glumae BGR1]
gi|237878644|gb|ACR30976.1| Ribonucleotide reductase, beta subunit [Burkholderia glumae BGR1]
Length = 337
Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats.
Identities = 134/337 (39%), Positives = 187/337 (55%), Gaps = 5/337 (1%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
K V+DKR++N D+NQL P +Y WAWE +LSA NHW P E+ M DD+ + + L
Sbjct: 5 KPARVEDKRVVNGAGDINQLAPFRYAWAWECFLSANKNHWTPLEISMSDDVHDFHHR--L 62
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
+ E+ + + L + +S+ L NI LA+ ++ PE + Y RQ +EEA+H+ T+Q+
Sbjct: 63 SPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEALHTWTYQHC 122
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
I SLGLD+ E++N YR VP I AK + + + P +D EF F
Sbjct: 123 IESLGLDQQEIYNRYRVVPQIHAKIALSNRRLNRMLEPGLDLHDRDTLHEFALAYLFFAA 182
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
VFEG WFY GF+ + +L R M A+Q+QYIMRDE LH FGI VI Q+ E
Sbjct: 183 VFEGTWFYNGFSPVFALQRRGLMKATAQQFQYIMRDEVLHCGFGIRVIRQLLEEE---HL 239
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
+ + + EA E AYA + +G +A + +FIANRR Q+ + F
Sbjct: 240 RLDPHAVQQIWEEAEAAERAYAQYILRDPILGYSAELHCEQFRFIANRRATQLSMPAPFP 299
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
N PW+ E +L+KEKNFFETRVT+YQ G L W
Sbjct: 300 GATNALPWLDEQANLRKEKNFFETRVTDYQSGGALDW 336
>gi|302536805|ref|ZP_07289147.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp.
C]
gi|302445700|gb|EFL17516.1| ribonucleoside-diphosphate reductase subunit beta [Streptomyces sp.
C]
Length = 356
Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats.
Identities = 103/323 (31%), Positives = 174/323 (53%), Gaps = 9/323 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D+A LT E+ MI R + FFA+
Sbjct: 35 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTPAEQHMIGRLVAFFATG 91
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F+
Sbjct: 92 DSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFDAV 151
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
E+PSI KA + ++ ++ T + FL +L F EG++FY FA +
Sbjct: 152 EEIPSIREKAQFCFKWMDSVEKIE-RLETAADRRRFLLNLICFAACIEGLFFYGAFAYVY 210
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML EA
Sbjct: 211 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKEAV 270
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ + + G G+N S +Y++ +A++R ++G P++ ++NPF +M E+ +
Sbjct: 271 EAELQFGRDLCGDGLPGMNTDSMREYLECVADQRLVRLGFPPVYG-SQNPFSFM-ELQGV 328
Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
++ NFFE R + YQ E D
Sbjct: 329 QELTNFFERRPSAYQVAVEGTVD 351
>gi|295670491|ref|XP_002795793.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides
brasiliensis Pb01]
gi|226284878|gb|EEH40444.1| ribonucleotide reductase R2 subunit variant [Paracoccidioides
brasiliensis Pb01]
Length = 325
Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats.
Identities = 89/313 (28%), Positives = 148/313 (47%), Gaps = 27/313 (8%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
W+ Y A + W E+ + DL W N L DDER I L FFA+S+ +V N
Sbjct: 9 KQIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERYFISHVLAFFAASDGIVNEN 66
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSIT 156
+V + PE R + Q E +HS T+ +I + + + LF+ +P I
Sbjct: 67 LVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIKEPKQRTYLFDAIDTIPCIR 126
Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
KA+WA+++ + D + F Q L F V EG++F FA I L +
Sbjct: 127 KKADWAIRWIE------------DKESTFAQRLVAFAAV-EGIFFSGSFASIFWLKKRGL 173
Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
M G+ + I RDE LH +F + + ++ + + + ++ EA +E +
Sbjct: 174 MPGLTFSNELISRDEGLHTDFACLLFSHLR-------HRPSPEAVQKIITEAVAIEQEFL 226
Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336
+ +P +G+NA QY++F+A+R +G + ++ + NPF +M I L + NFF
Sbjct: 227 TDALPCALLGMNAKLMCQYIEFVADRLLVALGNKKVYN-STNPFDFMD-NISLTGKTNFF 284
Query: 337 ETRVTEYQQGAEL 349
E RV +YQ+ +
Sbjct: 285 EKRVGDYQKAGVM 297
>gi|62637405|ref|YP_227403.1| Ribonucleotide reductase small subunit [Deerpox virus W-848-83]
gi|115503265|gb|ABI99183.1| ribonucleotide reductase small subunit [Deerpox virus W-848-83]
Length = 321
Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats.
Identities = 94/332 (28%), Positives = 152/332 (45%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L ++ + P+ Y W Y A + W EV + DL WK LTD+ER
Sbjct: 2 EPLLVESNNRFVIFPIIYNDIWIMYKKAIASFWTTEEVDLSKDLLDWK---KLTDNERYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + D
Sbjct: 59 IKNILAFFAASDGIVNENLAQRFYSEVQCSEARCFYGFQIAIENIHSEMYSLLIDTYITD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E L + I KA WA ++ D + + + L F V EG
Sbjct: 119 VDEKNHLLKAIDTIDCIKEKAKWAEKWI------------LDKESTYGERLVAFAAV-EG 165
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + Q+
Sbjct: 166 IFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKQLL-------YPPST 218
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ ++ EA +E ++ + +P +G+N QY++F+A+R ++G +FK +EN
Sbjct: 219 SRIINIIVEAVSIEKSFLTKALPVKLIGMNCELMCQYIEFVADRLLSELGCNKIFK-SEN 277
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV++YQ+ +
Sbjct: 278 PFDFM-ESISLEGKTNFFEKRVSDYQKMGIMS 308
>gi|17551968|ref|NP_497821.1| RiboNucleotide Reductase family member (rnr-2) [Caenorhabditis
elegans]
gi|1172941|sp|P42170|RIR2_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|3873950|emb|CAA84688.1| C. elegans protein C03C10.3, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 381
Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats.
Identities = 97/352 (27%), Positives = 160/352 (45%), Gaps = 29/352 (8%)
Query: 2 ANNTGLSPIQAGEKRVNVD-DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ +D D+ ML + + PLK+ W Y A + W EV
Sbjct: 41 TKAASAEETNNESEVNELDADEPMLQDLDNRFVIFPLKHHDIWNFYKKAVASFWTVEEVD 100
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ D+ W+ + DE+ I R L FFA+S+ +V N+ + E R + Q
Sbjct: 101 LGKDMNDWE---KMNGDEQYFISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQ 157
Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
E +HS + +I + DE E LFN E I KA+WAL++
Sbjct: 158 IAIENIHSEMYSKLIETYIRDETERNTLFNAVDEFEFIKKKADWALRWI----------- 206
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
D F + L F V EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 207 -SDKKASFAERLIAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDF 264
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ ++++ + QQ+ ++ +A +E + E +P +G+N QY++
Sbjct: 265 ACLLYSKLQKKL-------TQQRIYDIIKDAVAIEQEFLTEALPVDMIGMNCRLMSQYIE 317
Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
F+A+ ++G + L+K ++NPF +M E I + + NFFE RV+EYQ+ +
Sbjct: 318 FVADHLLVELGCDKLYK-SKNPFDFM-ENISIDGKTNFFEKRVSEYQRPGVM 367
>gi|73979723|ref|XP_856346.1| PREDICTED: similar to Ribonucleoside-diphosphate reductase M2 chain
(Ribonucleotide reductase small chain) isoform 3 [Canis
familiaris]
Length = 381
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 87/337 (25%), Positives = 147/337 (43%), Gaps = 41/337 (12%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ +++ +L + P++Y W+ Y A + W EV + D+ W+S L
Sbjct: 70 PSAEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWES---LKP 126
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+ER I L FFA+S+ +V N+V + + E R + Q E +HS + +I
Sbjct: 127 EERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLID 186
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LFN +P + KA+WAL++ + + V +
Sbjct: 187 TYIKDSKEREFLFNAIETMPCVKKKADWALRWIG-------------DKEATYGERVVAF 233
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 234 AAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV------- 286
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
K +Q+ + ++ A +E + E +P +G+N +QY++F+
Sbjct: 287 HKPSEQRVKEIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVF------------- 333
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 334 -RVENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 368
>gi|38229183|ref|NP_938276.1| 20L [Yaba monkey tumor virus]
gi|38000454|gb|AAR07377.1| 20L [Yaba monkey tumor virus]
Length = 325
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 88/337 (26%), Positives = 154/337 (45%), Gaps = 28/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
++V + +L + + P+ Y W Y A + W EV + D W L++
Sbjct: 1 MDVVSEPILRQTTGRYVVFPIVYKDIWMMYKKAVASFWTVEEVDLSKDFPDW---LKLSE 57
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+E+ IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I
Sbjct: 58 NEKKFIKHILAFFAASDGIVNENLAERFYSEVQVSEARCFYGFQIAMENIHSEMYSLLID 117
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ LD E LFN + + KANWA ++ ++ + + +
Sbjct: 118 TYILDSKEKNYLFNAIENMNCVKQKANWARKWIES-------------KNSTYGERLIAF 164
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I + + M G+ + I RDE LH +F + +
Sbjct: 165 AAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACMMFKHLSN------ 218
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+ R ++ EA +E + E MP +G+N +QY++F+A+R ++G + +
Sbjct: 219 -PPLENVIRDIVIEAVDIEKNFLTEAMPVKLIGMNCDLMKQYIEFVADRLLLELGCKKYY 277
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++NPF +M E I L+ + NFFE RV+EYQ+ + +
Sbjct: 278 -CSKNPFDFM-ENISLEGKTNFFEKRVSEYQKMSVMS 312
>gi|297157411|gb|ADI07123.1| ribonucleoside-diphosphate reductase [Streptomyces bingchenggensis
BCW-1]
Length = 340
Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats.
Identities = 105/325 (32%), Positives = 178/325 (54%), Gaps = 11/325 (3%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +++Y A N W EV + D+A L+ E+ +I R + FFA+
Sbjct: 19 TLRPMRYPDFYDRYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHLIGRLVAFFATG 75
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 76 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 135
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA + ++ ++ TKD + FL +L F EG++FY FA +
Sbjct: 136 ENIPSIREKAEFCFRWIDSVDKID-RLETKDERRRFLLNLICFAACIEGLFFYGAFAYVY 194
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H+NF V++ ++ E P L+ E QQ+ ML EA
Sbjct: 195 WFRSRGLLHGLATGTNWVFRDETMHMNFAFQVVDTVREEEPELFDDELQQQVTDMLREAV 254
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + +G G+N S QY++ +A++R ++G P++ +ENPF +M E+ ++
Sbjct: 255 EAELQFARDLCGEGLPGMNTESMRQYLECVADQRLARLGFAPVYG-SENPFSFM-ELQNV 312
Query: 330 KKEKNFFETRVTEYQQG--AELKWD 352
++ NFFE R + YQ + +D
Sbjct: 313 QELTNFFERRASAYQVAVEGSVSFD 337
>gi|332519182|ref|ZP_08395649.1| Ribonucleoside-diphosphate reductase [Lacinutrix algicola 5H-3-7-4]
gi|332045030|gb|EGI81223.1| Ribonucleoside-diphosphate reductase [Lacinutrix algicola 5H-3-7-4]
Length = 327
Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats.
Identities = 96/332 (28%), Positives = 156/332 (46%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D + P+++ WE Y + + W E+ + DL W S LTDDER
Sbjct: 6 EPILQENKDRFVIFPIQHHDLWEWYKKSEASMWTAEEIDLHQDLTDWSS--KLTDDERYF 63
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D
Sbjct: 64 IKHVLAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E LFN P+I KA WAL++ ++ F + L F V EG
Sbjct: 124 EKEKAMLFNAIETFPAIKKKAEWALKWIES--------------PSFAERLIAFAAV-EG 168
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE +H +F + + K +
Sbjct: 169 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLHEHHL------INKVPK 222
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ R +L +A +E + E++P +G+N+ QY++F+ + +G E + T N
Sbjct: 223 ERIREILVDALNIEREFITESLPVSLIGMNSKLMSQYLEFVTDGLLQDLGCEKEYG-TAN 281
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M +I L+ + NFFE RV+EYQ+ L
Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVSEYQKAGVLN 312
>gi|296536499|ref|ZP_06898590.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas
cervicalis ATCC 49957]
gi|296263178|gb|EFH09712.1| ribonucleotide-diphosphate reductase subunit beta [Roseomonas
cervicalis ATCC 49957]
Length = 343
Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats.
Identities = 85/331 (25%), Positives = 155/331 (46%), Gaps = 20/331 (6%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L A P +Y WA++ +++ HW+P EVPM DD+ W+ LT+ ER ++
Sbjct: 12 LLTANP---VYKPFRYPWAYDAWMTQQRVHWLPEEVPMADDVKDWQK--NLTESERNLLT 66
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
+ FF ++ V N + + E L + E +H + +++ ++G+ E
Sbjct: 67 QIFRFFTQADVEVNNCYMKHYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPET 126
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E + + + + K ++ + + + E + L F EG+ +
Sbjct: 127 E-YQAFLKYKEMKDKYDYMQSF------------SVENKTEIAKTLAAFGAFTEGLQLFA 173
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
FA +++ R NKM G+ + + +RDE+LH I + ENP +WT++ +
Sbjct: 174 SFAILMNFPRFNKMKGMGQIVSWSVRDETLHCLSVIRLFRTFIQENPEIWTEQLKADLVE 233
Query: 264 MLHEATLLEIAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
+ E A+ G G+ +QY++FIA+RR Q+GLEP + +NP PW
Sbjct: 234 ICTTIVEHEDAFIDLAFELGGVQGMEPEDVKQYIRFIADRRLQQLGLEPHYGTEKNPLPW 293
Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
+ E+++ + NFFE R TEY + + W+
Sbjct: 294 LDEILNAVEHMNFFEGRATEYSKASTAGTWE 324
>gi|114327552|ref|YP_744709.1| ribonucleotide-diphosphate reductase subunit beta [Granulibacter
bethesdensis CGDNIH1]
gi|114315726|gb|ABI61786.1| ribonucleoside-diphosphate reductase beta chain [Granulibacter
bethesdensis CGDNIH1]
Length = 339
Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats.
Identities = 92/354 (25%), Positives = 164/354 (46%), Gaps = 21/354 (5%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
M + T E+ V V +L P +Y WA+E +L HW+P EVP
Sbjct: 1 MTDETIQGAAPQAEQDVPVR-FDLLTENP---VYKPFRYPWAYEAWLVQQQVHWLPEEVP 56
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ DD+ W L + E+ ++ + FF S+ V N + R E L
Sbjct: 57 LADDVKDWH--RNLNEVEQHLVTQIFRFFTQSDVEVNNCYMKHYSRVFKPTEVLMMLSAF 114
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+ E +H + +++ ++G+ E E ++ + + + K ++ + + D
Sbjct: 115 SNIETIHIAAYSHLLDTIGMPEVE-YSAFLKYKEMKDKYDYMHSF------------SVD 161
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ +E + L F EG+ + FA +L+ R K+ G+ + + +RDE+LH I
Sbjct: 162 SKREIAKTLAAFGAFTEGLQLFASFAILLNFPRFGKLKGMGQIVSWSVRDETLHCLSIIK 221
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
+ + EN +WT++ +Q+ R + E A+ G GL+A + Y+++I
Sbjct: 222 LFHVFIDENREIWTEDLRQEIRQICATIVEHEDAFIDLAFELGSVEGLDAAQVKSYIRYI 281
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKWD 352
A+RR Q+GLEPLF NP PW+ ++++ + NFFE R TEY + + W+
Sbjct: 282 ADRRLIQLGLEPLFHVERNPLPWIDDMLNAVEHANFFENRATEYSRASTVGTWE 335
>gi|319953269|ref|YP_004164536.1| ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM
14237]
gi|319421929|gb|ADV49038.1| Ribonucleoside-diphosphate reductase [Cellulophaga algicola DSM
14237]
Length = 326
Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats.
Identities = 91/334 (27%), Positives = 157/334 (47%), Gaps = 28/334 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D + P+++ WE Y W E+ + +D W N L DDER
Sbjct: 5 EPILQENKDRFVIFPIQHNDLWEWYKKQEACIWTAEEIDLSEDANDWN--NKLNDDERYF 62
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E LF P+I KA+WAL++ + F + L F V EG
Sbjct: 123 EKEKTVLFQAIENFPAIKKKADWALKWIDS--------------PSFAERLIAFAAV-EG 167
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE +H +F + + N H+ + +
Sbjct: 168 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLH------NKHIINQVPK 221
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ +L +A +E + E++P +G+N+ QY++F+ +R ++ + ++ + N
Sbjct: 222 ERITEILVDALNIEREFITESLPASLIGMNSKLMTQYLEFVTDRLLVELECDKVYN-STN 280
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
PF +M +I ++ + NFFE RV+EYQ+ L D
Sbjct: 281 PFDFMD-MIGMEGKTNFFEKRVSEYQKAGVLNSD 313
>gi|312075738|ref|XP_003140550.1| ribonucleotide reductase M2 B [Loa loa]
gi|307764288|gb|EFO23522.1| ribonucleotide reductase M2 B [Loa loa]
Length = 350
Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats.
Identities = 89/336 (26%), Positives = 150/336 (44%), Gaps = 37/336 (11%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
R + + +L + + P+K+ W+ Y A + W EV + D W+
Sbjct: 38 TSRCESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDWE---N 94
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L D ER I R L FFA+S+ +V N+V + + PE R + Q E VHS
Sbjct: 95 LNDGERHFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENVHSEM--- 151
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
LFN E + KA+WAL + + +P + + +
Sbjct: 152 ---------SLLFNAIYEFEFVKKKADWALCWIADIKAP-------------YAERLIAF 189
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I L + M G+ + I RDE LH +F + ++
Sbjct: 190 AAVEGIFFSGSFAAIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYT-------YIK 242
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
K +++ ++ EA +E Y E +P +G+N QY++++A+ ++ ++
Sbjct: 243 NKPSEERIYQIIREAVDIEKEYLTEALPVDLIGINCKLMCQYIEYVADHLLTELHCAKMY 302
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
Y++NPF +M E I ++ + NFFE RV+EYQ+ L
Sbjct: 303 -YSDNPFDFM-ERISIEAKTNFFEKRVSEYQKAGVL 336
>gi|12085003|ref|NP_073405.1| 20L protein [Yaba-like disease virus]
gi|56404692|sp|Q9DHU2|RIR2_YLDV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|12056179|emb|CAC21258.1| 20L protein [Yaba-like disease virus]
Length = 325
Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats.
Identities = 89/337 (26%), Positives = 154/337 (45%), Gaps = 28/337 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+N + +L + + P+ Y W+ Y A + W EV + D + W L+D
Sbjct: 1 MNTSCEPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDW---LKLSD 57
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+E+ IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I
Sbjct: 58 NEKNFIKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLID 117
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ LD E LFN + + KANWA ++ ++ + V +
Sbjct: 118 TYILDSKEKNYLFNAIENMNCVKQKANWAKKWIES-------------KNRTYGERLVAF 164
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I + + M G+ + I RDE LH +F + +
Sbjct: 165 AAVEGIFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACIMFKHLLN------ 218
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
R ++ EA +E + E +P +G+N +QY++F+A+R ++G + +
Sbjct: 219 -PPLNSVVRDIIIEAVNIEKNFLTEAIPVKLIGMNCDLMKQYIEFVADRLLLELGCDKYY 277
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++NPF +M E I L+ + NFFE RV+EYQ+ + +
Sbjct: 278 -CSKNPFDFM-ENISLEGKTNFFEKRVSEYQKMSVMS 312
>gi|303272255|ref|XP_003055489.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463463|gb|EEH60741.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 322
Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats.
Identities = 91/329 (27%), Positives = 153/329 (46%), Gaps = 29/329 (8%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
ML D L P+K+ W+ Y A + W E+ + DL W LT+ E+ I
Sbjct: 1 MLQDNEDRFSLFPVKHVEVWKMYKQAVASFWNAEEIDLSTDLRDW---GNLTESEQHFIS 57
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--- 140
L FFA+S+ +V N+ L + + PE R + Q E +HS T+ ++ +
Sbjct: 58 HVLAFFAASDGIVLENLGLRFLKDVQMPEARAFYGFQLAMENIHSETYGLLLETYIKDSV 117
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
L VP++ KA WAL++ Q+ + F + L + EG++
Sbjct: 118 QRKHLMRAIHTVPTVGRKAQWALRWIQS-------------SECFAERLIA-FACVEGIF 163
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
F F I L + M G+ + I RDE LH +F + + +K ++
Sbjct: 164 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSMLKHPLEP-------ER 216
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
+ ++ +A +E + + + VG+NA +Y++F+A+R Q+G++ ++ T NPF
Sbjct: 217 LQEIVKDAVEIEKEFVCDALSCALVGMNADLMSEYIEFVADRLLVQLGVDKVWN-TPNPF 275
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
WM E I L+ + NFFE RV EYQ+ +
Sbjct: 276 DWM-ESISLQGKTNFFERRVGEYQRNGVM 303
>gi|302554045|ref|ZP_07306387.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
viridochromogenes DSM 40736]
gi|302471663|gb|EFL34756.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
viridochromogenes DSM 40736]
Length = 341
Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats.
Identities = 103/323 (31%), Positives = 176/323 (54%), Gaps = 9/323 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+
Sbjct: 20 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPAEQHLIGRLVAFFATG 76
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 77 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAV 136
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA++ ++ ++ T+ + FL +L F EG++FY FA +
Sbjct: 137 ENIPSIREKASFCFKWMDSVEKLD-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVY 195
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H++F DV++ ++ E P L+ + +Q+ ML EA
Sbjct: 196 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDQLRQEVTDMLREAV 255
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ +
Sbjct: 256 EAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQGV 313
Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
++ NFFE R + YQ E D
Sbjct: 314 QELTNFFERRPSAYQVAVEGTVD 336
>gi|120556760|ref|YP_961111.1| ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8]
gi|120326609|gb|ABM20924.1| Ribonucleoside-diphosphate reductase [Marinobacter aquaeolei VT8]
Length = 352
Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats.
Identities = 137/340 (40%), Positives = 193/340 (56%), Gaps = 5/340 (1%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
G VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M D+ + +
Sbjct: 18 GGPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHHR 77
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
LT E+ + + L + +S+ L NI LA+ +S PE + Y RQ +EEA+H+ T+
Sbjct: 78 --LTPAEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTY 135
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
Q+ I +L LD+ E++N YR VP I K A + D Q+F+
Sbjct: 136 QHCIETLNLDQSEIYNRYRVVPEINGKIQLANRRLDAAMRSDMNLRNPDELQDFVMSYLF 195
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
F VFEG WFY GF+ I +L R M G EQ QYI+RDE++H +FG+ V+NQI E
Sbjct: 196 FAAVFEGCWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQILEEEKI 255
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+ R M E+ E+AYA+ + +G +A + +F+ANRR +GLE
Sbjct: 256 TLDP---KAVREMWDESEAAEMAYANYVLRDPILGYSAEYHSEQFRFVANRRARTVGLEE 312
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
F +N PW+ E L+KEKNFFETRV EYQ GA+L+W
Sbjct: 313 PFPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352
>gi|239982206|ref|ZP_04704730.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
albus J1074]
gi|291454052|ref|ZP_06593442.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces
albus J1074]
gi|291357001|gb|EFE83903.1| ribonucleotide-diphosphate reductase subunit small [Streptomyces
albus J1074]
Length = 350
Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats.
Identities = 100/325 (30%), Positives = 178/325 (54%), Gaps = 11/325 (3%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+
Sbjct: 29 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHLIGRLVAFFATG 85
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 86 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPADRADAFAAV 145
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA + ++ ++ ++ ++FL +L F EG++FY FA +
Sbjct: 146 ENIPSIREKAEFCFRWMDSVDKLD-QLESQADRRKFLLNLICFAACIEGLFFYGAFAYVY 204
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H++F DV++ ++ E P L+ + Q++ ML EA
Sbjct: 205 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLQEQVVAMLKEAV 264
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + G G+N S +Y++ +A++R ++G P++ ++NPF +M E+ +
Sbjct: 265 EAELQFARDLCGDGLPGMNTESMREYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGV 322
Query: 330 KKEKNFFETRVTEYQQG--AELKWD 352
++ NFFE RV+ YQ + +D
Sbjct: 323 QELTNFFERRVSAYQVAVEGTVSFD 347
>gi|325286576|ref|YP_004262366.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489]
gi|324322030|gb|ADY29495.1| Ribonucleoside-diphosphate reductase [Cellulophaga lytica DSM 7489]
Length = 328
Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats.
Identities = 91/332 (27%), Positives = 156/332 (46%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D + P+K+ W+ Y + W E+ + DL WK N L DDER
Sbjct: 6 EPILEKNEDRFVIFPIKHNDLWDWYKKCEASFWTAEEIDLHADLDDWK--NKLNDDERYF 63
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D
Sbjct: 64 IKHILAFFAASDGIVNENLAENFVSEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 123
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E LF+ P+I KA+WAL++ ++ F + L F V EG
Sbjct: 124 EKEKDILFHALENFPAIRKKADWALKWIES--------------PSFAERLIAFAAV-EG 168
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE +H ++ + + N K +
Sbjct: 169 IFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDYAVHLHNHHL------INKVPK 222
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ +L +A +E + E++P +G+N+ QY++F+ +R ++ + ++ + N
Sbjct: 223 ERITEILVDALDIEREFITESLPVSLIGMNSKLMTQYLEFVTDRLLVELNCDKVYN-STN 281
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M +I L+ + NFFE RV EYQ+
Sbjct: 282 PFDFMD-MISLQGKTNFFEKRVAEYQKSGVAN 312
>gi|21492474|ref|NP_659593.1| Ribonucleotide reductase, small subunit [Sheeppox virus]
Length = 321
Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats.
Identities = 92/332 (27%), Positives = 148/332 (44%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L S + P+ Y W Y A + W EV + DL+ WK L ++E+
Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLSDWK---KLNNEEQYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I +
Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN + I K+ WA ++ + F + L F V EG
Sbjct: 119 TKEKEYLFNAIETMDFIKKKSEWARKWI------------SNKKASFGERLIAFAAV-EG 165
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + +K
Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLK-------YPPSN 218
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ ++ EA +E + +P +G+N QY++FIA+R ++G + +F + N
Sbjct: 219 EIITIIIKEAVSIEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVF-MSIN 277
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV+EYQ+ +
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308
>gi|29829569|ref|NP_824203.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
avermitilis MA-4680]
gi|29606677|dbj|BAC70738.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptomyces avermitilis MA-4680]
Length = 338
Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats.
Identities = 105/323 (32%), Positives = 173/323 (53%), Gaps = 9/323 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D+A LT E+ +I R + FFA+
Sbjct: 17 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTPAEQHLIGRLVAFFATG 73
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 74 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAV 133
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA + ++ + TK + FL +L F EG++FY FA +
Sbjct: 134 ENIPSIREKAEFCFKWINEVEKLD-RLETKADRRRFLLNLICFAACIEGLFFYGAFAYVY 192
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H++F +V++ ++ E P L+ E QQ+ ML EA
Sbjct: 193 WFRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDDELQQQVTDMLREAV 252
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ + + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ +
Sbjct: 253 EAELQFGRDLCGDGLPGMNTESMRQYLECVADQRLQRLGFAPVYG-SENPFSFM-ELQGV 310
Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
++ NFFE R + YQ E D
Sbjct: 311 QELTNFFERRASAYQVAVEGTVD 333
>gi|323452425|gb|EGB08299.1| hypothetical protein AURANDRAFT_59025 [Aureococcus anophagefferens]
Length = 319
Score = 245 bits (624), Expect = 9e-63, Method: Composition-based stats.
Identities = 86/326 (26%), Positives = 148/326 (45%), Gaps = 27/326 (8%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
ML S L P+++ W+ Y A + W EV + D+ W + L D ER IK
Sbjct: 1 MLAVNSLRFVLFPIEHDDIWQMYKQAEASFWTAEEVDLCHDVQHWDT--KLNDKERHFIK 58
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG---L 140
L FFA+S+ +V N+ + PE R + Q E +HS + +I +
Sbjct: 59 HVLAFFAASDGIVNENLAQNFATEVQWPEARCFYGFQIAIENIHSEVYSLLIDTYIRDAQ 118
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ E +P + KA WAL++ D D + + + EG++
Sbjct: 119 KKHECLTAIDTMPCVAEKAQWALRW-------------CDPDHASFTERLLAFAAVEGIF 165
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
F F + L + M G++ + I RDE LH +F + ++++ + +
Sbjct: 166 FSGSFCAVFWLKKRGLMPGLSFSNELIARDEGLHCDFACLLYSKLRKKLSDVQ------- 218
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
+++ A +E ++ +P +G+N+ S +Y++F A+R ++G L+ T NPF
Sbjct: 219 VASIVGAAVDIEKSFVVSALPVELIGMNSKSMCKYIEFCADRLLLELGYSTLYGAT-NPF 277
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
WM E+I L+ + NFFE RV EY +
Sbjct: 278 DWM-ELISLQGKTNFFEKRVGEYAKA 302
>gi|281204152|gb|EFA78348.1| ribonucleotide reductase-related protein [Polysphondylium pallidum
PN500]
Length = 323
Score = 245 bits (624), Expect = 9e-63, Method: Composition-based stats.
Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 28/333 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
+ ++ +L D L P+K+ W+ Y A + W E+ + DL W+ + L D+E
Sbjct: 2 MQEEPILKENKDRFVLFPIKHQDVWKFYKKAEASFWTAEEIDLAPDLRDWQ--DKLNDNE 59
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N+ + PE R + Q E +HS T+ +I +
Sbjct: 60 RYFISNVLAFFAASDGIVNENLATRFMSEVQIPEARCFYGFQIAMENIHSETYSLLIDTY 119
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
+ E LFN +P + KANWAL++ +S + V +
Sbjct: 120 IQNPAEKTKLFNAIETIPCVQKKANWALKWISNSTS--------------FAERLVAFAA 165
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F F I L + N M G+ ++I RDE LH F + +++ +
Sbjct: 166 VEGIFFSGSFCSIFWLKKRNLMSGLCSSNEFISRDEGLHCQFACLLYSKLVNKLDA---- 221
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+ +++ +A E + +++P +G+N +Y++F+A+ +G + ++
Sbjct: 222 ---KTIESIIRDAVDCEKEFITQSLPVDLIGMNNRLMSEYIEFVADHLIVALGYKKIYN- 277
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
T NPF WM E+I + NFFE R T Y
Sbjct: 278 TANPFDWM-ELISIDTRTNFFEHRNTSYTIPGV 309
>gi|157939640|ref|YP_001497012.1| ribonucleotide reductase [Tanapox virus]
gi|146746356|gb|ABQ43492.1| ribonucleotide reductase [Tanapox virus]
gi|146746512|gb|ABQ43647.1| ribonucleotide reductase [Tanapox virus]
Length = 325
Score = 245 bits (624), Expect = 9e-63, Method: Composition-based stats.
Identities = 88/332 (26%), Positives = 151/332 (45%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P+ Y W+ Y A + W EV + D + W L+D+E+
Sbjct: 6 EPILKPTLNKYVVFPIVYEDIWKMYKKAVASFWTVEEVDLSKDFSDW---LKLSDNEKNF 62
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I + LD
Sbjct: 63 IKHILAFFAASDGIVNENLAERFYSEVQISEARCFYGFQIAMENIHSEMYSLLIDTYILD 122
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN + + KANWA ++ ++ + V + EG
Sbjct: 123 SKEKNYLFNAIENMNCVKQKANWAKKWIES-------------KNRTYGERLVAFAAVEG 169
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I + + M G+ + I RDE LH +F + +
Sbjct: 170 IFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACIMFKHLLN-------PPLN 222
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
R ++ EA +E + E +P +G+N +QY++F+A+R ++G + ++N
Sbjct: 223 SVVRDIIIEAVNIEKNFLTEAIPVKLIGMNCDLMKQYIEFVADRLLLELGCNKYY-CSKN 281
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV+EYQ+ + +
Sbjct: 282 PFDFM-ENISLEGKTNFFEKRVSEYQKMSVMS 312
>gi|268575178|ref|XP_002642568.1| C. briggsae CBR-RNR-2 protein [Caenorhabditis briggsae]
gi|187023588|emb|CAP37241.1| CBR-RNR-2 protein [Caenorhabditis briggsae AF16]
Length = 365
Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 92/340 (27%), Positives = 156/340 (45%), Gaps = 28/340 (8%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ D+ +L + + PL++ W+ Y A + W EV + D+ W+
Sbjct: 37 PKGNALDADEPLLQDLDNRFVIFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWE--- 93
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
+ DE+ I R L FFA+S+ +V N+ + E R + Q E +HS +
Sbjct: 94 KMNGDEQYFISRVLAFFAASDGIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYS 153
Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
+I + DE E LFN E I KA+WAL++ D F + L
Sbjct: 154 KLIETYIRDEKERMKLFNAIFEFEFIKKKADWALRWI------------SDTKASFAERL 201
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
F V EG++F FA I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 202 IAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYSMLQNKL 260
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
Q++ ++ +A +E + E +P +G+N QY++F+A+ ++G
Sbjct: 261 S-------QERIFEIIRDAVAIEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLQELGC 313
Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ L+ +NPF +M E I + + NFFE RV+EYQ+ +
Sbjct: 314 DKLYNV-KNPFDFM-ENISIDGKTNFFEKRVSEYQRPGVM 351
>gi|326916502|ref|XP_003204546.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Meleagris gallopavo]
Length = 339
Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 90/331 (27%), Positives = 152/331 (45%), Gaps = 29/331 (8%)
Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
+L + P++Y W Y A + W EV + DL W+S L +E+ I
Sbjct: 22 PLLRENPGGSS-FPIQYHDIWRMYKKAEASFWTAEEVDLSKDLQHWES---LKPEEKYFI 77
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
L FFA+S+ +V N+V + + E R + Q E +HS + +I + D
Sbjct: 78 SHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDS 137
Query: 143 GE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
E LFN +P + KA+WA+++ + + V + EG+
Sbjct: 138 KEREFLFNAIETLPCVKKKADWAIRWIG-------------DKKATYGERVVAFAAVEGI 184
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
+F FA I L + M G+ + I RDE LH +F + + K ++
Sbjct: 185 FFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLIR-------KPSEE 237
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
+ + ++ A L+E + E +P +G+N +QY++F+A+R ++G ++K ENP
Sbjct: 238 RVKEIIMNAVLIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFRKIYKV-ENP 296
Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
F +M E I L+ + NFFE RV EYQ+ +
Sbjct: 297 FDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 326
>gi|58040422|ref|YP_192386.1| ribonucleotide-diphosphate reductase subunit beta [Gluconobacter
oxydans 621H]
gi|58002836|gb|AAW61730.1| Ribonucleoside-diphosphate reductase beta chain [Gluconobacter
oxydans 621H]
Length = 339
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 81/322 (25%), Positives = 155/322 (48%), Gaps = 17/322 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA++ +L+ HW+P EVP+ DD+ W LT+ ER ++ + FF S
Sbjct: 24 VYKPFRYPWAYDAWLTQQRVHWLPEEVPLADDVKDWH--RTLTEAERHLVTQIFRFFTQS 81
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E L + E +H + +++ ++G+ E E ++ + +
Sbjct: 82 DVEVNSAYMKYYSQVFKPTEVLMMLSAFSNIETIHIAAYSHLLDTIGMPETE-YSAFLKY 140
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ K ++ + D +E + + F EG+ + FA +L+
Sbjct: 141 KEMKDKYDFMQSF------------NIDNKREIAKTMAAFGAFMEGLQLFASFAILLNFP 188
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R NK+ G+ + + +RDE+LH I + EN +WT EF+++ + E
Sbjct: 189 RFNKLKGMGQIVSWSVRDETLHCLSMIRLFRTFVRENSEIWTPEFREELTQICRTTVEHE 248
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
A+ G G+++ ++Y++FIA+RR Q+GL+P++ NP PW+ ++++ +
Sbjct: 249 DAFIDLCFEMGPVEGMSSEDVKRYIRFIADRRLTQLGLDPVYGQESNPLPWIDDMLNAVE 308
Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
NFFE R TEY + + W+
Sbjct: 309 HANFFENRSTEYSRASTSGTWE 330
>gi|291412327|ref|XP_002722439.1| PREDICTED: ribonucleotide reductase M2 polypeptide [Oryctolagus
cuniculus]
Length = 400
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 88/328 (26%), Positives = 150/328 (45%), Gaps = 28/328 (8%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+L ++ W + + W EV + D+ W+ L ++ER I
Sbjct: 85 RENPCRFSILTIESYGIWTRNKKGEASFWTAEEVDLSKDIQHWE---ALKEEERYFISHV 141
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE- 144
L FFA+S+ +V N+V + + E R + Q E +HS + +I + D E
Sbjct: 142 LAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKER 201
Query: 145 --LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
LFN +P + KA+WAL++ D + + + + F V EG++F
Sbjct: 202 EFLFNAIETMPCVKKKADWALRWI------------GDKEATYGERVVAFAAV-EGIFFS 248
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
FA I L + M G+ + I RDE LH +F + + K +Q+ +
Sbjct: 249 GSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV-------HKPSEQRVQ 301
Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
++ A +E + E +P +G+N +QY++F+A+R ++G +F+ ENPF +
Sbjct: 302 EIIVNAVRIEQEFLTEALPVKLIGMNCALMKQYIEFVADRLLLELGFSKVFRV-ENPFDF 360
Query: 323 MSEVIDLKKEKNFFETRVTEYQQGAELK 350
M E I L+ + NFFE RV EYQ+ +
Sbjct: 361 M-ENISLEGKTNFFEKRVGEYQRMGVMS 387
>gi|108763495|ref|YP_633213.1| ribonucleoside-diphosphate reductase subunit beta [Myxococcus
xanthus DK 1622]
gi|108467375|gb|ABF92560.1| ribonucleoside-diphosphate reductase, beta subunit [Myxococcus
xanthus DK 1622]
Length = 349
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 105/340 (30%), Positives = 178/340 (52%), Gaps = 9/340 (2%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++ + + +LN ++ L P+ Y +E Y +A N W EV DL +
Sbjct: 1 METPRRSARSTEAMLLNPGLNL-TLRPMAYPQFFEMYRNAIKNTWTVEEVDFSTDLVDLR 59
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
S +TD ER +I R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H
Sbjct: 60 S--KMTDAERHLIHRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQ 117
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
+ ++ + D E F +PSI KA + +++ ++ T TK ++FL
Sbjct: 118 FYLTLLDTYVPDPAERAMAFAAVDNIPSIQRKAQFCMKWMDSIQGLD-TLQTKAHRRQFL 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+L F EG++F+ FA + L + G+A ++ RDES H+ F + I +
Sbjct: 177 LNLICFAGCIEGLFFFAAFAYVYFLRSKGLLNGLAAGTNWVFRDESAHMAFAFESIQVAR 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+ + ++ ML EA E +A + + G +GL+ Y++++A++R
Sbjct: 237 KEEPDLFDAQMERDVVAMLREAVECETQFAQDLLSGGVMGLSVQDMRGYLEYVADQRLQM 296
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
+G+ P+F T+NP +M + D+++ NFFE RV+ YQ
Sbjct: 297 LGMTPVFG-TKNPLHFMD-LQDVQELTNFFERRVSSYQVA 334
>gi|308490981|ref|XP_003107682.1| CRE-RNR-2 protein [Caenorhabditis remanei]
gi|308250551|gb|EFO94503.1| CRE-RNR-2 protein [Caenorhabditis remanei]
Length = 377
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 90/333 (27%), Positives = 155/333 (46%), Gaps = 28/333 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L + + PL++ W+ Y A + W EV + D+ W+ + DE+
Sbjct: 57 NEPLLQDLDNRFVIFPLRHHEIWQFYKKAVASFWTVEEVDLGKDMNDWE---KMNGDEQY 113
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I R L FFA+S+ +V N+ + E R + Q E +HS + +I +
Sbjct: 114 FISRVLAFFAASDGIVNENLCERFSNEVKVSEARFFYGFQIAIENIHSEMYSKLIETYIR 173
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
DE E LFN E I KA+WA+++ D F + L F V E
Sbjct: 174 DEKERLTLFNAIFEFEFIKKKADWAMKWI------------SDKKASFAERLIAFAAV-E 220
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G+ + I RDE LH +F + + ++ +
Sbjct: 221 GIFFSGSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDFACLLYSMLQNKL-------T 273
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
Q++ ++ +A +E + E +P +G+N QY++F+A+ ++G + L+ +
Sbjct: 274 QERIFEIIRDAVCIEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLAELGCDKLYNV-K 332
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M E I + + NFFE RV+EYQ+ +
Sbjct: 333 NPFDFM-ENISIDGKTNFFEKRVSEYQRPGVMS 364
>gi|290957506|ref|YP_003488688.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
scabiei 87.22]
gi|260647032|emb|CBG70131.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
scabiei 87.22]
Length = 355
Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats.
Identities = 103/337 (30%), Positives = 182/337 (54%), Gaps = 10/337 (2%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
+ D+ +L+ ++ L P++Y +E+Y A N W EV + D+A L++ E
Sbjct: 21 MTDQNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSEGE 76
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
+ MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ +
Sbjct: 77 QHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTY 136
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D + F +PSI KA + ++ ++ D + FL +L F
Sbjct: 137 LPDPADRVAAFAAVENIPSIREKAEFCFKWMDSVEKLDRLESQAD-RRRFLLNLICFAAC 195
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++FY FA + + G+A ++ RDE++H++F +V++ ++ E P L+ +
Sbjct: 196 IEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMSFAFEVVDTVRKEEPELFDE 255
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+Q+ ML EA E+ + + G G+N S QY++ +A++R ++G P++
Sbjct: 256 LLRQQVTDMLKEAVEAELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG- 314
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
++NPF +M E+ +++ NFFE R + YQ E D
Sbjct: 315 SQNPFSFM-ELQGVQELTNFFERRPSAYQVAVEGTVD 350
>gi|148912897|ref|YP_001293211.1| hypothetical protein GTPV_gp017 [Goatpox virus Pellor]
Length = 321
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 93/332 (28%), Positives = 149/332 (44%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L S + P+ Y W Y A + W EV + DLA WK L ++E+
Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLNNEEQYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I +
Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAIENIHSEMYSLLIDTYISS 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN + I K+ WA ++ + F + L F V EG
Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI------------SNKKASFGERLIAFAAV-EG 165
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + +K
Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLK-------YPPSN 218
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ +++EA +E + +P +G+N QY++FIA+R ++G + +F + N
Sbjct: 219 DIIKIIINEAVSIEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVF-MSTN 277
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV+EYQ+ +
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308
>gi|311696539|gb|ADP99412.1| ribonucleotide-diphosphate reductase beta subunit [marine bacterium
HP15]
Length = 352
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 138/349 (39%), Positives = 194/349 (55%), Gaps = 5/349 (1%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
+ VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M
Sbjct: 9 KTESRAAHPGAPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMA 68
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D+ + + LT E+ + + L + +S+ L NI LA+ +S PE + Y RQ +
Sbjct: 69 QDVHDYHHR--LTAPEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVY 126
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
EEA+H+ +Q+ I +L LD+ E++N YR VP+I K A + P KD
Sbjct: 127 EEAMHTWAYQHCIETLNLDQSEIYNRYRVVPAINGKIQIANRRLDAAMRPDMNLRNKDDL 186
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
QEF+ F VFEG WFY GF+ I +L R M G EQ QYI+RDE++H +FG+ V+
Sbjct: 187 QEFIMSYLFFAAVFEGTWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVV 246
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
NQI E + + R M E+ E AYA + +G +A + +F+ANR
Sbjct: 247 NQIVEEENITFDP---KAVREMWDESEAAEKAYADYILRDPILGYSAEYHSEQFRFVANR 303
Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
R +GLE F +N PW+ E L+KEKNFFETRV EYQ GA+L+W
Sbjct: 304 RARTVGLEEPFPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352
>gi|254384639|ref|ZP_04999978.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp.
Mg1]
gi|194343523|gb|EDX24489.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces sp.
Mg1]
Length = 338
Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats.
Identities = 106/338 (31%), Positives = 182/338 (53%), Gaps = 10/338 (2%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ D K +L+ ++ L P++Y +E+Y A N W EV + D+A LT
Sbjct: 3 STDQKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTPA 58
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ +
Sbjct: 59 EQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDT 118
Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
D + F+ E+PSI KA + ++ + T+ + FL +L F
Sbjct: 119 YLPDPDDRAAAFDAVEEIPSIREKAQFCFKWINEVEKLD-RLETQADRRRFLLNLICFAA 177
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
EG++FY FA + + G+A ++ RDE++H+NF +V++ ++ E P L+
Sbjct: 178 CIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFD 237
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
QQ+ ML EA E+ + + G G+N S +Y++ +A++R ++G P++
Sbjct: 238 DALQQQVTDMLKEAVDAELQFGRDLCGDGLPGMNTESMREYLECVADQRLVRLGFAPVYG 297
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
++NPF +M E+ +++ NFFE R + YQ E D
Sbjct: 298 -SQNPFSFM-ELQGVQELTNFFERRPSAYQVAVEGTVD 333
>gi|22595713|gb|AAN02745.1| ribonucleotide reductase small subunit [lumpy skin disease virus]
Length = 321
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 93/332 (28%), Positives = 148/332 (44%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L S + P+ Y W Y A + W EV + DLA WK L ++E+
Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLNNEEQYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I +
Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN + I K+ WA ++ + F + L F V EG
Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI------------SNKKASFGERLIAFAAV-EG 165
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + +K
Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLK-------YPPSN 218
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+++EA +E + +P +G+N QY++FIA+R ++G + +F + N
Sbjct: 219 DIITIIINEAVSIEKEFLTNIIPVKLIGMNCVLMSQYIEFIADRLLLELGCDKVF-MSTN 277
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV+EYQ+ +
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308
>gi|256785295|ref|ZP_05523726.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
lividans TK24]
gi|289769189|ref|ZP_06528567.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
lividans TK24]
gi|289699388|gb|EFD66817.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
lividans TK24]
Length = 343
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 108/342 (31%), Positives = 185/342 (54%), Gaps = 10/342 (2%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E V+ K +L+ ++ L P++Y +E+Y A N W EV + D+A
Sbjct: 4 ETPVHPTTKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAK 59
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L+ E+ +I R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH +
Sbjct: 60 LSPMEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLT 119
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
++ + D + F +PSI KA + ++ ++ S TK + FL +L
Sbjct: 120 LLDTYLPDPEDRAAAFAAVENIPSIREKAEFCFRWMDSVESID-RLETKADRRRFLLNLI 178
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
F EG++FY FA + + G+A ++ RDE++H++F DV++ ++ E P
Sbjct: 179 CFAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEP 238
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
L+ + +++ ML EA E+ +A + G G+N S QY++ +A++R ++G
Sbjct: 239 ELFDDQLREQVTDMLREAVEAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFA 298
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
P++ +ENPF +M E+ +++ NFFE R + YQ E D
Sbjct: 299 PVYG-SENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGTVD 338
>gi|154250961|ref|YP_001411785.1| ribonucleotide-diphosphate reductase subunit beta [Parvibaculum
lavamentivorans DS-1]
gi|154154911|gb|ABS62128.1| Ribonucleoside-diphosphate reductase [Parvibaculum lavamentivorans
DS-1]
Length = 319
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 85/324 (26%), Positives = 155/324 (47%), Gaps = 17/324 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
+ P +Y WA+E +L+ HW+P EVP+ DD+ W LT+ ER ++ + FF
Sbjct: 7 RHVYKPFRYPWAYEAWLTQQRIHWLPEEVPLADDVKDWSK--KLTEGERNLLTQIFRFFV 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
++ V N + R E + L + E VH + +++ ++G+ E E + +
Sbjct: 65 QADVEVNNCYMKHYSRVFKPTEVQMMLAAFSNIETVHISAYSHLLDTIGMPEAE-YEAFL 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + K ++ ++ + + + L VF EG+ + FA +++
Sbjct: 124 KYEQMKTKFDYMQEW------------GVETKADIAKTLAVFGGFTEGVQLFASFAILMN 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
R NKM G+ + + RDE+LH + + ENP +WT+E ++
Sbjct: 172 FPRFNKMKGMGQIVTWSARDETLHTVSAMKLFRTFVDENPEIWTEELRRDIYKACETIIH 231
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E A+ G GL+A + Y+++IA+RR Q+ L+P+++ +NP PWM E+++
Sbjct: 232 HEDAFIDLAFEMGSIEGLSAQEVKNYIRYIADRRLVQLNLQPIYRTEKNPLPWMDEMLNG 291
Query: 330 KKEKNFFETRVTEYQQGAE-LKWD 352
+ NFFE R TEY + + W+
Sbjct: 292 IEHTNFFENRATEYSKASTRGSWE 315
>gi|256391238|ref|YP_003112802.1| ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM
44928]
gi|256357464|gb|ACU70961.1| Ribonucleoside-diphosphate reductase [Catenulispora acidiphila DSM
44928]
Length = 331
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 110/334 (32%), Positives = 184/334 (55%), Gaps = 12/334 (3%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L+ D+ L P++Y +++Y A N W EV + DL + L+ ER ++
Sbjct: 2 LLDPGLDL-TLRPMRYPHFFDRYRDAIKNTWTVEEVDLHSDLTD---LDRLSAAERHLVS 57
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE
Sbjct: 58 RLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDED 117
Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
E F +PSI KA + ++ +L + +++ + FL +L F EG++
Sbjct: 118 ERTEAFAAVENIPSIRRKAEFCFRWIDSLGNLQ-RLESREDRRAFLLNLICFAACIEGLF 176
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY FA + L + G+A ++ RDES+H+ F DV++ ++ E P L+ ++ Q+
Sbjct: 177 FYGAFAYVYFLRSRGLLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDEKMAQQ 236
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
R ML EA E +A + + G GL Y++ +A+RR Q+GLEP++ T NP
Sbjct: 237 VREMLAEAVECETQFAGDLLGGGVSGLPVADMRAYLEHVADRRLEQLGLEPMYG-TANPL 295
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
+M E+ D+++ NFFE RV+ YQ + +D
Sbjct: 296 GFM-ELQDVQELSNFFERRVSAYQVAVGGSVSFD 328
>gi|118500933|gb|ABK97635.1| ribonucleoside diphosphate reductase beta subunit [Allochromatium
vinosum DSM 180]
Length = 280
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 187/280 (66%), Positives = 233/280 (83%)
Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
+D+NQL+P KY WAW+KYL AC NHWMP E+ M DLALWK +GLT+DERL++KRNLGF
Sbjct: 1 ADLNQLVPFKYDWAWQKYLDACANHWMPQEISMNADLALWKDPHGLTEDERLIVKRNLGF 60
Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
F++++SLVANN+VLA+YRH++NPECRQYLLRQAFEEA+H+H +QY++ SLGLDEGE+FNM
Sbjct: 61 FSTADSLVANNLVLAVYRHITNPECRQYLLRQAFEEALHTHAYQYVVESLGLDEGEIFNM 120
Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
YREVP++ KA WAL +TQ L+ P F TGT + DQ+ L +L FYV+FEG++FY GF QI
Sbjct: 121 YREVPAVARKAEWALPFTQHLADPHFQTGTPENDQKLLCELVAFYVIFEGIFFYVGFVQI 180
Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
LS+GR NKM G AEQ+QYI+RDES+H+NFGIDVINQIKIENPHLWT +F+Q+ M+ EA
Sbjct: 181 LSMGRRNKMTGTAEQFQYILRDESMHMNFGIDVINQIKIENPHLWTPDFRQELVGMIREA 240
Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
LE YAH+TMP+G +GLNA E Y+ FIANRRC QIG
Sbjct: 241 VELEARYAHDTMPRGVLGLNAQMFEDYLHFIANRRCAQIG 280
>gi|238061574|ref|ZP_04606283.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC
39149]
gi|237883385|gb|EEP72213.1| ribonucleoside-diphosphate reductase [Micromonospora sp. ATCC
39149]
Length = 344
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 113/345 (32%), Positives = 189/345 (54%), Gaps = 13/345 (3%)
Query: 14 EKRVNVDDKR-MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+D + +L+ D+ L P++Y ++++ A N W EV + DLA
Sbjct: 4 TSEPRLDTRHTLLDPGMDL-TLRPMRYPHFFDRFKDAIKNTWTVEEVDLHSDLAD---LA 59
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L+ ER ++ R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH +
Sbjct: 60 RLSPAERHLVSRLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYL 119
Query: 133 YIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
++ + DE E F +PSI KA + ++ ++ T++ + FL +L
Sbjct: 120 NLLDTYVPDERERFAAFAAIENIPSIRRKAEFCFRWIDSIFEL-RELKTREDRRAFLLNL 178
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
F EG++FY FA + L + G+A ++ RDES+H+ F DV++ ++ E
Sbjct: 179 ICFAACIEGLFFYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTVRHEE 238
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
P L+ E ++ R ML EA E +A + + +G GL+ QY+Q +A+RR Q+G+
Sbjct: 239 PDLFDDELARQVREMLAEAVECEAQFAEDLLEQGVSGLSLDDMRQYLQHVADRRLAQLGI 298
Query: 310 EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
PL+ + NPF +M E+ D+++ NFFE RV+ YQ G + +D
Sbjct: 299 APLYG-SANPFAFM-ELQDVQELSNFFERRVSAYQVGVTGSVTFD 341
>gi|171913278|ref|ZP_02928748.1| ribonucleotide-diphosphate reductase subunit beta [Verrucomicrobium
spinosum DSM 4136]
Length = 361
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 115/329 (34%), Positives = 186/329 (56%), Gaps = 2/329 (0%)
Query: 22 KRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
KR++N R + LLPLKY WA++ Y NHW P ++ MQ D+ W+S + + + ER
Sbjct: 26 KRVINGRQTMTFNLLPLKYQWAYDLYRVMKANHWEPEDIQMQKDVEQWRSVDQVAEVERW 85
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+I +G+F+++E +V +NI + ++ PE + L R A EE +H+ + Y+I+SLG+
Sbjct: 86 IIMMGIGYFSAAEGIVGDNIQHVVRELVTAPELKLVLGRHAHEENIHADSLLYMISSLGI 145
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ E M+ ++P+I K + + + L + + +++FVF EG
Sbjct: 146 NPHECEAMFEDIPTIVKKNAFVTRSSNALRR-DLDLTQIENKRLLAKNIFVFGQCMEGTQ 204
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY F ILSL R K GI ++Y +RDES H+ ++ + ENP +WT EF+++
Sbjct: 205 FYGLFGMILSLYRQGKFPGIGTMFRYTLRDESNHIKVFRNLFMDLIDENPEIWTPEFREE 264
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
++ EA LE + + +P VGL A E Y+ FIA+RR +GL L NP
Sbjct: 265 LVELMKEAVALEKEFIRDCLPVAAVGLTAGEFELYIDFIADRRLASVGLPALTPGIVNPL 324
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
PW++E+ D++KE+NFFE VT+YQ+ + L
Sbjct: 325 PWLAEMQDIRKEQNFFEGTVTDYQKASSL 353
>gi|71083845|ref|YP_266565.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Pelagibacter ubique HTCC1062]
gi|71062958|gb|AAZ21961.1| ribonucleoside-diphosphate reductase beta chain [Candidatus
Pelagibacter ubique HTCC1062]
Length = 337
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 87/341 (25%), Positives = 154/341 (45%), Gaps = 20/341 (5%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
E+ V +L P +Y W ++ +L+ HW+P EVP+ DD+ W+
Sbjct: 10 KEEIVKPQKMGLLVENP---VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK-- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
LT E+ ++ + FF ++ V N + E + A E VH +
Sbjct: 65 NLTQSEKNLLTQIFRFFTQADVEVQNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYS 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+++ ++G+ E E ++ + + + K ++ + + ++ + VF
Sbjct: 125 HLLDTIGMPESE-YSAFMKYKEMKDKYDYMQNF------------DMSSKKDIALTVAVF 171
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
EG+ + FA +L+ R NKM G+ + + +RDE+LH N I + + ENP +
Sbjct: 172 SAFTEGLQLFASFAILLNFPRHNKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEI 231
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEP 311
WT E + + E A+ G GL A + Y++FIANRR Q+GLEP
Sbjct: 232 WTPELKAELYKACRTIIEHEDAFIDLAFEMGPMQGLTAQDVKLYIRFIANRRLSQLGLEP 291
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ-GAELKW 351
++ +NP W+ +++ + NFFE R TEY + + W
Sbjct: 292 IYDVDKNPLTWLDSMLNAVEHMNFFEGRSTEYSKAATQGTW 332
>gi|300706309|ref|XP_002995432.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01]
gi|239604534|gb|EEQ81761.1| hypothetical protein NCER_101672 [Nosema ceranae BRL01]
Length = 325
Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats.
Identities = 92/328 (28%), Positives = 150/328 (45%), Gaps = 30/328 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +LN + L P+KY W+ Y A ++ W EV + D W S L D ER
Sbjct: 8 EPLLNPNEERYVLFPIKYHDIWQMYKKAESSFWTVEEVDLTADRNDWLS---LNDKERYF 64
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+S+ +V N+V ++ E + + Q E +HS + +I + D
Sbjct: 65 ISNILAFFAASDGIVNANLVERFANEVTILEAKCFYGFQVAIENIHSEMYSLLIDAYITD 124
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LFN +P I KA+WAL++ ++ + + EG
Sbjct: 125 QDEKTHLFNAISTIPCIKKKADWALKWI-------------KDEKSSFATRVIAFACVEG 171
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L M G+ + I RDE LH +F + + ++PH
Sbjct: 172 IFFSGAFASIFWLKNRGLMPGLTFSNELISRDEGLHCDFACLLNQYLINKSPH------- 224
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ EA +E + ++P +G+N QY++F+A+R +GLE + T N
Sbjct: 225 --ILDIVKEAVEIEKEFLGVSLPVNLIGMNCKLMCQYIEFVADRLLINLGLEKYYN-TLN 281
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
PF +M E I L + NFF+ R ++YQ+
Sbjct: 282 PFDFM-ENISLVGKTNFFDKRESQYQKA 308
>gi|172448|gb|AAA34987.1| ribonucleotide reductase subunit 2 (RNR2) [Saccharomyces
cerevisiae]
Length = 399
Score = 243 bits (619), Expect = 3e-62, Method: Composition-based stats.
Identities = 99/337 (29%), Positives = 156/337 (46%), Gaps = 33/337 (9%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPT---EVPMQDDLALWKSKNGLTD 76
++ +LN + L P+KY W+ Y + W E+ + D+ W N + +
Sbjct: 74 KEEPLLNEDKERTVLFPIKYHEIWQAY---EASFWTAETAEEIDLSKDIHDWN--NRMNE 128
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+ER I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I
Sbjct: 129 NERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLID 188
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ D E LFN +P I KA WAL++ Q DAD F + L +
Sbjct: 189 TYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-F 235
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I L + M G+ + I RDE LH +F + +K +
Sbjct: 236 ASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP-- 293
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
++ EA +E Y + +P +G+NA QY++F+A+R G + +
Sbjct: 294 -----AIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYY 348
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
K ENPF +M E I L + NFFE RV++YQ+ +
Sbjct: 349 KV-ENPFDFM-ENISLAGKTNFFEKRVSDYQKAGVMS 383
>gi|15150459|ref|NP_150454.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease
virus NI-2490]
gi|15149031|gb|AAK84981.1| LSDV020 ribonucleotide reductase small subunit [Lumpy skin disease
virus NI-2490]
gi|22595554|gb|AAN02587.1| ribonucleotide reductase small subunit [Lumpy skin disease virus
NW-LW]
Length = 321
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 93/332 (28%), Positives = 150/332 (45%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L S + P+ Y W Y A + W EV + DLA WK L+++E+
Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLSNEEQYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I +
Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN + I K+ WA ++ + F + L F V EG
Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI------------SNKKASFGERLIAFAAV-EG 165
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + +K
Sbjct: 166 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLK-------YPPSN 218
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ +++EA +E + +P +G+N QY++FIA+R ++G + +F + N
Sbjct: 219 EIITIIINEAVSIEKEFLTNIIPVKLIGMNCDLMSQYIEFIADRLLLELGCDKVF-MSTN 277
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV+EYQ+ +
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308
>gi|13876672|gb|AAK43560.1| ribonucleoside reductase [lumpy skin disease virus]
Length = 321
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 93/332 (28%), Positives = 148/332 (44%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L S + P+ Y W Y A + W EV + DLA WK L ++E+
Sbjct: 2 EPILKETSSRFVVFPILYKEIWVMYKKAVASFWTVDEVDLSKDLADWK---KLNNEEQYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ Y + E R + Q E +HS + +I +
Sbjct: 59 IKNILAFFAASDGIVNENLAERFYSEVQWSEARCFYGFQIAMENIHSEMYSLLIDTYISS 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN + I K+ WA ++ + F + L F V EG
Sbjct: 119 TKEKEHLFNAIETMDFIKKKSEWARKWI------------SNKKASFGERLIAFAAV-EG 165
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + +K
Sbjct: 166 IFFCGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIFKHLK-------YPPSN 218
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+++EA +E + +P +G+N QY++FIA+R ++G + +F + N
Sbjct: 219 DIITIIINEAVSIEKEFLTNIIPVKLIGMNCVLMSQYIEFIADRLLLELGCDKVF-MSTN 277
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF +M E I L+ + NFFE RV+EYQ+ +
Sbjct: 278 PFDFM-ENISLEGKTNFFEKRVSEYQKMGVIS 308
>gi|297202281|ref|ZP_06919678.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sviceus ATCC 29083]
gi|197710199|gb|EDY54233.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sviceus ATCC 29083]
Length = 340
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 103/323 (31%), Positives = 172/323 (53%), Gaps = 9/323 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D+ L+ E+ +I R + FFA+
Sbjct: 19 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVTD---LAKLSPAEQHLIGRLVAFFATG 75
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F+
Sbjct: 76 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPQDRAAAFDAV 135
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA + ++ + D + FL +L F EG++FY FA +
Sbjct: 136 ENIPSIREKAEFCFRWINEVEKLDRLESQAD-RRRFLLNLICFAACIEGLFFYGAFAYVY 194
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H++F DV++ ++ E P L+ QQ+ ML EA
Sbjct: 195 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDRLQQQVTDMLAEAV 254
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ +
Sbjct: 255 EAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQGV 312
Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
++ NFFE R + YQ E D
Sbjct: 313 QELTNFFERRPSAYQVAVEGTVD 335
>gi|91763118|ref|ZP_01265082.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus
Pelagibacter ubique HTCC1002]
gi|91717531|gb|EAS84182.1| ribonucleotide-diphosphate reductase beta subunit [Candidatus
Pelagibacter ubique HTCC1002]
Length = 342
Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats.
Identities = 87/341 (25%), Positives = 154/341 (45%), Gaps = 20/341 (5%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
E+ V +L P +Y W ++ +L+ HW+P EVP+ DD+ W+
Sbjct: 15 KEEIVKPQKMGLLVENP---VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK-- 69
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
LT E+ ++ + FF ++ V N + E + A E VH +
Sbjct: 70 NLTQSEKNLLTQIFRFFTQADVEVQNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYS 129
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+++ ++G+ E E ++ + + + K ++ + + ++ + VF
Sbjct: 130 HLLDTIGMPESE-YSAFMKYKEMKDKYDYMQNF------------DMSSKKDIALTVAVF 176
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
EG+ + FA +L+ R NKM G+ + + +RDE+LH N I + + ENP +
Sbjct: 177 SAFTEGLQLFASFAILLNFPRHNKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEI 236
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEP 311
WT E + + E A+ G GL A + Y++FIANRR Q+GLEP
Sbjct: 237 WTPELKAELYKACRTIIEHEDAFIDLAFEMGPMQGLTAQDVKLYIRFIANRRLSQLGLEP 296
Query: 312 LFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ-GAELKW 351
++ +NP W+ +++ + NFFE R TEY + + W
Sbjct: 297 IYDVDKNPLTWLDSMLNAVEHMNFFEGRSTEYSKAATQGTW 337
>gi|254455551|ref|ZP_05068980.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082553|gb|EDZ59979.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
Pelagibacter sp. HTCC7211]
Length = 335
Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats.
Identities = 82/330 (24%), Positives = 154/330 (46%), Gaps = 20/330 (6%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L P +Y W ++ +L+ HW+P EVP+ DD+ W+ L+ E+ ++
Sbjct: 19 LLVENP---VYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQK--NLSQSEKNLLT 73
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
+ FF ++ V N + E + A E VH + +++ ++G+ E
Sbjct: 74 QIFRFFTQADVEVNNCYLRHYTTVFKPTEVLMMMTAFAAMETVHVAAYSHLLDTIGMPES 133
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ + + + K ++ + ++ ++ + + VF EG+ +
Sbjct: 134 E-YSAFMKYKEMKDKYDYMQDF------------NVNSKEDIAKTVAVFSAFTEGLQLFA 180
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
FA +L+ R NKM G+ + + +RDE+LH N I + + ENP +WT + +++
Sbjct: 181 SFAILLNFPRHNKMKGMGQIVTWSVRDETLHCNSMIRIFKEFINENPEIWTPKLKKELYE 240
Query: 264 MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
E A+ G GL A + Y++FI NRR Q+GLEP++ +NP W
Sbjct: 241 ACRTIIAHEDAFIDLAFEMGPMEGLTAQEVKDYIRFIGNRRLTQLGLEPIYDVDKNPLGW 300
Query: 323 MSEVIDLKKEKNFFETRVTEYQQGA-ELKW 351
+ +++ + NFFE R TEY + + + W
Sbjct: 301 LDTMLNAVEHMNFFEGRATEYSKASTQGTW 330
>gi|239944172|ref|ZP_04696109.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces roseosporus NRRL 15998]
gi|239990628|ref|ZP_04711292.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces roseosporus NRRL 11379]
gi|291447643|ref|ZP_06587033.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
roseosporus NRRL 15998]
gi|291350590|gb|EFE77494.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
roseosporus NRRL 15998]
Length = 338
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 107/334 (32%), Positives = 183/334 (54%), Gaps = 10/334 (2%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+DK +L+ ++ L P++Y +E+Y A N W EV + D+A L+ E+
Sbjct: 5 EDKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQ 60
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ +
Sbjct: 61 HMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYL 120
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D + F+ E+PSI KA + ++ ++ TK + FL +L F
Sbjct: 121 PDPDDRAAAFDAVEEIPSIREKAQFCFKWMDSVEKIE-RLETKADRRRFLLNLICFAACI 179
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++FY FA + + G+A ++ RDE++H+NF +V++ ++ E P L+ E
Sbjct: 180 EGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDE 239
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
QQ+ ML EA E+ + + +G G+N S QY++ +A++R ++G ++ +
Sbjct: 240 LQQQVTDMLKEAVEAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGFPTVYG-S 298
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E+ +++ NFFE R + YQ E
Sbjct: 299 ENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGS 331
>gi|254388985|ref|ZP_05004216.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
clavuligerus ATCC 27064]
gi|294814921|ref|ZP_06773564.1| Ribonucleoside-diphosphate reductase beta chain protein
[Streptomyces clavuligerus ATCC 27064]
gi|326443293|ref|ZP_08218027.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
ATCC 27064]
gi|197702703|gb|EDY48515.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
clavuligerus ATCC 27064]
gi|218078699|emb|CAB90708.3| class Ia ribonucleotide-diphosphate reductase small subunit chain
[Streptomyces clavuligerus ATCC 27064]
gi|294327520|gb|EFG09163.1| Ribonucleoside-diphosphate reductase beta chain protein
[Streptomyces clavuligerus ATCC 27064]
Length = 339
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 102/323 (31%), Positives = 173/323 (53%), Gaps = 9/323 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D+ L+ E+ +I R + FFA+
Sbjct: 18 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVPD---LAKLSPGEQHLIGRLVAFFATG 74
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 75 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRNAAFAAV 134
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA + ++ ++ T+ + FL +L F EG++FY FA +
Sbjct: 135 ENIPSIREKAQFCFRWMDSVEKLD-QLETQADRRRFLLNLICFAACIEGLFFYGAFAYVY 193
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML EA
Sbjct: 194 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLKEAV 253
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ ++ + G G+N S +Y+Q +A++R ++G P++ +ENPF +M E+ +
Sbjct: 254 EAELQFSRDLCGDGLPGMNTESMREYLQCVADQRLARLGFAPVYG-SENPFSFM-ELQGV 311
Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
++ NFFE R + YQ E D
Sbjct: 312 QELTNFFERRPSAYQVAVEGSVD 334
>gi|21223593|ref|NP_629372.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
coelicolor A3(2)]
gi|7328345|emb|CAB82486.1| class I ribonucleotide-diphosphate reductase small subunit chain
[Streptomyces coelicolor A3(2)]
gi|8546891|emb|CAB94610.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
coelicolor A3(2)]
Length = 343
Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats.
Identities = 107/342 (31%), Positives = 184/342 (53%), Gaps = 10/342 (2%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E + K +L+ ++ L P++Y +E+Y A N W EV + D+A
Sbjct: 4 ETPAHPTTKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAK 59
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L+ E+ +I R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH +
Sbjct: 60 LSPMEQHLIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLT 119
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
++ + D + F +PSI KA + ++ ++ S TK + FL +L
Sbjct: 120 LLDTYLPDPEDRAAAFAAVENIPSIREKAEFCFRWMDSVESID-RLETKADRRRFLLNLI 178
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
F EG++FY FA + + G+A ++ RDE++H++F DV++ ++ E P
Sbjct: 179 CFAACIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEP 238
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
L+ + +++ ML EA E+ +A + G G+N S QY++ +A++R ++G
Sbjct: 239 ELFDDQLREQVTDMLREAVEAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFA 298
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
P++ +ENPF +M E+ +++ NFFE R + YQ E D
Sbjct: 299 PVYG-SENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGTVD 338
>gi|182436093|ref|YP_001823812.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces griseus subsp. griseus NBRC 13350]
gi|326776718|ref|ZP_08235983.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus
XylebKG-1]
gi|178464609|dbj|BAG19129.1| putative ribonucleoside-diphosphate reductase small subunit
[Streptomyces griseus subsp. griseus NBRC 13350]
gi|326657051|gb|EGE41897.1| Ribonucleoside-diphosphate reductase [Streptomyces cf. griseus
XylebKG-1]
Length = 338
Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats.
Identities = 105/336 (31%), Positives = 183/336 (54%), Gaps = 10/336 (2%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ ++K +L+ ++ L P++Y +E+Y A N W EV + D+A L+
Sbjct: 3 STEEKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPG 58
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+ MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ +
Sbjct: 59 EQHMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDT 118
Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
D + F+ E+PSI KA + ++ ++ TK + FL +L F
Sbjct: 119 YLPDPDDRAAAFDAVEEIPSIREKAQFCFRWMDSVEKID-RLETKADRRRFLLNLICFAA 177
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
EG++FY FA + + G+A ++ RDE++H+NF +V++ ++ E P L+
Sbjct: 178 CIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFD 237
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
QQ+ ML EA E+ + + +G G+N S QY++ +A++R ++G ++
Sbjct: 238 DALQQQVTDMLKEAVEAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLARLGFPTVYG 297
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ENPF +M E+ +++ NFFE R + YQ E
Sbjct: 298 -SENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGS 331
>gi|320008647|gb|ADW03497.1| Ribonucleoside-diphosphate reductase [Streptomyces flavogriseus
ATCC 33331]
Length = 338
Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats.
Identities = 106/334 (31%), Positives = 182/334 (54%), Gaps = 10/334 (2%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++K +L+ ++ L P++Y +E+Y A N W EV + D+A L+ E+
Sbjct: 5 ENKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQ 60
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
MI R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ +
Sbjct: 61 HMIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYL 120
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D + F+ E+PSI KA + ++ ++ TK + FL +L F
Sbjct: 121 PDPEDRAAAFDAVEEIPSIREKAQFCFRWMDSVEKIE-RLETKADRRRFLLNLICFAACI 179
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++FY FA + + G+A ++ RDE++H+NF +V++ ++ E P L+ E
Sbjct: 180 EGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPDLFDDE 239
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+Q+ ML EA E+ + + G G+N S QY++ +A++R ++G L+ +
Sbjct: 240 LRQQVTDMLKEAVEAELQFGRDLCGDGLPGMNTESMRQYLECVADQRLTRLGFPALYG-S 298
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E+ +++ NFFE R + YQ E
Sbjct: 299 ENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGS 331
>gi|328884923|emb|CCA58162.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Streptomyces venezuelae ATCC 10712]
Length = 338
Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats.
Identities = 107/336 (31%), Positives = 181/336 (53%), Gaps = 10/336 (2%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+K +L+ ++ L P++Y +E+Y A N W EV + D+A LT E+
Sbjct: 5 DEKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLTPGEQ 60
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ +
Sbjct: 61 HMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYL 120
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D + F +PSI KA + ++ ++ T+ + FL +L F
Sbjct: 121 PDPEDRAAAFAAVENIPSIREKAQFCFRWMDSVEKID-RLETQADRRRFLLNLICFAACI 179
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++FY FA + + G+A ++ RDE++H+NF +V++ ++ E P L+
Sbjct: 180 EGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDA 239
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+Q+ ML EA E+ + + G G+N S +Y+Q +A++R ++G P++ +
Sbjct: 240 LRQQVTDMLKEAVEAELQFGRDLCGDGLPGMNTESMREYLQCVADQRLQRLGFAPVYG-S 298
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
ENPF +M E+ +++ NFFE R + YQ E D
Sbjct: 299 ENPFSFM-ELQGVQELTNFFERRPSAYQVAVEGSVD 333
>gi|302558498|ref|ZP_07310840.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
griseoflavus Tu4000]
gi|302476116|gb|EFL39209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
griseoflavus Tu4000]
Length = 341
Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats.
Identities = 103/323 (31%), Positives = 176/323 (54%), Gaps = 9/323 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D+A L+ +E+ +I R + FFA+
Sbjct: 20 TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAKLSPEEQHLIGRLVAFFATG 76
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 77 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 136
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA + ++ ++ T+ + FL +L F EG++FY FA +
Sbjct: 137 ENIPSIREKAEFCFRWMDSVEKLD-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVY 195
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H++F DV++ ++ E P L+ ++ Q+ ML EA
Sbjct: 196 WFRGRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDEQLGQQVTAMLREAV 255
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ +
Sbjct: 256 EAELQFARDLCGDGLPGMNTESMRQYLECVADQRLVRLGFAPVYG-SENPFSFM-ELQGV 313
Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
++ NFFE R + YQ E D
Sbjct: 314 QELTNFFERRPSAYQVAVEGTVD 336
>gi|239929012|ref|ZP_04685965.1| ribonucleoside-diphosphate reductase beta chain [Streptomyces
ghanaensis ATCC 14672]
Length = 339
Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats.
Identities = 102/323 (31%), Positives = 173/323 (53%), Gaps = 9/323 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+
Sbjct: 18 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPAEQHLIGRLVAFFATG 74
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 75 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 134
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA + + ++ T+ + FL +L F EG++FY FA +
Sbjct: 135 ENIPSIREKAEFCFTWMDSVEKLD-RLQTQADRRRFLLNLICFAACIEGLFFYGAFAYVY 193
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H++F DV++ ++ E P L+ + Q+ ML EA
Sbjct: 194 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDERLGQQVTDMLREAV 253
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + G G+N S QY++ +A++R ++G P++ ++NPF +M E+ +
Sbjct: 254 EAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGV 311
Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
++ NFFE R + YQ E D
Sbjct: 312 QELTNFFERRPSAYQVAVEGTVD 334
>gi|282861024|ref|ZP_06270089.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE]
gi|282563682|gb|EFB69219.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. ACTE]
Length = 340
Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats.
Identities = 103/321 (32%), Positives = 174/321 (54%), Gaps = 9/321 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+
Sbjct: 19 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATG 75
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F+
Sbjct: 76 DSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRAAAFDAV 135
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
E+PSI KA + ++ ++ T+ + FL +L F EG++FY FA +
Sbjct: 136 EEIPSIREKAQFCFKWMDSVEEID-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVY 194
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML EA
Sbjct: 195 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLREAV 254
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ + + +G G+N S QY++ +A++R ++G L+ +ENPF +M E+ +
Sbjct: 255 EAELQFGRDLCGEGLPGMNTESMRQYLECVADQRLTRLGFPALYG-SENPFSFM-ELQGV 312
Query: 330 KKEKNFFETRVTEYQQGAELK 350
++ NFFE R + YQ E
Sbjct: 313 QELTNFFERRPSAYQVAVEGS 333
>gi|294631326|ref|ZP_06709886.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. e14]
gi|292834659|gb|EFF93008.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. e14]
Length = 339
Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats.
Identities = 104/323 (32%), Positives = 174/323 (53%), Gaps = 9/323 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D+A LT E+ +I R + FFA+
Sbjct: 18 TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAKLTPGEQHLIGRLVAFFATG 74
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 75 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 134
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA + + ++ T+ + FL +L F EG++FY FA +
Sbjct: 135 ENIPSIREKAEFCFTWMDSVEKLD-RLETRADRRRFLLNLICFAACIEGLFFYGAFAYVY 193
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H++F DV++ ++ E P L+ + +Q+ ML EA
Sbjct: 194 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPDLFDDQLEQQVTDMLREAV 253
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + G G+N S QY++ +A++R ++G P++ +ENPF +M E+ +
Sbjct: 254 EAELQFARDLCGDGLPGMNTDSMRQYLECVADQRLTRLGFAPVYG-SENPFSFM-ELQGV 311
Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
++ NFFE R + YQ E D
Sbjct: 312 QELTNFFERRPSAYQVAVEGTVD 334
>gi|117928932|ref|YP_873483.1| ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus
11B]
gi|117649395|gb|ABK53497.1| Ribonucleoside-diphosphate reductase [Acidothermus cellulolyticus
11B]
Length = 348
Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats.
Identities = 112/340 (32%), Positives = 188/340 (55%), Gaps = 10/340 (2%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+ + +L+ D+ L P++Y +E++ +A N W EV + DLA +
Sbjct: 9 TNIADHERHALLDPGMDL-TLRPMRYPHFFERFKAAIRNTWTVEEVDLHSDLADLR---K 64
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L+ E ++KR + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH +
Sbjct: 65 LSPAEHHLVKRLVAFFATGDTIVANNLVLNLYQHINSPEARLYLSRQLFEEAVHVQFYLA 124
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
++ + DE E F +PSI KA++ ++ ++ T + FL +L
Sbjct: 125 LLDTYITDERERAEAFAAIENIPSIKRKADFCFRWIDSIFDL-RELRTAADRRSFLLNLI 183
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
F EG++FY FA + L + G+A ++ RDES+H+ F DVI+ ++ E P
Sbjct: 184 CFAACIEGLFFYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFAFDVIDTVRREEP 243
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
L+ E +++R ML EA E +A + + +G G++ Y++ +A+RRC Q+GLE
Sbjct: 244 ELFDDELARQAREMLAEAVDCETQFAEDLLGQGVPGMSLADMRSYLEHVADRRCVQLGLE 303
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
P++ + NPF +M E+ D+++ NFFE RV YQ G +
Sbjct: 304 PIYG-SPNPFTFM-ELQDVQELSNFFERRVAAYQIGVSGE 341
>gi|329939692|ref|ZP_08288993.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
griseoaurantiacus M045]
gi|329301262|gb|EGG45157.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
griseoaurantiacus M045]
Length = 347
Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats.
Identities = 105/321 (32%), Positives = 174/321 (54%), Gaps = 9/321 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D+A LT ER +I R + FFA+
Sbjct: 26 TLRPMRYPDFYERYRDAIKNTWHVEEVDLHSDVAD---LAKLTPAERHLIGRLVAFFATG 82
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 83 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 142
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA + ++ ++ T+ + FL +L F EG++FY FA +
Sbjct: 143 ENIPSIREKAEFCFRWMDSVERLD-RLETRSDRRRFLLNLICFAACIEGLFFYGAFAYVY 201
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H++F DV++ ++ E P L+ +E ++ ML EA
Sbjct: 202 WFRGRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPGLFDEELGRQVTDMLREAV 261
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + G G+N S QY+Q +A++R ++G P++ +ENPF +M E+ +
Sbjct: 262 EAELQFARDLCGDGLPGMNTESMRQYLQCVADQRLVRLGFAPVYG-SENPFSFM-ELQGV 319
Query: 330 KKEKNFFETRVTEYQQGAELK 350
++ NFFE R + YQ E
Sbjct: 320 QELTNFFERRASAYQVAVEGS 340
>gi|15896521|ref|NP_349870.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
acetobutylicum ATCC 824]
gi|15026352|gb|AAK81210.1|AE007823_4 Ribonucleotide reductase beta subunit [Clostridium acetobutylicum
ATCC 824]
gi|325510679|gb|ADZ22315.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
acetobutylicum EA 2018]
Length = 344
Score = 241 bits (616), Expect = 9e-62, Method: Composition-based stats.
Identities = 94/349 (26%), Positives = 164/349 (46%), Gaps = 13/349 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
P+ K+++N + ++N +KY W + Y NN W+P E+ + DL
Sbjct: 5 RRPLFNENGDTETSKKKIVNGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEINLSQDL 64
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ LTD+ER + L F +S+ N + I +++ E L QAF+EA
Sbjct: 65 KDY---GKLTDNERTAYDKILSFLIFLDSVQTAN-LGNINDYITASEVNLCLTIQAFQEA 120
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ ++ E R K + L + ++ E
Sbjct: 121 VHSQSYSYMLDTICSPEK------RNEILFQWKDDEVLLSRNKFIGDIYNNFVEEPSDEN 174
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ V EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++
Sbjct: 175 FLKAIMGNYVLEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKEL 234
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P ++T+E +++ + M+ EI + H + G+N E Y++++ NRR
Sbjct: 235 QKEEPDMFTEEIKKELKDMVKTGVENEITWGHYVIGDNIQGINKKLIEDYIKYLGNRRLE 294
Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
IG EP+++ Y ENP W+ D + +FFE + T Y + + L D
Sbjct: 295 AIGFEPIYEGYDENPALWVDIYADANSVKTDFFEAKSTAYAKASTLVDD 343
>gi|314055235|ref|YP_004063573.1| ribonucleoside-diphosphate reductase small subunit-possible host
origin [Ostreococcus tauri virus 2]
gi|313575126|emb|CBI70139.1| ribonucleoside-diphosphate reductase small subunit-possible host
origin [Ostreococcus tauri virus 2]
Length = 408
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 90/334 (26%), Positives = 150/334 (44%), Gaps = 31/334 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + PLKY WE Y A ++W EV + DL WK+ L ++E+
Sbjct: 93 EPILAPTLNRFTVFPLKYPQLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNENEKKF 149
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA S+ +V NI + E R + Q E VH T+ +I D
Sbjct: 150 IKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLIDKYIKD 209
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LF + VP I KA WA+++ D + + EG
Sbjct: 210 GSEKKQLFEAIQTVPCIEKKAKWAMKW-------------FDTKSRSFAERLFAFACVEG 256
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE LH F +++ ++ +
Sbjct: 257 IFFSGSFCAIYWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLRN-------RPTT 309
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ ++ EA +E + + +P +G+N+ +Y++++++R Q+G+ P++ +N
Sbjct: 310 ETIHAIVKEAVEIEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQVGVPPIWN-AKN 368
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
PF +M E I L + NFFE RV +Y +L D
Sbjct: 369 PFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 398
>gi|239947951|ref|ZP_04699704.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239922227|gb|EER22251.1| ribonucleoside-diphosphate reductase, beta subunit [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 327
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 89/321 (27%), Positives = 151/321 (47%), Gaps = 17/321 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++
Sbjct: 10 YKPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + R E L + E VH + +++ ++G+ E E ++ + +
Sbjct: 68 IEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K ++ Q+ D ++ L VF EG+ + FA +L+ R
Sbjct: 127 EMKDKYDYMQQF------------GVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDE+LH N I + IENP +WT+ +++ E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVIENPEVWTETLRKRIYEACTTIVHFED 234
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE R TEY + W+
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|291437353|ref|ZP_06576743.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
ghanaensis ATCC 14672]
gi|291340248|gb|EFE67204.1| ribonucleotide-diphosphate reductase small chain [Streptomyces
ghanaensis ATCC 14672]
Length = 340
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 102/323 (31%), Positives = 173/323 (53%), Gaps = 9/323 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D+A L+ E+ +I R + FFA+
Sbjct: 19 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPAEQHLIGRLVAFFATG 75
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 76 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 135
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA + + ++ T+ + FL +L F EG++FY FA +
Sbjct: 136 ENIPSIREKAEFCFTWMDSVEKLD-RLQTQADRRRFLLNLICFAACIEGLFFYGAFAYVY 194
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H++F DV++ ++ E P L+ + Q+ ML EA
Sbjct: 195 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDERLGQQVTDMLREAV 254
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + G G+N S QY++ +A++R ++G P++ ++NPF +M E+ +
Sbjct: 255 EAELQFARDLCGDGLPGMNTESMRQYLECVADQRLTRLGFAPVYG-SQNPFSFM-ELQGV 312
Query: 330 KKEKNFFETRVTEYQQGAELKWD 352
++ NFFE R + YQ E D
Sbjct: 313 QELTNFFERRPSAYQVAVEGTVD 335
>gi|157964544|ref|YP_001499368.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
massiliae MTU5]
gi|157844320|gb|ABV84821.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia
massiliae MTU5]
Length = 336
Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats.
Identities = 89/321 (27%), Positives = 151/321 (47%), Gaps = 17/321 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++
Sbjct: 11 YKPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 68
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + R E L + E VH + +++ ++G+ E E ++ + +
Sbjct: 69 IEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 127
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K ++ Q+ DA ++ L VF EG+ + FA +L+ R
Sbjct: 128 EMKDKYDYMQQF------------GVDAKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 175
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDE+LH N I + ENP +WT+ +++ E
Sbjct: 176 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 235
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ +
Sbjct: 236 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 295
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE R TEY + W+
Sbjct: 296 TNFFENRATEYSKAATTGSWE 316
>gi|9632043|ref|NP_048832.1| hypothetical protein PBCV1_A476R [Paramecium bursaria Chlorella
virus 1]
gi|1620147|gb|AAC96843.1| contains ribonucleotide reductase (RR) signature; similar to
tobacco RR small subunit, corresponds to Swiss-Prot
Accession Number P49730 [Paramecium bursaria Chlorella
virus 1]
Length = 324
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 98/336 (29%), Positives = 164/336 (48%), Gaps = 29/336 (8%)
Query: 19 VDDKRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ + +L P++Y W+ Y A W EVP+ D+ W+ L DD
Sbjct: 2 ANQEPILADNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWRE--KLNDD 59
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
ER IK LGFFA S+ +V N+ ++ PE RQ+ Q F E++HS + +I +
Sbjct: 60 ERHFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDA 119
Query: 138 LGLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
L DE ELF+ +P++ KA WA ++ + + F + L + V
Sbjct: 120 LISDEQERNELFDAIENIPAVHNKAKWAQKWLE-------------PGKSFAERLVAW-V 165
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
EG+ F F I L M G+ ++I RDE LH FG + ++++ + P
Sbjct: 166 CVEGILFSGSFCAIFWLRNKGVMPGLGLSNEFISRDEGLHQQFGELMYSKLQNKLPF--- 222
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
+ + ++ EA E + + +P +G+NA QY++F+A+R +G E ++
Sbjct: 223 ----ETVKQIITEAVENEKEFICDAIPCRLIGMNAELMGQYIEFVADRIFVALGYEKVYN 278
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++NPF +M E+I L+ + NFFE RV++YQ+ +K
Sbjct: 279 -SKNPFAFM-ELISLQGKTNFFEKRVSDYQRPGVMK 312
>gi|114799612|ref|YP_759103.1| ribonucleotide-diphosphate reductase subunit beta [Hyphomonas
neptunium ATCC 15444]
gi|114739786|gb|ABI77911.1| ribonucleoside-diphosphate reductase, beta subunit [Hyphomonas
neptunium ATCC 15444]
Length = 345
Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats.
Identities = 84/322 (26%), Positives = 151/322 (46%), Gaps = 18/322 (5%)
Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
N P +Y WA+E + HWMP EVP+ +D W L+D ER ++ + FF
Sbjct: 16 NAYKPFRYPWAYEFWKKQQQVHWMPEEVPLGEDCKDWA--VKLSDAERNLLTQIFRFFTQ 73
Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
S+ V N + E L + E +H + ++ ++G+ + E F+ + E
Sbjct: 74 SDVEVGANYMEHYMPLFKPVEVSMMLASFSNMETIHVAAYALLLETIGMPDSE-FSAFME 132
Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
+ AK ++ Q+ + +++ + VF EG+ + FA +++
Sbjct: 133 YKEMAAKHDYLGQF------------GTETNEDIAVSMAVFGAFTEGLQLFASFAMLMNF 180
Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
R NKM G+ + + +RDESLH I + + E + T E +++ R L
Sbjct: 181 PRFNKMKGMGQIVTWSIRDESLHCEGMIKLFHSFCAET-GVMTDELRERIRDCCRTVVAL 239
Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
E + G G+ A + Y+++IA+ R +Q+ LEP++ T++P PW++E+++
Sbjct: 240 EDKFIELAFEMGPVEGMTADDIKNYIRYIADWRLNQLKLEPIYGVTKHPIPWLTEILNGV 299
Query: 331 KEKNFFETRVTEYQQ-GAELKW 351
+ NFFE R TEY + + W
Sbjct: 300 EHANFFEQRSTEYSKGATKGDW 321
>gi|126664354|ref|ZP_01735338.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17]
gi|126630680|gb|EBA01294.1| Ribonucleotide reductase, beta subunit [Marinobacter sp. ELB17]
Length = 352
Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 135/337 (40%), Positives = 191/337 (56%), Gaps = 5/337 (1%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
VNVDDKR++N +DVNQL P KY WAWE +++A NHW P +V M D+ + + L
Sbjct: 21 APVNVDDKRVINGNTDVNQLAPFKYPWAWEYFMNANKNHWTPLDVNMSQDVHDYHHR--L 78
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
E+ + + L + +S+ L NI LA+ ++ PE + Y RQ +EEAVH+ T+Q+
Sbjct: 79 NPAEKHVFENVLAYLTTSDILAMRNIGLAVMEKMTAPELQIYQARQVYEEAVHTWTYQHC 138
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
I +L LD+GE++N YR VP I K A + KD QEF+ F
Sbjct: 139 IETLNLDQGEIYNRYRVVPQINGKIQMANRRLNAAMRSDINLRNKDDLQEFIMSYLFFAA 198
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
VFEG WFY GF+ I +L R M G EQ+QYI+RDE++H +FG+ V+NQI E +
Sbjct: 199 VFEGCWFYNGFSPIFALQRRGLMRGTGEQFQYILRDEAMHFSFGLKVVNQILEEENISFD 258
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
+ R M E+ E YA+ + +G +A + +F+ANRR + L F
Sbjct: 259 P---KAVRDMWDESEAAESDYANYILRDPILGYSAEYHIEQFRFVANRRARTVNLPEPFP 315
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
+N PW+ E ++KEKNFFETRV EYQ GA+L+W
Sbjct: 316 GAKNVSPWLEEQATMRKEKNFFETRVIEYQTGAQLEW 352
>gi|157803769|ref|YP_001492318.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
canadensis str. McKiel]
gi|157785032|gb|ABV73533.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
canadensis str. McKiel]
Length = 324
Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 86/321 (26%), Positives = 150/321 (46%), Gaps = 17/321 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++
Sbjct: 10 YKPFSYPWAYDAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + R E L + E +H + +++ ++G+ E E ++ + +
Sbjct: 68 IEVNNCYMKHYSRVFKPTEILMMLSAFSNMETIHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K ++ Q+ D ++ L VF EG+ + FA +L+ R
Sbjct: 127 EMKDKYDYMQQF------------GVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDE+LH N I + ENP +WT+ +++ E
Sbjct: 175 FNKMKGMGQVIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYGACTTIVHFED 234
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE R TEY + W+
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|157825769|ref|YP_001493489.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari
str. Hartford]
gi|157799727|gb|ABV74981.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia akari
str. Hartford]
Length = 327
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 17/321 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA+ + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++
Sbjct: 10 YKPFSYPWAYTAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + R E L + E VH + +++ ++G+ E E ++ + +
Sbjct: 68 IEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K ++ Q+ D ++ L VF EG+ + FA +L+ R
Sbjct: 127 EMKDKYDYIQQF------------GVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDE+LH N I + ENP +WT+ +++ E
Sbjct: 175 FNKMKGMGQIISWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE R TEY + W+
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|159040364|ref|YP_001539617.1| ribonucleoside-diphosphate reductase [Salinispora arenicola
CNS-205]
gi|157919199|gb|ABW00627.1| Ribonucleoside-diphosphate reductase [Salinispora arenicola
CNS-205]
Length = 350
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 107/334 (32%), Positives = 186/334 (55%), Gaps = 12/334 (3%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L+ D+ L P++Y ++++ A N W EV + DLA L+ ER ++
Sbjct: 21 LLDPGMDL-TLRPMRYPHFFDRFKEAIKNTWTVEEVDLHSDLAD---LAKLSPAERHLVS 76
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE
Sbjct: 77 RLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEK 136
Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
E F +PSI KA + ++ ++ T+ + FL +L F EG++
Sbjct: 137 ERFAAFAAVENIPSIARKAEFCFRWIDSIFEL-RELRTRADRRAFLLNLICFAACIEGLF 195
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY FA + L + G+A ++ RDES+H+ F DV++ I+ E P L+ + +++
Sbjct: 196 FYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTIRAEEPDLFDADLERQ 255
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
+ M+ EA E +A + + +G GL+ +Y+Q +A+RR +G+ P++ ++NPF
Sbjct: 256 IKDMVTEAVDCEAQFAEDLLEQGVSGLSLADMREYLQHVADRRLVTLGIAPIYG-SQNPF 314
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
+M E+ D+++ NFFE RV+ YQ G + +D
Sbjct: 315 AFM-ELQDVQELSNFFERRVSAYQVGVSGSVTFD 347
>gi|222475064|ref|YP_002563479.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma
marginale str. Florida]
gi|222419200|gb|ACM49223.1| ribonuceoside-diphosphate reductase beta chain (nrdB) [Anaplasma
marginale str. Florida]
Length = 343
Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats.
Identities = 87/324 (26%), Positives = 152/324 (46%), Gaps = 14/324 (4%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF
Sbjct: 26 RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKT--KLSEQEKNLLVQIFRFFT 83
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
++ V N + E L + E VH + Y++ ++G+ E E + +
Sbjct: 84 QADIEVNNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFL 142
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + K ++ ++ ++ K + + L VF EG+ + FA +L+
Sbjct: 143 KFEVMKKKYDYMQRFEES---------RKGDKRHVAKTLAVFGAFTEGLQLFASFAILLN 193
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
R KM G+ + + RDE+LH I + N EN +W + +++
Sbjct: 194 FQRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDENLREELYGACRVIVS 253
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
LE + G GL+A ++Y+++IANRR Q+ LEP++ NP PW+ E+++
Sbjct: 254 LEDEFIDLAFALGDVEGLSAAEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNG 313
Query: 330 KKEKNFFETRVTEYQQ-GAELKWD 352
+ NFFE RVTEY + E WD
Sbjct: 314 VEHTNFFENRVTEYSRAATEGTWD 337
>gi|56416698|ref|YP_153772.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
marginale str. St. Maries]
gi|254994906|ref|ZP_05277096.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
marginale str. Mississippi]
gi|255003042|ref|ZP_05278006.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
marginale str. Puerto Rico]
gi|255004164|ref|ZP_05278965.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
marginale str. Virginia]
gi|56387930|gb|AAV86517.1| ribonuceoside-diphosphate reductase beta chain [Anaplasma marginale
str. St. Maries]
Length = 324
Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats.
Identities = 87/324 (26%), Positives = 152/324 (46%), Gaps = 14/324 (4%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF
Sbjct: 7 RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKT--KLSEQEKNLLVQIFRFFT 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
++ V N + E L + E VH + Y++ ++G+ E E + +
Sbjct: 65 QADIEVNNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFL 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + K ++ ++ ++ K + + L VF EG+ + FA +L+
Sbjct: 124 KFEVMKKKYDYMQRFEES---------RKGDKRHVAKTLAVFGAFTEGLQLFASFAILLN 174
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
R KM G+ + + RDE+LH I + N EN +W + +++
Sbjct: 175 FQRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDENLREELYGACRVIVS 234
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
LE + G GL+A ++Y+++IANRR Q+ LEP++ NP PW+ E+++
Sbjct: 235 LEDEFIDLAFALGDVEGLSAAEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNG 294
Query: 330 KKEKNFFETRVTEYQQ-GAELKWD 352
+ NFFE RVTEY + E WD
Sbjct: 295 VEHTNFFENRVTEYSRAATEGTWD 318
>gi|255080138|ref|XP_002503649.1| predicted protein [Micromonas sp. RCC299]
gi|226518916|gb|ACO64907.1| predicted protein [Micromonas sp. RCC299]
Length = 324
Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats.
Identities = 94/330 (28%), Positives = 154/330 (46%), Gaps = 29/330 (8%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
ML D L P+K W+ Y A + W E+ + D W + L D+E+ I
Sbjct: 1 MLQDNEDRFCLFPIKEHAVWKMYKQAEASFWSAEEIDLSMDYKDWVT---LNDNEQHFIS 57
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-- 141
L FFA+S+ +V N+ L + + PE R + Q E +HS T+ +I + D
Sbjct: 58 HVLAFFAASDGIVLENLGLRFMKDVQLPEARAFYAFQLAIENIHSETYGLLIDTYVKDSV 117
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ LF VP++ KA WAL++ Q+ E + V + EG++
Sbjct: 118 KKRHLFRAIHNVPTVARKAQWALKWIQS--------------SECFAERLVAFACVEGIF 163
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
F F I L + M G+ + I RDE LH +F + + +K +E
Sbjct: 164 FSGSFCAIFWLKKRGLMRGLTFSNELISRDEGLHCDFACLLYSMLKHPLDPARLQE---- 219
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
++ +A +E + + + VG+NA +Y++F+A+R Q+G+E ++ T NPF
Sbjct: 220 ---IVKDAVDIEKEFVCDALSCALVGMNADLMSEYIEFVADRLMTQLGVEKVWN-TPNPF 275
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
WM E+I L+ + NFFE RV +YQ+ +
Sbjct: 276 EWM-EMISLQGKANFFEHRVDQYQKANVMT 304
>gi|114568952|ref|YP_755632.1| ribonucleotide-diphosphate reductase subunit beta [Maricaulis maris
MCS10]
gi|114339414|gb|ABI64694.1| Ribonucleoside-diphosphate reductase [Maricaulis maris MCS10]
Length = 345
Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats.
Identities = 79/320 (24%), Positives = 147/320 (45%), Gaps = 18/320 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P +Y WA++ + HWMP EVP+ +D W + L D ER ++ + FF S+
Sbjct: 18 YKPFRYPWAYDFWKKQQQVHWMPEEVPLGEDCKDWAT--KLNDGERNLLTQIFRFFTQSD 75
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V +N + R E + L + E +H + ++ ++G+ + E F+ + E
Sbjct: 76 VEVNDNYMERYSRVFRPTEVKMMLASFSNMETIHIAAYALLLETIGMPDSE-FSAFMEYQ 134
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ K ++ ++ + + + L+ + +F EG+ + FA +++ R
Sbjct: 135 AMADKHDYMQRF------------GVEDEADILRTVAMFGAFTEGLQLFASFAMLMNFPR 182
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDESLH I + + E T+E + LE
Sbjct: 183 FNKMKGMGQIVTWSIRDESLHCEGMIKLFHAFAEET-GALTQEVKDDITECCRTVVGLED 241
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ G G+ + Y+++IA+ R Q+GL ++ E+P PW+SE+++ +
Sbjct: 242 KFIDLAFEAGDVEGMTPDDIKTYIRYIADWRLGQLGLPKIYGVKEHPLPWLSEILNGVEH 301
Query: 333 KNFFETRVTEYQQ-GAELKW 351
NFFE R TEY + + W
Sbjct: 302 ANFFEARATEYSKGATKGDW 321
>gi|149375674|ref|ZP_01893443.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola
DG893]
gi|149360076|gb|EDM48531.1| Ribonucleotide reductase, beta subunit [Marinobacter algicola
DG893]
Length = 352
Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats.
Identities = 137/339 (40%), Positives = 193/339 (56%), Gaps = 5/339 (1%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
G VNVDDKR++N +D+NQL P KY WAWE +++A NHW P +V M D+ + +
Sbjct: 19 GPAPVNVDDKRVINGETDINQLAPFKYPWAWEYFMNANKNHWTPLDVNMAQDVHDYHHR- 77
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L+ E+ + + L + +S+ L NI LA+ +S PE + Y RQ +EEA+H+ +Q
Sbjct: 78 -LSAPEKHVYENVLAYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEAMHTWAYQ 136
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ I +L LD+ E++N YR VP+I K A + KD QEF+ F
Sbjct: 137 HCIETLNLDQSEIYNRYRVVPAINGKIQMANRRLDAAMRSDMNLRDKDDLQEFIMSYLFF 196
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
VFEG WFY GF+ I +L R M G EQ QYI+RDE++H +FG+ V+NQI E
Sbjct: 197 AAVFEGAWFYNGFSPIFALQRRGLMRGTGEQLQYILRDEAMHFSFGLKVVNQILEEENIT 256
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+ R M E+ E AYA+ + +G +A + +F+ANRR +GLE
Sbjct: 257 LDP---KAVRDMWDESEAAETAYANYILRDPILGYSAQYHSEQFRFVANRRARTVGLEEP 313
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
F +N PW+ E L+KEKNFFETRV EYQ GA+L+W
Sbjct: 314 FPGAKNVSPWLDEQATLRKEKNFFETRVIEYQTGAQLEW 352
>gi|320107274|ref|YP_004182864.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4]
gi|319925795|gb|ADV82870.1| Ribonucleoside-diphosphate reductase [Terriglobus saanensis SP1PR4]
Length = 346
Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats.
Identities = 100/321 (31%), Positives = 172/321 (53%), Gaps = 8/321 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y ++ + N W EV Q DL K + LT E I+R + FFA+
Sbjct: 24 TLRPMRYPQFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LTPAEIHTIQRLVAFFATG 81
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + + E F
Sbjct: 82 DSIVSNNLVLNLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDNYIPEPEERNAAFAAV 141
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI+ KA++ +++ ++ TK+ ++FL +L F EG++F+ FA +
Sbjct: 142 ENIPSISKKADFCMKWMDSIQQLD-QLETKEHRRQFLLNLICFAACIEGLFFFAAFAYVY 200
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDES HL F +V+ ++ + P LW E +++ M+ EA
Sbjct: 201 FFRSKGLLHGLASGTNWVFRDESAHLEFAFEVVQVVRAQEPDLWDTELERQVVVMMEEAI 260
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E +A + + G GL+ QY+ ++A+ R ++G+ F +NPF +M E+ D+
Sbjct: 261 DAEAQFAEDLLSGGVAGLSVRDMRQYLGYVADSRLERLGIGAHFN-AKNPFSFM-ELQDV 318
Query: 330 KKEKNFFETRVTEYQQGAELK 350
++ NFFE RV+ YQ +
Sbjct: 319 QELTNFFERRVSAYQTAVPGE 339
>gi|237752265|ref|ZP_04582745.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
winghamensis ATCC BAA-430]
gi|229376507|gb|EEO26598.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
winghamensis ATCC BAA-430]
Length = 343
Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats.
Identities = 95/348 (27%), Positives = 176/348 (50%), Gaps = 14/348 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I + +V+++R+ + +L +KY WA+ + N W P EV M D
Sbjct: 6 RKKIYNPNSKESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDK 65
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ +GLT +E++ R L +SL NN++ + ++++PE L+RQAFEEA
Sbjct: 66 RDY--SDGLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEA 123
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+HS ++ ++ S+ + E++ M+R + +K ++ + LS + +
Sbjct: 124 LHSQSYAVMVESISANTDEIYEMWRTDIQLKSKNDYIANVYEELS--------VNPTESI 175
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L + EG++FY+GFA +L R+ KM+G A+ ++I RDE HL ++IN +
Sbjct: 176 LLKAMFANQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMINSL 235
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E PHL+TK+ ++ M EA +E + +GL + +Y++++A+ R
Sbjct: 236 RKEMPHLFTKDLIEEVLEMFREAVRVESTWGEYITQGQILGLTSEIIHEYIRYLADNRLT 295
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
++GL L+ +P W+ + + NFFE VT Y +G+ + +D
Sbjct: 296 RVGLPALYN-ARHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS-INFD 341
>gi|73852496|ref|YP_293780.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
virus 86]
gi|72415212|emb|CAI65449.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
virus 86]
Length = 325
Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 97/332 (29%), Positives = 155/332 (46%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D L P+ + +E+Y A + W +E+ + D W LT++E+
Sbjct: 3 EPLLIENKDRFVLFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDW---PKLTENEQHF 59
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+++ +V N+V + PE R + Q E VH+ T+ ++ SL D
Sbjct: 60 IKYILAFFATADGIVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVED 119
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LF R + SI KA+WAL++ ++ F + L F VV EG
Sbjct: 120 KDEQRNLFRAIRTIQSIKNKADWALKWMN-------------NERSFAERLIAFAVV-EG 165
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE LH +F + + K
Sbjct: 166 IFFSGAFCAIFWLKKRAIMPGLTFSNELISRDEGLHTDFACMLYRNH------IIHKLPY 219
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ ++ A LE + E +P +G+NA S Y++F+A+R +G + N
Sbjct: 220 ETVLDIITNAVELERLFICEALPVSLIGINAESMSTYIKFVADRLLISLGYAKHYNVV-N 278
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 279 PFEWM-ELISLEGKTNFFEKRVGEYQKAGVMD 309
>gi|295836584|ref|ZP_06823517.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. SPB74]
gi|197697282|gb|EDY44215.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. SPB74]
Length = 345
Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 102/325 (31%), Positives = 175/325 (53%), Gaps = 11/325 (3%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y +A N W EV + D+A LT E+ +I R + FFA+
Sbjct: 24 TLRPMRYPDFYERYRNAIKNTWTVEEVDLHSDVAD---LAKLTPGEQHLIGRLVAFFATG 80
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 81 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRADAFAAV 140
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA + ++ + +K + FL +L F EG++FY FA +
Sbjct: 141 ENIPSIREKAEFCFKWIDEVEKID-RLESKADRRRFLLNLICFAACIEGLFFYGAFAYVY 199
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H++F DV++ ++ E P L+ E +Q+ + ML A
Sbjct: 200 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDAELEQEVKDMLDGAV 259
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + G G+N S +Y+Q +A++R ++G P++ + NPF +M E+ +
Sbjct: 260 NAELQFARDLCGDGLPGMNTESMREYLQCVADQRLQRLGFAPVYG-SSNPFSFM-ELQGV 317
Query: 330 KKEKNFFETRVTEYQQG--AELKWD 352
++ NFFE R + YQ + +D
Sbjct: 318 QELTNFFERRPSAYQVAVEGSVSFD 342
>gi|297192180|ref|ZP_06909578.1| ribonucleoside-diphosphate reductase subunit beta protein
[Streptomyces pristinaespiralis ATCC 25486]
gi|197720175|gb|EDY64083.1| ribonucleoside-diphosphate reductase subunit beta protein
[Streptomyces pristinaespiralis ATCC 25486]
Length = 340
Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 103/321 (32%), Positives = 176/321 (54%), Gaps = 9/321 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D+A L+ E+ MI R + FFA+
Sbjct: 19 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMIGRLVAFFATG 75
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 76 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAV 135
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA++ ++ ++ S T+ + FL +L F EG++FY FA +
Sbjct: 136 ENIPSIREKASFCFKWMDSVESID-RLETQADRRRFLLNLICFAACIEGLFFYGAFAYVY 194
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H+NF +V++ ++ E P L+ E +Q+ ML EA
Sbjct: 195 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDELRQQVTDMLKEAV 254
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ + + +G G+N S +Y+Q +A++R ++G P++ ++NPF +M E+ +
Sbjct: 255 EAELQFGRDLCGEGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SQNPFSFM-ELQGV 312
Query: 330 KKEKNFFETRVTEYQQGAELK 350
++ NFFE R + YQ E
Sbjct: 313 QELTNFFERRPSAYQVAVEGS 333
>gi|67459102|ref|YP_246726.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia felis
URRWXCal2]
gi|67004635|gb|AAY61561.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia felis
URRWXCal2]
Length = 327
Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 17/321 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA+E + + HW+P EVP+ DD+ WK L E+ ++ + FF ++
Sbjct: 10 YKPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLAPGEKHLLTQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + R E L + E VH + +++ ++G+ E E ++ + +
Sbjct: 68 IEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K ++ Q+ D ++ L VF EG+ + FA +L+ R
Sbjct: 127 EMKDKYDYMQQF------------GVDTKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDE+LH N I + ENP +WT+ +++ E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE R TEY + W+
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|190570498|ref|YP_001974856.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|213019257|ref|ZP_03335064.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
gi|190356770|emb|CAQ54129.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|212995366|gb|EEB56007.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
Length = 329
Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 87/321 (27%), Positives = 156/321 (48%), Gaps = 14/321 (4%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF ++
Sbjct: 10 YKPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSNVEKNLLTQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + E L + E +H + Y++ ++G+ E E + + +
Sbjct: 68 IEVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYD 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ K + L++ ++ K + + L VF EG+ + FA +L+ R
Sbjct: 127 AMRKKYEYMLEFEES---------KKQDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
KM G+ + + RDE+LH N I++ N EN +W EF+++ + LE
Sbjct: 178 FGKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEELYSACRTIVELED 237
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ G GL+A Y+++IANRR Q+GL+ ++ +NP PW+ E+++ +
Sbjct: 238 EFISLAFDLGDVEGLSAEEVRNYIRYIANRRLTQLGLKSIYNVKDNPIPWLDEILNGVEH 297
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE RVTEY + + W+
Sbjct: 298 TNFFENRVTEYSRAATQGTWE 318
>gi|269958883|ref|YP_003328672.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
centrale str. Israel]
gi|269848714|gb|ACZ49358.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
centrale str. Israel]
Length = 332
Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats.
Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 14/324 (4%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF
Sbjct: 15 RPVYKPFYYPWAYDAWLCQQRIHWIPEEVPLADDVQDWKT--KLSEQEKNLLVQIFRFFT 72
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
++ V N + E L + E VH + Y++ ++G+ E E + +
Sbjct: 73 QADIEVNNCYMKHYSNIFKPTEICMMLSAFSNMETVHIAAYSYLLDTIGMPEVE-YQAFL 131
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + K ++ ++ ++ K + + L VF EG+ + FA +L+
Sbjct: 132 KFEVMKKKYDYMQRFEES---------RKGDKRHVAKTLAVFGAFTEGLQLFASFAILLN 182
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
R KM G+ + + RDE+LH I + N EN +W + +
Sbjct: 183 FQRFGKMKGMGQIIAWSARDETLHTESIIRLFNTFIHENQEIWDANLRAELYGACRVIVS 242
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
LE + G GL+A ++Y+++IANRR Q+ LEP++ NP PW+ E+++
Sbjct: 243 LEDEFIDLAFALGDVEGLSASEVKRYIRYIANRRLKQLDLEPIYGDNVNPLPWLDEILNG 302
Query: 330 KKEKNFFETRVTEYQQ-GAELKWD 352
+ NFFE RVTEY + E WD
Sbjct: 303 VEHTNFFENRVTEYSRAATEGTWD 326
>gi|307328555|ref|ZP_07607729.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger
Tu 4113]
gi|306885823|gb|EFN16835.1| Ribonucleoside-diphosphate reductase [Streptomyces violaceusniger
Tu 4113]
Length = 340
Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats.
Identities = 105/334 (31%), Positives = 180/334 (53%), Gaps = 10/334 (2%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D K +L+ ++ L P++Y +++Y A N W EV + D+ L+ E+
Sbjct: 7 DTKNLLDPGFEL-TLRPMRYPEFYDRYRDAIKNTWTVEEVDLHSDVTD---LAKLSPGEQ 62
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
+I R + FFA+ +S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ +
Sbjct: 63 HLIGRLVAFFATGDSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYL 122
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D + F +PSI KA + ++ ++ TK + FL +L F
Sbjct: 123 PDPDDRAAAFAAVENIPSIREKAEFCFRWMDSVEKID-RLETKQDRRRFLLNLICFAACI 181
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++FY FA + L + G+A ++ RDES+H+ F V++ ++ E P L+ E
Sbjct: 182 EGLFFYGAFAYVYWLRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVREEEPDLFDDE 241
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+Q+ ML EA E+ +A + G G+N S ++Y+Q +A++R ++G +F +
Sbjct: 242 LRQQVTDMLKEAVEAELQFARDLCGDGLPGMNTASMQEYLQCVADQRLMRLGFPAVFG-S 300
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
ENPF +M E+ ++++ NFFE R + YQ E
Sbjct: 301 ENPFSFM-ELQNVQELTNFFERRASAYQVAVEGS 333
>gi|283481249|emb|CAZ69365.1| ribonucleoside-diphosphate reductase small chain [Emiliania huxleyi
virus 99B1]
Length = 325
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 97/332 (29%), Positives = 155/332 (46%), Gaps = 28/332 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D L P+ + +E+Y A + W +E+ + D W LT++E+
Sbjct: 3 EPILIENEDRFVLFPIVHEDIYEEYKKAEASLWGVSEIDISTDKTDW---PKLTENEQHF 59
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+++ +V N+V + PE R + Q E VH+ T+ ++ SL D
Sbjct: 60 IKYILAFFATADGVVFENLVTNFASEIQYPEARCFYGVQMMIENVHAETYSMMLQSLVED 119
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LF R + SI KA+WAL++ ++ F + L F VV EG
Sbjct: 120 KDEQRNLFRAIRTIQSIKNKADWALKWMN-------------NERSFAERLIAFAVV-EG 165
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE LH +F + + K
Sbjct: 166 IFFSGAFCAIFWLKKRAIMPGLTFSNELISRDEGLHTDFACMLYRNH------IIHKLPY 219
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ ++ A LE + E +P +G+NA S Y++F+A+R +G + N
Sbjct: 220 ETVLDIITNAVELERLFICEALPVSLIGINAESMSTYIKFVADRLLISLGYAKHYNVV-N 278
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
PF WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 279 PFEWM-ELISLEGKTNFFEKRVGEYQKAGVMD 309
>gi|253827828|ref|ZP_04870713.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
canadensis MIT 98-5491]
gi|313142391|ref|ZP_07804584.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
canadensis MIT 98-5491]
gi|253511234|gb|EES89893.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
canadensis MIT 98-5491]
gi|313131422|gb|EFR49039.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
canadensis MIT 98-5491]
Length = 341
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 96/348 (27%), Positives = 181/348 (52%), Gaps = 14/348 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I +V+++R+ + +L +KY WA+ + N W P EV M D
Sbjct: 4 RKKIYNPSSNESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDK 63
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ +GLT +E++ R L +SL NN++ + ++++PE L+RQAFEEA
Sbjct: 64 RDYA--DGLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEA 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+HS ++ ++ S+ + E+++M+R + AK ++ + + L+ + +
Sbjct: 122 LHSQSYAVMVESISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLA--------TNPIERN 173
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ + EG++FY+GFA +L R+ KM+G A+ ++I RDE HL ++IN +
Sbjct: 174 IIKAMFANQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINSV 233
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E+P L+TK+ +++ M EA +E A+ +GL + ++Y++++A+ R
Sbjct: 234 KKESPELFTKDLEEEVIEMFREAVKVETAWGEYITQGQILGLTSEIIQEYIKYLADERLR 293
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+IGL L+ ++P W+ + + NFFE VT Y +G+ + +D
Sbjct: 294 RIGLPTLYN-AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS-INFD 339
>gi|330467634|ref|YP_004405377.1| ribonucleoside-diphosphate reductase [Verrucosispora maris
AB-18-032]
gi|328810605|gb|AEB44777.1| Ribonucleoside-diphosphate reductase [Verrucosispora maris
AB-18-032]
Length = 342
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 109/334 (32%), Positives = 185/334 (55%), Gaps = 12/334 (3%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L+ D+ L P++Y ++++ A N W EV + DLA L+ E+ ++
Sbjct: 13 LLDPGMDL-TLRPMRYPQFFDRFKDAIRNTWTVEEVDLHADLAD---LAKLSPAEQHLVS 68
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE- 142
R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE
Sbjct: 69 RLVAFFATGDTIVANNLVLNLYQHINSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEK 128
Query: 143 --GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
E F +PSI KA + ++ ++ T+ + FL +L F EG++
Sbjct: 129 QRYEAFAAVENIPSIARKAEFCFKWIDSIFEL-RELKTRADRRAFLLNLICFAACIEGLF 187
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY FA + L + G+A ++ RDES+H+ F DV++ ++ E P L+ E +Q+
Sbjct: 188 FYGAFAYVYFLRSRGVLHGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDAEMEQQ 247
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
R ML EA E+ +A + + +G G+ QY+Q +A+RR +G+ P++ + NPF
Sbjct: 248 VRDMLAEAVDCEVQFAADLLEQGVSGMPLADMRQYLQHVADRRLAMLGIAPMYG-STNPF 306
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
+M E+ D+++ NFFE RV+ YQ G + +D
Sbjct: 307 AFM-ELQDVQELSNFFERRVSAYQVGVTGTVAFD 339
>gi|256825983|ref|YP_003149943.1| ribonucleotide reductase subunit beta [Kytococcus sedentarius DSM
20547]
gi|256689376|gb|ACV07178.1| ribonucleotide reductase, beta subunit [Kytococcus sedentarius DSM
20547]
Length = 365
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 107/325 (32%), Positives = 177/325 (54%), Gaps = 10/325 (3%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E + A N W E+ + DLA N L+ ER ++ R + FFA+
Sbjct: 43 TLRPMRYPQFYEMFRDAIKNTWTVEEIDLHSDLADLH--NKLSPAERHLVSRLVAFFATG 100
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--- 149
+++VANN+VL +Y H+++PE R YL RQ FEEAVH + ++ + DE E F +
Sbjct: 101 DTIVANNLVLNLYEHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYVPDEAERFEAFAAV 160
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA + + ++ + TK+ ++FL +L F EG++FY FA +
Sbjct: 161 ENIPSIRTKAEFCFTWIDSIENLG-QLETKEQRRQFLLNLICFGTCIEGLFFYGAFAYVY 219
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
L + G+A ++ RDES+H+ F +V+ ++ E P L+ E + R ML EA
Sbjct: 220 FLRSRGLLNGLASGTNWVFRDESMHMAFAFEVVETVRSEEPDLFDAEMAGQVRQMLMEAV 279
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E +A + + G GL+ Y++ +A+RR Q+G+ ++ T+NP +M E+ D+
Sbjct: 280 DAEAQFAEDLLGMGVAGLSVADMRAYLENVADRRAVQLGMPEIYG-TKNPLAFM-ELQDV 337
Query: 330 KKEKNFFETRVTEYQQG--AELKWD 352
++ NFFE RV+ YQ G + +D
Sbjct: 338 QELSNFFERRVSAYQVGVEGSVSFD 362
>gi|197103810|ref|YP_002129187.1| ribonucleoside-diphosphate reductase, beta subunit
[Phenylobacterium zucineum HLK1]
gi|196477230|gb|ACG76758.1| ribonucleoside-diphosphate reductase, beta subunit
[Phenylobacterium zucineum HLK1]
Length = 350
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 79/322 (24%), Positives = 140/322 (43%), Gaps = 18/322 (5%)
Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
P +Y WA++ + HWMP E+P+ +DL W S L D ER ++ + FF
Sbjct: 20 FAYKPFRYPWAYDYWKKQQQVHWMPEEIPLGEDLKDWAS--KLNDRERNLLTQIFRFFTQ 77
Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
S+ V +N + R E + L + E +H + ++ ++G+ + E F + +
Sbjct: 78 SDVEVNDNYMERYARVFKPTEVKMMLAAFSNMETIHIAAYALLLETIGMPDAE-FTAFLD 136
Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
++ K ++ + D + + L +F EG+ + FA +++
Sbjct: 137 YQAMRDKHDYMQSF------------GVDTHADICRTLAMFGGFTEGLQLFASFAMLMNF 184
Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
R NKM G+ + + +RDESLH I + + E T+ L
Sbjct: 185 PRHNKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKET-GAVTQAVADDIVDCCKTVVGL 243
Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
E + G G+ +QY++FIA+ R Q+ L ++ ENP PW+ ++
Sbjct: 244 EDKFIDLAFEAGEVQGMTPDDIKQYIRFIADWRLKQLHLPQVYGIKENPLPWLQSMLSGV 303
Query: 331 KEKNFFETRVTEYQQ-GAELKW 351
+ NFFE R TEY + + +W
Sbjct: 304 EHANFFEARATEYSKAATKGQW 325
>gi|313115920|ref|ZP_07801347.1| ribonucleoside-diphosphate reductase, beta subunit
[Faecalibacterium cf. prausnitzii KLE1255]
gi|310621684|gb|EFQ05212.1| ribonucleoside-diphosphate reductase, beta subunit
[Faecalibacterium cf. prausnitzii KLE1255]
Length = 347
Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats.
Identities = 93/350 (26%), Positives = 156/350 (44%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ E +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 7 KPLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L ER + L F +S+ N+ I +++ E L QAF+E V
Sbjct: 67 DY---PRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ + R K + L T + + D L
Sbjct: 123 HSQSYSYMLDTICSP------VERNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T E Q R M+ E EIA+ H + GLN Y++++ N R
Sbjct: 237 KEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 296
Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G L+ W+S+ D + +FFE R T Y + L D
Sbjct: 297 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 346
>gi|310823070|ref|YP_003955428.1| ribonucleoside-diphosphate reductase subunit beta [Stigmatella
aurantiaca DW4/3-1]
gi|309396142|gb|ADO73601.1| Ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
aurantiaca DW4/3-1]
Length = 336
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 105/326 (32%), Positives = 173/326 (53%), Gaps = 9/326 (2%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+LNA ++ L P+ Y +E Y +A N W EV DL +S +TD ER +I
Sbjct: 2 LLNAGMNL-TLRPMAYPVFFEMYRNAIKNTWTVEEVDFSTDLVDLRS--KMTDAERHLIH 58
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + D
Sbjct: 59 RLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLTLLDTYVPDPA 118
Query: 144 ---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ F +PSI KA + L++ ++ + T++ + FL +L F EG++
Sbjct: 119 DRAKAFAAIDNIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLLNLICFAGCIEGLF 177
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
F+ FA + L + G+A ++ RDES H+ F + I + E P L+ Q
Sbjct: 178 FFAAFAYVYFLRSKGLLHGLAAGTNWVFRDESTHMAFAFEAIRVARQEEPDLFDARMQAD 237
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
M+ EA E +A + + G GL+ QY++++A++R +GL P+F+ +N
Sbjct: 238 VVAMMREAVECETLFAQDLLSGGVAGLSVQEMRQYLEYVADQRLTMLGLAPVFRV-KNSL 296
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
P+M + D+++ NFFE RV+ YQ
Sbjct: 297 PFMD-LQDVQELTNFFERRVSAYQVA 321
>gi|224418874|ref|ZP_03656880.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
canadensis MIT 98-5491]
Length = 340
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 96/348 (27%), Positives = 181/348 (52%), Gaps = 14/348 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I +V+++R+ + +L +KY WA+ + N W P EV M D
Sbjct: 3 RKKIYNPSSNESVNERRIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQDK 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ +GLT +E++ R L +SL NN++ + ++++PE L+RQAFEEA
Sbjct: 63 RDYA--DGLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEA 120
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+HS ++ ++ S+ + E+++M+R + AK ++ + + L+ + +
Sbjct: 121 LHSQSYAVMVESISANTDEIYDMWRSDMQLKAKNDYIAEVYEQLA--------TNPIERN 172
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ + EG++FY+GFA +L R+ KM+G A+ ++I RDE HL ++IN +
Sbjct: 173 IIKAMFANQILEGIYFYSGFAFFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINSV 232
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E+P L+TK+ +++ M EA +E A+ +GL + ++Y++++A+ R
Sbjct: 233 KKESPELFTKDLEEEVIEMFREAVKVETAWGEYITQGQILGLTSEIIQEYIKYLADERLR 292
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+IGL L+ ++P W+ + + NFFE VT Y +G+ + +D
Sbjct: 293 RIGLPTLYN-AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS-INFD 338
>gi|15892574|ref|NP_360288.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
conorii str. Malish 7]
gi|34580440|ref|ZP_00141920.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
sibirica 246]
gi|157828524|ref|YP_001494766.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. 'Sheila Smith']
gi|165933242|ref|YP_001650031.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. Iowa]
gi|229586746|ref|YP_002845247.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
africae ESF-5]
gi|238650260|ref|YP_002916112.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
peacockii str. Rustic]
gi|15619738|gb|AAL03189.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia conorii
str. Malish 7]
gi|28261825|gb|EAA25329.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
sibirica 246]
gi|157801005|gb|ABV76258.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
rickettsii str. 'Sheila Smith']
gi|165908329|gb|ABY72625.1| ribonucleoside-diphosphate reductase beta chain [Rickettsia
rickettsii str. Iowa]
gi|228021796|gb|ACP53504.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia africae
ESF-5]
gi|238624358|gb|ACR47064.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
peacockii str. Rustic]
Length = 328
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 89/321 (27%), Positives = 151/321 (47%), Gaps = 17/321 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++
Sbjct: 10 YKPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + R E L + E VH + +++ ++G+ E E ++ + +
Sbjct: 68 IEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K ++ Q+ DA ++ L VF EG+ + FA +L+ R
Sbjct: 127 EMKDKYDYMQQF------------GVDAKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDE+LH N I + ENP +WT+ +++ E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE R TEY + W+
Sbjct: 295 TNFFENRTTEYSKAATTGSWE 315
>gi|31322342|gb|AAP15464.1| ribonucleotide reductase small subunit [Rickettsia rickettsii str.
'Sheila Smith']
Length = 336
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 90/327 (27%), Positives = 153/327 (46%), Gaps = 21/327 (6%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK------SKNGLTDDERLMIKRNLG 87
P Y WA+E + + HW+P EVP+ DD+ WK K+ LT E+ ++ +
Sbjct: 10 YKPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWKYNLTPGEKHLLTPGEKHLLTQIFR 69
Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147
FF ++ V N + R E L + E VH + +++ ++G+ E E ++
Sbjct: 70 FFTQADIEVNNCYMKHYSRVFKPTEILMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YS 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ + + K ++ Q+ DA ++ L VF EG+ + FA
Sbjct: 129 AFLKYKEMKDKYDYMQQF------------GVDAKEDIATTLAVFGAFTEGLQLFASFAI 176
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+L+ R NKM G+ + + +RDE+LH N I + ENP +WT+ +++
Sbjct: 177 MLNFPRFNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTT 236
Query: 268 ATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
E A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+
Sbjct: 237 IVHFEDAFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEM 296
Query: 327 IDLKKEKNFFETRVTEYQQ-GAELKWD 352
++ + NFFE R TEY + W+
Sbjct: 297 LNGVEHTNFFENRTTEYSKAATTGSWE 323
>gi|157953769|ref|YP_001498660.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella
virus AR158]
gi|156068417|gb|ABU44124.1| hypothetical protein AR158_C579R [Paramecium bursaria Chlorella
virus AR158]
Length = 324
Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats.
Identities = 97/334 (29%), Positives = 164/334 (49%), Gaps = 29/334 (8%)
Query: 21 DKRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ +L+ P++Y W+ Y A W EVP+ D+ W+ L DDER
Sbjct: 4 QEPILSDNGSRKFSAFPIQYPDMWDMYKKAVATFWTTEEVPLNADVVDWRE--KLNDDER 61
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
IK LGFFA S+ +V N+ ++ PE RQ+ Q F E++HS + +I +L
Sbjct: 62 HFIKHILGFFAGSDGIVMENLQTNFSVEVTVPEARQFYAYQTFNESIHSEQYALLIDALI 121
Query: 140 LDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
DE ELF+ +P++ KA WA ++ + + F + L + V
Sbjct: 122 SDEQERNELFDAIENIPAVHNKAKWAQKWLE-------------PGKSFAERLVAW-VCV 167
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG+ F F I L M G+ ++I RDE LH FG + ++++ + P
Sbjct: 168 EGILFSGSFCAIFWLRNKGVMPGLGLSNEFISRDEGLHQQFGELMYSKLQNKLPF----- 222
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ + ++ EA E + + +P +G+N+ QY++F+A+R +G E ++ +
Sbjct: 223 --ETVKQIITEAVENEKEFICDAIPCRLIGMNSELMGQYIEFVADRIFIALGYEKVYN-S 279
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+NPF +M E+I L+ + NFFE RV++YQ+ +K
Sbjct: 280 KNPFAFM-ELISLQGKTNFFEKRVSDYQRPGVMK 312
>gi|302542646|ref|ZP_07294988.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
hygroscopicus ATCC 53653]
gi|302460264|gb|EFL23357.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
himastatinicus ATCC 53653]
Length = 343
Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 101/325 (31%), Positives = 174/325 (53%), Gaps = 11/325 (3%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +++Y A N W EV + D+A L+ E+ MI R + FFA+
Sbjct: 22 TLRPMRYPQFYDRYRDAIKNTWTVEEVDLHSDVAD---LAKLSPGEQHMISRLVAFFATG 78
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL---FNMY 149
+S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 79 DSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAASFAAV 138
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA + ++ ++ +K + FL +L F EG++FY FA +
Sbjct: 139 ENIPSIREKAEFCFRWMDSVEKID-RLESKADRRRFLLNLICFAACIEGLFFYGAFAYVY 197
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDES+H+ F V++ ++ E P L+ + +++ ML EA
Sbjct: 198 WFRSRGLLHGLATGTNWVFRDESMHMEFAFSVVDTVREEEPDLFDDDLERQVTDMLKEAV 257
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +AH+ G G+N S Y++ +A++R ++G +F +ENPF +M E+ D+
Sbjct: 258 EAELQFAHDLCGDGLPGMNTESMRAYLECVADQRLARLGFPAVFG-SENPFSFM-ELQDV 315
Query: 330 KKEKNFFETRVTEYQQG--AELKWD 352
++ NFFE R + YQ + +D
Sbjct: 316 QELTNFFERRASAYQVAVEGSVSFD 340
>gi|313844096|ref|YP_004061759.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1]
gi|312599481|gb|ADQ91503.1| hypothetical protein OlV1_126 [Ostreococcus lucimarinus virus OlV1]
Length = 408
Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats.
Identities = 91/339 (26%), Positives = 156/339 (46%), Gaps = 28/339 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
V + + +L + + PLKY WE Y A ++W EV + DL WK+ L +
Sbjct: 88 VEEEYEPLLAPTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 144
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+E+ IK L FFA S+ +V NI + + E R + Q E VH T+ +I
Sbjct: 145 NEKKFIKYILAFFAGSDGIVFENINNNFADEVQSSEARSFYAYQCHNEMVHGETYSKLID 204
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
D E LF + VP I KA+WA+++ D + +
Sbjct: 205 KYIKDGAEKKQLFEAIQTVPCIQKKADWAMKW-------------FDTKSRSFAERLFAF 251
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F F I L + M G+ + I RDE LH F +++ ++
Sbjct: 252 ACVEGIFFSGSFCAIYWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKLLR------- 304
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
K + +++ EA +E + + +P +G+N+ +Y++++++R QIG+ P++
Sbjct: 305 IKPTTETIHSIVKEAVEIEKGFILDALPCALIGMNSEKMSEYIEYVSDRLLKQIGVPPIW 364
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
++NPF +M E I L + NFFE RV +Y + + +
Sbjct: 365 N-SKNPFDFM-ENISLDGKTNFFEKRVGDYGKMDDTSDE 401
>gi|295103295|emb|CBL00839.1| Ribonucleotide reductase, beta subunit [Faecalibacterium
prausnitzii SL3/3]
Length = 347
Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats.
Identities = 93/350 (26%), Positives = 156/350 (44%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ E +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 7 KPLFNPEGDPDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L ER + L F +S+ N+ I +++ E L QAF+E V
Sbjct: 67 DY---PRLLSTERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ + R K + L T + + D L
Sbjct: 123 HSQSYSYMLDTICSP------VERNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T E Q R M+ E EIA+ H + GLN Y++++ N R
Sbjct: 237 KEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 296
Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G L+ W+S+ D + +FFE R T Y + L D
Sbjct: 297 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 346
>gi|18311342|ref|NP_563276.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
perfringens str. 13]
gi|110801267|ref|YP_697050.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
perfringens ATCC 13124]
gi|168205189|ref|ZP_02631194.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens E str. JGS1987]
gi|168210336|ref|ZP_02635961.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens B str. ATCC 3626]
gi|168213271|ref|ZP_02638896.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens CPE str. F4969]
gi|168216675|ref|ZP_02642300.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens NCTC 8239]
gi|169347055|ref|ZP_02865997.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens C str. JGS1495]
gi|182625797|ref|ZP_02953564.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens D str. JGS1721]
gi|18146026|dbj|BAB82066.1| ribonucleoside-diphosphate reductase beta subunit [Clostridium
perfringens str. 13]
gi|110675914|gb|ABG84901.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens ATCC 13124]
gi|169296738|gb|EDS78867.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens C str. JGS1495]
gi|170663363|gb|EDT16046.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens E str. JGS1987]
gi|170711548|gb|EDT23730.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens B str. ATCC 3626]
gi|170715235|gb|EDT27417.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens CPE str. F4969]
gi|177908953|gb|EDT71440.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens D str. JGS1721]
gi|182381151|gb|EDT78630.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens NCTC 8239]
Length = 344
Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats.
Identities = 105/347 (30%), Positives = 170/347 (48%), Gaps = 13/347 (3%)
Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
P+ + + K+M+N + ++N +KY W E Y A NN W+P E+ + DL
Sbjct: 7 PLFNEFGDIETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKD 66
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
+K LT +E+ + L F +S+ N + I +++ E L QAF+EAVH
Sbjct: 67 YK---KLTKEEKTAYDKILSFLIFLDSIQTAN-LGNINSYITASEVNLCLTIQAFQEAVH 122
Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
S ++ Y++ S+ E R K + L + +D+ E
Sbjct: 123 SQSYSYMLDSICSPEE------RNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSMENFI 176
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+ + EG++FY+GF +L R KM G A++ +YI RDE+ HL +I ++K
Sbjct: 177 KSVMANYILEGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKE 236
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
E P ++TKE +++ R M+ EIA+ H + G+N E+Y+++I N R I
Sbjct: 237 EIPEVFTKELKEELREMVRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRVKAI 296
Query: 308 GLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
GLEPLF+ Y ENP PW+ D + + +FFE + T Y + L D
Sbjct: 297 GLEPLFEGYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGALIDD 343
>gi|42520108|ref|NP_966023.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|58696705|ref|ZP_00372253.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Drosophila simulans]
gi|58698234|ref|ZP_00373154.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Drosophila ananassae]
gi|225630036|ref|YP_002726827.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp.
wRi]
gi|42409845|gb|AAS13957.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|58535261|gb|EAL59340.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Drosophila ananassae]
gi|58537117|gb|EAL60231.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Drosophila simulans]
gi|225592017|gb|ACN95036.1| ribonucleotide-diphosphate reductase beta subunit [Wolbachia sp.
wRi]
Length = 329
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 87/321 (27%), Positives = 154/321 (47%), Gaps = 14/321 (4%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA++ +L HW+P EVP+ DD+ WK+ L+ E+ ++ + FF ++
Sbjct: 10 YKPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSSVEKNLLTQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + E L + E +H + Y++ ++G+ E E + + +
Sbjct: 68 IEVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYD 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ K + L++ ++ K + + L VF EG+ + FA +L+ R
Sbjct: 127 AMRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
KM G+ + + RDE+LH N I + N EN +W EF+++ + LE
Sbjct: 178 FGKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELED 237
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ G GL+A Y++++ANRR Q+GLE ++ +NP PW+ E+++ +
Sbjct: 238 EFIKLAFDLGDVEGLSAEEVRNYIRYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEH 297
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE RVTEY + + W+
Sbjct: 298 TNFFENRVTEYSRAATQGTWE 318
>gi|318060206|ref|ZP_07978929.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actG]
gi|318077113|ref|ZP_07984445.1| Ribonucleoside-diphosphate reductase [Streptomyces sp. SA3_actF]
gi|333024515|ref|ZP_08452579.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptomyces sp. Tu6071]
gi|332744367|gb|EGJ74808.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptomyces sp. Tu6071]
Length = 345
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 98/325 (30%), Positives = 174/325 (53%), Gaps = 11/325 (3%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D++ LT E+ +I R + FFA+
Sbjct: 24 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVSD---LAKLTPGEQHLIGRLVAFFATG 80
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 81 DSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 140
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI AKA + ++ + ++ + FL +L F EG++FY FA +
Sbjct: 141 ENIPSIRAKAEFCFKWIDEVEKID-RLESRSDRRRFLLNLICFAACIEGLFFYGAFAYVY 199
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H++F DV++ ++ E P L+ + + + + ML A
Sbjct: 200 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLEAEVKEMLAGAV 259
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + G G+N S +Y+Q +A++R ++G P++ + NPF +M E+ +
Sbjct: 260 DAELQFARDLCGDGLPGMNTESMREYLQCVADQRLVRLGFSPVYG-SSNPFSFM-ELQGV 317
Query: 330 KKEKNFFETRVTEYQQG--AELKWD 352
++ NFFE R + YQ + +D
Sbjct: 318 QELTNFFERRPSAYQVAVEGSVSFD 342
>gi|315497476|ref|YP_004086280.1| ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB
48]
gi|315415488|gb|ADU12129.1| Ribonucleoside-diphosphate reductase [Asticcacaulis excentricus CB
48]
Length = 350
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 85/320 (26%), Positives = 143/320 (44%), Gaps = 18/320 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P +Y WA++ + HW+P EVP+ +D+ W S L D+ER ++ + FF S+
Sbjct: 21 YKPFRYPWAFDFWQKQQQVHWLPEEVPLGEDVKDWAS--KLNDNERNLLTQIFRFFTQSD 78
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V +N + R E + L A E VH + ++ ++G+ E E F + E
Sbjct: 79 IEVQDNYMEKYGRVFKPTEIKMMLSAFANMETVHIAAYALLLETIGMPEAE-FGAFMEYE 137
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ K N+ ++ D D + + L +F EG+ + FA +++ R
Sbjct: 138 AMRDKHNFMQKF------------GVDTDADICRTLAMFGGFTEGLQLFASFAMLMNFPR 185
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDESLH I + + E TK LE
Sbjct: 186 FNKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKET-GAVTKAVADDIVDCCKTVVSLED 244
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ + G G+ +QY+++IA+ R Q+ L +F ENP PW+ ++ +
Sbjct: 245 KFIDLSFEMGPVEGMTPDDIKQYIRYIADWRLRQLELPEVFGVQENPLPWLQVLLSGVEH 304
Query: 333 KNFFETRVTEYQQ-GAELKW 351
NFFE R TEY + + W
Sbjct: 305 ANFFEARATEYSKAATKGSW 324
>gi|62866936|gb|AAY17359.1| ribonucleotide reductase small subunit [Haemonchus contortus]
Length = 374
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 89/334 (26%), Positives = 156/334 (46%), Gaps = 23/334 (6%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+++ +L + + PLKY W Y A + W EV + D+A W+ +TD+ER
Sbjct: 48 EEEPLLRENPNRFVIFPLKYHDIWAFYKKAVASFWTVEEVDLAKDMADWE---KMTDNER 104
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + + PE R + Q E +HS + +I +
Sbjct: 105 FFISRVLAFFAASDGIVNENLVERFSKEVQVPEARFFYGSQIAIENIHSEMYSKLIETYI 164
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
DE E LFN EVP I KA WA++ G + F + + F V
Sbjct: 165 RDEKERNILFNAIFEVPCIAKKAEWAVK-----------MGLQTITAPFAERVIAFAAVG 213
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
++ A S + G + + + + + G+ I+ + H+ K
Sbjct: 214 GNIFSLGPVAIPFSGLKKK---GDWRGWSHSILRSLIQGDEGVHAISHVCCIQ-HIKNKL 269
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
Q++ ++ +A +E + E++P +G+N QY++++A+ ++G E + K +
Sbjct: 270 SQERIYYIIRDAVAIEQEFLSESLPVDMIGMNCRLMCQYIEYVADHLLVELGCEKICK-S 328
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+NPF +M E I + + NFFE +V+EYQ+ L
Sbjct: 329 KNPFDFM-ENISIDGKTNFFEKKVSEYQRPGVLS 361
>gi|110802082|ref|YP_699620.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
perfringens SM101]
gi|110682583|gb|ABG85953.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
perfringens SM101]
Length = 344
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 105/347 (30%), Positives = 170/347 (48%), Gaps = 13/347 (3%)
Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
P+ + + K+M+N + ++N +KY W E Y A NN W+P E+ + DL
Sbjct: 7 PLFNEFGDIETNKKKMINGNTTNLNDFNNMKYTWVSEWYRQAMNNFWIPEEINLAQDLKD 66
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
+K LT +E+ + L F +S+ N + I +++ E L QAF+EAVH
Sbjct: 67 YK---KLTKEEKAAYDKILSFLIFLDSIQTAN-LGNINSYITASEVNLCLTIQAFQEAVH 122
Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
S ++ Y++ S+ E R K + L + +D+ E
Sbjct: 123 SQSYSYMLDSICSPEE------RNEILFQWKDDAILLQRNKFIGDLYNNFLEDSSIENFI 176
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+ + EG++FY+GF +L R KM G A++ +YI RDE+ HL +I ++K
Sbjct: 177 KSVMANYILEGVYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRSIIKELKE 236
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
E P ++TKE +++ R M+ EIA+ H + G+N E+Y+++I N R I
Sbjct: 237 EIPEVFTKELKEELREMMRTGVEHEIAWGHYVIGDNVTGINKNLIERYIKYIGNLRAKAI 296
Query: 308 GLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
GLEPLF+ Y ENP PW+ D + + +FFE + T Y + L D
Sbjct: 297 GLEPLFEGYNENPAPWVDYYADANQVKTDFFEAKSTAYAKAGALIDD 343
>gi|302521843|ref|ZP_07274185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. SPB78]
gi|302430738|gb|EFL02554.1| ribonucleoside-diphosphate reductase, beta subunit [Streptomyces
sp. SPB78]
Length = 345
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 98/325 (30%), Positives = 174/325 (53%), Gaps = 11/325 (3%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D++ LT E+ +I R + FFA+
Sbjct: 24 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVSD---LAKLTPGEQHLIGRLVAFFATG 80
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+V+NN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 81 DSIVSNNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPDDRAAAFAAV 140
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI AKA + ++ + ++ + FL +L F EG++FY FA +
Sbjct: 141 ENIPSIRAKAEFCFKWIDEVEKID-RLESQSDRRRFLLNLICFAACIEGLFFYGAFAYVY 199
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H++F DV++ ++ E P L+ + + + + ML A
Sbjct: 200 WFRSRGLLHGLATGTNWVFRDETMHMSFAFDVVDTVRKEEPELFDDKLEAEVKEMLAGAV 259
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + G G+N S +Y+Q +A++R ++G P++ + NPF +M E+ +
Sbjct: 260 DAELQFARDLCGDGLPGMNTESMREYLQCVADQRLVRLGFSPVYG-SSNPFSFM-ELQGV 317
Query: 330 KKEKNFFETRVTEYQQG--AELKWD 352
++ NFFE R + YQ + +D
Sbjct: 318 QELTNFFERRPSAYQVAVEGSVSFD 342
>gi|296282225|ref|ZP_06860223.1| ribonucleotide-diphosphate reductase subunit beta [Citromicrobium
bathyomarinum JL354]
Length = 354
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 81/323 (25%), Positives = 152/323 (47%), Gaps = 18/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y WA++ + HWMP EVP+ +D W L++ ER ++ + FF
Sbjct: 7 RKTYKPFEYPWAYDFWKRQQQVHWMPEEVPLGEDCRDWAQ--KLSEHERNLLTQIFRFFT 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
++ V + R E + L + E +H + +++ ++G+ E E + M+
Sbjct: 65 QADVEVQDCYHEKYGRVFKPTEIKMMLASFSNMETIHIAAYSHLLDTIGMPESE-YGMFL 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + K ++ Q+ D D++ + L F EGM + FA +++
Sbjct: 124 EYEEMKDKHDYLQQF------------GVDTDEDIARTLAAFGGFTEGMQLFASFAMLMN 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
R NKM G+ + + +RDESLH I + ++ E +TK ++ + ++
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDESLHCEGIIRLFHEFVRERD-CYTKAVKEDIIDICQKSVR 230
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
LE + G G+ A ++Y+++IA+ R Q+GL+P++ E+P PW++ +++
Sbjct: 231 LEDNFIDLAFEMGPVSGMTAKEIKKYIRYIADWRLGQLGLQPIYMIDEHPLPWLTPLLNG 290
Query: 330 KKEKNFFETRVTEYQQ-GAELKW 351
+ NFFE R TEY + + W
Sbjct: 291 VEHANFFEQRATEYSKGATKGDW 313
>gi|254418345|ref|ZP_05032069.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas
sp. BAL3]
gi|196184522|gb|EDX79498.1| ribonucleoside-diphosphate reductase, beta subunit [Brevundimonas
sp. BAL3]
Length = 349
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 82/320 (25%), Positives = 142/320 (44%), Gaps = 18/320 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P +Y WA++ + HWMP EVP+ +D+ W S L D+ER ++ + FF ++
Sbjct: 22 YKPFRYPWAFDMWKKQQQVHWMPEEVPLGEDVKDWAST--LNDNERNLLTQIFRFFTQAD 79
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V +N + R E + L E +H + ++ ++G+ E E F + E
Sbjct: 80 IEVQDNYMERYGRVFKPTEIKMMLAAFGNMETIHIAAYALLLETIGMPESE-FGAFMEYE 138
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ K ++ Q+ D+D + + L +F EG+ + FA +++ R
Sbjct: 139 AMRDKHDYMGQF------------GVDSDADICRTLAMFGGFSEGVQLFASFAMLMNFPR 186
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDESLH I + + E TK +E
Sbjct: 187 QNKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKET-GAVTKAVADDIVDCCKTVVNMED 245
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ G G+ +QY++FIA+ R Q+ L ++ ENP PW+ ++ +
Sbjct: 246 RFIDLAFEMGSVQGMTPEDIKQYIRFIADWRLRQLKLPEVYGVKENPLPWLQSLLSGVEH 305
Query: 333 KNFFETRVTEYQQ-GAELKW 351
NFFE R TEY + + W
Sbjct: 306 ANFFEARATEYSKAATQGNW 325
>gi|317472120|ref|ZP_07931452.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA]
gi|316900524|gb|EFV22506.1| ribonucleotide reductase [Anaerostipes sp. 3_2_56FAA]
Length = 347
Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats.
Identities = 89/350 (25%), Positives = 161/350 (46%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ +V +RM+N + ++N +KY W Y A NN W+P E+ + D+
Sbjct: 7 KPLFNPYGDTDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIK 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+K L++ ER + L F +S+ N+ I +++ E L QAF+EAV
Sbjct: 67 DYKQ---LSEPERRAYDKILSFLIFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ R K + L + + + E
Sbjct: 123 HSQSYSYMLDTICEP------QERNDILYQWKNDPHLLERNQFIGDLYNDFQTNKNTETF 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
V + EG++FY+GF +LGR ++M G ++ +YI RDE+ HL +++ ++K
Sbjct: 177 VKTLVANYILEGIYFYSGFMFFYNLGRNHRMPGSVQEIRYINRDENTHLWLFKNILLELK 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+ + R M+ + EI + H + GL E+Y++++ N RC
Sbjct: 237 KEEPSLFHPDCINDYRRMIKKGCEQEIRWGHYVIGDEIQGLKKEMVEEYIRYLGNLRCQN 296
Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G EP++ +E W+S+ + + +FFE + T Y + + L D
Sbjct: 297 LGFEPIYPGSETEPESMSWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 346
>gi|266623614|ref|ZP_06116549.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
hathewayi DSM 13479]
gi|288864591|gb|EFC96889.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
hathewayi DSM 13479]
Length = 346
Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats.
Identities = 96/351 (27%), Positives = 163/351 (46%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
P+ + +V ++RM+ + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 6 RKPLFNPDGDTDVRNRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWVPEEINLGPDV 65
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ L ER + L F +S+ N+ AI +++ E L Q F+EA
Sbjct: 66 KDY---PMLDAGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQTFQEA 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ ++ R K + L T + KD
Sbjct: 122 VHSQSYSYMLDTICEP------QTRNEVLYQWKNDEHLLARNTFIGNLYNEFQKDKSPFT 175
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
V + EG++FY+GF +LGR +KM G A++ +YI RDE+ HL ++I ++
Sbjct: 176 FMKTVVANFILEGVYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFRNMILEL 235
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E P L+T + R M+ E EIA+ H + GL Y+Q++ N RC
Sbjct: 236 KNEEPELFTPDRVDVYREMIKEGCRQEIAWGHYAIGDKVPGLTKDMITDYIQYLGNLRCM 295
Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G EP+++ + + P W+S+ + + +FFE R T Y + + L D
Sbjct: 296 SLGFEPIYEGHEKEPESMAWVSQYSNANMIKTDFFEARSTAYAKSSALVDD 346
>gi|291562343|emb|CBL41159.1| Ribonucleotide reductase, beta subunit [butyrate-producing
bacterium SS3/4]
Length = 346
Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 156/350 (44%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ E ++V +RM+ + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 6 KPLFNPEGNLDVRLRRMIGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 65
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L ER + L F +S+ N+ I +++ E L QAF+E V
Sbjct: 66 DY---PRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECV 121
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ + R K + L T + + D L
Sbjct: 122 HSQSYSYMLDTICSP------VERNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 175
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++
Sbjct: 176 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 235
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T Q R M+ E EIA+ H + GLN Y++++ N R
Sbjct: 236 KEQPELFTAGSVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 295
Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G L+ W+S+ D + +FFE R T Y + L D
Sbjct: 296 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 345
>gi|290343623|ref|YP_003494990.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1]
gi|260161038|emb|CAY39739.1| hypothetical protein OTV1_151 [Ostreococcus tauri virus 1]
Length = 389
Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats.
Identities = 91/339 (26%), Positives = 152/339 (44%), Gaps = 31/339 (9%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
V + + +L + + + PLKY WE Y A ++W EV + DL WK+ L +
Sbjct: 69 VEEEYEPILASTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 125
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+E+ IK L FFA S+ +V NI + E R + Q E VH T+ +I
Sbjct: 126 NEQKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLID 185
Query: 137 SLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
D ELF + VP I KA WA+++ D + +
Sbjct: 186 KYIKDPSEKKELFEAIQTVPCIEKKAQWAMKW-------------FDTKSRSFAERLFAF 232
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F F I L + M G+ + I RDE LH F +++ ++
Sbjct: 233 ACVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLRN------ 286
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+ ++ EA +E + + +P +G+N+ +Y++++++R QIG+ ++
Sbjct: 287 -RPGVDTIHAIVREAVDIEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQIGVPTIW 345
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
++NPF +M E I L + NFFE RV +Y +L D
Sbjct: 346 N-SKNPFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 379
>gi|15604372|ref|NP_220888.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
prowazekii str. Madrid E]
gi|51473694|ref|YP_067451.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia typhi
str. Wilmington]
gi|3861064|emb|CAA14964.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (nrdB) [Rickettsia
prowazekii]
gi|51460006|gb|AAU03969.1| Ribonucleotide reductase [Rickettsia typhi str. Wilmington]
gi|292572126|gb|ADE30041.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia
prowazekii Rp22]
Length = 324
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 87/321 (27%), Positives = 149/321 (46%), Gaps = 17/321 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA+E + + HW+P EVP+ D+ WK LT E+ ++ + FF ++
Sbjct: 10 YKPFSYPWAYEAWHTQQKIHWLPEEVPLAYDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + R E L + E VH + +++ ++G+ E E ++ + +
Sbjct: 68 IEVNNCYMKHYSRVFKPTEVLMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K ++ Q+ D ++ L VF EG+ + FA +L+ R
Sbjct: 127 EMKDKYDYMQQF------------GVDNKEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDE+LH N I + ENP +WT+ +++ E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTETLRKRIYEACTTIVHFED 234
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
A+ G GL A QY+++IA+RR Q+GL+ ++ NP PW+ E+++ +
Sbjct: 235 AFIELAFEVGGIEGLTAYEVRQYIRYIADRRLMQLGLKDVYLVNHNPLPWLDEMLNGVEH 294
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE R TEY + W+
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|308485547|ref|XP_003104972.1| hypothetical protein CRE_24501 [Caenorhabditis remanei]
gi|308257293|gb|EFP01246.1| hypothetical protein CRE_24501 [Caenorhabditis remanei]
Length = 323
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 92/333 (27%), Positives = 156/333 (46%), Gaps = 28/333 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + P+++ W Y A + W EV + D+A W+ L+ DE+
Sbjct: 4 EPLLVESGIRFVIYPIEHHDIWSFYKKALASFWTTEEVDVGKDMADWE---RLSADEKKF 60
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+S+ +V N+ + E R + Q E +HS T+ +I + D
Sbjct: 61 ISTVLAFFAASDGIVVENLCSRFANEVKIVEARFFYGFQIAVENIHSETYAKLIETYIKD 120
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E LF+ + I KA+WAL++ ++SP F L F V EG
Sbjct: 121 ERERLVLFDAIKNFEFIKKKADWALRWISDMTSP------------FAHRLVAFAAV-EG 167
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + + G+ + I RDE LH +F + +I K +
Sbjct: 168 IFFSGSFASIFWLKKRGLLPGLTHSNELISRDEGLHRDFACLLFTKIV-------DKPSR 220
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ ++ EA +E+ + + +P +G+N QY++++A+ ++G E L+ +T N
Sbjct: 221 EIVCEIVDEAVTIELEFLDQALPVNVIGMNYTLMSQYIKYVADHLLEELGFEKLY-HTIN 279
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
PF +M E I + + NFFE RV+EYQ+ +
Sbjct: 280 PFDFM-ENISIDGKTNFFEKRVSEYQRSGVMAD 311
>gi|167760514|ref|ZP_02432641.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704]
gi|167661880|gb|EDS06010.1| hypothetical protein CLOSCI_02888 [Clostridium scindens ATCC 35704]
Length = 347
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 93/350 (26%), Positives = 162/350 (46%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ V+ +RM+ + ++N +KY W + Y A NN W+P E+ M D+
Sbjct: 7 KPLFNPSGDTQVNKRRMIGGNTTNLNDFNNMKYDWVSDWYRQAMNNFWIPEEINMGVDIK 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
++ L ER + L F +S+ N+ I +++ E L Q F+EAV
Sbjct: 67 DYR---KLPQAERRAYDKILSFLIFLDSIQTANLP-NIGEYITANEVNLCLSIQTFQEAV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ R K + L + K D L
Sbjct: 123 HSQSYSYMLDTICEP------QERNDVLYQWKEDQHLLKRNEFIGNLYNEFQKKKDAGVL 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
V + EG++FY+GF +LGR N+M G ++ +YI RDE+ HL +++ ++K
Sbjct: 177 VKTLVANYILEGIYFYSGFMFFYNLGRNNRMPGSVQEIRYINRDENTHLWLFRNILLELK 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T+ ++ R M+ E EI++ H + GLN Y+Q++ N RC
Sbjct: 237 KEEPQLFTESRIEEYREMIKEGCQQEISWGHYVIGDDIQGLNRDMVTDYIQYLGNLRCTN 296
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G P+++ + + P W+S+ + + +FFE R T Y + + L D
Sbjct: 297 LGFAPIYEGHVKEPDSMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346
>gi|291303011|ref|YP_003514289.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis
DSM 44728]
gi|290572231|gb|ADD45196.1| Ribonucleoside-diphosphate reductase [Stackebrandtia nassauensis
DSM 44728]
Length = 338
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 102/333 (30%), Positives = 177/333 (53%), Gaps = 10/333 (3%)
Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
R+L+ D+ L P++Y +E++ +A N W EV + DL + TD ER +I
Sbjct: 8 RLLDPGMDL-TLRPMRYPDFYEQFRAAIRNTWTVEEVDLASDLPDLATF---TDSERHLI 63
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
R + FFA+ +++VANN+VL +Y+H++ PE R YL RQ +EEAVH + ++ + D
Sbjct: 64 NRLVAFFATGDTIVANNLVLNLYKHVNAPEARLYLSRQLYEEAVHVQFYLTLLDTYLPDP 123
Query: 143 G---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
+ F +PSI KA + ++ T+ T + + FL +L F EG+
Sbjct: 124 EDRVKAFAAVEHIPSIKEKAEFCFKWIDTIDQLD-ELRTPEDRRAFLLNLICFAACIEGL 182
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
+FY FA + L + G+A ++ RDES H+NF V++ ++ E P L+ E +
Sbjct: 183 FFYGAFAYVYWLRSRGLLDGLATGTNWVFRDESCHMNFAFSVVDVVRNEEPELFDDELTE 242
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
M+ EA E+ +A + +G G+ + Y++++A++R ++G+ + ++NP
Sbjct: 243 AVTRMIEEAVAAELQFARDLCGEGMPGMTVNDMKSYLEYVADQRLTRLGMPVRYG-SKNP 301
Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
F +M+ + D+++ NFFE R T YQ D
Sbjct: 302 FGFMA-LQDVQELTNFFERRPTAYQVAVGGTVD 333
>gi|58584525|ref|YP_198098.1| ribonucleotide-diphosphate reductase subunit beta [Wolbachia
endosymbiont strain TRS of Brugia malayi]
gi|58418841|gb|AAW70856.1| Ribonucleotide reductase, beta subunit [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 331
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 88/321 (27%), Positives = 154/321 (47%), Gaps = 14/321 (4%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA++ +L HW+P EVP+ DD+ WK L + E+ ++ + FF ++
Sbjct: 10 YKPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWK--IKLLNVEKNLLTQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + E L + E +H + Y++ ++G+ E E + + +
Sbjct: 68 IEVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYD 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ K + L++ ++ K + + L VF EG+ + FA +L+ R
Sbjct: 127 AMRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
KM G+ + + RDE+LH N I++ N EN +W EF++ + LE
Sbjct: 178 FGKMKGMGQIIAWSARDETLHTNSIINLFNTFIKENNEIWNDEFKEGLYSACRTIVGLED 237
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ G GL+A Y+++IANRR Q+GL+P++ +NP PW+ E+++ +
Sbjct: 238 EFIKLAFDLGDVEGLSAEEVRNYIRYIANRRLMQLGLKPIYDINDNPLPWLDEILNGVEH 297
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE RVTEY + + W+
Sbjct: 298 TNFFENRVTEYSRAATQGTWE 318
>gi|302867100|ref|YP_003835737.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029]
gi|315506490|ref|YP_004085377.1| ribonucleotide reductase [Micromonospora sp. L5]
gi|302569959|gb|ADL46161.1| ribonucleotide reductase [Micromonospora aurantiaca ATCC 27029]
gi|315413109|gb|ADU11226.1| ribonucleotide reductase [Micromonospora sp. L5]
Length = 342
Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 107/334 (32%), Positives = 187/334 (55%), Gaps = 12/334 (3%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L+ D+ L P++Y ++++ A N W EV + DLA L+ ER ++
Sbjct: 13 LLDPGMDL-TLRPMRYPRFFDRFKDAIKNTWTVEEVDLHSDLAD---LAKLSPAERHLVS 68
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + DE
Sbjct: 69 RLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPDEK 128
Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
E F+ +PSI KA + ++ ++ T+ + FL +L F EG++
Sbjct: 129 ERFAAFDAVENIPSIARKAEFCFRWIDSIFEL-RELRTRADRRAFLLNLICFAACIEGLF 187
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY FA + L + G+A ++ RDES+H+ F DV+ ++ E P L+ E +++
Sbjct: 188 FYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFAFDVVETVRAEEPDLFDDEMERQ 247
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
+ ML EA E+++A + + +G G++ +Y+Q +A+RR +G+ P++ + NPF
Sbjct: 248 VKEMLAEAVECEVSFAEDLLGQGVPGMSLADMREYLQHVADRRLAVLGIAPMYG-SGNPF 306
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
+M E+ D+++ NFFE RV+ YQ G + +D
Sbjct: 307 AFM-ELQDVQELSNFFERRVSAYQVGVTGSVTFD 339
>gi|160942848|ref|ZP_02090088.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii
M21/2]
gi|158445900|gb|EDP22903.1| hypothetical protein FAEPRAM212_00325 [Faecalibacterium prausnitzii
M21/2]
Length = 347
Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 93/350 (26%), Positives = 155/350 (44%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ E +V +RM + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 7 KPLFNPEGDPDVRLRRMTGGNTTNLNDFNNMKYAWVSDWYRQAMNNFWIPEEINLSQDVK 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L ER + L F +S+ N+ I +++ E L QAF+E V
Sbjct: 67 DY---PRLLSAERSAYDKILSFLVFLDSIQTANLP-NIGAYITANEVNLCLSIQAFQECV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ + R K + L T + + D L
Sbjct: 123 HSQSYSYMLDTICSP------VERNDILYQWKTDEHLLRRNTFIGDCYNEFQERKDAPTL 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIITELQ 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T E Q R M+ E EIA+ H + GLN Y++++ N R
Sbjct: 237 KEQPELFTAESVQALREMMREGVEQEIAWGHYVIGDDIPGLNRQMISDYIRYLGNLRWTS 296
Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G L+ W+S+ D + +FFE R T Y + L D
Sbjct: 297 LGYPALYPGFESEPESMEWVSQYADANMVKTDFFEARSTAYAKSTALIDD 346
>gi|153814165|ref|ZP_01966833.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756]
gi|317499963|ref|ZP_07958199.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium
8_1_57FAA]
gi|331087814|ref|ZP_08336739.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
bacterium 3_1_46FAA]
gi|145848561|gb|EDK25479.1| hypothetical protein RUMTOR_00374 [Ruminococcus torques ATCC 27756]
gi|316898680|gb|EFV20715.1| ribonucleoside-diphosphate reductase [Lachnospiraceae bacterium
8_1_57FAA]
gi|330409509|gb|EGG88950.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
bacterium 3_1_46FAA]
Length = 353
Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 88/350 (25%), Positives = 156/350 (44%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ + +V +RM+ + ++N LKY WA E Y A NN W+P E+ + D+
Sbjct: 13 KPLFNPDGDTDVLKRRMIGGNTTNLNDYNNLKYTWASEWYRQAMNNFWIPEEINLSQDIK 72
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L+ ER + L F +S+ N+ + +++ E L Q F+E V
Sbjct: 73 DY---PNLSPAERKAYDKILSFLVFLDSIQTANLP-CVGEYITANEVNLCLNIQTFQECV 128
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ + R K + L T + D L
Sbjct: 129 HSQSYSYMLDTICSPDE------RMDILYQWKTDEHLLKRNTFIGECYNEFQVKKDARTL 182
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + V EG++F++GF +L R KM G A++ +YI RDE+ HL ++I +++
Sbjct: 183 VKVMMANFVLEGIYFFSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIIIELR 242
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E+P L+ + + +L EA EI +A + GLN Y++++ N R
Sbjct: 243 KEHPELFDDHMVSEMKELLMEAVRQEIEWACYVIGNEVPGLNEKMITDYIRYLGNLRWKS 302
Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G P++ W+S+ + + +FFE R T Y + L D
Sbjct: 303 LGYAPIYPGCEREPETMKWVSQYSNANMVKTDFFEARSTAYAKSTALIDD 352
>gi|162452149|ref|YP_001614516.1| ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce
56']
gi|161162731|emb|CAN94036.1| Ribonucleotide-diphosphate reductase [Sorangium cellulosum 'So ce
56']
Length = 339
Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 99/321 (30%), Positives = 169/321 (52%), Gaps = 9/321 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P+ Y +E Y SA N W EV D+ + +TD ER +++R + FFA+
Sbjct: 18 TLRPMAYPAFFEMYRSAIKNTWTVEEVDFSTDVGDLR---KMTDAERHLVQRLVAFFATG 74
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMY 149
+S+VANN+VL +YRH++ PE R YL RQ +EEA+H + ++ + D F
Sbjct: 75 DSIVANNLVLNLYRHINAPEARMYLSRQLYEEALHVQFYLTLLDTYIPDPEDRHRAFAAV 134
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA++ +++ ++ S T+ + FL +L F EG++F+ FA +
Sbjct: 135 ENIPSIRQKADFCMRWLDSVESLG-RLDTRAERRRFLLNLICFAACVEGLFFFGAFAYVY 193
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
L + G+A ++ RDES H+ F +V++ + E P L+ + M+ EA
Sbjct: 194 FLRSRGLLHGLAAGTSWVFRDESAHMRFAFEVVSTARREEPELFDAGLARSILDMMDEAI 253
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E +A + + G G++A +Y++F A++R +G+ + +NPF +M + D+
Sbjct: 254 ACEARFAEDLLGAGVAGMSARDVRRYLEFCADQRLATLGMPKRYG-AKNPFSFMD-LQDV 311
Query: 330 KKEKNFFETRVTEYQQGAELK 350
++ NFFE RV+ YQ G +
Sbjct: 312 QEVTNFFERRVSAYQVGVSGE 332
>gi|99036000|ref|ZP_01315041.1| hypothetical protein Wendoof_01000112 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 329
Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 87/321 (27%), Positives = 154/321 (47%), Gaps = 14/321 (4%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA++ +L HW+P EVP+ DD+ WK+ L+ E+ ++ + FF ++
Sbjct: 10 YKPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSSVEKNLLTQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + E L + E +H + Y++ ++G+ E E + + +
Sbjct: 68 IEVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYD 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ K + L++ ++ K + + L VF EG+ + FA +L+ R
Sbjct: 127 AMRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
KM G+ + + RDE+LH N I + N EN +W EF+++ + LE
Sbjct: 178 FGKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELED 237
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ G GL+A Y++++ANRR Q+GLE ++ +NP PW+ E+++ +
Sbjct: 238 EFIKLAFDLGDVEGLSAEEVRNYIRYVANRRLMQLGLESIYDVNDNPTPWLDEILNGVEH 297
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE RVTEY + + W+
Sbjct: 298 TNFFENRVTEYSRAATQGTWE 318
>gi|224438210|ref|ZP_03659145.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
cinaedi CCUG 18818]
gi|313144656|ref|ZP_07806849.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
cinaedi CCUG 18818]
gi|313129687|gb|EFR47304.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
cinaedi CCUG 18818]
Length = 348
Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats.
Identities = 97/351 (27%), Positives = 181/351 (51%), Gaps = 14/351 (3%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
N I E + +V D+++ + L +KY WA+ + + N W P EV +
Sbjct: 8 NIERKKIYNPESKESVKDRKIFGGNPTSMFDLNKIKYQWAYNLWKTMLANTWFPEEVNLN 67
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + +GLT E+ R L +SL NN++ + ++++PE L+RQAF
Sbjct: 68 GDKRDYA--DGLTAQEKAGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAF 125
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
EEA+HS ++ ++ S+ + E++ M+R + +K + +++ G + +
Sbjct: 126 EEALHSQSYAVMVESISANTDEIYEMWRVDMQLRSKND-------HIANVYIELGKQPTE 178
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
Q L+ LF + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL +I
Sbjct: 179 QNLLKALFA-NQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLLVFQQMI 237
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
N ++ E PHL+T +++ M +A +E + +GL A +Y+Q++A+
Sbjct: 238 NALRKEQPHLFTPSLEEEVIAMFQKAVEIESVWGEYITQGQILGLTAEIIREYIQYLADM 297
Query: 303 RCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
R +GL ++ +++NP W+ + ++ NFFE +VT Y +G+ + +D
Sbjct: 298 RLRAVGLREIY-HSKNPIKWVEQFASFNDQKTNFFEAKVTNYSKGS-INFD 346
>gi|257456224|ref|ZP_05621421.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
vincentii ATCC 35580]
gi|257446310|gb|EEV21356.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
vincentii ATCC 35580]
Length = 351
Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats.
Identities = 96/356 (26%), Positives = 167/356 (46%), Gaps = 15/356 (4%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ + V ++M+ + ++N +KY WA E Y A NN W+P E+
Sbjct: 5 KTVLARKKLFNETGDIEVHLRKMIGGNTTNLNDFNNMKYAWASEWYRQAMNNFWIPEEIN 64
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ ++ L+ E+ + L F +S+ N+ + ++++ E L Q
Sbjct: 65 MNADVQDYR---KLSPAEKTAYDKILSFLIFLDSIQTANLP-NVGQYITANEVNLCLTIQ 120
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AF+EAVHS ++ Y++ ++ + R K + L + D
Sbjct: 121 AFQEAVHSQSYSYMLDTICSPDE------RTAILYQWKDDEHLLKRNKFIGDLYNEFQDD 174
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
L + V + EG++FY+GF +LGR NKM G ++ +YI RDE+ HL
Sbjct: 175 KSALALLKVAVANYILEGVYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRS 234
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I++++ E P L+T E + R+M+ E EIA+ H + GL Y+Q++
Sbjct: 235 IIHELQKEEPQLFTPENNELFRSMIREGCEQEIAWGHYVIGDDIPGLTRGMVTDYIQYLG 294
Query: 301 NRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N RC +G EPL++ + E P W+S+ + + +FFE + T Y + + LK D
Sbjct: 295 NLRCENLGFEPLYEGHREEPASMSWVSQYSNANLIKTDFFEAKSTAYAKSSALKDD 350
>gi|167748341|ref|ZP_02420468.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662]
gi|167652333|gb|EDR96462.1| hypothetical protein ANACAC_03085 [Anaerostipes caccae DSM 14662]
Length = 358
Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats.
Identities = 89/350 (25%), Positives = 161/350 (46%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ +V +RM+N + ++N +KY W Y A NN W+P E+ + D+
Sbjct: 18 KPLFNPYGDTDVRKRRMINGNTTNLNDFNNMKYPWVSGWYRQAMNNFWIPEEINLGTDIK 77
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+K L++ ER + L F +S+ N+ I +++ E L QAF+EAV
Sbjct: 78 DYKQ---LSEPERRAYDKILSFLIFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAV 133
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ R K + L + + + E
Sbjct: 134 HSQSYSYMLDTICEP------QERNDILYQWKNDPHLLERNQFIGDLYNDFQTNKNTETF 187
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
V + EG++FY+GF +LGR ++M G ++ +YI RDE+ HL +++ ++K
Sbjct: 188 VKTLVANYILEGIYFYSGFMFFYNLGRNHRMPGSVQEIRYINRDENTHLWLFKNILLELK 247
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+ + R M+ + EI + H + GL E+Y++++ N RC
Sbjct: 248 KEEPSLFHPDCINDYRRMIKKGCEQEIRWGHYVIGDEIQGLKKEMVEEYIRYLGNLRCQN 307
Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G EP++ +E W+S+ + + +FFE + T Y + + L D
Sbjct: 308 LGFEPIYPGSETEPESMSWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 357
>gi|85375147|ref|YP_459209.1| ribonucleotide-diphosphate reductase subunit beta [Erythrobacter
litoralis HTCC2594]
gi|84788230|gb|ABC64412.1| ribonucleotide reductase beta subunit [Erythrobacter litoralis
HTCC2594]
Length = 356
Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats.
Identities = 78/323 (24%), Positives = 151/323 (46%), Gaps = 18/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y WA++ + HWMP EVP+ +D W +T+ ER ++ + FF
Sbjct: 7 RKTYKPFEYPWAYDFWKRQQQIHWMPEEVPLGEDCRDWAQ--KITEHERNLLTQIFRFFT 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
++ V + R E + L + E VH + +++ ++G+ E E ++ +
Sbjct: 65 QADVEVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + K ++ + D D++ + L VF EGM + FA +++
Sbjct: 124 EYEEMKDKHDYLQLF------------GVDTDEDIARTLAVFGGFTEGMQLFASFAMLMN 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
R NKM G+ + + +RDESLH + + ++ E +TK ++ + ++
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDESLHCEGIVRLFHEFVRERD-CYTKAVKEDIIDICQKSVR 230
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
LE + G G+ ++Y+++IA+ R Q+GL+P++ ++P PW++ +++
Sbjct: 231 LEDNFIDLAFEMGPVSGMTPKEIKKYIRYIADWRLGQLGLQPIYMVDDHPLPWLAPLLNG 290
Query: 330 KKEKNFFETRVTEYQQ-GAELKW 351
+ NFFE R TEY + + W
Sbjct: 291 VEHANFFEQRATEYSKGATKGNW 313
>gi|262277047|ref|ZP_06054840.1| ribonucleoside-diphosphate reductase, beta subunit [alpha
proteobacterium HIMB114]
gi|262224150|gb|EEY74609.1| ribonucleoside-diphosphate reductase, beta subunit [alpha
proteobacterium HIMB114]
Length = 342
Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats.
Identities = 80/334 (23%), Positives = 155/334 (46%), Gaps = 20/334 (5%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D++ +L ++ P +Y W ++ +L+ HW+P E+P+ +D+ W+ LT E+
Sbjct: 19 DNEGLLKEKA---VYKPFRYPWCYDAWLTQQRIHWLPEEIPLAEDVRDWQK--NLTAHEK 73
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
++ + FF ++ V N + E + A E +H + +++ ++G
Sbjct: 74 NLLTQIFRFFTQADVEVNNCYLRHYTTVFKPTEVLMMMTAFASMETIHVAAYSHLLDTIG 133
Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
+ E E ++ + + + K ++ + + +E + + VF EG+
Sbjct: 134 MPESE-YSAFLKYKEMKDKYDYMQNF------------NVNNKREIAKTVAVFSAFTEGL 180
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
+ FA +L+ R NKM G+ + + +RDE+LH N I + N ENP L + ++
Sbjct: 181 QLFASFAILLNFPRFNKMKGMGQVVTWSVRDETLHCNSMIKIFNTFCAENPGLLDESLKK 240
Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ E A+ G GL A + Y+++IANRR Q+ L+ ++ EN
Sbjct: 241 EITDACRTIVEHEDAFIDLAFEMGPIEGLTAQQIKDYIRWIANRRLVQLKLDEIYDVKEN 300
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKW 351
P W+ +++ + NFFE R TEY + + + W
Sbjct: 301 PLEWIDTMLNGVEHMNFFEGRATEYSKASTKGSW 334
>gi|290995765|ref|XP_002680453.1| predicted protein [Naegleria gruberi]
gi|284094074|gb|EFC47709.1| predicted protein [Naegleria gruberi]
Length = 338
Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats.
Identities = 91/326 (27%), Positives = 155/326 (47%), Gaps = 28/326 (8%)
Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
L PL Y WE Y + W EV + D+ W+ L +E+ IK L
Sbjct: 25 NPHRFVLFPLHYPKMWEMYKKTMASFWTVEEVDLHTDITEWE---KLNSNEQHFIKTVLA 81
Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--- 144
FFA+S+ +V N+ + PE R + Q E +H+ + +I +L D+ E
Sbjct: 82 FFAASDGIVNENLCQQFMAQVQVPEARCFYGFQIAIENIHAEMYSTLIETLIKDQRERNR 141
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
LF+ VPS+ KANWAL++ + + + + + EG++F
Sbjct: 142 LFHAIDTVPSVQKKANWALKWINS--------------ENLFAERLLAFACVEGIFFSGS 187
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F I L + M G++ + I RDE LH +F + + +K +TK QQ ++
Sbjct: 188 FCSIFWLKKRGLMPGLSFSNELISRDEGLHTDFACLLYSTLK------YTKLPQQVVHSL 241
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
++EA +E + E++P +G+N+ +QY++ +A+R IG E ++ + NPF WM+
Sbjct: 242 VYEAVEIEKEFISESLPVDLIGMNSRLMQQYIEMVADRLLVSIGYEKIYN-SSNPFDWMN 300
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+I + + NFFE +V EY + +
Sbjct: 301 -IISVSGKTNFFEKKVGEYAKANIMS 325
>gi|254456975|ref|ZP_05070403.1| ribonucleoside-diphosphate reductase, beta subunit
[Campylobacterales bacterium GD 1]
gi|207085767|gb|EDZ63051.1| ribonucleoside-diphosphate reductase, beta subunit
[Campylobacterales bacterium GD 1]
Length = 340
Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats.
Identities = 98/348 (28%), Positives = 177/348 (50%), Gaps = 15/348 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I + + NV+D+++ + +L +KY WA+ + NN W P EV M D+
Sbjct: 3 RKNIYNPDSKENVNDRKVFGGDPTGIFELNNIKYQWAYNLWEVMLNNTWFPKEVDMTRDV 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+K LT++E+ + L +SL NN++ + ++++PE L+RQ+FEEA
Sbjct: 63 NDYK---NLTENEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTSPEINLILVRQSFEEA 119
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+HS ++ ++ S+ + E+++++R + K + + Q L+ + +
Sbjct: 120 LHSQSYAVMVDSISTNSAEIYDLWRRDMMLKGKNDAIARVYQELA--------ANPTEHN 171
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ EG++FY+GF I +L R+ KM+G A+ ++I RDE HL ++IN +
Sbjct: 172 FVKACFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINTL 231
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P L+T + +++ M EA LE + +GL EQY++F+A+ R
Sbjct: 232 RKERPDLFTDKLKEEVIAMFKEAVQLESEWGKYITQGQILGLTNDIVEQYIKFLADERLT 291
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
+G E L+ T NP W+ + ++ NFFE VT Y +G+ L +D
Sbjct: 292 AVGFEKLYNVT-NPIKWVDDFAKFNDQKTNFFEGTVTNYSKGS-LTFD 337
>gi|332185556|ref|ZP_08387304.1| ribonucleotide reductase, small chain family protein [Sphingomonas
sp. S17]
gi|332014534|gb|EGI56591.1| ribonucleotide reductase, small chain family protein [Sphingomonas
sp. S17]
Length = 351
Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats.
Identities = 84/317 (26%), Positives = 148/317 (46%), Gaps = 17/317 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
Q P +Y WA+E + HW+P EVP+ +D W LTD ER ++ + FF +
Sbjct: 9 QYKPFEYPWAFEFWKRQQQLHWLPEEVPLGEDCRDWAQ--KLTDHERNLLTQIFRFFTQA 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + R E + L + E VH + +++ ++G+ E E + + E
Sbjct: 67 DVEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGAFLEY 125
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ K ++ ++ D D++ + L +F EG+ + FA +++
Sbjct: 126 AEMKDKHDYLQKF------------GVDNDEDIARTLAMFGGFTEGVQLFASFAMLMNFP 173
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R NKM G+ + + +RDESLH I + + E TK + LE
Sbjct: 174 RFNKMKGMGQIVTWSVRDESLHCEGIIQLFHAFTKER-QCLTKAVKDDIADQCQTTVRLE 232
Query: 273 IAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
+ G V G+ A ++Y+++IA+ R Q+GL+P++ E+P PW++ +++ +
Sbjct: 233 DNFIDLAFEMGPVNGMTAKDIKKYIRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292
Query: 332 EKNFFETRVTEYQQGAE 348
NFFETR TEY + A
Sbjct: 293 HANFFETRATEYSKAAT 309
>gi|145596896|ref|YP_001161193.1| ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440]
gi|145306233|gb|ABP56815.1| Ribonucleoside-diphosphate reductase [Salinispora tropica CNB-440]
Length = 350
Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats.
Identities = 104/334 (31%), Positives = 185/334 (55%), Gaps = 12/334 (3%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L+ D+ L P++Y ++++ A N W EV + DL L+ ER ++
Sbjct: 21 LLDPGMDL-TLRPMRYPHFFDRFKEAIKNTWTVEEVDLHSDLGD---LAKLSSAERHLVS 76
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
R + FFA+ +++VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + +E
Sbjct: 77 RLVAFFATGDTIVANNLVLNLYQHVNSPEGRLYLSRQLFEEAVHVQFYLNLLDTYVPEEK 136
Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
E F +PSI KA + ++ ++ T+ + FL +L F EG++
Sbjct: 137 ERFAAFAAVENIPSIARKAEFCFRWIDSIFEL-RELRTQADRRAFLLNLICFAACIEGLF 195
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY FA + L + G+A ++ RDES+H+ F DV++ ++ E P L+ + +++
Sbjct: 196 FYGAFAYVYFLRSRGLLNGLASGTNWVFRDESMHMAFAFDVVDTVRAEEPDLFDADLERQ 255
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
+ M+ EA E+ +A + + +G GL+ +Y+Q +A+RR +G+ P++ + NPF
Sbjct: 256 VKEMVAEAVDCEVQFAEDLLEQGVSGLSLADMREYLQHVADRRLVTLGIAPMYG-SANPF 314
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
+M E+ D+++ NFFE RV+ YQ G + +D
Sbjct: 315 AFM-ELQDVQELSNFFERRVSAYQMGVSGSVTFD 347
>gi|94495782|ref|ZP_01302361.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58]
gi|94424474|gb|EAT09496.1| ribonucleotide reductase beta subunit [Sphingomonas sp. SKA58]
Length = 350
Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats.
Identities = 78/317 (24%), Positives = 148/317 (46%), Gaps = 17/317 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA+E + HW+P EVP+ +D W L+D ER ++ + FF +
Sbjct: 9 VYKPFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + R E + L + E VH + +++ ++G+ E E ++ + +
Sbjct: 67 DVEVQDCYHEKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQY 125
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ K ++ Q+ D D++ + L +F EG+ + FA +++
Sbjct: 126 KEMKDKHDYLQQF------------GVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFP 173
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R NKM G+ + + +RDE+LH + + + E T + M + +E
Sbjct: 174 RFNKMKGMGQIVSWSVRDETLHCEGIVRLFHAFVKERD-CLTASVKDDIMDMCQKTVRIE 232
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
A+ G G+ ++Y+++IA+ R Q+GL+P++ E+P PW++ +++ +
Sbjct: 233 DAFVDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292
Query: 332 EKNFFETRVTEYQQGAE 348
NFFETR TEY + A
Sbjct: 293 HANFFETRSTEYSKAAT 309
>gi|155370982|ref|YP_001426516.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella
virus 1]
gi|155124302|gb|ABT16169.1| hypothetical protein ATCV1_Z035L [Acanthocystis turfacea Chlorella
virus 1]
Length = 325
Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats.
Identities = 94/321 (29%), Positives = 153/321 (47%), Gaps = 28/321 (8%)
Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
P++Y ++ Y A W EV + D+ W+ L DDER IK LGFFA S+
Sbjct: 20 FPIRYPDIFQMYKKAVATFWTVEEVQLNQDVVDWRE--KLNDDERHFIKHILGFFAGSDG 77
Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151
+V N+ +++P R + Q + E+VHS + ++ +L DE E LF
Sbjct: 78 MVMENLNNNFAEEVTDPSARMFYAYQGYNESVHSEQYSLLLDALIEDETERNKLFEAIET 137
Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
+P++ KA WA +Y D+ F + L + V EG+ F F I L
Sbjct: 138 IPAVGKKAAWASKYFSR-------------DRSFAERLVAW-VCVEGLLFSGSFCAIFWL 183
Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
M G+ ++I RDE LH FG + ++++ + ++++ EA
Sbjct: 184 RNRGLMPGLGLSNEFISRDEGLHQQFGELLYSKLENKLSL-------DVVKSIVEEAVAN 236
Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
E + + +P +G+N+ QY++F+A+R +G F ENPF +M E+I L+
Sbjct: 237 EKDFICDAIPCRMIGMNSDLMSQYIEFVADRIFTALGYPKQFG-AENPFDFM-ELISLEG 294
Query: 332 EKNFFETRVTEYQQGAELKWD 352
+ NFFE RV+EYQ+ + D
Sbjct: 295 KSNFFERRVSEYQKAGVMNAD 315
>gi|219126374|ref|XP_002183434.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405190|gb|EEC45134.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 296
Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats.
Identities = 84/311 (27%), Positives = 142/311 (45%), Gaps = 28/311 (9%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y A + W E+ + DL W + L+ +ER + L FFA+S+ +V N+
Sbjct: 1 MYKKAEASFWTAEEIDLAGDLQDW---DKLSSNERHFVSHVLAFFAASDGIVNENLAGNF 57
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
+ + E R + Q E +HS T+ +I + D E L + VP + KA+W
Sbjct: 58 ATEIQSAEARCFYGFQIAVENIHSETYSLLIDTYVRDAAEKDHLLHAIETVPCVQKKASW 117
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
ALQ+ DA+ + V + EG++F F I L + M G+
Sbjct: 118 ALQW-------------CDANHASFAERCVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLC 164
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ I RDE LH +F + ++++ + P E ++ +A +E + + +P
Sbjct: 165 FSNELISRDEGLHCDFACLLYSKLQNQLPVARIVE-------IITDAVTIEQEFVQDALP 217
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
+G+N+ +Y++F A+R +G +K NPF WM E+I L+ + NFFE RV
Sbjct: 218 VELIGMNSTLMCRYIEFCADRLLVALGCPKHYKAV-NPFDWM-EMISLQGKTNFFEKRVG 275
Query: 342 EYQQGAELKWD 352
EY + + D
Sbjct: 276 EYAKSGVGEKD 286
>gi|225677302|ref|ZP_03788281.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont
of Muscidifurax uniraptor]
gi|225590665|gb|EEH11913.1| ribonucleotide-diphosphate reductase beta [Wolbachia endosymbiont
of Muscidifurax uniraptor]
Length = 329
Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats.
Identities = 87/321 (27%), Positives = 153/321 (47%), Gaps = 14/321 (4%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA++ +L HW+P EVP+ DD+ WK+ L+ E+ ++ + FF ++
Sbjct: 10 YKPFNYPWAYDAWLQQQRIHWIPEEVPLADDVKDWKT--KLSSVEKNLLTQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + E L + E +H + Y++ ++G+ E E + + +
Sbjct: 68 IEVNNCYMRHYSNIFKPTEICMMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYD 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ K + L++ ++ K + + L VF EG+ + FA +L+ R
Sbjct: 127 AMRKKYEYMLEFEES---------KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
KM G+ + + RDE+LH N I + N EN +W EF+++ + LE
Sbjct: 178 FGKMKGMGQIIAWSARDETLHTNSIIMLFNTFIKENNEIWDDEFKEELYSACRTIVELED 237
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ G GL+A Y+ ++ANRR Q+GLE ++ +NP PW+ E+++ +
Sbjct: 238 EFIKLAFDFGDVEGLSAEEVRNYIHYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEH 297
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE RVTEY + + W+
Sbjct: 298 TNFFENRVTEYSRAATQGTWE 318
>gi|307295356|ref|ZP_07575195.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum
L-1]
gi|306878859|gb|EFN10078.1| Ribonucleoside-diphosphate reductase [Sphingobium chlorophenolicum
L-1]
Length = 351
Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats.
Identities = 79/317 (24%), Positives = 148/317 (46%), Gaps = 17/317 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA+E + HW+P EVP+ +D W L+D ER ++ + FF +
Sbjct: 9 VYKPFEYPWAYEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + R E + L + E VH + +++ ++G+ E E ++ + +
Sbjct: 67 DVEVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFMQY 125
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ K ++ Q+ D D++ + L +F EG+ + FA +++
Sbjct: 126 KEMKDKHDYLAQF------------GVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFP 173
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R NKM G+ + + +RDE+LH I + + E T + M + +E
Sbjct: 174 RFNKMKGMGQIVSWSVRDETLHCEGIIRLFHAFVKERD-CLTASVKDDIMDMCQKTVRIE 232
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
A+ G G+ ++Y+++IA+ R Q+GL+P++ E+P PW++ +++ +
Sbjct: 233 DAFIDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292
Query: 332 EKNFFETRVTEYQQGAE 348
NFFETR TEY + A
Sbjct: 293 HANFFETRATEYSKAAT 309
>gi|87198296|ref|YP_495553.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
aromaticivorans DSM 12444]
gi|87133977|gb|ABD24719.1| Ribonucleoside-diphosphate reductase [Novosphingobium
aromaticivorans DSM 12444]
Length = 351
Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats.
Identities = 82/323 (25%), Positives = 151/323 (46%), Gaps = 18/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
N P +Y WA+E + HWMP EVP+ +D W +++ ER ++ + FF
Sbjct: 7 RNTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQ--KISEHERNLLTQIFRFFT 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
++ V N R E + L + E VH + +++ ++G+ E E + M+
Sbjct: 65 QADVEVQNCYHEQYGRVFKPTEVKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YGMFL 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + AK ++ T + D++ + L +F EG+ + FA +++
Sbjct: 124 EYEELKAKHDY------------LQTFGVETDEDIARTLAMFGGFTEGLQLFASFAMLMN 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
R NKM G+ + + +RDESLH + + E TK ++ +
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDESLHCEGITRLFHAFVKER-GCLTKAVKEDIIDCCQKTVR 230
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
LE A+ +G G++A ++Y+++IA+ R Q+GL ++ ++P PW++ +++
Sbjct: 231 LEDAFIDLAFEQGPVPGMSAKEIKRYIRYIADWRLSQLGLPAIYMIEDHPLPWLAPLLNG 290
Query: 330 KKEKNFFETRVTEYQQ-GAELKW 351
+ NFFETR TEY + + W
Sbjct: 291 VEHANFFETRATEYSKAATKGDW 313
>gi|91205547|ref|YP_537902.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
bellii RML369-C]
gi|91069091|gb|ABE04813.1| Ribonucleoside-diphosphate reductase beta chain [Rickettsia bellii
RML369-C]
Length = 324
Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats.
Identities = 86/321 (26%), Positives = 148/321 (46%), Gaps = 17/321 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++
Sbjct: 10 YKPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + R E L + E VH + +++ ++G+ E E ++ + +
Sbjct: 68 IEVNNCYMKHYSRVFKPTEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K ++ Q+ +++ L VF EG+ + FA +L+ R
Sbjct: 127 EMKDKYDYMQQF------------GVATNEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDE+LH N I + ENP +WT+ + + E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTENLRSRIYKACTTIVHFED 234
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
A+ G GL A Y+++IA+RR Q+GL+ ++ NP PW+ E+++ +
Sbjct: 235 AFIALAFEVGGIEGLTADEVRLYIRYIADRRLFQLGLKDIYMVKNNPLPWLDEMLNGVEH 294
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE R TEY + W+
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|294013210|ref|YP_003546670.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium
japonicum UT26S]
gi|292676540|dbj|BAI98058.1| ribonucleoside-diphosphate reductase beta chain [Sphingobium
japonicum UT26S]
Length = 351
Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats.
Identities = 78/317 (24%), Positives = 148/317 (46%), Gaps = 17/317 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA+E + HW+P EVP+ +D W L+D ER ++ + FF +
Sbjct: 9 VYKPFEYPWAYEFWKRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + R E + L + E VH + +++ ++G+ E E ++ + +
Sbjct: 67 DVEVQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFMQY 125
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ K ++ Q+ D D++ + L +F EG+ + FA +++
Sbjct: 126 KEMKDKHDYLQQF------------GVDTDEDIAKTLAMFGGFTEGLQLFASFAMLMNFP 173
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R NKM G+ + + +RDE+LH + + + E T + M + +E
Sbjct: 174 RFNKMKGMGQIVSWSVRDETLHCEGIVRLFHAFVKERD-CLTASVKDDIMDMCQKTVRIE 232
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
A+ G G+ ++Y+++IA+ R Q+GL+P++ E+P PW++ +++ +
Sbjct: 233 DAFVDLVFEMGPVPGMTPKDIKKYVRYIADWRLGQLGLKPIYMIDEHPLPWLTPLLNGVE 292
Query: 332 EKNFFETRVTEYQQGAE 348
NFFETR TEY + A
Sbjct: 293 HANFFETRATEYSKAAT 309
>gi|87311395|ref|ZP_01093515.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula
marina DSM 3645]
gi|87285807|gb|EAQ77721.1| ribonucleotide-diphosphate reductase beta subunit [Blastopirellula
marina DSM 3645]
Length = 313
Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats.
Identities = 167/298 (56%), Positives = 223/298 (74%), Gaps = 2/298 (0%)
Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+RV +DKR++N DVNQL+PLKY WAWE Y++ C NHWMPTEVPM D+ W+S +
Sbjct: 16 QRVRANDKRLVNCSQVDVNQLMPLKYNWAWEHYMNGCANHWMPTEVPMTKDIETWRS-DK 74
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LTDDERL+I RNLGFF+++ESLV NN+VLAI++H++N ECRQYLLRQAFEEAVHSHTF Y
Sbjct: 75 LTDDERLVIMRNLGFFSTAESLVGNNLVLAIFKHVTNAECRQYLLRQAFEEAVHSHTFLY 134
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
++ SLGL+EGE+FNMY EVP+I K + ++ T + SP F+T + + Q FL++L +Y
Sbjct: 135 VVESLGLNEGEIFNMYNEVPAIARKDQFEMKLTAEVLSPDFSTDSYEGLQAFLKNLIGYY 194
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
++ EG++FYTGF +LS R N M GI EQ+QYI+RDE++HLNFGID+IN IK ENP LW
Sbjct: 195 IIMEGIFFYTGFVMVLSFHRRNLMTGIGEQFQYILRDETVHLNFGIDLINGIKAENPDLW 254
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
T EFQ + ++ +A LEI YA + +P G +GLN Y+ ++A+RR +IGL
Sbjct: 255 TAEFQAEIIDLIKQAVELEIEYAGDCLPNGILGLNRDLFRDYVHYVADRRVERIGLPK 312
>gi|320536436|ref|ZP_08036471.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
phagedenis F0421]
gi|320146705|gb|EFW38286.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
phagedenis F0421]
Length = 363
Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats.
Identities = 96/352 (27%), Positives = 163/352 (46%), Gaps = 15/352 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ V + +RM+ + ++N LKY W E Y A NN W+P E+ M D
Sbjct: 21 DRRALFNEHGDVELHKRRMIGGNTTNLNDFNNLKYPWVSEWYRQAMNNFWIPEEINMNTD 80
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ ++ L+ E+ + L F +S+ N+ + ++++ E L QAF+E
Sbjct: 81 VQDYR---KLSKAEKTAYDKILSFLIFLDSIQTANLP-NVGQYITANEVNLCLTIQAFQE 136
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
AVHS ++ Y++ ++ E R K + L + D
Sbjct: 137 AVHSQSYSYMLDTICSPEE------RNDILYQWKDDEHLLARNKFIGNLYNEFVNDKSAL 190
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
L + V + EG++FY+GF +LGR NKM G ++ +YI RDE+ HL +I +
Sbjct: 191 ALVKVAVANYILEGVYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQE 250
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E P L+T E + R M+ E EI + H + GLN Y+Q++ N RC
Sbjct: 251 LQKEEPQLFTPENIEMFRAMIKEGCEQEIKWGHYVIGDDIPGLNKQMITDYIQYLGNLRC 310
Query: 305 HQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G EPL++ + E P W+S+ + + +FFE + T Y + + + D
Sbjct: 311 ENLGFEPLYEGHREEPASMSWVSQYSNANLIKTDFFEAKSTAYAKSSAMVDD 362
>gi|225386408|ref|ZP_03756172.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme
DSM 15981]
gi|225047489|gb|EEG57735.1| hypothetical protein CLOSTASPAR_00155 [Clostridium asparagiforme
DSM 15981]
Length = 347
Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 162/350 (46%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ + V+ +RM+ + ++N +KY W Y A NN W+P E+ M D+
Sbjct: 7 KPLFNPQGDTEVNLRRMIGGNTTNLNDFNNMKYAWVSGWYRQAMNNFWIPEEINMSSDIK 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L + ER + L F +S+ N+ I ++++ E L Q F+EAV
Sbjct: 67 DY---PELPEAERTAYDKILSFLIFLDSIQTANLP-NIGQYITANEVNLCLTIQGFQEAV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ + R K + L T + D + L
Sbjct: 123 HSQSYSYMLDTICSP------VERNTILYQWKDDEHLLRRNTFIGELYNEFQDKKDAQTL 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++I ++K
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLLRNMILELK 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L++ E + + M+ E EIA+ H + GL +Y++++ N R
Sbjct: 237 KEEPQLFSPETVEMLKAMVEEGVEQEIAWGHYVIGDRISGLTREMVTEYIRYLGNLRWTS 296
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G EPL++ Y E P W+ + + + +FFE + T Y + L D
Sbjct: 297 LGFEPLYEGYEEEPESMKWVGQYSNANMVKTDFFEAKSTAYAKSTALVDD 346
>gi|157827263|ref|YP_001496327.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
bellii OSU 85-389]
gi|157802567|gb|ABV79290.1| ribonucleotide-diphosphate reductase subunit beta [Rickettsia
bellii OSU 85-389]
Length = 324
Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats.
Identities = 86/321 (26%), Positives = 148/321 (46%), Gaps = 17/321 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA+E + + HW+P EVP+ DD+ WK LT E+ ++ + FF ++
Sbjct: 10 YKPFSYPWAYEAWHTQQKIHWLPEEVPLADDVKDWK--YNLTPGEKHLLTQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + R E L + E VH + +++ ++G+ E E ++ + +
Sbjct: 68 IEVNNCYMKHYSRVFKPTEVMMMLSAFSNMETVHIAAYSHLLDTVGMPEVE-YSAFLKYK 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K ++ Q+ +++ L VF EG+ + FA +L+ R
Sbjct: 127 EMKDKYDYMQQF------------GVATNEDIATTLAVFGAFTEGLQLFASFAIMLNFPR 174
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDE+LH N I + ENP +WT+ + + E
Sbjct: 175 FNKMKGMGQIIAWSVRDETLHTNSIITLFKTFVRENPEVWTENLRSRIYKACTTIVHFED 234
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
A+ G GL A Y+++IA+RR Q+GL+ ++ NP PW+ E+++ +
Sbjct: 235 AFIALAFEVGGIEGLTADEVRLYIRYIADRRLFQLGLKDIYMVKNNPLPWLDEMLNGVEH 294
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE R TEY + W+
Sbjct: 295 TNFFENRATEYSKAATTGSWE 315
>gi|88607783|ref|YP_505152.1| ribonucleotide-diphosphate reductase subunit beta [Anaplasma
phagocytophilum HZ]
gi|88598846|gb|ABD44316.1| ribonucleoside-diphosphate reductase, beta subunit [Anaplasma
phagocytophilum HZ]
Length = 323
Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats.
Identities = 88/322 (27%), Positives = 154/322 (47%), Gaps = 14/322 (4%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF +
Sbjct: 9 VYKPFDYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTM--LSEKEKNLLVQIFRFFTQA 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V N + E L + E +H + Y++ ++G+ E E + + +
Sbjct: 67 DIEVNNCYMKHYSNIFRPTEICMMLSAFSNMETIHVAAYSYLLDTIGMPEVE-YQAFLKF 125
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ K ++ ++ + + + + L VF EG+ + FA +L+
Sbjct: 126 EVMKKKYDYMQRFEEC---------RRGDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQ 176
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R KM G+ + + RDESLH + I + N EN +W + +Q+ +LE
Sbjct: 177 RFGKMKGMGQIIAWSARDESLHTDSIIRLFNTFVHENGEIWDDDLKQELYDACKVIVMLE 236
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
+ G GL+A ++Y++FIANRR Q+ LEP++ ENP PW+ E+++ +
Sbjct: 237 DEFIDLAFALGDVEGLSACEVKRYIRFIANRRLKQLHLEPIYDVAENPLPWLDEILNGVE 296
Query: 332 EKNFFETRVTEYQQ-GAELKWD 352
NFFE RVTEY + E W+
Sbjct: 297 HTNFFENRVTEYARAATEGTWE 318
>gi|254293199|ref|YP_003059222.1| ribonucleotide-diphosphate reductase subunit beta [Hirschia baltica
ATCC 49814]
gi|254041730|gb|ACT58525.1| Ribonucleoside-diphosphate reductase [Hirschia baltica ATCC 49814]
Length = 345
Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats.
Identities = 81/336 (24%), Positives = 147/336 (43%), Gaps = 22/336 (6%)
Query: 22 KRMLNARSDVNQ----LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
K +L + + P +Y WA++ + HW+P EVP+ +D W L D
Sbjct: 3 KIILPEKPGLMTPSLSYKPFRYPWAYDFWKIQQQVHWVPEEVPLGEDCKDWA--GKLNDK 60
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
ER ++ + FF S+ V N + E R L + E VH + ++ +
Sbjct: 61 ERNLLTQIFRFFTQSDVEVGANYMENYMPLFKPVEVRMMLAAFSNMETVHIAAYALLLET 120
Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
+G+ + E F+ + E + AK ++ ++ + D + + L + VF E
Sbjct: 121 IGMPDSE-FSAFMEYEEMAAKHDYLGKF------------SVDTEADILTSMAVFGGFTE 167
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G+ + FA +++ R NKM G+ + + +RDESLH + + + E L
Sbjct: 168 GLQLFASFAMLMNFPRFNKMKGMGQIVSWSVRDESLHCEGMMKMFHTYAEETGALTKT-V 226
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ LE + G G+ + Y+++IA+ R Q+ L+P++
Sbjct: 227 KDDITDCCQTVVKLEDKFIDLAFEAGEVEGMTPEDIKNYIRYIADWRLKQLKLDPVYGVD 286
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQ-GAELKW 351
E+P PW++E+++ + NFFE R TEY + W
Sbjct: 287 EHPIPWLTEILNGVEHANFFEARATEYSKGATAGDW 322
>gi|313768358|ref|YP_004062038.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1]
gi|312599054|gb|ADQ91078.1| hypothetical protein MpV1_155c [Micromonas sp. RCC1109 virus MpV1]
Length = 388
Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats.
Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 32/339 (9%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ + + +L + + + PLKY WE Y A ++W EV + D+ WK+ L D
Sbjct: 69 IEDEYEPILASTLNRFTVFPLKYPELWELYKKAQMSNWTAEEVDLSKDMDDWKT---LND 125
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+E+ IK L FFA S+ +V NI + E R + Q+ E VH T+ +I
Sbjct: 126 NEQKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQSHNEMVHGETYSKLID 185
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
D E LF + VP I KANWAL++ D + F + LF +
Sbjct: 186 KYIKDGAEKKQLFEAIQTVPCIERKANWALKW-------------FDKSRPFAERLFA-F 231
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F F I L + M G+ + I RDE LH F +++ ++
Sbjct: 232 ACVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKLLRN------ 285
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
K + +++ EA +E + + +P +G+N+ +Y++++++R Q+G P++
Sbjct: 286 -KPSTETIHSIVKEAVEIEKNFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQVGQPPIW 344
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
++NPF +M E I L + NFFE RV +Y +L D
Sbjct: 345 N-SKNPFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 378
>gi|242309209|ref|ZP_04808364.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pullorum MIT 98-5489]
gi|239524250|gb|EEQ64116.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pullorum MIT 98-5489]
Length = 341
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 93/349 (26%), Positives = 178/349 (51%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + +L +KY WA+ + N W P EV M D
Sbjct: 3 NRKKIYNPNSNESVNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTQD 62
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ +GLT +E++ R L +SL NN++ + ++++PE L+RQAFEE
Sbjct: 63 KRDYA--DGLTPEEKIGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HS ++ ++ S+ + E++ M+R + +K ++ + + L+ + +
Sbjct: 121 ALHSQSYAVMVESISANTDEIYEMWRTDMQLRSKNDYIAEVYEQLA--------TNPTER 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NIIKAMFANQILEGIYFYSGFTFFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMINS 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
K E+P +TK+ +++ M EA +EIA+ +GL A ++Y++++A+ R
Sbjct: 233 TKKESPEFFTKDLEEEVLEMFREAVKVEIAWGEYITQGQILGLTAEIIQEYIKYLADDRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
++GL L+ ++P W+ + + NFFE VT Y +G+ + +D
Sbjct: 293 RRVGLPVLYN-AKHPIKWVDSFSSFNEQKTNFFEGNVTNYAKGS-INFD 339
>gi|302381236|ref|YP_003817059.1| ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides
ATCC 15264]
gi|302191864|gb|ADK99435.1| Ribonucleoside-diphosphate reductase [Brevundimonas subvibrioides
ATCC 15264]
Length = 348
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 85/316 (26%), Positives = 141/316 (44%), Gaps = 17/316 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P +Y WA++ + HWMP EVP+ +D W L D ER ++ + FF S+
Sbjct: 21 YKPFRYPWAFDMWKKQQQVHWMPEEVPLGEDCKDWA--ANLNDKERNLLTQIFRFFTQSD 78
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
VA+N + R E + L A E +H + ++ ++G+ E E F + E
Sbjct: 79 IEVADNYMEKYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMEYE 137
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ K ++ T D + + + L +F EG+ + FA +++ R
Sbjct: 138 AMRDKHDFMQ------------TFGVDTEADIARTLAMFGGFTEGLQLFASFAMLMNFPR 185
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDESLH + I + + E + TK LE
Sbjct: 186 QNKMKGMGQIVSWSVRDESLHCDGIIKLYHAFNKET-GVVTKAVADDIVQCCETVVGLED 244
Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ G + G+ +QY++FIA+ R Q+ L L+ ENP PW+ ++ +
Sbjct: 245 KFIDLAFEAGEINGMTPEDIKQYIRFIADWRLRQLKLPELYGVKENPLPWLQSLLSGVEH 304
Query: 333 KNFFETRVTEYQQGAE 348
NFFE R TEY + A
Sbjct: 305 ANFFEARATEYSKAAT 320
>gi|148284015|ref|YP_001248105.1| ribonucleotide-diphosphate reductase subunit beta [Orientia
tsutsugamushi str. Boryong]
gi|146739454|emb|CAM79093.1| ribonucleoside-diphosphate reductase beta chain [Orientia
tsutsugamushi str. Boryong]
Length = 329
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 88/331 (26%), Positives = 156/331 (47%), Gaps = 20/331 (6%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+LNAR P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++
Sbjct: 3 LLNARP---IYKPFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWK--YNLTPGEKHLLT 57
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
+ FF ++ V N + R E + L + E +H + +++ ++G+ E
Sbjct: 58 QIFRFFTQADIEVNNCYMKHYARVFQPTEVQMMLSAFSNMETIHIAAYSHLLDTIGMPET 117
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E + + + ++ K ++ ++ D +E L VF EG+ +
Sbjct: 118 E-YQAFMKYKAMKDKYDYMQRF------------NVDNKEEIATTLAVFGAFTEGVQLFA 164
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
FA +L+ R NKM G+ + + +RDE+LH N I + E P +WT++ + +
Sbjct: 165 SFAILLNFPRYNKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTEQLKSRIYE 224
Query: 264 MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
E A+ G GL A ++Y+++IA+RR Q+GL+ + +NP W
Sbjct: 225 ACCTIIHFEDAFIDLAFEVGGVEGLEARDVKKYIRYIADRRLLQLGLKENYLIEQNPLTW 284
Query: 323 MSEVIDLKKEKNFFETRVTEYQQ-GAELKWD 352
+ ++++ + NFFE RVTEY + WD
Sbjct: 285 LDQILNGVEHTNFFENRVTEYTRSATTGSWD 315
>gi|271967540|ref|YP_003341736.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
43021]
gi|270510715|gb|ACZ88993.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
43021]
Length = 331
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 105/330 (31%), Positives = 176/330 (53%), Gaps = 10/330 (3%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L+ D+ L P++Y +E+Y +A N W EV + DLA +T +ER +I
Sbjct: 2 LLDPGMDL-TLRPMRYPEFYERYRAAIRNTWTVEEVDLNSDLAD---LARMTPEERHLIN 57
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
R + FFA+ +S+VANN+VL +Y+H++ PE R YL RQ FEEAVH + ++ + D
Sbjct: 58 RLVAFFATGDSIVANNLVLNLYQHVNAPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDHD 117
Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
E F +PSI KA + ++ +L +++ + FL +L F EG++
Sbjct: 118 ERVKAFAAVEHIPSIRNKAEFCFRWIDSLGGLD-RLESREDRRAFLLNLICFAACIEGLF 176
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY FA + + G+A ++ RDES+H+ F V++ ++ E P L+ + +
Sbjct: 177 FYGAFAYVYWFRSRGLLSGLATGTNWVFRDESMHMEFAFSVVDTVRAEEPDLFDDKLGAQ 236
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
M+ EA E+A+A + G G+N QY++++A++R ++ + T NPF
Sbjct: 237 VTQMIEEAVEAELAFAADLCGDGMSGMNVEQMRQYLEYVADQRLVRLRFPVRYG-TANPF 295
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+M E+ D+++ NFFE RV+ YQ E
Sbjct: 296 AFM-ELQDVQELANFFERRVSAYQVAVEGN 324
>gi|257792030|ref|YP_003182636.1| ribonucleotide-diphosphate reductase subunit beta [Eggerthella
lenta DSM 2243]
gi|317488666|ref|ZP_07947206.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA]
gi|257475927|gb|ACV56247.1| Ribonucleoside-diphosphate reductase [Eggerthella lenta DSM 2243]
gi|316912225|gb|EFV33794.1| ribonucleotide reductase [Eggerthella sp. 1_3_56FAA]
Length = 347
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 96/350 (27%), Positives = 162/350 (46%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ +V D+RM+ + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 7 KPLFNPLGDTDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDIK 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
++ L ER + L F +SL + N+ A+ +++ E L Q F+E V
Sbjct: 67 DYR---KLPAAERRAYDKILSFLIFLDSLQSANLP-AVGEYITANEVNLCLAIQTFQETV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ R K + L + D E L
Sbjct: 123 HSQSYSYMLDTICEP------QERNDVLYQWKEDEHLLARNEFIGNLYNQFQDDKSPEAL 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ V + EG++FY+GF +LGR N M G ++ +YI RDE+ HL +++ ++K
Sbjct: 177 ARVLVANYILEGVYFYSGFMFFYNLGRNNLMPGSVQEIRYINRDENTHLWLFRNILLELK 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+ E ++ R M+ E EI + H + GLN Y+Q++ N RC Q
Sbjct: 237 EEEPELFAPELVEEYRAMIKEGCEQEIRWGHYAIGDDVAGLNKQMVTDYIQYLGNLRCAQ 296
Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G EPL++ E W+S+ + + +FFE R T Y + + L D
Sbjct: 297 LGFEPLYEGHEREPESMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346
>gi|85710107|ref|ZP_01041172.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1]
gi|85688817|gb|EAQ28821.1| ribonucleotide reductase beta subunit [Erythrobacter sp. NAP1]
Length = 346
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 83/323 (25%), Positives = 152/323 (47%), Gaps = 18/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
N P +Y WA+E + HWMP EVP+ +D W LT+ ER ++ + FF
Sbjct: 7 RNTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQ--NLTEHERNLLTQIFRFFT 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
++ V + R E + L + E VH + +++ ++G+ E E ++ +
Sbjct: 65 QADVEVQDCYHDKYGRVFKPTEIKMMLAAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + K N+ Q+ + D D++ + L +F EG+ + FA +++
Sbjct: 124 DYEEMADKHNYMHQF------------SVDTDEDIARTLAMFGGFTEGLQLFASFAMLMN 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
R NKM G+ + + +RDE+LH I + + E TK ++ + +
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDETLHCEGIIKMFHTFCEERD-CLTKAVKEDIIDICQKTVR 230
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
LE A+ G G+ A ++Y+++IA+ R Q+ L+P++ E+P PW+S +++
Sbjct: 231 LEDAFIDLAFEMGPVEGMTAKDIKKYIRYIADWRLGQLNLQPIYMIDEHPLPWLSPLLNG 290
Query: 330 KKEKNFFETRVTEYQQ-GAELKW 351
+ NFFE R TEY + + W
Sbjct: 291 VEHANFFEARATEYSKGATKGNW 313
>gi|149185037|ref|ZP_01863354.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21]
gi|148831148|gb|EDL49582.1| ribonucleotide reductase beta subunit [Erythrobacter sp. SD-21]
Length = 352
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 81/323 (25%), Positives = 149/323 (46%), Gaps = 18/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y WA+E + HWMP EVP+ +D W LT+ ER ++ + FF
Sbjct: 7 RKTYKPFEYPWAYEFWKRQQQIHWMPEEVPLGEDCRDWAQ--KLTEHERNLLTQIFRFFT 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
++ V + R E + L + E VH + +++ ++G+ E E ++ +
Sbjct: 65 QADVEVQDCYHDKYGRVFKPTEVKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YSAFL 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + K N+ Q+ D D++ + L +F EGM + FA +++
Sbjct: 124 DYEEMADKHNYMQQF------------GVDNDEDIARTLAMFGAFTEGMQLFASFAMLMN 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
R NKM G+ + + +RDESLH I + ++ E TK ++ + +
Sbjct: 172 FPRFNKMKGMGQIVSWSIRDESLHCEGIIRMFHEFVRERD-CLTKAVKEDIIDICQKTVR 230
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
LE + G G+ ++Y+++IA+ R Q+ L+P++ ++P PW++ +I+
Sbjct: 231 LEDNFIDLAFEMGPVSGMTPKDIKKYIRYIADWRLGQLNLDPIYMVDDHPLPWLAPLING 290
Query: 330 KKEKNFFETRVTEYQQ-GAELKW 351
+ NFFE R TEY + + W
Sbjct: 291 VEHANFFEQRATEYSKGATKGDW 313
>gi|295691241|ref|YP_003594934.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC
21756]
gi|295433144|gb|ADG12316.1| Ribonucleoside-diphosphate reductase [Caulobacter segnis ATCC
21756]
Length = 346
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 83/320 (25%), Positives = 141/320 (44%), Gaps = 18/320 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P +Y WA++ + HWMP EVP+ +DL W L D ER ++ + FF S+
Sbjct: 19 YKPFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSD 76
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V +N + R E + L A E +H + ++ ++G+ E E F+ + E
Sbjct: 77 VEVQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYE 135
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ K ++ T D++ + + L +F EG+ + FA +++ R
Sbjct: 136 AMKDKHDYMQ------------TFGVDSNADICRTLAMFGGFTEGLQLFASFAMLMNFPR 183
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDESLH + I + + E TK LE
Sbjct: 184 FNKMKGMGQIVSWSIRDESLHCDGIIKLYHAFNKET-GAVTKAVADDIVDCCKHVVGLED 242
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ G G+ + Y++FIA+ R Q+ L ++ ENP PW+ ++ +
Sbjct: 243 KFIDLAFEAGEIQGMTPDDIKSYIRFIADWRLRQLQLPEVYGVKENPLPWLQSLLSGVEH 302
Query: 333 KNFFETRVTEYQQ-GAELKW 351
NFFE R TEY + + W
Sbjct: 303 ANFFEARATEYSKAATKGSW 322
>gi|194319980|pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B
gi|194319981|pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B
Length = 326
Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats.
Identities = 88/324 (27%), Positives = 149/324 (45%), Gaps = 28/324 (8%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E + +++ +L S + P++Y W+ Y A + W EV + DL W N
Sbjct: 28 ESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 84
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS +
Sbjct: 85 LKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 144
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D + LFN +P + KA+WAL++ + +
Sbjct: 145 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA-------------DRKSTFGERV 191
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 192 VAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 248
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
K +++ R ++ +A +E + E +P G +G+N +QY++F+A+R ++G
Sbjct: 249 ----KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS 304
Query: 311 PLFKYTENPFPWMSEVIDLKKEKN 334
+F ENPF +M E I L+ + N
Sbjct: 305 KVF-QAENPFDFM-ENISLEGKTN 326
>gi|323692021|ref|ZP_08106269.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
WAL-14673]
gi|323503944|gb|EGB19758.1| ribonucleoside-diphosphate reductase [Clostridium symbiosum
WAL-14673]
Length = 347
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ + ++ +RM+N + ++N +KY W Y A NN W+P E+ + D+ +
Sbjct: 9 LFNPDGDTDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDVKDY 68
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
LT ER + L F +S+ N+ AI +++ E L Q F+EAVHS
Sbjct: 69 ---PLLTVGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQIFQEAVHS 124
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ Y++ ++ R K + L T + KD
Sbjct: 125 QSYSYMLDTICEP------QTRNEVLYQWKNDGHLLARNTFIGGLYNEFQKDKTPFAFVK 178
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF +LGR +KM G A++ +YI RDE+ HL +I +++ E
Sbjct: 179 TLIANYILEGIYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFGSIIRELQTE 238
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+++E R M+ E EIA+ + GL Y++++ N RC +G
Sbjct: 239 EPSLFSREKTDCYREMIREGCEQEIAWGCYAIGDEVPGLTKQMITDYIRYLGNLRCSNLG 298
Query: 309 LEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
EPL+ + W+S+ + + +FFE R T Y + + L D
Sbjct: 299 FEPLYDGYVHEPETMAWVSQYSNANMIKTDFFEARSTAYAKSSALVDD 346
>gi|323486976|ref|ZP_08092290.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum
WAL-14163]
gi|323399688|gb|EGA92072.1| hypothetical protein HMPREF9474_04041 [Clostridium symbiosum
WAL-14163]
Length = 347
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ + ++ +RM+N + ++N +KY W Y A NN W+P E+ + D+ +
Sbjct: 9 LFNPDGDTDLQSRRMINGNTTNLNDFNNMKYTWVSGWYRQAMNNFWVPEEINLGTDVKDY 68
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
LT ER + L F +S+ N+ AI +++ E L Q F+EAVHS
Sbjct: 69 ---PLLTVGERRAYDKILSFLVFLDSIQTANLP-AIGEYITANEINLCLSIQIFQEAVHS 124
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ Y++ ++ R K + L T + KD
Sbjct: 125 QSYSYMLDTICEP------QTRNEVLYQWKNDGHLLARNTFIGGLYNEFQKDKTPFAFVK 178
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF +LGR +KM G A++ +YI RDE+ HL +I +++ E
Sbjct: 179 TLIANYILEGIYFYSGFMFFYNLGRNHKMPGSAQEIRYINRDENTHLWLFGSIIRELQTE 238
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+++E R M+ E EIA+ + GL Y++++ N RC +G
Sbjct: 239 EPSLFSREKTDCYREMIREGCEQEIAWGCYAIGDEVPGLTKQMITDYIRYLGNLRCSNLG 298
Query: 309 LEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
EPL+ + W+S+ + + +FFE R T Y + + L D
Sbjct: 299 FEPLYDGYAHEPETMAWVSQYSNANMIKTDFFEARSTAYAKSSALVDD 346
>gi|189184364|ref|YP_001938149.1| ribonucleotide-diphosphate reductase subunit beta [Orientia
tsutsugamushi str. Ikeda]
gi|189181135|dbj|BAG40915.1| ribonucleoside-diphosphate reductase beta chain [Orientia
tsutsugamushi str. Ikeda]
Length = 359
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 88/331 (26%), Positives = 156/331 (47%), Gaps = 20/331 (6%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+LNAR P Y WA++ + + HW+P EVP+ DD+ WK LT E+ ++
Sbjct: 18 LLNARP---IYKPFSYPWAYKAWHTQQKIHWLPEEVPLADDIKDWK--YNLTPGEKHLLT 72
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
+ FF ++ V N + R E + L + E +H + +++ ++G+ E
Sbjct: 73 QIFRFFTQADIEVNNCYMKHYARVFQPTEVQMMLSAFSNMETIHIAAYSHLLDTIGMPET 132
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E + + + ++ K ++ ++ D +E L VF EG+ +
Sbjct: 133 E-YQAFMKYKAMKDKYDYMQRF------------NVDNKEEIATTLAVFGAFTEGVQLFA 179
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
FA +L+ R NKM G+ + + +RDE+LH N I + E P +WT++ + +
Sbjct: 180 SFAILLNFPRYNKMKGMGQIITWSVRDETLHTNSIITLFKTFIQEYPEVWTEQLKSRIYE 239
Query: 264 MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
E A+ G GL A ++Y+++IA+RR Q+GL+ + +NP W
Sbjct: 240 ACCTIIHFEDAFIDLAFEVGGVEGLEARDVKKYIRYIADRRLLQLGLKENYLIEQNPLTW 299
Query: 323 MSEVIDLKKEKNFFETRVTEYQQ-GAELKWD 352
+ ++++ + NFFE RVTEY + WD
Sbjct: 300 LDQILNGVEHTNFFENRVTEYTRSATTGSWD 330
>gi|157952945|ref|YP_001497837.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella
virus NY2A]
gi|155123172|gb|ABT15040.1| hypothetical protein NY2A_B641R [Paramecium bursaria Chlorella
virus NY2A]
Length = 324
Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 95/334 (28%), Positives = 161/334 (48%), Gaps = 29/334 (8%)
Query: 21 DKRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ +L+ P++Y W Y A W EVP+ D+A W+ L +DER
Sbjct: 4 QEPILSDNGSRKFSAFPIQYHDLWNMYKKAVATFWTTEEVPLNADVADWRE--KLNNDER 61
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
IK LGFFA S+ +V N+ + PE RQ+ Q F E+VHS + +I +L
Sbjct: 62 HFIKHILGFFAGSDGIVMENLQTNFGVEVMAPEARQFYAYQTFNESVHSEMYALLIDALI 121
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
DE E LF+ +P++ KA WA ++ ++ F + L + +
Sbjct: 122 SDEQERLDLFDAIETIPAVHNKAKWAQKWL-------------KPERSFAERLVAW-ICV 167
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG+ F F + L M G+ ++I RDE LH FG + ++++ +
Sbjct: 168 EGILFSGSFCALFWLRNKGVMPGLCLSNEFISRDEGLHQQFGELMYSKLQNKLSF----- 222
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ + ++ EA E + + +P +G+NA QY++F+A+R +G E ++ +
Sbjct: 223 --ETIKQIIMEAVTNEKEFICDAIPCSMIGMNADLMNQYIEFVADRIFTALGYEKVYN-S 279
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+NPF +M E+I L+ + NFFE RV++YQ+ +
Sbjct: 280 KNPFAFM-ELISLEGKTNFFEKRVSDYQRPGVMN 312
>gi|291276761|ref|YP_003516533.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
mustelae 12198]
gi|290963955|emb|CBG39794.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
mustelae 12198]
Length = 344
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 90/352 (25%), Positives = 174/352 (49%), Gaps = 13/352 (3%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
I E +V+D+++ + L +KY WA++ + + N W P EV
Sbjct: 3 DVRVDRKKIYNPESIESVNDRKIFGGNPTSMFDLNKIKYQWAYDLWKTMLANTWFPEEVS 62
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M +D + + LT E+L R L +SL NN++ + ++++PE L+RQ
Sbjct: 63 MNEDKRDYNNL--LTAQEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQ 120
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
A+EEA+HS ++ ++ S+ + E+++M+R + +K ++ L+ ++
Sbjct: 121 AYEEALHSQSYAVMVESISANTDEIYDMWRVDMQLKSKNDYIANVYMKLA--------QN 172
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ + + EG++FY+GFA +L KM+G ++ ++I RDE HL +
Sbjct: 173 PTERNIVKAMFANQILEGIYFYSGFAFFYALASTGKMLGSSQMIRFIQRDEVTHLILFQN 232
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I +K E P L+ K+ +++ M A +E A+ +GL QY+Q++A
Sbjct: 233 MIRTLKKERPDLFDKDLEEEIVEMFRRAVEIEAAWGEYITQGQILGLTGEVIHQYIQYLA 292
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKW 351
++R ++G+ L+ E+P W+ + ++ NFFE +VT Y +G+ +
Sbjct: 293 DQRLSKVGMPKLYNV-EHPIKWVEQYASFNEQRTNFFEAKVTNYAKGSLIDD 343
>gi|160937686|ref|ZP_02085046.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC
BAA-613]
gi|158439331|gb|EDP17083.1| hypothetical protein CLOBOL_02576 [Clostridium bolteae ATCC
BAA-613]
Length = 347
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ + + + +RM+ + ++N +KY WA Y A NN W+P E+ + DL
Sbjct: 7 KPLFNPQGDTDKNSRRMIGGNTTNLNDFNNMKYTWASSWYRQAMNNFWIPEEINLSADLK 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+K LT ER + L F +S+ N+ I ++++ E L Q F+EAV
Sbjct: 67 DYK---NLTAAERTAYDKILSFLVFLDSIQTANLP-CIAQYITANEVNLCLTIQGFQEAV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ S+ + R+ K + L T + + D L
Sbjct: 123 HSQSYSYMLDSICSP------VERDRILYQWKEDEHLLRRNTFIGNLYNEFQEKKDDVTL 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +++
Sbjct: 177 LRVIMANYILEGIYFYSGFMFFYNLGRGGKMPGSVQEIRYINRDENTHLWLFRSMIAELR 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T + R+ML E EI + + GL Y++++ N R
Sbjct: 237 KEEPQLFTPKMVDMLRSMLEEGVAQEIQWGCYVIGDDVPGLTREMVTDYIRYLGNLRWSG 296
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G L++ Y E P W+++ + + +FFE + T Y + A + D
Sbjct: 297 LGFGTLYEGYDEEPQSMKWVNQYSNANMVKTDFFEAKSTAYAKSAAIVDD 346
>gi|307719930|ref|YP_003891070.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM
16294]
gi|306978023|gb|ADN08058.1| Ribonucleoside-diphosphate reductase [Sulfurimonas autotrophica DSM
16294]
Length = 340
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 99/349 (28%), Positives = 172/349 (49%), Gaps = 15/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I + NV+D+++ + +L +KY WA+ + NN W P EV M D
Sbjct: 2 NRKQIYNPDSTENVNDRKVFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ +K LTD E+ + L +SL NN++ + +++ PE L+RQ+FEE
Sbjct: 62 VNDYKQ---LTDAEKTAYDKALSQLIFMDSLQTNNLIDNVNPYVTAPEINLILVRQSFEE 118
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HS ++ ++ S+ + E+++++R + K + Q L+ K+
Sbjct: 119 ALHSQSYAVMVDSISTNSEEIYDLWRRDMMLKHKNDTIAAVYQELA--------KNPTDS 170
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ EG++FY+GF I +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 171 NFVKACFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINT 230
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E P L+T E + M EA LE + +GL EQY+Q++A+ R
Sbjct: 231 LRKERPDLFTDELRADVIEMFKEAVKLETEWGKYITQGQILGLTDEIVEQYIQYLADDRL 290
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
+ +G + L+ + NP W+ + ++ NFFE VT Y +G+ L +D
Sbjct: 291 NSVGFDKLYNVS-NPIKWVDDFAKFNDQKTNFFEGTVTNYSKGS-LSFD 337
>gi|163955147|ref|YP_001648251.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5]
gi|163638596|gb|ABY27955.1| hypothetical protein OsV5_174r [Ostreococcus virus OsV5]
Length = 322
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 91/339 (26%), Positives = 151/339 (44%), Gaps = 31/339 (9%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
V + +L + + + PLKY WE Y A ++W EV + DL WK+ L +
Sbjct: 2 VEEEYDPILASTLNRFTVFPLKYPHLWELYKKAQMSNWTAEEVDLSKDLDDWKT---LNE 58
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+E+ IK L FFA S+ +V NI + E R + Q E VH T+ +I
Sbjct: 59 NEQKFIKYILAFFAGSDGIVFENINNNFADEVQISEARSFYAYQCHNEMVHGETYSKLID 118
Query: 137 SLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
D ELF + VP I KA WA+++ D + +
Sbjct: 119 KYIKDPSEKKELFEAIQTVPCIEKKAQWAMKW-------------FDTKSRSFAERLFAF 165
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F F I L + M G+ + I RDE LH F +++ ++
Sbjct: 166 ACVEGIFFSGSFCAIFWLKKRGLMPGLCFSNELISRDEGLHQEFAVELFKTLRN------ 219
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+ ++ EA +E + + +P +G+N+ +Y++++++R QIG+ ++
Sbjct: 220 -RPGVDTIHAIVREAVEIEKGFILDALPCNLIGMNSEKMSEYIEYVSDRLLKQIGVPTIW 278
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
++NPF +M E I L + NFFE RV +Y +L D
Sbjct: 279 N-SKNPFDFM-ENISLDGKTNFFEKRVGDY---GKLDDD 312
>gi|225873704|ref|YP_002755163.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium
capsulatum ATCC 51196]
gi|225791613|gb|ACO31703.1| ribonucleoside-diphosphate reductase, beta subunit [Acidobacterium
capsulatum ATCC 51196]
Length = 340
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 100/321 (31%), Positives = 174/321 (54%), Gaps = 8/321 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y ++ + N W EV Q DL K + L+ E +I+R + FFA+
Sbjct: 18 TLRPMRYPVFYDMFRDGIKNTWTVEEVDFQTDLVDLKQR--LSPAEVHLIQRLVAFFATG 75
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY--- 149
+S+V+NN+VL +Y+H+++PE R YL RQ +EEAVH + ++ + D +
Sbjct: 76 DSIVSNNLVLNLYKHINSPEARLYLSRQLYEEAVHVQFYLTLLDNYVPDPEARAAAFAAV 135
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI+ KA++ +++ ++ T++ ++FL +L F EG++F+ FA +
Sbjct: 136 ENIPSISKKADFCMKWMDSIQQLD-ELKTREHRRQFLLNLICFAACIEGLFFFAAFAYVY 194
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
L + G+A ++ RDES HL F +V+N ++ + P LW + + MLHEA
Sbjct: 195 FLRSKGLLHGLASGTNWVFRDESCHLEFAFEVVNVVRSQEPDLWDAQLEADIVEMLHEAV 254
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E +A + + G GL+ QY+ ++A+ R ++G+ P F +NPF +M E+ D+
Sbjct: 255 DAETQFAEDLLSGGVAGLSVRDMRQYLGYVADSRLQRLGIAPAFGV-KNPFSFM-ELQDV 312
Query: 330 KKEKNFFETRVTEYQQGAELK 350
++ NFFE RV+ YQ +
Sbjct: 313 QELTNFFERRVSAYQTAVAGE 333
>gi|168702494|ref|ZP_02734771.1| ribonucleoside-diphosphate reductase, beta subunit [Gemmata
obscuriglobus UQM 2246]
Length = 332
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 102/320 (31%), Positives = 169/320 (52%), Gaps = 8/320 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E Y A N W EV DLA + +T ER +I R + FFA+
Sbjct: 10 TLRPMRYPPFFEMYKDAIKNTWTVDEVDFSTDLADLR--GRVTPAERHLIHRLVAFFATG 67
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR-- 150
+S+V NN+VL +Y+H++ PE R YL RQ +EEA+H + ++ + D +
Sbjct: 68 DSIVGNNLVLNLYKHVNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDMAAREAAFAAV 127
Query: 151 -EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA++ ++ ++ T+ + FL +L F EG++F+ FA +
Sbjct: 128 DNIPSIKLKADFCFKWIDSIEGLD-RLETRAHRRAFLLNLVCFAACIEGLFFFAAFAYVY 186
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
L + G+A ++ RDES H+ F VI+ ++ E P L+ E + + ML EA
Sbjct: 187 FLRSKGLLHGLATGTNWVFRDESAHMAFAFRVIDTVRREEPDLFDAELEAQIVAMLREAV 246
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E A+A + + +G GL+ Y++++A+RR +G+ P+F +NPF +M + D+
Sbjct: 247 ECETAFARDVLGQGVAGLSLADLRSYLEYVADRRLESLGIAPVFG-AKNPFGFMD-LQDV 304
Query: 330 KKEKNFFETRVTEYQQGAEL 349
++ NFFE RV+ YQ G
Sbjct: 305 QELTNFFERRVSAYQLGVTG 324
>gi|22788780|ref|NP_690492.1| Rr2 [Heliothis zea virus 1]
gi|22671540|gb|AAN04367.1|AF451898_72 Rr2 [Heliothis zea virus 1]
Length = 333
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 92/328 (28%), Positives = 153/328 (46%), Gaps = 24/328 (7%)
Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
L S L P++Y WE Y A + W EV + DL W+++ LT+ ER I
Sbjct: 13 LEEPSSRFTLFPIRYHDIWEMYKKAQASFWTVEEVDLSKDLYDWETR--LTETEREFISH 70
Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142
L FFA S+ +V +N++ + L+ PE + Q E VHS + +I D
Sbjct: 71 ILAFFAGSDGIVNDNLLTRFSQELTIPEVSCFYGFQIMIENVHSEMYSTLIDMYIRDPQR 130
Query: 143 -GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
LFN VPSI KA W +++ D D+ D V + EG++F
Sbjct: 131 KHMLFNAIDTVPSIRKKAQWVIRWI-------------DDDKSSYADRLVAFAAVEGIFF 177
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
FA I L + M G+ ++I RDE LH +F I + + +K
Sbjct: 178 SGSFAAIFWLKKRGLMPGLTHSNEFISRDEGLHCDFAILLFRNYLR----PECRSSDEKV 233
Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
++ +A +E + E++P +G+N +Y++F+A+R +++ ++ +NPF
Sbjct: 234 INIVTDAVRIEQEFLTESLPVSMIGMNCKLMCEYIEFVADRLLYELIGRKIYN-AKNPFD 292
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+M+ I L+ + NFFE +V+EY++
Sbjct: 293 FMTS-ISLEGKTNFFEKKVSEYKRYGVG 319
>gi|229816571|ref|ZP_04446870.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM
13280]
gi|229807906|gb|EEP43709.1| hypothetical protein COLINT_03629 [Collinsella intestinalis DSM
13280]
Length = 352
Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats.
Identities = 91/350 (26%), Positives = 158/350 (45%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ ++V D+RM+ + ++N +KY W Y A NN W+P E+ + D+
Sbjct: 12 KPLFNPNGDLDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINLTQDVK 71
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L++ ER + L F +SL + N+ I +++ E L QAF+E+V
Sbjct: 72 DY---PRLSEAERAAYDKILSFLVFLDSLQSANLP-NIAEYITANEVNLCLSIQAFQESV 127
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ R K + L T + + D
Sbjct: 128 HSQSYSYMLDTICDPAK------RNEILYQWKTDKHLLARNTFIGDLYNEFQEHRDARTF 181
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++FY+GF +L R KM G A++ +YI RDE+ HL +I +++
Sbjct: 182 LRVLMANYILEGVYFYSGFMFFYNLARMGKMPGSAQEIRYINRDENTHLWLFRSIILELQ 241
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L++ E R ML E EIA+ + GL E Y++++ N R
Sbjct: 242 KEEPQLFSNENVTMLREMLEEGVRQEIAWGRYVLGDAIPGLTGDMVEGYIKYLGNLRWSS 301
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G L++ Y P W+S+ + + +FFE + T Y + L D
Sbjct: 302 LGFGQLYEGYRTEPADMAWVSQYSNANMVKTDFFEAKSTAYAKSTALVDD 351
>gi|317122809|ref|YP_004102812.1| ribonucleoside-diphosphate reductase [Thermaerobacter marianensis
DSM 12885]
gi|315592789|gb|ADU52085.1| Ribonucleoside-diphosphate reductase [Thermaerobacter marianensis
DSM 12885]
Length = 336
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 120/327 (36%), Positives = 190/327 (58%), Gaps = 5/327 (1%)
Query: 23 RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
R+L + QL PL+Y WA+ N W P E+P+ DD+ W+ LTDDER
Sbjct: 11 RLLGGDPLEPIQLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWE--LRLTDDERRA 68
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
++ LGFF ESLV +N+V++IY L+ PE R YL RQ +EEA H+ F+Y++ +L +D
Sbjct: 69 VELLLGFFNPMESLVTHNLVMSIYPLLTPPEVRLYLARQIWEEANHTMAFEYVLKTLPVD 128
Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
+F +R+VP+I AK + + T+ L T + Q FL++L +Y+V EG++F
Sbjct: 129 RERVFAAHRDVPAIRAKEAFQQELTRQLLV-RPDVSTLEGRQAFLRNLIGYYIVLEGVFF 187
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
Y GF + R N + G+A ++++DESLHL+FGI +I + E+P L T EF ++
Sbjct: 188 YGGFLFAYTFRRRNLLKGLATLVDWVLKDESLHLSFGIHLITTLLEEHPELMTPEFAREV 247
Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
+ ++ A LE Y +P+ +G++A Y++++ +RR ++GL P F T NP
Sbjct: 248 KGLILRAVELERDYNRALLPRPILGVSADYLNAYIEYVTDRRLDELGLGPHFG-TPNPAQ 306
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE 348
WM+ +D+ + NFFE R Y+ A+
Sbjct: 307 WMATEVDVPEIVNFFEARNIHYEVAAD 333
>gi|16124515|ref|NP_419079.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter
crescentus CB15]
gi|221233200|ref|YP_002515636.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter
crescentus NA1000]
gi|13421393|gb|AAK22247.1| ribonucleoside-diphosphate reductase, beta subunit [Caulobacter
crescentus CB15]
gi|220962372|gb|ACL93728.1| ribonucleoside-diphosphate reductase beta chain [Caulobacter
crescentus NA1000]
Length = 347
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 82/320 (25%), Positives = 143/320 (44%), Gaps = 18/320 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P +Y WA++ + HWMP EVP+ +DL W L D ER ++ + FF S+
Sbjct: 19 YKPFRYPWAYDFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSD 76
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V +N + R E + L A E +H + ++ ++G+ E E F+ + E
Sbjct: 77 VEVQDNYMERYGRVFKPTEVKMMLASFANMETIHIAAYALLLETIGMPETE-FSAFMEYE 135
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ AK ++ T D++ + + L +F EG+ + FA +++ R
Sbjct: 136 AMKAKHDYMQ------------TFGVDSNADICRTLAMFGGFTEGLQLFASFAMLMNFPR 183
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDESLH + I + + E TK +E
Sbjct: 184 FNKMKGMGQIVSWSIRDESLHCDGIIKLYHAFNKET-GAVTKAVADDIVDCCKTVVGMED 242
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ G G+ + Y++F+A+ R Q+ L ++ ENP PW+ ++ +
Sbjct: 243 NFIDLAFEAGDIQGMTPDDIKAYIRFVADWRLRQLHLPEVYGVKENPLPWLQSLLSGVEH 302
Query: 333 KNFFETRVTEYQQ-GAELKW 351
NFFE R TEY + + +W
Sbjct: 303 ANFFEARATEYSKAATKGQW 322
>gi|56551339|ref|YP_162178.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas
mobilis subsp. mobilis ZM4]
gi|241760992|ref|ZP_04759081.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|260753042|ref|YP_003225935.1| ribonucleotide-diphosphate reductase subunit beta [Zymomonas
mobilis subsp. mobilis NCIMB 11163]
gi|56542913|gb|AAV89067.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241374611|gb|EER64072.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|258552405|gb|ACV75351.1| Ribonucleoside-diphosphate reductase [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 345
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 79/321 (24%), Positives = 147/321 (45%), Gaps = 18/321 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA+E + HW+P EVP+ +D W L+D ER ++ + FF +
Sbjct: 9 VYKPFEYPWAFEFWQRQQQLHWLPEEVPLGEDCRDWAQ--KLSDHERNLLTQIFRFFTQA 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + R E + L + E VH + +++ ++G+ E E ++ + +
Sbjct: 67 DVEVQDCYFDKYGRIFRPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQY 125
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ K ++ T +DQ+ + L + EG+ + FA +++
Sbjct: 126 KEMKDKHDY------------LATFDVGSDQDIARTLAMMGGFTEGLQLFASFAMLMNFP 173
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R NKM G+ + + +RDESLH I + + E TK+ + + +E
Sbjct: 174 RFNKMKGMGQIVSWSVRDESLHCEGIIRLFHTFCQER-QCLTKQVKDDILNICQRTVRIE 232
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
A+ G G+ ++Y+++IA+ R Q+GL P++ E+P PW++ +++ +
Sbjct: 233 DAFIDLVFEMGPVEGMTPKEIKKYIRYIADWRLGQLGLSPIYMIEEHPLPWLTPLLNGVE 292
Query: 332 EKNFFETRVTEYQQ-GAELKW 351
NFFETR TEY + + W
Sbjct: 293 HANFFETRSTEYSKAATKGDW 313
>gi|210631890|ref|ZP_03297102.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279]
gi|210159815|gb|EEA90786.1| hypothetical protein COLSTE_00992 [Collinsella stercoris DSM 13279]
Length = 352
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 93/350 (26%), Positives = 160/350 (45%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ + ++V D+RM+ + ++N +KY W Y A NN W+P E+ + D+
Sbjct: 12 KPLFNPDGDLDVRDRRMIGGNTTNLNDFNNMKYPWVSSWYRQAMNNFWIPEEINLTQDVK 71
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ LT ER + L F +SL + N+ I +++ E L QAF+E+V
Sbjct: 72 DY---PRLTAAERAAYDKILSFLVFLDSLQSANLP-NIAEYITANEVNLCLSIQAFQESV 127
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ R K + L T + + D
Sbjct: 128 HSQSYSYMLDTICDPAK------RNEILYQWKTDEPLLARNTFIGNLYNEFQERRDARTF 181
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++
Sbjct: 182 LRVLMANFILEGVYFYSGFMFFYNLARMGKMPGSAQEIRYINRDENTHLWLFRNIILELQ 241
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T E + R ML E EIA+ + GL E Y++++ N R
Sbjct: 242 KEEPQLFTSENVEMLRQMLEEGVRQEIAWGRYVLGDAIPGLTGDMVEGYIKYLGNLRWSS 301
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G L++ Y P W+S+ + + +FFE + T Y + L D
Sbjct: 302 LGFGQLYEGYRSEPEDMAWVSQYSNANMVKTDFFEAKSTAYAKSTALVDD 351
>gi|148554425|ref|YP_001262007.1| ribonucleotide-diphosphate reductase subunit beta [Sphingomonas
wittichii RW1]
gi|148499615|gb|ABQ67869.1| Ribonucleoside-diphosphate reductase [Sphingomonas wittichii RW1]
Length = 350
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 79/321 (24%), Positives = 151/321 (47%), Gaps = 18/321 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA+E + HW+P EVP+ +D W LTD ER ++ + FF +
Sbjct: 9 TYKPFEYPWAFEYWKRQQQLHWLPEEVPLGEDCRDWAQ--KLTDHERNLLTQIFRFFTQA 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + R E + L + E VH + +++ ++G+ E E ++ + +
Sbjct: 67 DVEVQDCYHDKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPETE-YSAFLQY 125
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ K ++ +T D D++ + L +F EG+ + FA +++
Sbjct: 126 KEMKDKHDY------------LSTFGVDTDEDIARTLAMFGGFTEGLQLFASFAMLMNFP 173
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R NKM G+ + + +RDE+LH + + + E T + M + +E
Sbjct: 174 RFNKMKGMGQIVTWSIRDETLHCEGIVRLFHAFVKERD-CLTASVKDDILDMCQKTVRIE 232
Query: 273 IAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
A+ G V G+ ++Y+++IA+ R Q+GL+P++ ++P PW++ +++ +
Sbjct: 233 DAFIDLVFEMGPVNGMTPKDIKKYVRYIADWRLGQLGLKPIYMIEDHPLPWLAPLLNGVE 292
Query: 332 EKNFFETRVTEYQQ-GAELKW 351
NFFETR TEY + + +W
Sbjct: 293 HANFFETRATEYSKAATKGQW 313
>gi|325831705|ref|ZP_08164922.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp.
HGA1]
gi|325486576|gb|EGC89025.1| ribonucleoside-diphosphate reductase, beta subunit [Eggerthella sp.
HGA1]
Length = 347
Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats.
Identities = 97/350 (27%), Positives = 163/350 (46%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ +V D+RM+ + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 7 KPLFNPLGDTDVLDRRMIGGNTTNLNDFNNMKYEWVSDWYRQAMNNFWIPEEINLGVDIK 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
++ L ER + L F +SL + N+ A+ +++ E L Q F+E V
Sbjct: 67 DYR---KLPASERRAYDKILSFLIFLDSLQSANLP-AVGEYITANEVNLCLAIQTFQETV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ R K + L + D E L
Sbjct: 123 HSQSYSYMLDTICEP------QERNDVLYQWKEDEHLLARNEFIGNLYNQFQDDKSPEAL 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ V + EG++FY+GF +LGR N M G ++ +YI RDE+ HL +++ ++K
Sbjct: 177 ARVLVANYILEGVYFYSGFMFFYNLGRNNLMPGSVQEIRYINRDENTHLWLFRNILLELK 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T E ++ R M+ E EI + H + GLN Y+Q++ N RC Q
Sbjct: 237 EEEPELFTPELVEEYRAMIKEGCEQEIRWGHYAIGDEVAGLNKQMVTDYIQYLGNLRCTQ 296
Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G EPL++ E W+S+ + + +FFE R T Y + + L D
Sbjct: 297 LGFEPLYEGHEREPESMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346
>gi|329888543|ref|ZP_08267141.1| ribonucleotide reductase, small chain family protein [Brevundimonas
diminuta ATCC 11568]
gi|328847099|gb|EGF96661.1| ribonucleotide reductase, small chain family protein [Brevundimonas
diminuta ATCC 11568]
Length = 348
Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats.
Identities = 83/316 (26%), Positives = 141/316 (44%), Gaps = 17/316 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P +Y WA++ + HWMP EVPM +D+ W L D ER ++ + FF ++
Sbjct: 22 YKPFRYPWAFDMWKKQQQVHWMPEEVPMGEDVKDWA--ANLNDGERNLLTQIFRFFTQAD 79
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V +N + R E + L A E +H + ++ ++G+ E E F + E
Sbjct: 80 IEVQDNYMERYGRVFKPTEVKMMLAAFANMETIHIAAYALLLETIGMPESE-FGAFMEYE 138
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ K ++ Q+ D+D + + L +F EG+ + FA +++ R
Sbjct: 139 AMKDKHDYMGQF------------GVDSDADICRTLAMFGGFSEGLQLFASFAMLMNFPR 186
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
+KM G+ + + +RDESLH I + + E TK +E
Sbjct: 187 QSKMKGMGQIVSWSVRDESLHCEGIIKLYHAFNKET-GAVTKAVADDIVDCCKTVIEMED 245
Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ G V G+ + Y++FIA+ R Q+ L ++ TENP PW+ ++ +
Sbjct: 246 KFIDLAFEMGPVNGMTPDDIKAYIRFIADWRLRQLHLPEVYGVTENPLPWLQALLSGVEH 305
Query: 333 KNFFETRVTEYQQGAE 348
NFFE R TEY + A
Sbjct: 306 ANFFEARATEYSKAAT 321
>gi|182419335|ref|ZP_02950587.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
butyricum 5521]
gi|237666940|ref|ZP_04526925.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182376666|gb|EDT74238.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
butyricum 5521]
gi|237658139|gb|EEP55694.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 344
Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats.
Identities = 98/348 (28%), Positives = 168/348 (48%), Gaps = 13/348 (3%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ + KR++N + ++N +KY W + Y NN W+P EV + DL
Sbjct: 6 KPLFNEFGDREITKKRLINGNTTNLNDFNNMKYTWVSDWYRQGMNNFWIPEEVNLSQDLK 65
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
++ L D+ER+ + L F +S+ N+ I +++ E L Q+F+EAV
Sbjct: 66 DYQ---NLLDEERIAYDKILSFLIFLDSIQTANLS-NINNYITASEVNLCLTIQSFQEAV 121
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ S+ E R K + L + + +E L
Sbjct: 122 HSQSYSYMLDSICSPEK------RNEILYQWKDDEILLNRNKFIGDLYNEFIDNPTEETL 175
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++
Sbjct: 176 LKTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQ 235
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
EN L+T+E + + R M+ EI + H + G+N E+Y++++ N+R +
Sbjct: 236 NENAELFTEEIKNELREMMKTGVEQEILWGHYVIGDKIQGINKKLIEEYIKYLGNKRLKE 295
Query: 307 IGLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
I LEPLF+ + NP PW+ + + +FFE R T Y + A L D
Sbjct: 296 INLEPLFEGHDVNPAPWVDRQSNANSVKTDFFEARSTAYAKAATLVDD 343
>gi|196233679|ref|ZP_03132520.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus
Ellin428]
gi|196222349|gb|EDY16878.1| Ribonucleoside-diphosphate reductase [Chthoniobacter flavus
Ellin428]
Length = 390
Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats.
Identities = 119/343 (34%), Positives = 186/343 (54%), Gaps = 5/343 (1%)
Query: 10 IQAGEKRVNVDDKRMLNA--RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
+ + R + KR++N +++N L PLKY A+ Y NHW P + M D
Sbjct: 43 LDKAKARARLAGKRVINGLRSAELNVL-PLKYHEAYRIYKQMKANHWEPDVIDMTRDSQQ 101
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
W + L+ ER +I+ +G+F+++E +V ++++ I +L+ E + LR EE++H
Sbjct: 102 WNT-GALSPKERWIIEMGVGYFSAAEGIVGDSVLHVIEDNLTAAELKHASLRHIAEESIH 160
Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +II SL +D E+ + ++PS+ K + ++ L T T + Q+F +
Sbjct: 161 MDSLLHIIGSLNIDLDEVTAKFSDIPSVQRKNAFITRHMPELKMGIDLTQTANK-QKFAK 219
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+F V EG FY FA ILSL R NKM GI + +QY +RDES H+ G ++ Q+
Sbjct: 220 AIFGITQVMEGTQFYALFAMILSLHRQNKMTGIGQMFQYTLRDESNHIELGRYILTQLIA 279
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
ENP +WT EF+ + + E LE + + +P+ VG+ Y+++ A+RR +
Sbjct: 280 ENPDIWTPEFRAELVEFMREGVELEKEFVRDCLPEDGVGMTQADFLTYVEYNADRRLAGL 339
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
L L NPF W+ EVI L+KEKNFFETRVTEYQ LK
Sbjct: 340 DLPALSGVKTNPFAWLDEVIFLRKEKNFFETRVTEYQTSGSLK 382
>gi|322510876|gb|ADX06189.1| putative ribonucleotide reductase small subunit [Organic Lake
phycodnavirus 2]
Length = 324
Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats.
Identities = 93/332 (28%), Positives = 156/332 (46%), Gaps = 28/332 (8%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ + +L + + P+ W+ Y + W P E+ D+ W N L D
Sbjct: 3 KKNTEPLLTEDDNRFVMFPVSDETIWKMYKKQVDCFWRPEEIDTSKDMTHW---NKLNTD 59
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+ IK L FFASS+ +V N+ L + E R + Q E +HS T+ +I S
Sbjct: 60 EQYFIKMILAFFASSDGIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDS 119
Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
D E LF+ P I K +WA+++ Q D F L +
Sbjct: 120 YIKDSDEKHKLFHSLEHFPCIKKKGDWAMKWIQ------------DKKSSFATRLVA-FA 166
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
EG++F F I L + M G+ + I RDE+LH F + + N+++ +
Sbjct: 167 CVEGIFFSGAFCSIYWLKKRGLMPGLTFSNELISRDEALHTEFAVYLYNRLEKKLN---- 222
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
++K R ++ EA +E + + +P +G+N+ QY++F+A+R Q+G + ++
Sbjct: 223 ---KKKVREIIEEAVTIEKEFIVDALPCRMIGMNSELMTQYIEFVADRLMMQLGCDVIY- 278
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
T NPF +M E+I L+++ NFFE+RV+EY
Sbjct: 279 ATNNPFDFM-ELISLEQKTNFFESRVSEYSLA 309
>gi|313903043|ref|ZP_07836438.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus
DSM 13965]
gi|313466767|gb|EFR62286.1| Ribonucleoside-diphosphate reductase [Thermaerobacter subterraneus
DSM 13965]
Length = 336
Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats.
Identities = 119/327 (36%), Positives = 188/327 (57%), Gaps = 5/327 (1%)
Query: 23 RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
R+L + QL PL+Y WA+ N W P E+P+ DD+ W+ LTDDER
Sbjct: 11 RLLGGDPLEPIQLFPLRYPWAYAHAQQGKRNTWFPEEIPLADDVRDWE--LRLTDDERRA 68
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
++ LGFF ESLV +N+V++IY L+ PE R YL RQ +EEA H+ F+Y++ +L +D
Sbjct: 69 VELLLGFFNPMESLVTHNLVMSIYPLLTPPEIRLYLARQIWEEANHTMAFEYVLKTLPVD 128
Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
+F +R VP+I AK + + T+ L T + Q FL++L +Y+V EG++F
Sbjct: 129 RERVFAAHRNVPAIRAKEAFQQELTRQLLV-RPDVSTLEGRQAFLRNLIGYYIVLEGVFF 187
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
Y GF + R N + G+A ++++DESLHL+FGI +I + E+P L T F ++
Sbjct: 188 YGGFLFAYTFRRRNLLKGLATLVDWVLKDESLHLSFGIHLITALLEEHPELMTPAFAREV 247
Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
+ ++ A LE Y +P+ +G++A Y++++ +RR ++GL P F T NP
Sbjct: 248 KGLILRAVELERDYNRALLPRPILGVSADYLNAYVEYVTDRRLDELGLGPHFG-TPNPAK 306
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE 348
WM+ +D+ + NFFE R Y+ A+
Sbjct: 307 WMATEVDVPEIVNFFEARNIHYEVAAD 333
>gi|258648774|ref|ZP_05736243.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
tannerae ATCC 51259]
gi|260851104|gb|EEX70973.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
tannerae ATCC 51259]
Length = 350
Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats.
Identities = 89/351 (25%), Positives = 156/351 (44%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
P+ KRM+N + ++N +KY W + Y A NN W+P E+ + DL
Sbjct: 9 RKPLFNEHGDTETAKKRMINGNTTNLNDFNNMKYKWVSDWYRQAMNNFWIPEEINLGQDL 68
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ + L ER + L F +S+ N+ + +++ E L Q F+EA
Sbjct: 69 KDY---SKLLPAERTAYDKILSFLIFLDSIQTANLP-NVSEYITASEVNLCLNIQTFQEA 124
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ ++ E R+ K + L + D
Sbjct: 125 VHSQSYSYMLDTICSPEE------RDAILFQWKNDPILLNRNKFIGDLYNAFMNDRSTFQ 178
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ V + EG++FY+GF +LGR KM G A++ +YI RDE+ HL ++ ++
Sbjct: 179 FMKVLVANYILEGIYFYSGFMFFYNLGRNGKMPGSAQEIRYINRDENTHLWLFRSILLEL 238
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E P ++T + R M+ + EI + + GL + Y++++ N R
Sbjct: 239 KKEAPEMFTPDKVDVYRQMIAQGVEEEIKWGEYVLGDKIEGLTSEMIRDYIKYLGNLRTT 298
Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G +PL+ Y + P W+S+ + + +FFE R T Y + + L D
Sbjct: 299 SLGFDPLYDGYDKEPPSMSWVSQYSNANMIKTDFFEARSTAYAKSSALIDD 349
>gi|78776214|ref|YP_392529.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurimonas
denitrificans DSM 1251]
gi|78496754|gb|ABB43294.1| Ribonucleoside-diphosphate reductase [Sulfurimonas denitrificans
DSM 1251]
Length = 340
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 100/349 (28%), Positives = 175/349 (50%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I E NV+D+R+ + +L +KY WA+ + NN W P EV M D
Sbjct: 2 NRKKIYNPESNENVNDRRIFGGNPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ +K +TD E+ + L +SL NNI+ I ++++PE L+RQA+EE
Sbjct: 62 VSDYKQ---ITDVEKASYDKALAQLIFMDSLQTNNIMDNINPYVTSPEINLILVRQAYEE 118
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HS ++ ++ ++ + E++ ++R + K + + + LS K+ +
Sbjct: 119 ALHSQSYAVMVDTISTNSKEIYELWRRDMMLKGKNDAIARVYEELS--------KNPTEH 170
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ EG++FY+GFA I +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 171 NFVKACFANQILEGIYFYSGFAYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNLINS 230
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E P L+ ++ +++ M EA LE+A+ +GL EQY+Q++A+ R
Sbjct: 231 LRKERPDLFNEKLKEEVIEMFKEAVALEVAWGKYITGGQILGLTDAIIEQYIQYLADDRL 290
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
+G L+ T NP W+ + ++ NFFE V Y +G+ D
Sbjct: 291 TSVGFAKLYNVT-NPIKWVDDFSKFNDQKTNFFEGTVANYSKGSLTFDD 338
>gi|325475472|gb|EGC78653.1| ribonucleoside-diphosphate reductase [Treponema denticola F0402]
Length = 351
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 89/350 (25%), Positives = 162/350 (46%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+ + ++M+ + ++N +KY WA + Y A NN W+P E+ M D+
Sbjct: 11 KALFNENGDIETHKRKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQ 70
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
++ L+ E+ + L F +S+ N+ + ++++ E L QAF+EAV
Sbjct: 71 DYR---KLSGPEKTAYDKILSFLIFLDSIQTANLP-NVGQYVTANEVNLCLTIQAFQEAV 126
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ E R K + L + D
Sbjct: 127 HSQSYSYMLDTICSPEE------RTEILYQWKDDEHLLRRNKFIGDLYNEFQSDKSALAF 180
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ V + EG++FY+GF +LGR NKM G ++ +YI RDE+ HL +I +++
Sbjct: 181 LKVCVANYILEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSMIQELQ 240
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T + + R M+ E EIA+ + + GLN+ Y+Q++ N RC
Sbjct: 241 KEEPQLFTPQNVELFRGMIREGCEQEIAWGNYVIGNDIPGLNSQMITDYIQYLGNLRCEN 300
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G P++ + E P W+S+ + + +FFE + T Y + + + D
Sbjct: 301 LGFAPIYDGHKEEPQSMSWVSQYSNANLIKTDFFEAKSTAYAKSSAMVDD 350
>gi|258511567|ref|YP_003185001.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478293|gb|ACV58612.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 369
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 96/349 (27%), Positives = 165/349 (47%), Gaps = 13/349 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
+ + E + +R++ + ++ +L +KY WA++ Y + NN W+P E+P+ DD
Sbjct: 29 RTRLFNAEGDRDWGKRRIIGGNTTNMIELNNIKYEWAYKLYRAMMNNFWIPEEIPLADDA 88
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ + L+DDER + L F +SL+ +N+ I +++ PE L AF+EA
Sbjct: 89 RQY---DLLSDDERRSYNKVLSFLIFMDSLLTHNLP-NINEYITAPEVNLCLTVHAFQEA 144
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ S+ R+ + + L + F ++
Sbjct: 145 VHSQSYGYVLDSVVNP------ATRDQIYNEWRNDDHLLRRNQFITDLFEEFIENPTDRN 198
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY GF LGR KM+G + ++I RDE HL ++ ++I
Sbjct: 199 LMKTIVANYILEGVYFYAGFGFFFVLGRQGKMLGTVSEIKFIQRDELTHLAIFRNLYHEI 258
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
ENP + T + +++ M+ A EIA+ VGL + Y++++AN R
Sbjct: 259 IRENPGIVTPDMEEEFVEMMRTAVQHEIAWGQYVTQGKIVGLTDALIDAYIKYLANLRLQ 318
Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
+ L L+ E+P PWM + +FFE RVT Y + L WD
Sbjct: 319 SLNLPILYPEIKEHPMPWMDSFAAINSHKTDFFEQRVTNYTKAGNLNWD 367
>gi|304321610|ref|YP_003855253.1| ribonucleoside-diphosphate reductase subunit beta [Parvularcula
bermudensis HTCC2503]
gi|303300512|gb|ADM10111.1| ribonucleoside-diphosphate reductase, beta subunit [Parvularcula
bermudensis HTCC2503]
Length = 340
Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats.
Identities = 83/320 (25%), Positives = 145/320 (45%), Gaps = 18/320 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P +Y WA++ + HWMP EVP+ +D W N LTD ER ++ + FF S+
Sbjct: 18 YKPFRYPWAYDYWKKQQQVHWMPEEVPLGEDCKDWA--NKLTDKERNLLTQIFRFFTQSD 75
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + E R L + E +H + ++ ++G+ E E F+ + +
Sbjct: 76 VEVGANYMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPEVE-FSAFMDYE 134
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ AK ++ ++ + +++ L + VF EG+ + FA +++ R
Sbjct: 135 AMAAKHDYLGRF------------GVENERDILTSMAVFGGFTEGLQLFASFAMLMNFPR 182
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDESLH + + ++ E T LE
Sbjct: 183 FNKMKGMGQIVTWSIRDESLHCEGMVRLFHEFARET-GALTPAVADDIVDCCKTVVDLED 241
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ G G+ + Y++ IA+ R Q+GL P+F +P PW+ E+++ +
Sbjct: 242 KFIELAFEAGEVEGMTPDDIKAYIRHIADWRLSQLGLPPVFAADNHPLPWLREILNGVEH 301
Query: 333 KNFFETRVTEYQQGAE-LKW 351
NFFE R TEY +GA +W
Sbjct: 302 ANFFEARATEYSKGATRGEW 321
>gi|32266105|ref|NP_860137.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
hepaticus ATCC 51449]
gi|32262154|gb|AAP77203.1| ribonucleoside diphosphate reductase [Helicobacter hepaticus ATCC
51449]
Length = 349
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 94/349 (26%), Positives = 175/349 (50%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I E +V D+++ + L +KY WA+ + N W P EV M D
Sbjct: 11 SRKQIYNPESTESVADRKIFGGNPTSMFDLNKIKYQWAYNLWKVMLANTWFPEEVNMTPD 70
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ GLT E+L R L +SL NN++ + ++++PE L+RQA+EE
Sbjct: 71 KRDYN--GGLTAQEKLGYDRALAQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAYEE 128
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HS ++ ++ S+ + E++NM+R + +K + L+ K+ +++
Sbjct: 129 ALHSQSYAVMVESISANTDEIYNMWRVDMQLRSKNDNIANVYIELA--------KNPNEQ 180
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
L + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++I+
Sbjct: 181 NLLKAMFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLLLFQNMISS 240
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E HL+T +++ M +A +E + +GL + +Y+Q++A+ R
Sbjct: 241 LRKEQGHLFTPSLEEEVVEMFKKAVEIESQWGEYITQGQILGLTSEIIREYIQYLADARL 300
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
+GL L+ ++NP W+ + ++ NFFE +VT Y +G+ + +D
Sbjct: 301 KAVGLPQLYG-SKNPIKWVDQFASFNDQKTNFFEAKVTNYSKGS-INFD 347
>gi|42523460|ref|NP_968840.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
bacteriovorus HD100]
gi|39575666|emb|CAE79833.1| ribonucleotide-diphosphate reductase small chain [Bdellovibrio
bacteriovorus HD100]
Length = 336
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 104/334 (31%), Positives = 183/334 (54%), Gaps = 11/334 (3%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L+ D+ L P+KY +E Y + N W EV DL S +T+ E+ +I+
Sbjct: 6 ILDPGFDL-TLRPMKYPIFYEMYKNGIKNTWTVDEVDFSTDLVDLHS--KMTESEKHLIR 62
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
R + FFA+ +S+V NN+VL +Y+H+++PE R YL RQ +EEA+H + ++ + +
Sbjct: 63 RLVAFFATGDSIVGNNLVLNLYKHVNSPEGRMYLSRQLYEEALHVQFYLTLLDNYIPNPD 122
Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
E F +PSI KA++ ++ +++ + T + + FL +L F EG++
Sbjct: 123 ERAEAFAAVENIPSIKKKADFCYKWIDSINELT-ELNTIEDRRRFLMNLICFATCVEGLF 181
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY FA + L + G+A ++ RDES+H+ F I+V+ + E P L+ ++ +
Sbjct: 182 FYAAFAYVYFLRSKGLLAGLASGTNWVFRDESMHMAFAIEVVKTARKEEPELFNQQMEDM 241
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
ML +A E+ +AH+ + G GL+A QY+++ A++R + + P + +NPF
Sbjct: 242 VVQMLEDAIECEMEFAHDVLNLGVAGLSAKDMRQYLEYCADQRLESLNIAPRYNV-KNPF 300
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
+M E+ D+++ NFFE RV+ YQ G + +D
Sbjct: 301 IFM-ELQDMQELANFFERRVSAYQTGVSGAVAFD 333
>gi|187932511|ref|YP_001884520.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
botulinum B str. Eklund 17B]
gi|187720664|gb|ACD21885.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum B str. Eklund 17B]
Length = 344
Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats.
Identities = 99/348 (28%), Positives = 167/348 (47%), Gaps = 13/348 (3%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ + KR++N + ++N +KY WA + Y NN W+P E+ + DL
Sbjct: 6 KPLFNEFGDRDPRLKRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLK 65
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+K L DER + L F +S+ N+ I +++ E L Q+F+EAV
Sbjct: 66 DYK---KLLPDERTAYDKILSFLIFLDSIQTANLS-NINSYITASEINLCLTIQSFQEAV 121
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ S+ E R K + L + + ++ L
Sbjct: 122 HSQSYSYMLDSICSPEE------RNEILYQWKDDEILLKRNKFIGDLYNEFINNPNEYNL 175
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++
Sbjct: 176 IKTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQ 235
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
ENP +T + + + R M+H EI + H + G+N E Y++++ N+R +
Sbjct: 236 SENPESFTADLKNELREMMHIGVENEILWGHYVIGDKIQGINKKLIEDYIKYLGNKRLKE 295
Query: 307 IGLEPLF-KYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
IGLEPLF Y ENP W+ V + + +FFE + T Y + + L D
Sbjct: 296 IGLEPLFSGYEENPATWVDVVANSNSVKTDFFEAKSTAYAKVSTLIDD 343
>gi|83859670|ref|ZP_00953190.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis
alexandrii HTCC2633]
gi|83852029|gb|EAP89883.1| ribonucleotide-diphosphate reductase beta subunit [Oceanicaulis
alexandrii HTCC2633]
Length = 348
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 78/321 (24%), Positives = 143/321 (44%), Gaps = 18/321 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA++ + HW+P EVP+ +D W + LTD ER ++ + FF S
Sbjct: 17 TYKPFRYPWAYDFWKVQSQVHWLPEEVPLGEDCKDWAT--KLTDKERNLLTQIFRFFTQS 74
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V N + E R L + E +H + ++ ++G+ + E F+ + E
Sbjct: 75 DVEVGANYMENYMPLFKPVEVRMMLAAFSNMETIHIAAYALLLETIGMPDTE-FSAFMEY 133
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ AK ++ ++ + D++ L + VF EG+ + FA +++
Sbjct: 134 EEMAAKHDYLGKF------------GCETDRDILTSMAVFGGFTEGLQLFASFAMLMNFP 181
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R NKM G+ + + +RDESLH + + + E L + LE
Sbjct: 182 RFNKMKGMGQIVSWSVRDESLHCEGMMKLFHTFAEETGALTKG-VKDDIADCCKTVVSLE 240
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
+ G G+ + Y+++IA+ R Q+ L ++ E+P PW++E+++ +
Sbjct: 241 DKFIELAFEAGEVEGMTPEDIKNYIRYIADWRMKQLKLPTIYGVEEHPIPWLTEILNGVE 300
Query: 332 EKNFFETRVTEYQQ-GAELKW 351
NFFE R TEY + + W
Sbjct: 301 HANFFEARATEYSKGATQGDW 321
>gi|331086748|ref|ZP_08335825.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330409914|gb|EGG89349.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 347
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 87/350 (24%), Positives = 165/350 (47%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ V +R++ + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 7 KPLFNPAGDTEVRLRRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVR 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+++ L ER + L F +S+ N+ I +++ E L QAF+EAV
Sbjct: 67 DYRT---LPAPERRAYDKILSFLVFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ R K + L + ++ E
Sbjct: 123 HSQSYSYMLDTICEP------QERNKVLYQWKDDPHLLSRNEFIGNLYNEFQREKSLEAF 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +++ +++
Sbjct: 177 VRTMIANYILEGIYFYSGFMFFYNLGRNQKMTGSVQEIRYINRDENTHLWLFTNILRELR 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+++E +++ R M+ E EIA+ H + GL+ Y++++ N RC
Sbjct: 237 KELPELFSEEKEKEYRQMIREGCEQEIAWGHYVIGDAVSGLSCDMITDYVKYLGNLRCKN 296
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+GL P+++ + + P W+S+ + + +FFE + T Y + + L D
Sbjct: 297 LGLAPIYEGHEKEPESMGWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 346
>gi|212697417|ref|ZP_03305545.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM
7454]
gi|325846383|ref|ZP_08169352.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|212675609|gb|EEB35216.1| hypothetical protein ANHYDRO_01987 [Anaerococcus hydrogenalis DSM
7454]
gi|325481567|gb|EGC84607.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 352
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 92/356 (25%), Positives = 170/356 (47%), Gaps = 15/356 (4%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
I E +++ +R++N + ++N +KY W + Y A NN W+P E+
Sbjct: 6 KEEVSKRGIFNEEGDIDLSKRRIINGNTTNLNDFNNVKYTWTNDWYRQAMNNFWIPEEIN 65
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ D+ ++ L+ E+ R L F +S+ N+ + +++ E L Q
Sbjct: 66 LNQDIKDYR---NLSKAEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLAIQ 121
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
++EA+HS ++ YI+ ++ + R K + L + KD
Sbjct: 122 TYQEAIHSQSYSYILDTICSPDE------RTRILYLWKEDEHLLKRNKFIGDQYNEFIKD 175
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ L + + + EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL
Sbjct: 176 DSEFNLMRVLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRS 235
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+IN +K E P L+T E ++ ++L E EIA+ + GLN+ E Y++++
Sbjct: 236 MINDLKEERPDLFTDELKEFYLSLLKEGVEQEIAWGKYAIGDEIQGLNSQMIEDYIKYLG 295
Query: 301 NRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N R +GL +++ Y E P W+SE D + + +FFE +V+ Y + + ++ D
Sbjct: 296 NLRAKGLGLGKIYEGYEEEPQSMKWVSEYSDPNQVKTDFFEGKVSAYSKSSVIEDD 351
>gi|325663145|ref|ZP_08151595.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
bacterium 4_1_37FAA]
gi|325470599|gb|EGC73829.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
bacterium 4_1_37FAA]
Length = 347
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 87/350 (24%), Positives = 165/350 (47%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ V +R++ + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 7 KPLFNPAGDTEVRLRRIVGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEINLGADVR 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+++ L ER + L F +S+ N+ I +++ E L QAF+EAV
Sbjct: 67 DYRT---LPAPERRAYDKILSFLVFLDSIQTANLP-NISEYITANEVNLCLSIQAFQEAV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ R K + L + ++ E
Sbjct: 123 HSQSYSYMLDTICEP------QERNEVLYQWKDDPHLLSRNEFIGNLYNEFQREKSLEAF 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +++ +++
Sbjct: 177 VRTMIANYILEGIYFYSGFMFFYNLGRNQKMTGSVQEIRYINRDENTHLWLFTNILRELR 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+++E +++ R M+ E EIA+ H + GL+ Y++++ N RC
Sbjct: 237 KELPELFSEEKEKEYRQMIREGCEQEIAWGHYVIGDAVSGLSCDMITDYVKYLGNLRCKN 296
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+GL P+++ + + P W+S+ + + +FFE + T Y + + L D
Sbjct: 297 LGLAPIYEGHEKEPESMGWVSQFSNANMIKTDFFEAKSTAYAKSSALVDD 346
>gi|15639047|ref|NP_218493.1| ribonucleotide-diphosphate reductase subunit beta [Treponema
pallidum subsp. pallidum str. Nichols]
gi|189025287|ref|YP_001933059.1| ribonucleotide-diphosphate reductase subunit beta [Treponema
pallidum subsp. pallidum SS14]
gi|6093976|sp|O83092|RIR2_TREPA RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|3322311|gb|AAC65049.1| ribonucleoside-diphosphate reductase, subunit beta (nrdB)
[Treponema pallidum subsp. pallidum str. Nichols]
gi|189017862|gb|ACD70480.1| ribonucleoside-diphosphate reductase, subunit beta [Treponema
pallidum subsp. pallidum SS14]
gi|291059468|gb|ADD72203.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
pallidum subsp. pallidum str. Chicago]
Length = 351
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
+ + + +RM+ + ++N +KY W + Y A NN W+P E+ M D+
Sbjct: 10 RRALFNEAGDIELHKRRMVGGNTTNLNDFNNMKYPWVSKWYRQAMNNFWIPEEINMSSDV 69
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ L+ E+ + L F +S+ N+ I ++++ E L QAF+EA
Sbjct: 70 QDYR---NLSAIEKTAYDKILSFLIFLDSIQTANLP-NIGQYITANEINLCLTIQAFQEA 125
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ ++ E R K + L + D
Sbjct: 126 VHSQSYSYMLDTICSPEE------RNDILYQWKDDEHLLARNKFIGNLYNEFQDDKSVLA 179
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L + + V EG++FY+GF +LGR NKM G ++ +YI RDE+ HL +I ++
Sbjct: 180 LLKVAIANYVLEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSIIQEL 239
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P ++T + R M+ E EI + + GLN Y++++ N RC
Sbjct: 240 QKEEPQVFTARNVRLFRDMIREGCEQEIKWGDYVIGDQIPGLNRHMVADYIRYLGNLRCE 299
Query: 306 QIGLEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G EPL++ W+S+ + + +FFE + T Y + + + D
Sbjct: 300 NLGFEPLYEGHRVEPESMSWVSQYSNANLIKTDFFEAKSTAYAKSSAMVDD 350
>gi|73666936|ref|YP_302952.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia canis
str. Jake]
gi|72394077|gb|AAZ68354.1| Ribonucleoside-diphosphate reductase [Ehrlichia canis str. Jake]
Length = 324
Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats.
Identities = 84/321 (26%), Positives = 152/321 (47%), Gaps = 14/321 (4%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF ++
Sbjct: 10 YKPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + E L + E +H + Y++ ++G+ E E + + +
Sbjct: 68 IEVNNCYMRHYSNIFKPTEVCMMLAAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K ++ ++ + K+ + + L VF EG+ + FA +L+ R
Sbjct: 127 VMKKKYDYMQKFEE---------CRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
KM G+ + + +RDE+LH I + N EN +W + + LE
Sbjct: 178 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFVQENYEIWDDSLKHELYEACKIIVSLED 237
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ + G GL+A ++Y+++IANRR Q+ LEP++ +NP W+ E+++ +
Sbjct: 238 EFINLAFACGDVEGLSAKEVKKYIRYIANRRLLQLNLEPIYDANKNPLLWLDEILNGVEH 297
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE RVTEY + E W+
Sbjct: 298 TNFFENRVTEYARAATEGTWE 318
>gi|298207002|ref|YP_003715181.1| probable ribonucleoside-diphosphate reductase small chain
[Croceibacter atlanticus HTCC2559]
gi|83849636|gb|EAP87504.1| probable ribonucleoside-diphosphate reductase small chain
[Croceibacter atlanticus HTCC2559]
Length = 325
Score = 232 bits (591), Expect = 8e-59, Method: Composition-based stats.
Identities = 91/334 (27%), Positives = 156/334 (46%), Gaps = 28/334 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + + P+++ WE Y W E+ + DL W S L DDER
Sbjct: 5 EPILQKNENRFVIFPIQHNDIWEWYKKMEACFWTAEEIDLHQDLTDWNS--KLNDDERYF 62
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYSEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E LF P+I KA+WAL++ ++ S + + + EG
Sbjct: 123 EAEKDQLFRAIEVFPAIKKKADWALKWIESDS---------------FAERLIAFAAVEG 167
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F F I L + M G+ + I RDE +H +F + + N HL K +
Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGMHCDFAVHLH------NKHLVNKVSK 221
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ R ++ +A +E + E++P +G+N+ QY++F+ +R ++ E + T N
Sbjct: 222 ERIREIIVDALNIEREFITESLPASLIGMNSNLMTQYLEFVTDRLLLELECEKEYN-TAN 280
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
PF +M +I L+ + NFFE RV +YQ+ + D
Sbjct: 281 PFDFMD-MISLQGKTNFFEKRVGDYQKAGVMDQD 313
>gi|329847182|ref|ZP_08262210.1| ribonucleotide reductase, small chain family protein [Asticcacaulis
biprosthecum C19]
gi|328842245|gb|EGF91814.1| ribonucleotide reductase, small chain family protein [Asticcacaulis
biprosthecum C19]
Length = 352
Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats.
Identities = 82/321 (25%), Positives = 141/321 (43%), Gaps = 19/321 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P +Y WA+E + HW+P EVP+ +D W S L+D ER ++ + FF S+
Sbjct: 21 YKPFRYPWAFEYWRKQQQVHWIPEEVPLGEDCKDWAS--KLSDSERNLLTQIFRFFTQSD 78
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V +N + R E + L A E +H + ++ ++G+ E E F + +
Sbjct: 79 IEVQDNYLERYGRVFKPTEIKMMLSAFANMETIHIAAYALLLETIGMPESE-FGAFMDYE 137
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ K ++ T D + + L+ L +F EG+ + FA +++ R
Sbjct: 138 AMRDKHDFMG------------TFGVDTEADVLRTLAMFGGFTEGLQLFASFAMLMNFPR 185
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDESLH I + + E TK Q +E
Sbjct: 186 FNKMKGMGQIVSWSVRDESLHCEGIIKLYHAFAKETKA-LTKSVQDDIIDCCKTVVTMED 244
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK 331
+ G G+ + Y+++IA+ R Q+ L ++ ENP PW+ ++ +
Sbjct: 245 KFIDLAFEMGPVQGMTPDDIKAYIRYIADWRLRQLNLPEVYGGVKENPLPWLQVLLSGVE 304
Query: 332 EKNFFETRVTEYQQ-GAELKW 351
NFFE R TEY + +W
Sbjct: 305 HANFFEARATEYSKAATTGQW 325
>gi|73974200|ref|XP_858061.1| PREDICTED: similar to ribonucleotide reductase M2 B (TP53
inducible) isoform 3 [Canis familiaris]
Length = 338
Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 152/339 (44%), Gaps = 41/339 (12%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E V D++ +L S + P++Y W+ Y A + W EV + DL W N
Sbjct: 24 ENEVKSDEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHW---NK 80
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L DE+ I L FFA+S+ +V N+V + + PE R + Q E VHS +
Sbjct: 81 LKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSL 140
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
+I + D + LFN +P + KA+WAL++ + + +
Sbjct: 141 LIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIE-------------DRKSTFGERV 187
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 188 VAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVN--- 244
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
K +++ R ++ A +E + E +P G +G+N +QY++F+
Sbjct: 245 ----KPSEERVREIIVNAVEIEQEFLTEALPVGLIGMNCVLMKQYIEFVF---------- 290
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
ENPF +M E I L+ + NFFE RV EYQ+ A +
Sbjct: 291 ----QAENPFDFM-ENISLEGKTNFFEKRVAEYQRFAVM 324
>gi|302386033|ref|YP_003821855.1| ribonucleotide reductase [Clostridium saccharolyticum WM1]
gi|302196661|gb|ADL04232.1| ribonucleotide reductase [Clostridium saccharolyticum WM1]
Length = 368
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 162/349 (46%), Gaps = 15/349 (4%)
Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
P+ + V +RM+N + ++N +KY W + Y A NN W+P E+ + D
Sbjct: 29 PLFHPDGETEVRKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLSRDRKD 88
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
+ L+ ER + L F +S+ N+ A+ +++ E L Q F+EAVH
Sbjct: 89 Y---PLLSPQERRAYDKILSFLVFLDSIQTANLP-ALGEYVTANEINLCLSIQTFQEAVH 144
Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
S ++ Y++ ++ R K++ L T + KD
Sbjct: 145 SQSYSYMLDTICEP------QTRNDVLYQWKSDPRLLARNTFIGDLYNEFQKDKSPYAFM 198
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
V + EG++FY+GF +LGR +KM G +++ +YI RDE+ HL ++I +++
Sbjct: 199 KTVVANFILEGVYFYSGFMFFYNLGRNHKMTGSSQEIRYINRDENTHLWLFRNIILELEK 258
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
E P L+++E + RTM+ E EIA+ + GL Y+ ++ N RC +
Sbjct: 259 EEPKLFSRERIEVYRTMIKEGCEQEIAWGCYAIGDEVPGLTKEMITDYIMYLGNLRCASL 318
Query: 308 GLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
G +++ + + P W+++ + + +FFE + T Y + + L D
Sbjct: 319 GWGRIYEGHDKEPESMSWVNQFSNANLIKTDFFEAKSTAYAKSSALLDD 367
>gi|311898297|dbj|BAJ30705.1| putative ribonucleoside-diphosphate reductase subunit beta
[Kitasatospora setae KM-6054]
Length = 339
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 104/338 (30%), Positives = 184/338 (54%), Gaps = 12/338 (3%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
K +L+ ++ L P++Y +++Y A N W EV + D+A L++ ER
Sbjct: 6 RKKMLLDPGFEL-TLRPMRYPSFYDRYRDAIKNTWTVEEVDLHSDVAD---LAKLSEGER 61
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
MI R + FFA+ +S+V+NN+VL++Y+H+++PE R YL RQ FEEAVH + ++ +
Sbjct: 62 HMIGRLVAFFATGDSIVSNNVVLSLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYL 121
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D + F +PSI KA + +Y + + +K+ + FL +L F
Sbjct: 122 PDPEDRNAAFAAVENIPSIAQKAQFCFKYMNAVDHID-SLRSKEDRRAFLLNLICFAACV 180
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++FY FA + + G+A ++ RDES+H++F V++ ++ E P L+ +
Sbjct: 181 EGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDESMHMDFAFSVVDTVREEEPDLFDDK 240
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ ML EA E+ +A + +G G+N S +Y+Q +A++R ++GL + +
Sbjct: 241 MARQVTEMLEEAVEAELQFARDLCGEGLPGMNTESMREYLQAVADQRLARLGLPIRYG-S 299
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
NPF +M E+ ++++ NFFE RV+ YQ + +D
Sbjct: 300 TNPFGFM-ELQNVQELTNFFERRVSAYQIAVEGSVSFD 336
>gi|256545921|ref|ZP_05473276.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
vaginalis ATCC 51170]
gi|256398343|gb|EEU11965.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
vaginalis ATCC 51170]
Length = 352
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 91/356 (25%), Positives = 170/356 (47%), Gaps = 15/356 (4%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
I E +++ +R++N + ++N +KY W + Y A NN W+P E+
Sbjct: 6 KEEVSKRGIFNEEGDIDLSKRRIINGNTTNLNDFNNVKYTWTSDWYRQAMNNFWIPEEIN 65
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ D+ ++ L+ E+ R L F +S+ N+ + +++ E L Q
Sbjct: 66 LNQDIKDYR---NLSKAEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLAIQ 121
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
++EA+HS ++ YI+ ++ + R K + L + KD
Sbjct: 122 TYQEAIHSQSYSYILDTICSPDE------RTRILYLWKEDDHLLKRNKFIGDQYNEFIKD 175
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ L + + + EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL
Sbjct: 176 DSEFNLMRVLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRS 235
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+IN +K E P L+T E ++ ++L E EIA+ + GLN+ E Y++++
Sbjct: 236 MINDLKEERPDLFTDELKEFYLSLLKEGVEQEIAWGKYAIGDEIQGLNSQMIEDYIKYLG 295
Query: 301 NRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N R +GL +++ Y + P W+SE D + + +FFE +V+ Y + + ++ D
Sbjct: 296 NLRAKGLGLGTIYEGYEDEPQSMKWVSEYSDPNQVKTDFFEGKVSAYSKSSVIEDD 351
>gi|218289144|ref|ZP_03493380.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
acidocaldarius LAA1]
gi|218240727|gb|EED07906.1| Ribonucleoside-diphosphate reductase [Alicyclobacillus
acidocaldarius LAA1]
Length = 345
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 96/349 (27%), Positives = 165/349 (47%), Gaps = 13/349 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
+ + E + +R++ + ++ +L +KY WA++ Y + NN W+P E+P+ DD
Sbjct: 5 RTRLFNAEGDRDWGKRRIIGGNTTNMIELNNIKYEWAYKLYRAMMNNFWIPEEIPLADDA 64
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ + L+DDER + L F +SL+ +N+ I +++ PE L AF+EA
Sbjct: 65 RQY---DLLSDDERRSYNKVLSFLIFMDSLLTHNLP-NINEYITAPEVNLCLTVHAFQEA 120
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ S+ R+ + + L + F ++
Sbjct: 121 VHSQSYGYVLDSVVNP------ATRDQIYNEWRNDDHLLRRNQFITDLFEEFIENPTDRN 174
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY GF LGR KM+G + ++I RDE HL ++ ++I
Sbjct: 175 LMKTIVANYILEGVYFYAGFGFFFVLGRQGKMLGTVSEIKFIQRDELTHLAIFRNLYHEI 234
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
ENP + T + +++ M+ A EIA+ VGL + Y++++AN R
Sbjct: 235 VRENPGIVTPDMEEEFVEMMRTAVQHEIAWGQYVTQGKIVGLTDALIDAYIKYLANLRLQ 294
Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
+ L L+ E+P PWM + +FFE RVT Y + L WD
Sbjct: 295 SLNLPILYPEIKEHPMPWMDSFAAINSHKTDFFEQRVTNYTKAGNLNWD 343
>gi|254517517|ref|ZP_05129573.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp.
7_2_43FAA]
gi|226911266|gb|EEH96467.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium sp.
7_2_43FAA]
Length = 344
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 13/348 (3%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ KRM+N + ++N +KY W + Y A NN W+P E+ + DL
Sbjct: 6 KPLFNEFGDTETSKKRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLAQDLK 65
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ N LT+DER + L F +S+ N+ I +++ E L QAF+EAV
Sbjct: 66 DY---NKLTNDERTAYDKILSFLIFLDSIQTANLS-NINNYITASEVNLCLTIQAFQEAV 121
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ E R K + L + + QE L
Sbjct: 122 HSQSYSYMLDTICSPEK------RNEILYQWKDDKILLERNKFIGELYNNFLEAPTQENL 175
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + EG++FY+GF +L R KM G A++ +YI RDE+ HL +++ +++
Sbjct: 176 IKTIMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNILKELQ 235
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+E P ++T E + + + M+ A EI++ + + G+N Y++++ N R
Sbjct: 236 LEQPEIFTDEVKNQLKEMMKTAVEHEISWGNYVIGDNIQGINKNLINDYIKYLGNLRMKA 295
Query: 307 IGLEPLFK-YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
IGL+ +++ + NP W+ + D + +FFE + T Y + L D
Sbjct: 296 IGLDAIYEGHDNNPAAWVDILSDANSVKTDFFEAKSTAYAKAGALIDD 343
>gi|11544904|emb|CAC17630.1| class I ribonucleotide-diphosphate reductase small subunit chain
[Streptomyces jumonjinensis]
Length = 322
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 99/311 (31%), Positives = 167/311 (53%), Gaps = 9/311 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y +E+Y A N W EV + D+ LT E+ +I R + FFA+
Sbjct: 18 TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVTD---LAKLTPGEQHLIGRLVAFFATG 74
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ + D + F
Sbjct: 75 DSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDTYLPDPEDRTAAFAAV 134
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+PSI KA + ++ ++ T+ + FL +L F EG++FY FA +
Sbjct: 135 ENIPSIREKAQFCFKWMDSVEKID-QLETQADRRRFLLNLICFAACIEGLFFYGAFAYVY 193
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDE++H+NF +V++ ++ E P L+ QQ+ ML EA
Sbjct: 194 WFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFDDALQQQVTDMLQEAV 253
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ + + G G+N S +Y+Q +A++R ++G P++ +ENPF +M E+ +
Sbjct: 254 EAELQFGSDLCGDGLPGMNTESMREYLQCVADQRLTRLGFAPVYG-SENPFSFM-ELQGV 311
Query: 330 KKEKNFFETRV 340
++ NFFE R
Sbjct: 312 QELTNFFERRP 322
>gi|150015087|ref|YP_001307341.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
beijerinckii NCIMB 8052]
gi|149901552|gb|ABR32385.1| Ribonucleoside-diphosphate reductase [Clostridium beijerinckii
NCIMB 8052]
Length = 344
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 95/348 (27%), Positives = 166/348 (47%), Gaps = 13/348 (3%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ + KR++N + ++N +KY W + Y NN W+P EV + DL
Sbjct: 6 KPLFNELGDREISKKRIINGNTTNLNDFNNMKYSWVSDWYRQGMNNFWIPEEVNLSQDLK 65
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
++ L ++ER+ + L F +S+ N+ I +++ E L Q+F+EAV
Sbjct: 66 DYQ---NLLEEERIAYDKILSFLIFLDSIQTANLS-NINNYITASEINLCLTIQSFQEAV 121
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ S+ E R K + L + ++ + L
Sbjct: 122 HSQSYSYMLDSICSPEK------RNEILYQWKDDDILLKRNKFIGDLYNEFIENPTEYNL 175
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++
Sbjct: 176 LRTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQ 235
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
ENP L+T+E + + R M+ EI + H + G+N E Y++++ N+R +
Sbjct: 236 NENPELFTEEVKNELRNMMKIGVEQEILWGHYVIGDKIQGINKQLIENYIKYLGNKRLKE 295
Query: 307 IGLEPLFKY-TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
I L PLFK +NP W+ + + + +FFE R T Y + L D
Sbjct: 296 INLSPLFKEQDKNPASWVDTLSNANSVKTDFFEARSTAYAKVTTLIDD 343
>gi|161760549|ref|NP_906664.2| ribonucleotide-diphosphate reductase subunit beta [Wolinella
succinogenes DSM 1740]
Length = 341
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 93/348 (26%), Positives = 173/348 (49%), Gaps = 14/348 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I + V+++++ + +L +KY WA+ + N W P EV M D
Sbjct: 4 RKKIYNPQSTETVNERKIFGGNPTSIFELNKIKYQWAYNLWKVMLANSWFPEEVNMTPDK 63
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ GLT E+L R L +SL NN++ + ++++PE L+RQAFEEA
Sbjct: 64 RDYN--GGLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQAFEEA 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+HS ++ ++ S+ + E++ M+R + +K + + L+ K+
Sbjct: 122 LHSQSYAVMVESISANTDEIYEMWRVDMQLKSKNDHIAGVYEELA--------KNPTDSA 173
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ + EG++FY GF+ +L R+ KM+G A+ ++I RDE HL ++IN +
Sbjct: 174 MLKAMFANQILEGIYFYAGFSFFYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINAL 233
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E P L+TK +++ M +A +E A+ +GL + +Y+Q++A+ R
Sbjct: 234 KKERPDLFTKSLEEEVVEMFRKAVAVESAWGDYITQGQILGLTSEIIHEYIQYLADDRLK 293
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
++G+ L+ ++P W+ + + + NFFE VT Y +G+ + +D
Sbjct: 294 RVGMPILYN-AKHPIKWVDQFSSFNEQKTNFFEGNVTNYAKGS-INFD 339
>gi|167648664|ref|YP_001686327.1| ribonucleotide-diphosphate reductase subunit beta [Caulobacter sp.
K31]
gi|167351094|gb|ABZ73829.1| Ribonucleoside-diphosphate reductase [Caulobacter sp. K31]
Length = 346
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 83/320 (25%), Positives = 142/320 (44%), Gaps = 18/320 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P +Y WA E + HWMP EVP+ +DL W L D ER ++ + FF S+
Sbjct: 18 YKPFRYPWAHEFWKKQQQVHWMPEEVPLGEDLKDWA--VKLNDKERNLLTQIFRFFTQSD 75
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
VA+N + R E + L A E +H + ++ ++G+ E E F + +
Sbjct: 76 IEVADNYMERYGRVFKPTEVKMMLSSFANMETIHIAAYALLLETIGMPESE-FGAFMQYQ 134
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
++ K ++ ++ + + + + L +F EG+ + FA +++ R
Sbjct: 135 AMRDKHDFMQKF------------GVETNADIARTLAMFGGFTEGLQLFASFAMLMNFPR 182
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
NKM G+ + + +RDESLH I + + E T E ++E
Sbjct: 183 FNKMKGMGQIVSWSIRDESLHCEGIIKLYHAFNAETK-CVTPEVAADIVECCKSVVIMED 241
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
A+ G G+ +QY++FIA+ R Q+ L ++ ENP PW+ ++ +
Sbjct: 242 AFIDLAFEAGEIQGMTPHDIKQYIRFIADWRLRQLHLPEVYGIKENPLPWLQSLLSGVEH 301
Query: 333 KNFFETRVTEYQQ-GAELKW 351
NFFE R TEY + +W
Sbjct: 302 ANFFEARATEYSKAATTGQW 321
>gi|103487260|ref|YP_616821.1| ribonucleotide-diphosphate reductase subunit beta [Sphingopyxis
alaskensis RB2256]
gi|98977337|gb|ABF53488.1| Ribonucleoside-diphosphate reductase [Sphingopyxis alaskensis
RB2256]
Length = 354
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 82/323 (25%), Positives = 152/323 (47%), Gaps = 18/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y WA++ + HW+P EVP+ +D W ++D ER ++ + FF
Sbjct: 7 RKTYKPFEYPWAFDFWKRQQQIHWVPEEVPLGEDCRDWAQ--KISDHERNLLTQIFRFFT 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
++ V + R E + L + E VH + +++ ++G+ E E + M+
Sbjct: 65 QADIEVQDCYHEKYGRVFKPTEIKMMLTAFSNMETVHIAAYSHLLDTIGMPESE-YGMFL 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + AK ++ Q+ + D++ + L +F EG+ + FA +++
Sbjct: 124 EYDEMRAKHDYMQQF------------GVETDEDIARTLAMFGGFTEGLQLFASFAMLMN 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
R NKM G+ + + +RDESLH I + + E TK ++ +
Sbjct: 172 FPRFNKMKGMGQIVSWSIRDESLHCEGIIKLFHAFTKER-GCLTKAVKEDIIDTCQKTVR 230
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
LE A+ +G G+ ++Y+++IA+ R Q+G +P++ E+P PW++ +++
Sbjct: 231 LEDAFIDLAFEQGPVPGMTPKEIKRYIRYIADWRLGQLGFQPIYMIDEHPLPWLAPLLNG 290
Query: 330 KKEKNFFETRVTEYQQGAE-LKW 351
+ NFFETR TEY +GA W
Sbjct: 291 VEHANFFETRATEYSKGATRGDW 313
>gi|269865926|ref|XP_002652096.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063168|gb|EED41960.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 330
Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 90/328 (27%), Positives = 148/328 (45%), Gaps = 31/328 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ + P++Y WE Y + W EV M D + + LT +E+
Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEVYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D
Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LFN +PSI KA WA ++ + +S V + EG
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD--------------TRCVAFACVEG 188
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + I +
Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNK---------C 239
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ EA +E + E++P +G+N QY++F+A+R +G + ++ + N
Sbjct: 240 TVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-N 298
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
PF +M E I L+ + NFFE R YQ+G
Sbjct: 299 PFDFM-ENISLQGKTNFFERREANYQKG 325
>gi|224007863|ref|XP_002292891.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971753|gb|EED90087.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 297
Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 86/313 (27%), Positives = 143/313 (45%), Gaps = 30/313 (9%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y A + W E+ + +DL W + LT +ER + L FFA+S+ +V N+
Sbjct: 1 MYKKAEASFWTAEEIDLAEDLKDW---DALTANERHFVSHILAFFAASDGIVNENLTGNF 57
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
+++PE R + Q E +HS T+ +I + D E L N VP + KA+W
Sbjct: 58 STEVTSPEARCFYGFQIAVENIHSETYSLLIDTYIKDSTEKNHLLNAIETVPCVQKKAHW 117
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
AL++ + F + + F V EG++F F I L + M G+
Sbjct: 118 ALKWCDA------------GNASFAERMIAFAAV-EGIFFSGSFCAIFWLKKRGLMPGLC 164
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ I RDE LH +F + +++ + P + + ++ A +E + + +P
Sbjct: 165 FSNELISRDEGLHCDFACLLYSKLVNKLP-------ESRITKIITVAVEIEKEFVSDALP 217
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
+G+N+ Y++F A+R +G + T NPF WM E+I L+ + NFFE RV
Sbjct: 218 VELIGMNSKLMCDYIEFCADRLLGALGCSKFYNAT-NPFEWM-EMISLQGKTNFFEKRVG 275
Query: 342 EYQQGAEL--KWD 352
EY + K D
Sbjct: 276 EYAKSGVGVNKDD 288
>gi|88658048|ref|YP_507564.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
chaffeensis str. Arkansas]
gi|88599505|gb|ABD44974.1| ribonucleoside-diphosphate reductase, beta subunit [Ehrlichia
chaffeensis str. Arkansas]
Length = 324
Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 84/321 (26%), Positives = 153/321 (47%), Gaps = 14/321 (4%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA++ +L HW+P EVP+ DD+ WK+ L++ E+ ++ + FF ++
Sbjct: 10 YKPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + E L + E +H + Y++ ++G+ E E + + +
Sbjct: 68 IEVNNCYMKHYSNIFKPTEVCMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K ++ ++ + K+ + + L VF EG+ + FA +L+ R
Sbjct: 127 VMKKKYDYMQRFEE---------CRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
KM G+ + + +RDE+LH I + N EN +W +Q+ LE
Sbjct: 178 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDSLKQELYEACRIIVSLED 237
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ + G GL++ ++Y+++IANRR Q+ LEP++ +NP W+ E+++ +
Sbjct: 238 EFINLAFACGDVEGLSSKEVKEYIRYIANRRLLQLNLEPIYDTNKNPLLWLDEILNGVEH 297
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE RVTEY + E W+
Sbjct: 298 TNFFENRVTEYARAATEGTWE 318
>gi|19074323|ref|NP_585829.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon
cuniculi GB-M1]
gi|51701822|sp|Q8SRR2|RIR2_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|19068965|emb|CAD25433.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE SMALL CHAIN [Encephalitozoon
cuniculi GB-M1]
Length = 325
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 90/330 (27%), Positives = 156/330 (47%), Gaps = 30/330 (9%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ + +L+ + + LLP+KY W+ Y A ++ W EV + D+ W L ER
Sbjct: 6 ETELLLDPKEERFVLLPIKYHDIWKMYKKAESSFWTVEEVSLDKDIDDW---GKLNAKER 62
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I L FFA+S+ +V N+V + E R + Q E +HS + +I +
Sbjct: 63 HFISYVLAFFAASDGIVNLNLVERFSTEVKVLEARFFYGFQMAIENIHSEMYSLLIDTYI 122
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LF+ R +PS+ KA+WA+++ + D + +F L +
Sbjct: 123 RDNDEKNFLFDAIRTIPSVKEKADWAIRWIE------------DKNSDFATRLVA-FACV 169
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F FA I L + M G+ + I RDE LH F + +K +
Sbjct: 170 EGIFFSGAFASIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLHYHLKKK-------- 221
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ + ++ +A +E + E++P +G+N +Y++F+A+R +G E ++ T
Sbjct: 222 -CNRIKEVVMDAVEIEKKFLSESLPVNLIGMNCNLMCRYIEFVADRLLENLGEERVYNAT 280
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
NPF +M E I L + NFF+ R ++YQ+
Sbjct: 281 -NPFDFM-ENISLVGKTNFFDKRESQYQKA 308
>gi|66475262|ref|XP_627447.1| ribonucleotide reductase small subunit, duplicated adjacent gene
[Cryptosporidium parvum Iowa II]
gi|9652154|gb|AAF91416.1|AF275635_1 ribonucleotide reductase R2 subunit [Cryptosporidium parvum]
gi|46228920|gb|EAK89769.1| ribonucleotide reductase small subunit, duplicated adjacent gene
[Cryptosporidium parvum Iowa II]
Length = 352
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 92/352 (26%), Positives = 159/352 (45%), Gaps = 32/352 (9%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ + + E ++N ++ ML +R + N+L L W Y A + W+ E+
Sbjct: 15 KDEENIEKLVN-EVKINQVNEPMLKYSRENRNELKELI-KDIWSMYKKAEASFWVTEEID 72
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ D W+S L D ER IK L FFA+S+ +V N+ + R + PE R Y Q
Sbjct: 73 LSQDTRDWES---LKDPERHFIKYVLAFFAASDGIVMENLAVNFLREIQIPEARMYYAFQ 129
Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
E +HS T+ +I + E LF + ++ KA WA ++ + S
Sbjct: 130 MSIEQIHSETYSLLIDRYITEIKERQMLFEAISHIEAVKKKAEWATKWMNSERS------ 183
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
+ + + EG+ F F I L + M G+ + I RDE LH +F
Sbjct: 184 --------FAERIIGFCAVEGILFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHADF 235
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ +K + P + + ++ EA +E + +++P +G+N+ QY++
Sbjct: 236 ACLIYKALKFKLPAP-------RVQQIISEAVEVERNFLCDSLPVDLIGMNSRLMAQYIE 288
Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
F+A+R + + ++ + NPF WM +I L+ + NFFE RV EYQ +
Sbjct: 289 FVADRLLFALDIPKIYNVS-NPFDWMD-LISLQGKTNFFEKRVGEYQMAGVM 338
>gi|330814259|ref|YP_004358498.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
[Candidatus Pelagibacter sp. IMCC9063]
gi|327487354|gb|AEA81759.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
[Candidatus Pelagibacter sp. IMCC9063]
Length = 345
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 81/334 (24%), Positives = 153/334 (45%), Gaps = 20/334 (5%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+++ +L + P +Y W ++ +L+ HW+P EVP+ +D+ W+ L E+
Sbjct: 22 EEEGLLKEK---IVYKPFRYPWCYDAWLTQQRIHWLPEEVPLAEDVRDWQK--KLLPHEK 76
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
++ + FF ++ V N + E + A E VH + +++ ++G
Sbjct: 77 NLLTQIFRFFTQADVEVNNCYLRHYTTVFKPTEVLMMMTAFASMETVHVAAYSHLLDTIG 136
Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
+ E E ++ + + + K ++ + +E + + VF EG+
Sbjct: 137 MPETE-YSAFLKYKEMKDKYDYMQNFNMG------------DKREIAKTVAVFSAFTEGL 183
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
+ FA +L+ R NKM G+ + + +RDE+LH N I + N ENP L ++
Sbjct: 184 QLFASFAILLNFPRFNKMKGMGQIVTWSVRDETLHCNSMIKIFNTFCDENPGLLDDSLKK 243
Query: 260 KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ E A+ G GL A ++Y+++IANRR Q+ L L++ EN
Sbjct: 244 EIYEACSTIIEHEDAFIDLAFEMGDIEGLKAEEVKKYIRWIANRRLAQLRLNDLYEVKEN 303
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKW 351
P W+ ++++ + NFFE R TEY + + + W
Sbjct: 304 PLTWLDDMLNGVEHMNFFEGRATEYSKASTKGSW 337
>gi|154505112|ref|ZP_02041850.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149]
gi|153794591|gb|EDN77011.1| hypothetical protein RUMGNA_02625 [Ruminococcus gnavus ATCC 29149]
Length = 347
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ ++ +RM+ + ++N L+Y W Y A NN W+P E+ + D+
Sbjct: 7 KPLFNPGGDTDIRLRRMIGGNTTNLNDFNNLRYTWVNNWYRQAMNNFWIPEEINLSQDIK 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ LT++ER + L F +S+ N+ I +++ E L Q F+E V
Sbjct: 67 DY---PNLTENERTAYNKILSFLVFLDSIQTANLP-CIGEYITANEINLCLSIQTFQECV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ S+ + R K + L T + + D L
Sbjct: 123 HSQSYSYMLDSICSP------VERNDILYQWKNDAHLLRRNTFIGDLYNEFQEKKDDFTL 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K
Sbjct: 177 LKVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILEMK 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T E + + ML E EIA+ H + GL +Y+Q++ N R
Sbjct: 237 KELPELFTPEHIEILKEMLKEGVRQEIAWGHYVIGNQIAGLTKEMITEYIQYLGNLRFTN 296
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G +P++ T+ P W+S+ + + +FFE + T Y + L D
Sbjct: 297 LGFDPIYPDQTQEPDSMRWVSQYSNANMVKTDFFEAKSTAYAKSTALIDD 346
>gi|269863618|ref|XP_002651286.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220064807|gb|EED42770.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 332
Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 90/328 (27%), Positives = 148/328 (45%), Gaps = 31/328 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ + P++Y WE Y + W EV M D + + LT +E+
Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D
Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LFN +PSI KA WA ++ + +S V + EG
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD--------------TRCVAFACVEG 188
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + I +
Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNK---------C 239
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ EA +E + E++P +G+N QY++F+A+R +G + ++ + N
Sbjct: 240 TVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-N 298
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
PF +M E I L+ + NFFE R YQ+G
Sbjct: 299 PFDFM-ENISLQGKTNFFERREANYQKG 325
>gi|10344|emb|CAA26307.1| unnamed protein product [Spisula solidissima]
Length = 300
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 86/309 (27%), Positives = 142/309 (45%), Gaps = 28/309 (9%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y A + W EV + D+A W+S L +E+ I L FFA+S+ +V N+V
Sbjct: 1 MYKKAEASFWTAEEVDLSKDMAHWES---LKKEEKHFISHVLAFFAASDGIVNENLVERF 57
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
+ + E R + Q E +HS + +I + D E LFN +P + KA+W
Sbjct: 58 SKEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADW 117
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
A+++ D + V + EG++F FA I L + M G+
Sbjct: 118 AMRWIN-------------DDSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLT 164
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ I RDE LH +F + + + K Q++ ++ EA +E + E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFSHLVN-------KPSQERIHQIIDEAVKIEQVFLTEALP 217
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
+G+N QY++F+A+R ++ + L+ ENPF +M I L+ + NFFE RV
Sbjct: 218 CRLIGMNCDLMRQYIEFVADRLLLELKCDKLYN-KENPFDFMEH-ISLEGKTNFFEKRVG 275
Query: 342 EYQQGAELK 350
EYQ+ +
Sbjct: 276 EYQKMGVMS 284
>gi|289449785|ref|YP_003474451.1| ribonucleoside-diphosphate reductase subunit beta [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289184332|gb|ADC90757.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 400
Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats.
Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ + + +D K+M+ ++N +KY W + Y NN W+P E+ M D+ +
Sbjct: 62 LFNEKGDIGLDKKKMIGGNPTNLNDFNNVKYKWVSDIYRQMMNNFWIPEEINMSTDVQQY 121
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
++ L ER + L F +SL NN V I ++++ E L QAF+EAVHS
Sbjct: 122 RT---LPVAERRAYDKILSFLVFLDSLQTNN-VPFIAQYITANEAVLCLTIQAFQEAVHS 177
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ Y++ ++ + R + + L F D + L
Sbjct: 178 QSYSYMLDTICSPDE------RTEILYQWRDDEHLLARNKFIGDLFMAFQNDQSERNLMR 231
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ V + EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++++++++E
Sbjct: 232 VLVANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFRNILSELQVE 291
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L++ E ++ R M+ E EIA+ H + GL Y+Q++AN R +G
Sbjct: 292 RPDLFSAELVEEYRAMIKEGAEQEIAWGHYVLGDDIPGLTRQMVTDYIQYLANLRAQNLG 351
Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
++ P W+S+ D + +FFE + T Y + + D
Sbjct: 352 FAYIYPDNHSEPASMSWISQYSDANMVKTDFFEAKSTAYAKSTAMIDD 399
>gi|229495919|ref|ZP_04389645.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas
endodontalis ATCC 35406]
gi|229317232|gb|EEN83139.1| ribonucleoside-diphosphate reductase, beta subunit [Porphyromonas
endodontalis ATCC 35406]
Length = 346
Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats.
Identities = 86/350 (24%), Positives = 160/350 (45%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+ + + +R++N + ++N +KY W Y +A NN W+P E+ + D+
Sbjct: 6 KALFNEHGDIELSKRRLINGNTTNLNDFNNIKYPWVSNWYRTAMNNFWIPEEINLSQDVK 65
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
++ L+ E+ + L F +S+ N+ + +++ E L QAF+EAV
Sbjct: 66 DYR---ILSKAEKTAYDKILSFLIFLDSIQTANLP-NVGEYITANEVNLCLTIQAFQEAV 121
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ E R + + L + + L
Sbjct: 122 HSQSYSYMLDTICSPEE------RTSILYQWRDDEHLLRRNKFIGDIYNDFQLHKTPDQL 175
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
V + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +++
Sbjct: 176 ARTMVANYILEGVYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILELR 235
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T E + + M+ E L EIA+ + GL + Y+ ++AN R
Sbjct: 236 REQPELFTPEREAEFLEMIREGALQEIAWGKYVIGDEIEGLTSQMVSDYIMYLANLRSAN 295
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+GL +F + E P W+S+ + + +FFE + + Y + A ++ D
Sbjct: 296 LGLGVIFPGHEEEPASMSWVSQYSNSNLIKTDFFEAKPSAYAKSASIEDD 345
>gi|326386063|ref|ZP_08207687.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209288|gb|EGD60081.1| ribonucleotide-diphosphate reductase subunit beta [Novosphingobium
nitrogenifigens DSM 19370]
Length = 351
Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats.
Identities = 81/323 (25%), Positives = 151/323 (46%), Gaps = 18/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y WA+E + HWMP EVP+ +D W ++D ER ++ + FF
Sbjct: 7 RKTYKPFEYPWAYEFWKRQQQVHWMPEEVPLGEDCRDWAQ--KISDHERNLLTQIFRFFT 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
++ V + R E + L + E +H + +++ ++G+ E E + M+
Sbjct: 65 QADVEVQDCYHEKYGRVFKPTEVKMMLAAFSNMETIHIAAYSHLLDTIGMPESE-YGMFL 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + AK ++ + D+D++ + L +F EG+ + FA +++
Sbjct: 124 EYEEMKAKHDYMQLF------------GVDSDEDIARTLAMFGGFTEGLQLFASFAMLMN 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
R NKM G+ + + +RDE+LH + E TK ++ +
Sbjct: 172 FPRFNKMKGMGQIVSWSVRDETLHCEGITRLFQAFVQERD-CMTKAVREDIIDCCQKTVR 230
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
LE A+ +G G++A ++Y+++IA+ R Q+G +P++ E+P PW++ +++
Sbjct: 231 LEDAFIDLAFEQGPVPGMSAKEIKRYIRYIADWRLGQLGFQPIYMIEEHPLPWLTPLLNG 290
Query: 330 KKEKNFFETRVTEYQQGAE-LKW 351
+ NFFETR TEY + A W
Sbjct: 291 VEHANFFETRATEYSKAATRGNW 313
>gi|149916691|ref|ZP_01905193.1| putative ribonucleoside-diphosphate reductase beta chain
[Plesiocystis pacifica SIR-1]
gi|149822408|gb|EDM81797.1| putative ribonucleoside-diphosphate reductase beta chain
[Plesiocystis pacifica SIR-1]
Length = 356
Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats.
Identities = 104/342 (30%), Positives = 174/342 (50%), Gaps = 9/342 (2%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
V R+L+ + + L P+ Y + +Y A N W EV DL +
Sbjct: 16 TADVIARPPRLLDPGTCL-TLRPMAYPDFYAQYRQAIRNTWTVEEVDFSTDLRDLAER-- 72
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
+ ER +I+R + FFA+ +S+VANN+VL++YRHL+ PE R YL RQ +EEA+H +
Sbjct: 73 MGPAERHLIQRLVAFFATGDSIVANNLVLSLYRHLNAPEARMYLSRQLYEEALHVQFYLT 132
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
++ + D + F +PSI KA + L++ T+++ ++FL +L
Sbjct: 133 LLDTYVPDPDQRHAAFAAVETIPSIRRKAEFCLRWQDTVAAIP-RLDGPAHRRQFLLNLI 191
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
F EG++FY FA + L + G+A ++ RDES H+ F VI+ ++ + P
Sbjct: 192 CFAACTEGLFFYGAFAYVYFLRSRGLLHGLAAGTNWVFRDESAHMAFAFSVIDVVRDQEP 251
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
L+ E + M+ EA E+A+A + + G GL Y+++ A++R ++G+
Sbjct: 252 ELFDAELEAAVVEMIEEAVACEVAFAEDLLGLGVAGLTVADLRAYLEYCADQRLQRLGMA 311
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+ + NP +M E+ D+ + NFFE RV+ YQ G D
Sbjct: 312 TRYG-STNPLSFM-ELQDIPELANFFERRVSAYQHGVSGTID 351
>gi|84998662|ref|XP_954052.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate
reductase small chain [Theileria annulata]
gi|65305050|emb|CAI73375.1| ribonucleotide reductase R2 subunit or ribonucleoside-diphosphate
reductase small chain, putative [Theileria annulata]
Length = 322
Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats.
Identities = 86/315 (27%), Positives = 151/315 (47%), Gaps = 15/315 (4%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +LN + L P+ Y WE Y A + W E+ D W L DER
Sbjct: 16 EEFILNRNPNRTCLFPIVYPDFWEWYKKAQASFWTAEEIDFSMDYNHWH---KLNKDERH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ L R + PE + + Q E +HS T+ +I +
Sbjct: 73 FITNVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVK 132
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
DE E LF + ++ KANWA ++ +S + + ++ V Y E
Sbjct: 133 DEAEKRRLFMAIETIDAVKDKANWAKKWITDENSFAERIVSNFKNKLINYYRIVAYAAVE 192
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G+ F F + L + M G+ + I RDE LH +FG + + +K + P
Sbjct: 193 GILFSGSFCALFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYHNLKHKLP------- 245
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
++ + ++ EA ++E +Y +++P +G+N+ QY++F+A+R +G+ P++ T
Sbjct: 246 EEAVQQIIKEAVVVERSYICDSLPCDLIGMNSQLMTQYIEFVADRLLQSLGVRPVYNVT- 304
Query: 318 NPFPWMSEVIDLKKE 332
NPF WM ++I ++ +
Sbjct: 305 NPFDWM-QLISVQVK 318
>gi|17158292|ref|NP_477710.1| wsv188 [Shrimp white spot syndrome virus]
gi|14189948|gb|AAK55515.1|AF267731_1 ribonucleotide reductase small subunit [shrimp white spot syndrome
virus]
gi|15021490|gb|AAK77767.1|AF369029_98 ORF98, putative ribonucleotide reductase small subunit (RR2)
[shrimp white spot syndrome virus]
gi|17016586|gb|AAL33192.1| wsv188 [shrimp white spot syndrome virus]
gi|19481835|gb|AAL89111.1| WSSV243 [shrimp white spot syndrome virus]
Length = 413
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 89/336 (26%), Positives = 156/336 (46%), Gaps = 28/336 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
V+ + + P+ + WE Y W E+ + D W+ LT
Sbjct: 52 VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 108
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + +I
Sbjct: 109 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 168
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
L DE + LFN + P+I K WA+ + Q+ + + +L V +
Sbjct: 169 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNNDLA--------------ELIVAF 214
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I + + G+ ++I RDE LH +F ++ + ++ P
Sbjct: 215 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 271
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+++ ++ EA +E + ++P VG+N QY++F+A++ ++GLE +
Sbjct: 272 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 328
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
T NPFP+M I L+ + NFFE RV EYQ+ +
Sbjct: 329 NVT-NPFPFMD-NISLENKTNFFEKRVAEYQRAQVM 362
>gi|152993970|ref|YP_001359691.1| ribonucleotide-diphosphate reductase subunit beta [Sulfurovum sp.
NBC37-1]
gi|151425831|dbj|BAF73334.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp.
NBC37-1]
Length = 339
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 101/348 (29%), Positives = 170/348 (48%), Gaps = 14/348 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I E D+++ + +L +KY WA+ + NN W P EV M D+
Sbjct: 3 RKKIYNPESEERTSDRKIFGGDPTGIFELNDIKYQWAYNLWEMMLNNTWFPKEVDMTRDV 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+K LTD E+ + L +SL NNI+ + ++ PE L+RQAFEEA
Sbjct: 63 NDYK---RLTDAEKQAYDKVLAQLIFMDSLQTNNIIDNLNPFITAPEVNLILVRQAFEEA 119
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+HS ++ ++ S+ + E++ ++R + +K + + + LS ++ E
Sbjct: 120 LHSQSYAVMVDSISTNSEEIYELWRRDMKLKSKNDAIAKVYEELS--------ENPTDEN 171
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ + EG++FY+GF + +L R++KM+G A+ ++I RDE HL ++IN
Sbjct: 172 IVKAMFANQILEGIYFYSGFTYLYTLARSDKMLGTAQMIRFIQRDEVTHLLLFQNMINAT 231
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E P L+TKE M +A LE + +GL EQY+Q++A++R H
Sbjct: 232 KRERPELFTKELIDDVYQMFRDAVKLECEWGTYITQGQILGLTNEIIEQYIQYLADKRLH 291
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
+GLE ++ E+P W+ ++ NFFE VT Y +G+ D
Sbjct: 292 AVGLEKIYNV-EHPIKWVDNFSQFNDQKTNFFEGNVTNYSKGSLDLDD 338
>gi|42525851|ref|NP_970949.1| ribonucleotide-diphosphate reductase subunit beta [Treponema
denticola ATCC 35405]
gi|41815901|gb|AAS10830.1| ribonucleoside-diphosphate reductase, beta subunit [Treponema
denticola ATCC 35405]
Length = 351
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 89/350 (25%), Positives = 160/350 (45%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+ + ++M+ + ++N +KY WA + Y A NN W+P E+ M D+
Sbjct: 11 KALFNENGDIETHKRKMIGGNTTNLNDFNNMKYSWASDWYRQAMNNFWIPEEINMTTDVQ 70
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
++ L+ E+ + L F +S+ N+ + ++++ E L QAF+EAV
Sbjct: 71 DYR---KLSIPEKTAYDKILSFLIFLDSIQTANLP-NVGQYVTANEVNLCLTIQAFQEAV 126
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ E R K + L + D
Sbjct: 127 HSQSYSYMLDTICSPEE------RTEILYQWKDDEHLLRRNKFIGDLYNEFQSDKSALAF 180
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ V + EG++FY+GF +LGR NKM G ++ +YI RDE+ HL +I +++
Sbjct: 181 LKVCVANYILEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDENTHLWLFRSMIQELQ 240
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T + + R M+ E EIA+ + GLN+ Y+Q++ N RC
Sbjct: 241 KEEPQLFTPQNVELFRAMIKEGCEQEIAWGDYVIGNDIPGLNSQMITDYIQYLGNLRCEN 300
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G P++ + E P W S+ + + +FFE + T Y + + + D
Sbjct: 301 LGFAPIYDGHREEPQSMSWASQYSNANLIKTDFFEAKSTAYAKSSAMVDD 350
>gi|155370749|ref|YP_001426283.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella
virus FR483]
gi|155124069|gb|ABT15936.1| hypothetical protein FR483_N651L [Paramecium bursaria Chlorella
virus FR483]
Length = 348
Score = 230 bits (585), Expect = 4e-58, Method: Composition-based stats.
Identities = 96/336 (28%), Positives = 162/336 (48%), Gaps = 29/336 (8%)
Query: 19 VDDKRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
++ + +L + P+KY + Y A + W EVP+ D+A W+ + L DD
Sbjct: 26 INQEPLLADIGNRKYSAFPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWR--DKLNDD 83
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
ER IK LGFFA S+ +V NI +++P R + Q F E++HS + ++ +
Sbjct: 84 ERHFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDA 143
Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
L D+ E LF+ +P++ KA WA ++ D+ F + L + V
Sbjct: 144 LIEDDAERNSLFDAIETIPAVGKKAAWAQKFLSQ-------------DKSFAERLVAW-V 189
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
EG+ F F I L M G+ ++I RDE LH FG + ++++ +
Sbjct: 190 CVEGLLFSGSFCAIFWLRNRGVMPGLGLSNEFISRDEGLHQQFGELLYSKLENKLSL--- 246
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
+ + ++ EA E + E +P +G+N+ QY++F+A+R +G +
Sbjct: 247 ----AQVKAIVEEAVANEKEFICEAIPCRMIGMNSELMGQYLEFVADRIFVALGHPKQYN 302
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
T NPF +M E+I L+ + NFFE RV+EYQ+ +
Sbjct: 303 AT-NPFDFM-ELISLEGKSNFFERRVSEYQRPGVMN 336
>gi|58617056|ref|YP_196255.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
ruminantium str. Gardel]
gi|58416668|emb|CAI27781.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia
ruminantium str. Gardel]
Length = 329
Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats.
Identities = 85/321 (26%), Positives = 154/321 (47%), Gaps = 14/321 (4%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++
Sbjct: 15 YKPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQAD 72
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + E L + E +H + Y++ ++G+ E E + + +
Sbjct: 73 IEVNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 131
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K ++ ++ + K+ + + L VF EG+ + FA +L+ R
Sbjct: 132 VMKKKYDYMQRFEE---------CRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 182
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
KM G+ + + +RDE+LH I + N EN +W + +++ LE
Sbjct: 183 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDGDLKKELYEACSVIVTLED 242
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ + G GL+A ++Y+++IANRR Q+ LEP++ +NP W+ E+++ +
Sbjct: 243 EFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVEH 302
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE RVTEY + E W+
Sbjct: 303 TNFFENRVTEYTRAATEGTWE 323
>gi|57239055|ref|YP_180191.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
ruminantium str. Welgevonden]
gi|15811135|gb|AAL08816.1|AF308664_1 hypothetical ribonucleoside reductase beta chain [Ehrlichia
ruminantium]
gi|57161134|emb|CAH58047.1| putative ribonucleoside-diphosphate reductase beta chain [Ehrlichia
ruminantium str. Welgevonden]
Length = 324
Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats.
Identities = 85/321 (26%), Positives = 154/321 (47%), Gaps = 14/321 (4%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++
Sbjct: 10 YKPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQAD 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + E L + E +H + Y++ ++G+ E E + + +
Sbjct: 68 IEVNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 126
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K ++ ++ + K+ + + L VF EG+ + FA +L+ R
Sbjct: 127 VMKKKYDYMQRFEE---------CRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 177
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
KM G+ + + +RDE+LH I + N EN +W + +++ LE
Sbjct: 178 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDDLKKELYEACSVIVTLED 237
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ + G GL+A ++Y+++IANRR Q+ LEP++ +NP W+ E+++ +
Sbjct: 238 EFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVEH 297
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE RVTEY + E W+
Sbjct: 298 TNFFENRVTEYTRAATEGTWE 318
>gi|330837704|ref|YP_004412345.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374]
gi|329749607|gb|AEC02963.1| ribonucleotide reductase [Spirochaeta coccoides DSM 17374]
Length = 360
Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats.
Identities = 90/351 (25%), Positives = 163/351 (46%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
PI +D +RM+ + ++N LKYGW + Y A NN W+P E+ M D+
Sbjct: 19 RKPIFNEHGDTGLDKRRMVGGNTTNLNDFNNLKYGWTSDWYRQAMNNFWIPEEINMNTDV 78
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ L+ E+ + L F +S+ N+ + + ++ E L QAF+EA
Sbjct: 79 QDYR---RLSPAEKTAYDKILSFLIFLDSVQTANLP-NLAQFITANEVNLCLTIQAFQEA 134
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+HS ++ Y++ ++ + R + + L + + D
Sbjct: 135 IHSQSYSYMLDTICSPDE------RTGILYQWRDDAHLLARNKFIGDLYQNFMVNQDVCQ 188
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ V + EG++FY+GF +LGR NKM G ++ +YI RDE+ HL ++ ++
Sbjct: 189 IVKTMVANYILEGIYFYSGFMFFYNLGRNNKMPGSVQEIRYINRDETTHLWLFRSILREM 248
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P ++T + R M+ + EIA+ H + VGLN Y+Q++ N RC
Sbjct: 249 QKEEPAMFTPNLVDEYRAMIKQGADQEIAWGHYVIGDDIVGLNKDMVTDYIQYLGNLRCT 308
Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G +P+++ + + P W+ + + + +FFE R T Y + L D
Sbjct: 309 DLGFQPIYEGHDKEPETMKWVGQYSNANLIKTDFFEARNTAYAKSTSLLDD 359
>gi|313683656|ref|YP_004061394.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994]
gi|313156516|gb|ADR35194.1| ribonucleotide reductase [Sulfuricurvum kujiense DSM 16994]
Length = 339
Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats.
Identities = 96/348 (27%), Positives = 175/348 (50%), Gaps = 15/348 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I +V+D+++ + +L +KY WA+ + NN W P EV M D
Sbjct: 3 RKQIYNPTSTEHVNDRQIFGGNPTGIFELNNIKYQWAYNLWEMMLNNTWFPKEVDMTRDA 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+K LT+ E+ + L +SL NN++ + +++ PE L+RQ+FEEA
Sbjct: 63 VDYK---YLTEMEKTAYDKALSQLIFMDSLQTNNLMDNVNPYVTAPEINLILVRQSFEEA 119
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+HS ++ ++ S+ + E+++++R+ + K + L++ D +
Sbjct: 120 LHSQSYAVMVDSISQNSEEIYDLWRKDMMLKTKNDSIAARYDELAN--------DPSESA 171
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ EG++FY+GF I +L R+ KM+G A+ ++I RDE HL ++IN +
Sbjct: 172 FVKACFANQILEGIYFYSGFTYIYTLARSGKMLGSAQMIRFIQRDEVTHLVLFQNIINTL 231
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E L+T+E ++ M +A LE A+ +GL EQY+Q++A++R
Sbjct: 232 RRERSDLFTEELIEEVYDMFRKAVELETAWGKYITQGQILGLTNEIVEQYIQYLADQRLT 291
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
+GL+PL+ + +P W+ + ++ NFFE VT Y +G+ L +D
Sbjct: 292 AVGLKPLYNVS-HPIKWVDDFSKFNDQKTNFFEGTVTNYSKGS-LSFD 337
>gi|239628850|ref|ZP_04671881.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239518996|gb|EEQ58862.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 347
Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats.
Identities = 89/350 (25%), Positives = 161/350 (46%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+ + + + +RM+ + ++N +KY WA Y A NN W+P E+ + D+
Sbjct: 7 KSLFNPQGDTDKNSRRMIGGNTTNLNDFNNMKYTWASAWYRQAMNNFWIPEEINLSTDVK 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
++ L+ ER + L F +S+ N+ I ++++ E L Q F+EAV
Sbjct: 67 DYR---NLSAAEREAFDKILSFLVFLDSIQTANLP-CIGQYITANEVNLCLTIQGFQEAV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ S+ + R+ K + L T + + D L
Sbjct: 123 HSQSYSYMLDSICSP------VERDRILYQWKEDGHLLKRNTFIGNLYNEFQERKDDITL 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I ++K
Sbjct: 177 LRVMMANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFRSMIGELK 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T + + ML E EI + + GL Y++++ N R
Sbjct: 237 KEEPGLFTPDNVKMLEDMLREGVSQEIEWGCYVIGDEVPGLTKDMVSSYIKYLGNLRWTG 296
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G EPL++ Y + P W+++ + + +FFE + T Y + A + D
Sbjct: 297 LGFEPLYEGYGKEPESMAWVNQYSNANMVKTDFFEAKSTAYAKSAAIIDD 346
>gi|152989800|ref|YP_001355522.1| ribonucleotide-diphosphate reductase subunit beta [Nitratiruptor
sp. SB155-2]
gi|151421661|dbj|BAF69165.1| ribonucleoside-diphosphate reductase, beta subunit [Nitratiruptor
sp. SB155-2]
Length = 341
Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats.
Identities = 100/348 (28%), Positives = 175/348 (50%), Gaps = 15/348 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I E +V+++++ + +L +KY WA+ + N W P EV M D
Sbjct: 5 RKKIYNPESHESVNERKVFGGDPTGIFELNKIKYQWAYNLWEMMLANTWFPKEVDMTQDA 64
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+K LTD E+L + L +SL NN++ + +++ PE L+RQAFEEA
Sbjct: 65 RDYK---LLTDAEKLAYDKVLAQLIFMDSLQTNNLIDNVNPYITAPEINLILVRQAFEEA 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+HS ++ ++ S+ + E++ ++RE + K ++ + L+ + E
Sbjct: 122 LHSQSYAVMVDSISQNTDEIYELWREDLQLKQKNDYIAHVYEELA--------ANPSDEN 173
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ + EG++FY+GF + +L R+ KM+G A+ ++I RDE HL ++IN +
Sbjct: 174 IVKAMFANQILEGIYFYSGFTYMYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQNMINTV 233
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E P L+TKE M A LE ++ +GL EQY++++A+ R
Sbjct: 234 KKERPELFTKELIDDVYKMFEGAVDLETSWGKYITQGQILGLTDEIIEQYIKYLADDRLK 293
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
++GLEP++ E+P W+ + ++ NFFE VT Y +G+ L +D
Sbjct: 294 RVGLEPMYNV-EHPIKWVDDFSKFNDQKTNFFEGNVTNYSKGS-LDFD 339
>gi|58578998|ref|YP_197210.1| ribonucleotide-diphosphate reductase subunit beta [Ehrlichia
ruminantium str. Welgevonden]
gi|58417624|emb|CAI26828.1| Ribonucleoside-diphosphate reductase beta chain [Ehrlichia
ruminantium str. Welgevonden]
Length = 329
Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 85/321 (26%), Positives = 154/321 (47%), Gaps = 14/321 (4%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P Y WA++ +L HW+P EVP+ DD+ WK+ L+D E+ ++ + FF ++
Sbjct: 15 YKPFNYPWAYDAWLCQQRIHWLPEEVPLADDVQDWKTV--LSDKEKNLLVQIFRFFTQAD 72
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V N + E L + E +H + Y++ ++G+ E E + + +
Sbjct: 73 IEVNNCYMKHYSNIFKPTEICMMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFE 131
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K ++ ++ + K+ + + L VF EG+ + FA +L+ R
Sbjct: 132 VMKKKYDYMQRFEE---------CRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQR 182
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
KM G+ + + +RDE+LH I + N EN +W + +++ LE
Sbjct: 183 FGKMKGMGQIIAWSVRDETLHTESIIRLFNTFIQENYEIWDDDLKKELYEACSVIVTLED 242
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ + G GL+A ++Y+++IANRR Q+ LEP++ +NP W+ E+++ +
Sbjct: 243 EFINLAFACGDVEGLSAQEVKEYIRYIANRRLIQLNLEPIYSANKNPLLWLDEILNGVEH 302
Query: 333 KNFFETRVTEYQQ-GAELKWD 352
NFFE RVTEY + E W+
Sbjct: 303 TNFFENRVTEYTRAATEGTWE 323
>gi|7672989|gb|AAF66689.1|AF144620_1 ribonucleotide reductase small subunit [shrimp white spot syndrome
virus]
Length = 413
Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats.
Identities = 89/336 (26%), Positives = 156/336 (46%), Gaps = 28/336 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
V+ + + P+ + WE Y W E+ + D W+ LT
Sbjct: 52 VDTFKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 108
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + +I
Sbjct: 109 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 168
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
L DE + LFN + P+I K WA+ + Q+ + + +L V +
Sbjct: 169 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNNDLA--------------ELIVAF 214
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I + + G+ ++I RDE LH +F ++ + ++ P
Sbjct: 215 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 271
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+++ ++ EA +E + ++P VG+N QY++F+A++ ++GLE +
Sbjct: 272 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 328
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
T NPFP+M I L+ + NFFE RV EYQ+ +
Sbjct: 329 NVT-NPFPFMD-NISLENKTNFFEKRVAEYQRAQVM 362
>gi|227871657|ref|ZP_03990072.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268]
gi|227842499|gb|EEJ52714.1| ribonucleoside-diphosphate reductase [Oribacterium sinus F0268]
Length = 347
Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats.
Identities = 87/351 (24%), Positives = 165/351 (47%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
P+ E ++V ++RM+N + ++N ++Y W + Y A NN W+P E+ + D
Sbjct: 6 RKPLFNPEGDIDVRNRRMINFNTTNINDFNNMRYEWVSDWYRQAMNNFWVPEEINLNQDK 65
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ + L++ ER + L F +SL + N+ I ++++ E L Q F+E
Sbjct: 66 SDY---PKLSEAERRAYDKILSFLVYLDSLQSANLP-NISQYVTANEVNLCLSIQTFQEC 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+HS ++ Y++ ++ R K + L + + ++
Sbjct: 122 IHSQSYSYMLDTICNP------TERNDILYQWKTDEHLLRRNEFIGNLYNEFVEKQSKDS 175
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL F +++ ++
Sbjct: 176 FLRVCIANFILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWFFRNMLLEL 235
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E P L+ + + M+ + EIA+ + GLN E Y++++ N R
Sbjct: 236 KKEEPELFDEAHIAEITEMVKKGVEQEIAWGQYVIGDSIPGLNGKMVEDYIRYLGNLRYR 295
Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+GL L++ Y + P W+S+ D + +FFE R T Y + ++ D
Sbjct: 296 SLGLPNLYEGYEKEPESMKWVSQYADANMVKTDFFEARSTAYAKSTAIEDD 346
>gi|325261084|ref|ZP_08127822.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
D5]
gi|324032538|gb|EGB93815.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
D5]
Length = 347
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 93/350 (26%), Positives = 163/350 (46%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ E + V ++M+ + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 7 KPLFNPEGDIEVTKRKMIGGNTTNLNDFNHMKYNWVSDWYRQAMNNFWVPEEINLSVDIK 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+K L ER + L F +S+ N+ I +++ E L Q F+EAV
Sbjct: 67 DYK---MLPAAERRAYDKILSFLIFLDSIQTANLP-NIGEYITANEVNLCLSIQTFQEAV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ R K + L + ++ E L
Sbjct: 123 HSQSYSYMLDTICEP------QERNAVLYQWKEDRHLLERNEFIGNLYNAFQEEKSPEML 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + EG++FY+GF +LGR +M G ++ +YI RDE+ HL ++ ++K
Sbjct: 177 ACTLIANYILEGIYFYSGFMFFYNLGRNRRMPGSVQEIRYINRDENTHLWLFRSILMELK 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T E +K R+M+ E EI + H + GLN Y+Q++ N RC
Sbjct: 237 KEEPWLFTAEKTEKYRSMIREGCEQEIRWGHYVIGDDIQGLNREMITDYIQYLGNLRCRG 296
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+ LEP+++ + + P W+S+ + + +FFE R T Y + + L D
Sbjct: 297 LELEPVYEGHEKEPESMSWVSQFSNANMIKTDFFEARSTAYAKSSALVDD 346
>gi|88856487|ref|ZP_01131145.1| ribonucleotide-diphosphate reductase beta subunit [marine
actinobacterium PHSC20C1]
gi|88814354|gb|EAR24218.1| ribonucleotide-diphosphate reductase beta subunit [marine
actinobacterium PHSC20C1]
Length = 332
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 110/310 (35%), Positives = 182/310 (58%), Gaps = 4/310 (1%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+KY WA + Y A N W P E+ + +D+A +K +TD+ER + + +F +E
Sbjct: 14 LKPIKYQWAMDLYDQAVANTWFPNEIQLGEDIADFK---KMTDEERHAVTFLMSYFNPNE 70
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
LV + +Y ++S EC YL +Q +EEA H +F+Y++ + +D +N + ++P
Sbjct: 71 LLVNKALAFGVYPYVSAAECSLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHIDIP 130
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
S+ K + L+Y + ++ + T + Q+F+++L + VV EG+WFY+GF LS +
Sbjct: 131 SMARKEEFELKYIRRMTEQTLDINTIEGKQDFIRNLVAYNVVLEGIWFYSGFMVALSFRQ 190
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
N + +++RDESLHL FGI++I + ENP + T+EF + R M+ +A +E
Sbjct: 191 RNLLRNFGSLMDWVVRDESLHLKFGINLILTVLEENPEIQTEEFADEIRQMILDAVEMEE 250
Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
AY H+ +P G +GLNA QY++++A+RR ++G EP +K T NP WM+ D +
Sbjct: 251 AYNHDLLPGGILGLNANYINQYVKYLADRRLEELGFEPHYKVT-NPAKWMATANDTLELV 309
Query: 334 NFFETRVTEY 343
NFFE+ T Y
Sbjct: 310 NFFESTNTSY 319
>gi|225712968|gb|ACO12330.1| Ribonucleoside-diphosphate reductase small chain [Lepeophtheirus
salmonis]
Length = 335
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 84/331 (25%), Positives = 147/331 (44%), Gaps = 29/331 (8%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
++ +L + + P+ Y W Y A W EV + DL W L D
Sbjct: 12 QEKNEIILTPNNSKYVMFPIVYKDIWFMYKKALATFWTVEEVDLSKDLMDW---AKLNKD 68
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+ I L FFA+S+ +V N++ + E R + Q E +HS + +I +
Sbjct: 69 EKHFISNVLAFFAASDGIVNENLLERFASEVQIAEARSFYGFQIMIENIHSEMYSLLIDT 128
Query: 138 LGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
D+ E LFN + + KA WAL++ D+ F L F
Sbjct: 129 YIEDDKEKDKLFNSILTIECVKKKAEWALRWI-------------TGDKPFATRLVAFAA 175
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
V EG++F FA + L + M G+ + I RDE H +F + + ++ +
Sbjct: 176 V-EGIFFSGSFASLFWLKKRGLMPGLTFSNELISRDEGSHTDFACLLYSHLENKLDP--- 231
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
+ ++ E +E + +++P G +G+NA + Y++F+A+ + +E +
Sbjct: 232 ----KYVLQIIKEGVEIEKEFVADSLPVGLIGMNAKMMKNYIEFVADNLLENLNIEKYY- 286
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
+T+NPF +M I + + NFF+ RV+EYQ+
Sbjct: 287 HTKNPFNFMD-NISMTGKTNFFDKRVSEYQR 316
>gi|210616053|ref|ZP_03290925.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787]
gi|210149961|gb|EEA80970.1| hypothetical protein CLONEX_03144 [Clostridium nexile DSM 1787]
Length = 355
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 159/349 (45%), Gaps = 15/349 (4%)
Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
P+ + V ++M+ + ++N +KY W Y A NN W+P E+ + D+
Sbjct: 16 PLFNPNGDIQVQKRKMIGGNTTNLNDFNNMKYTWVSGWYRQAMNNFWIPEEINLGVDIKD 75
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
++ L E+ + L F +S+ N+ I +++ E L QAF+EAVH
Sbjct: 76 YR---NLPKAEKRAYDKILSFLIFLDSIQTANLP-GISEYITANEVNLCLSIQAFQEAVH 131
Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
S ++ Y++ ++ R K + L + + E L
Sbjct: 132 SQSYSYMLDTICEP------QERNEVLYQWKEDEHLLARNEFIGNLYNAFQTEKSMEMLV 185
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
V + EG++FY+GF +LGR M G ++ +YI RDE+ HL +++ ++K
Sbjct: 186 KTIVANYILEGIYFYSGFMFFYNLGRNQLMPGSVQEIRYINRDENTHLWLFRNILIELKK 245
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
E P L+T+++ + R+M+ E EI + H + GLN Y+Q++ N RC +
Sbjct: 246 EQPDLFTEQYIDEYRSMIKEGCEQEIKWGHYVIGDDVQGLNREMITDYVQYLGNLRCTNL 305
Query: 308 GLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
G P+++ E W+S+ + + +FFE R T Y + + L D
Sbjct: 306 GFAPIYEGHETEPESMRWVSQYSNANAIKTDFFEARSTAYAKSSALVDD 354
>gi|190572323|ref|YP_001970168.1| putative ribonucleotide diphosphate reductase, small chain
[Stenotrophomonas maltophilia K279a]
gi|190010245|emb|CAQ43853.1| putative ribonucleotide diphosphate reductase, small chain
[Stenotrophomonas maltophilia K279a]
Length = 339
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 97/321 (30%), Positives = 174/321 (54%), Gaps = 8/321 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y ++ Y +A N W E+ Q D+ S ++ ER +I R + FFA+
Sbjct: 17 TLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHS--KMSPGERHLIHRLVAFFATG 74
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + D E F+
Sbjct: 75 DSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPEERAKAFSAV 134
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+ SI KA++ ++ ++ S + T++ ++FL + F EG++F+ FA +
Sbjct: 135 ENIDSIKKKADFCFKWIDSIQSLT-RIETREQRRQFLLNQICFAACIEGLFFFAAFAYVY 193
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDES H+ F + + ++ E P L+ +E +Q+ ML EA
Sbjct: 194 YFRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDEEMKQQVYDMLAEAI 253
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + + G G++ QY+Q A++ ++G+E + NP P+M E+ D+
Sbjct: 254 ECEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYNV-RNPLPFM-ELQDV 311
Query: 330 KKEKNFFETRVTEYQQGAELK 350
++ NFFE RV+ YQ G + +
Sbjct: 312 QELTNFFERRVSAYQVGVQGE 332
>gi|134301991|ref|YP_001121960.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
WY96-3418]
gi|134049768|gb|ABO46839.1| biofunctional glutaredoxin 3 protein/Ribonucleoside-diphosphate
reductase beta subunit [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 410
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S
Sbjct: 99 TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V N N E R L A E +H + + +LGL + E ++ + E
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
++T K ++ + + L V EG+ + FA +L+
Sbjct: 217 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELE 323
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
+ G GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++
Sbjct: 324 DRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 383
Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
NFFE RVTEY+ WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGSWD 405
>gi|56707665|ref|YP_169561.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110670136|ref|YP_666693.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
FSC198]
gi|187931834|ref|YP_001891819.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. mediasiatica
FSC147]
gi|224456732|ref|ZP_03665205.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254370173|ref|ZP_04986179.1| hypothetical protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254874478|ref|ZP_05247188.1| nrdB, biofunctional protein, glutaredoxin 3
protein/ribonucleoside-diphosphate reductase, beta
subunit [Francisella tularensis subsp. tularensis
MA00-2987]
gi|56604157|emb|CAG45165.1| Biofunctional protein, glutaredoxin 3
protein/Ribonucleoside-diphosphate reductase, beta
subunit [Francisella tularensis subsp. tularensis SCHU
S4]
gi|110320469|emb|CAL08548.1| Biofunctional protein, glutaredoxin 3
protein/Ribonucleoside-diphosphate reductase, beta
subunit [Francisella tularensis subsp. tularensis
FSC198]
gi|151568417|gb|EDN34071.1| hypothetical protein FTBG_01287 [Francisella tularensis subsp.
tularensis FSC033]
gi|187712743|gb|ACD31040.1| bifunctional protein: glutaredoxin 3/ribonucleotide reductase beta
subunit [Francisella tularensis subsp. mediasiatica
FSC147]
gi|254840477|gb|EET18913.1| nrdB, biofunctional protein, glutaredoxin 3
protein/ribonucleoside-diphosphate reductase, beta
subunit [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158827|gb|ADA78218.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. tularensis
NE061598]
Length = 410
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S
Sbjct: 99 TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V N N E R L A E +H + + +LGL + E ++ + E
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
++T K ++ + + L V EG+ + FA +L+
Sbjct: 217 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELE 323
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
+ G GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++
Sbjct: 324 DRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 383
Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
NFFE RVTEY+ WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGSWD 405
>gi|303389600|ref|XP_003073032.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303302176|gb|ADM11672.1| ribonucleoside-diphosphate reductase small subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 326
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 82/328 (25%), Positives = 153/328 (46%), Gaps = 29/328 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ + + L P+++ W Y A ++ W EV + D+ WK L E+
Sbjct: 8 EPLLDPKEERFVLFPIQHEDVWRMYKKAESSFWTVEEVLLDKDIEDWK---KLNPKEKHF 64
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+S+ +V N+V + E + + Q E +HS + +I + D
Sbjct: 65 ISNVLAFFAASDGIVNLNLVERFSSEVKMLEAKLFYGFQIAIENIHSEMYSLLIDTYVRD 124
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ LFN + +PS+ KA+WA+++ + D + +F L + EG
Sbjct: 125 GEQKKFLFNAVKTIPSVKDKADWAIKWIE------------DKNSDFATRLVA-FACVEG 171
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH F + + +
Sbjct: 172 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCEFACLLHRRYLKQ--------KC 223
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ + ++ +A +E + E++P +G+N +Y++F+A+ + E ++ +T N
Sbjct: 224 KRVKEVVMDAVEVEKRFLSESLPVDLIGMNCQLMCKYIEFVADTLLENLEEEKIY-HTPN 282
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQG 346
PF +M E I L + NFF+ R ++YQ+
Sbjct: 283 PFDFM-ENISLVGKTNFFDKRESQYQKA 309
>gi|155122339|gb|ABT14207.1| hypothetical protein MT325_M653L [Paramecium bursaria chlorella
virus MT325]
Length = 326
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 96/335 (28%), Positives = 161/335 (48%), Gaps = 29/335 (8%)
Query: 20 DDKRMLNARSDV-NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
+ + +L + P+KY + Y A + W EVP+ D+A W+ + L DDE
Sbjct: 5 NQEPLLADIGNRKYSAFPIKYPDVFAMYKKAVSTFWTVEEVPLNQDIADWR--DKLNDDE 62
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R IK LGFFA S+ +V NI +++P R + Q F E++HS + ++ +L
Sbjct: 63 RHFIKTILGFFAGSDGMVMENIANNFSTEVTDPSARLFYAYQMFNESIHSEMYSLLLDAL 122
Query: 139 GLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D+ E LF+ +P++ KA WA ++ D+ F + L + V
Sbjct: 123 IEDDAERNSLFDAIETIPAVGKKAAWAQKFLSQ-------------DKSFAERLVAW-VC 168
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG+ F F I L M G+ ++I RDE LH FG + ++++ +
Sbjct: 169 VEGLLFSGSFCAIFWLRNRGVMPGLGLSNEFISRDEGLHQQFGELLYSKLENKLSL---- 224
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+ + ++ EA E + E +P +G+N+ QY++F+A+R +G +
Sbjct: 225 ---AQVKAIVEEAVANEKEFICEAIPCRMIGMNSELMGQYLEFVADRIFVALGHPKQYNA 281
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
T NPF +M E+I L+ + NFFE RV+EYQ+ +
Sbjct: 282 T-NPFDFM-ELISLEGKSNFFERRVSEYQRPGVMN 314
>gi|254521240|ref|ZP_05133295.1| ribonucleoside-diphosphate reductase, beta subunit
[Stenotrophomonas sp. SKA14]
gi|219718831|gb|EED37356.1| ribonucleoside-diphosphate reductase, beta subunit
[Stenotrophomonas sp. SKA14]
Length = 339
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 96/321 (29%), Positives = 169/321 (52%), Gaps = 8/321 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y ++ Y +A N W E+ Q D+ S ++ ER +I R + FFA+
Sbjct: 17 TLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDITDLHS--KMSPGERHLIHRLVAFFATG 74
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + D E F
Sbjct: 75 DSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPEERVKAFAAV 134
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+ SI KA++ ++ ++ T+ ++FL + F EG++F+ FA +
Sbjct: 135 ENIDSIKKKADFCFKWIDSIQDLK-RIETRAERRQFLLNQICFAACIEGLFFFAAFAYVY 193
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDES H+ F + + ++ E P L+ E +Q+ ML EA
Sbjct: 194 YFRSRGLLPGLASGTNWVFRDESAHMEFAFESVRVVREEEPDLFDDEMKQQVYDMLAEAI 253
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + + G G++ QY+Q A++ ++G+E + NP P+M E+ D+
Sbjct: 254 ECEVQFAEDVLSGGVAGISTRDMRQYLQHCADQHFAKLGMEKKYNV-RNPLPFM-ELQDV 311
Query: 330 KKEKNFFETRVTEYQQGAELK 350
++ NFFE RV+ YQ G + +
Sbjct: 312 QELTNFFERRVSAYQVGVQGE 332
>gi|167756571|ref|ZP_02428698.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402]
gi|237733862|ref|ZP_04564343.1| ribonucleotide-diphosphate reductase subunit beta [Mollicutes
bacterium D7]
gi|167702746|gb|EDS17325.1| hypothetical protein CLORAM_02108 [Clostridium ramosum DSM 1402]
gi|229382943|gb|EEO33034.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus
sp. D7]
Length = 346
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 90/350 (25%), Positives = 159/350 (45%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+ + ++V +RM+N + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 6 KALFNAKGDIDVRKRRMINGNTTNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLTQDIR 65
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
++ L++ ER + L F +SL N+ I +++ E L QAF+EAV
Sbjct: 66 DYR---LLSEAERTAYDKILSFLVFLDSLQTANLP-NIGEYITANEINLCLTIQAFQEAV 121
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ S+ R+ K + L + + D L
Sbjct: 122 HSQSYSYMLDSICSPTK------RDEILYQWKFDEHLLKRNEFIGEQYNAFLEHKDSFHL 175
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + EG++FY+GF +LGR KM G A++ +YI RDE+ HL ++I +++
Sbjct: 176 MKTIMANYILEGIYFYSGFMFFYNLGRMGKMSGSAQEIRYINRDENTHLWLFRNMIIELQ 235
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T E + R ML EIA+ + GL Y+ ++ N R
Sbjct: 236 KEEPTLFTPEKIEVYRNMLKRGVEEEIAWGQYVLGNRIEGLTMDMVSDYIHYLGNLRAFS 295
Query: 307 IGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+ EPL++ W+S + + +FFE + T Y + + ++ D
Sbjct: 296 LNFEPLYEGFETEPEAMKWVSIYSNANNIKTDFFEAKSTAYAKSSAIEDD 345
>gi|118497575|ref|YP_898625.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. novicida
U112]
gi|195536272|ref|ZP_03079279.1| ribonucleoside-diphosphate reductase, beta subunit domain
[Francisella tularensis subsp. novicida FTE]
gi|208779374|ref|ZP_03246720.1| ribonucleoside-diphosphate reductase, beta subunit domain
[Francisella novicida FTG]
gi|254372936|ref|ZP_04988425.1| hypothetical protein FTCG_00507 [Francisella tularensis subsp.
novicida GA99-3549]
gi|118423481|gb|ABK89871.1| bifunctional protein: glutaredoxin 3 /ribonucleotide reductase beta
subunit [Francisella novicida U112]
gi|151570663|gb|EDN36317.1| hypothetical protein FTCG_00507 [Francisella novicida GA99-3549]
gi|194372749|gb|EDX27460.1| ribonucleoside-diphosphate reductase, beta subunit domain
[Francisella tularensis subsp. novicida FTE]
gi|208745174|gb|EDZ91472.1| ribonucleoside-diphosphate reductase, beta subunit domain
[Francisella novicida FTG]
gi|332678274|gb|AEE87403.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Francisella cf. novicida Fx1]
Length = 410
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S
Sbjct: 99 TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V N N E R L A E +H + + +LGL + E ++ + E
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
++T K ++ + + L V EG+ + FA +L+
Sbjct: 217 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELE 323
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
+ G GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++
Sbjct: 324 DKFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 383
Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
NFFE RVTEY+ WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGSWD 405
>gi|260909050|gb|ACX54162.1| RR2 protein [Shrimp white spot syndrome virus]
gi|260909052|gb|ACX54163.1| RR2 protein [Shrimp white spot syndrome virus]
gi|260909054|gb|ACX54164.1| RR2 protein [Shrimp white spot syndrome virus]
gi|260909056|gb|ACX54165.1| RR2 protein [Shrimp white spot syndrome virus]
Length = 349
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 89/336 (26%), Positives = 156/336 (46%), Gaps = 28/336 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
V+ + + P+ + WE Y W E+ + D W+ LT
Sbjct: 37 VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 93
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + +I
Sbjct: 94 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 153
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
L DE + LFN + P+I K WA+ + Q+ + + +L V +
Sbjct: 154 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNNDLA--------------ELIVAF 199
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I + + G+ ++I RDE LH +F ++ + ++ P
Sbjct: 200 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 256
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+++ ++ EA +E + ++P VG+N QY++F+A++ ++GLE +
Sbjct: 257 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 313
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
T NPFP+M I L+ + NFFE RV EYQ+ +
Sbjct: 314 NVT-NPFPFMD-NISLENKTNFFEKRVAEYQRAQVM 347
>gi|311743885|ref|ZP_07717691.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium
marinum DSM 15272]
gi|311313015|gb|EFQ82926.1| ribonucleotide-diphosphate reductase beta subunit [Aeromicrobium
marinum DSM 15272]
Length = 357
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 105/317 (33%), Positives = 179/317 (56%), Gaps = 4/317 (1%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+ Y WA E Y A N W P E+ + +DLA ++ ++D+ER + + +F +E
Sbjct: 45 LKPVTYPWAMELYDQAVANTWFPNEIQLGEDLADFE---RMSDEERHALTFLMSYFNPNE 101
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
LV + +Y +++ EC YL +Q +EEA H +F+Y++ + +D + + VP
Sbjct: 102 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYGSHVTVP 161
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
S+ AK + +++ + ++ + T + Q+F+++L + V+ EG+WFY+GF LS +
Sbjct: 162 SMAAKEEFEIRFIRRMTEQTLDITTTEGKQDFVRNLVAYNVILEGIWFYSGFMVALSFRQ 221
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
N + +I+RDESLHL FGI++I + ENP + T EF + + M+ +A +E
Sbjct: 222 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPEVATAEFAAEIQQMVLDAVEMEE 281
Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
AY + +P G +GLNA QY++++A+RR ++G P + T NP WM+ D +
Sbjct: 282 AYNRDLLPGGILGLNADYINQYVRYLADRRLEELGFGPHYGAT-NPAKWMATANDTLQLV 340
Query: 334 NFFETRVTEYQQGAELK 350
NFFE T Y+ A+L
Sbjct: 341 NFFEATNTSYEVNAKLT 357
>gi|254374389|ref|ZP_04989871.1| glutaredoxin [Francisella novicida GA99-3548]
gi|151572109|gb|EDN37763.1| glutaredoxin [Francisella novicida GA99-3548]
Length = 410
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S
Sbjct: 99 TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V N N E R L A E +H + + +LGL + E ++ + E
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
++T K ++ + + L V EG+ + FA +L+
Sbjct: 217 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELE 323
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
+ G GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++
Sbjct: 324 DKFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 383
Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
NFFE RVTEY+ WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGSWD 405
>gi|332184137|gb|AEE26391.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Francisella cf. novicida 3523]
Length = 410
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 82/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S
Sbjct: 99 TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V N N E R L A E +H + + +LGL + E ++ + E
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
++T K ++ + + L V EG+ + FA +L+
Sbjct: 217 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R KM G+ + ++ +RDES+H+ + ENP++ +F+++ M +A LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELE 323
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
+ G GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++
Sbjct: 324 DKFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 383
Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
NFFE RVTEY+ WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGSWD 405
>gi|254369307|ref|ZP_04985319.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122257|gb|EDO66397.1| hypothetical protein FTAG_00272 [Francisella tularensis subsp.
holarctica FSC022]
Length = 410
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S
Sbjct: 99 TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V N N E R L A E +H + + +LGL + E ++ + E
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
++T K ++ + + L V EG+ + FA +L+
Sbjct: 217 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELE 323
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
+ G GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++
Sbjct: 324 DRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 383
Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
NFFE RVTEY+ WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGSWD 405
>gi|289677030|ref|ZP_06497920.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. syringae FF5]
Length = 243
Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 153/243 (62%), Positives = 192/243 (79%)
Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
NPE RQY+LRQAFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++
Sbjct: 1 NPEGRQYILRQAFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSI 60
Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
S P F TGT D D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+R
Sbjct: 61 SDPKFETGTVDTDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILR 120
Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
DES+HLNFGIDVINQIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA
Sbjct: 121 DESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNA 180
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
E Y++FIANRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L
Sbjct: 181 AMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGAL 240
Query: 350 KWD 352
WD
Sbjct: 241 SWD 243
>gi|89256330|ref|YP_513692.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. holarctica
LVS]
gi|115314778|ref|YP_763501.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. holarctica
OSU18]
gi|156502403|ref|YP_001428469.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|167010840|ref|ZP_02275771.1| ribonucleotide-diphosphate reductase beta subunit [Francisella
tularensis subsp. holarctica FSC200]
gi|254367665|ref|ZP_04983686.1| biofunctional protein: glutaredoxin 3
protein-ribonucleoside-diphosphate reductase, beta
subunit [Francisella tularensis subsp. holarctica 257]
gi|290952877|ref|ZP_06557498.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. holarctica
URFT1]
gi|295313922|ref|ZP_06804487.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella tularensis subsp. holarctica
URFT1]
gi|89144161|emb|CAJ79423.1| Biofunctional protein, glutaredoxin 3
protein/Ribonucleoside-diphosphate reductase, beta
subunit [Francisella tularensis subsp. holarctica LVS]
gi|115129677|gb|ABI82864.1| ribonucleoside-diphosphate reductase [Francisella tularensis subsp.
holarctica OSU18]
gi|134253476|gb|EBA52570.1| biofunctional protein: glutaredoxin 3
protein-ribonucleoside-diphosphate reductase, beta
subunit [Francisella tularensis subsp. holarctica 257]
gi|156253006|gb|ABU61512.1| bifunctional glutaredoxin /ribonucleoside-diphosphate reductase
beta subunit [Francisella tularensis subsp. holarctica
FTNF002-00]
Length = 410
Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats.
Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S
Sbjct: 99 TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V N N E R L A E +H + + +LGL + E ++ + E
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
++T K ++ + + L V EG+ + FA +L+
Sbjct: 217 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELE 323
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
+ G GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++
Sbjct: 324 DRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 383
Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
NFFE RVTEY+ WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGSWD 405
>gi|283768723|ref|ZP_06341634.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia
extructa W1219]
gi|283104509|gb|EFC05882.1| ribonucleoside-diphosphate reductase, beta subunit [Bulleidia
extructa W1219]
Length = 348
Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats.
Identities = 95/357 (26%), Positives = 168/357 (47%), Gaps = 15/357 (4%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLN-ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M+ P+ E ++V +R+LN +++N +KY W Y A NN W+P E+
Sbjct: 1 MSKGIQRKPLFNPEGDIDVCHRRLLNFDTTNINDFNNMKYTWVSNWYRQAMNNFWIPEEI 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D + + L+ ER + L F +SL + N+ I +++ E L
Sbjct: 61 NLNQDKSDY---LNLSLAERSAYDKILSFLVYLDSLQSANLP-NIASYVTANEVNLCLSI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
Q F+E +HS ++ Y++ S+ E R K + L T + +
Sbjct: 117 QTFQECIHSQSYSYMLDSICSPE------QRNEILYQWKYDEHLLKRNTFIGHLYNEFLE 170
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
D++ + + + EG++FY+GF +L R KM G ++ +YI RDE+ HL
Sbjct: 171 YQDKQSFLKVCIANFILEGIYFYSGFMFFYNLARHGKMPGSVQEIRYINRDENTHLWLFR 230
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+++ +++ E P L+T Q + M+HE EIA+ + GLN+ E Y++++
Sbjct: 231 NILLELQKEEPELFTDSNIQMIKDMIHEGVQQEIAWGQYVIGNNIPGLNSQMVEDYIKYL 290
Query: 300 ANRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N R +GL L++ Y E P W+ + D + +FFE RVT Y + + ++ D
Sbjct: 291 GNTRFATLGLGNLYEGYEEEPETMRWVKQYSDANMVKTDFFEARVTAYAKSSAIEDD 347
>gi|209877302|ref|XP_002140093.1| ribonucleotide-diphosphate reductase, small subunit
[Cryptosporidium muris RN66]
gi|209555699|gb|EEA05744.1| ribonucleotide-diphosphate reductase, small subunit, putative
[Cryptosporidium muris RN66]
Length = 346
Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats.
Identities = 84/333 (25%), Positives = 152/333 (45%), Gaps = 29/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +L++ + ++Q++ + W Y + W E+ + D+ W+S L + E+
Sbjct: 26 HEEPVLSSDTRLHQIIKSEIEVMWSMYKKEEASFWTAEEIDLGQDMRDWES---LKEPEK 82
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
IK L FFA+S+ +V N+ + + + E R Y Q E +HS T+ +I
Sbjct: 83 HFIKYVLAFFAASDGIVMENLAVNFLKEIQIEEARMYYGFQIAMEQIHSETYSLLIDQYI 142
Query: 140 ---LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D LF +P++ KA WA ++ S + + +
Sbjct: 143 SDVKDRQMLFEAISHLPAVKTKAKWATKWMNNNRS--------------FAERIIGFCAV 188
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG+ F F I L + M G+ + I RDE +H +FG + + P+ +E
Sbjct: 189 EGILFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGIHADFGCLLYKTLNNRLPYGRVQE 248
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ EA +E A+ +++P +G+N+ QY++F+A+R + + ++ T
Sbjct: 249 -------IIAEAVEVERAFLCDSLPVDLIGMNSRLMAQYIEFVADRLLFALDVPKIYNVT 301
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF WM +I L+ + NFFE RV EYQ +
Sbjct: 302 -NPFDWMD-LISLQGKTNFFEKRVAEYQMAGVM 332
>gi|188588149|ref|YP_001919720.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
botulinum E3 str. Alaska E43]
gi|251778737|ref|ZP_04821657.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|188498430|gb|ACD51566.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum E3 str. Alaska E43]
gi|243083052|gb|EES48942.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 344
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 93/348 (26%), Positives = 164/348 (47%), Gaps = 13/348 (3%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ + KR++N + ++N +KY WA + Y NN W+P E+ + DL
Sbjct: 6 KPLFNEFGDRDPRLKRVINGNTTNLNDFNNMKYTWASDWYRQGMNNFWIPEEINLAQDLK 65
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+K L +ER + L F +S+ N+ I +++ E L Q+F+EAV
Sbjct: 66 DYK---KLLPEERTAYDKILSFLIFLDSIQTANLS-NINSYITASEINLCLTIQSFQEAV 121
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ S+ E R K + L + + ++ L
Sbjct: 122 HSQSYSYMLDSICSPEE------RNEILYQWKDDEILLKRNKFIGDLYNEFINNPNEYNL 175
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I +++
Sbjct: 176 IKTLMANYILEGIYFYSGFMFFYNLERNGKMPGSAQEIRYINRDENTHLWLFRNIIKELQ 235
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
ENP +T + + + + M+ EI + H + G+N E Y++++ N+R +
Sbjct: 236 SENPESFTTDLKNELKEMMRIGVENEILWGHYVIGDKIQGINKKLIEDYIKYLGNKRLKE 295
Query: 307 IGLEPLFKY-TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
IGL LF+ ENP W+ V + + +FFE + T Y + + L D
Sbjct: 296 IGLGMLFEGFEENPATWVDVVANSNSVKTDFFEAKSTAYAKVSTLIDD 343
>gi|322510501|gb|ADX05815.1| putative ribonucleotide reductase small subunit [Organic Lake
phycodnavirus 1]
Length = 324
Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats.
Identities = 94/329 (28%), Positives = 154/329 (46%), Gaps = 28/329 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L + + P+ W+ Y + W E+ DL W N L +E+
Sbjct: 6 NEPLLTEDDNRFVMFPIVDEAIWKMYKKQVDCFWRAEEIDTSKDLNHW---NKLQPEEQY 62
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FFASS+ +V N+ L + E R + Q E +HS T+ +I S
Sbjct: 63 YIKMILAFFASSDGIVLENLGLRFMNEVQLSEARAFYGFQIAMENIHSETYSLLIDSYIK 122
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
DE E LF+ P I K WA+++ D F L + E
Sbjct: 123 DENEKNKLFHSLEHFPCIEKKGKWAMKWIN------------DKKSNFSTRLVA-FACVE 169
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L + M G+ + I RDE+LH F + + + L K
Sbjct: 170 GIFFSGAFCSIYWLKKRGIMPGLTFSNELISRDEALHTEFAVHLFH-------KLEKKIN 222
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
++K R ++ EA ++E + E++P +G+N+ QY++++A+R Q+G E ++ T
Sbjct: 223 KKKIREIIEEAVVIEKEFIVESLPCRLIGMNSDLMTQYIEYVADRLMIQLGCEEIY-RTN 281
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
NPF +M E+I L+++ NFFE+RV+EY
Sbjct: 282 NPFDFM-ELISLEQKTNFFESRVSEYSLA 309
>gi|57339646|gb|AAW49810.1| hypothetical protein FTT0532 [synthetic construct]
Length = 445
Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats.
Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 17/322 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S
Sbjct: 125 TYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 183
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V N N E R L A E +H + + +LGL + E ++ + E
Sbjct: 184 DVAVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 242
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
++T K ++ + + L V EG+ + FA +L+
Sbjct: 243 KAMTDKIDFMMD-------------ADPTTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 289
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE
Sbjct: 290 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELE 349
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
+ G GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++
Sbjct: 350 DRFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGAD 409
Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
NFFE RVTEY+ WD
Sbjct: 410 HTNFFENRVTEYEVAGLTGSWD 431
>gi|333030473|ref|ZP_08458534.1| ribonucleotide reductase [Bacteroides coprosuis DSM 18011]
gi|332741070|gb|EGJ71552.1| ribonucleotide reductase [Bacteroides coprosuis DSM 18011]
Length = 347
Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats.
Identities = 91/350 (26%), Positives = 162/350 (46%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+ ++V+ +RM+N + ++N +KYGW Y A NN W+P E+ M D+
Sbjct: 7 KALFNEHGDIDVNKRRMINGNTTNMNDFNNMKYGWVSNWYRQAMNNFWIPEEINMSQDVK 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
++ L+ E+ R L F +S+ N+ + +++ E L QAF+EAV
Sbjct: 67 DYR---NLSGAEKRAYDRTLSFLIFLDSIQTANLP-YVGEYVTANEVNLCLTIQAFQEAV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ S+ E RE + + L + + L
Sbjct: 123 HSQSYSYMLDSICSPEE------RERILYQWRNDEHLLKRNKFIGDIYNEFQLNKSTHQL 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
V + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +++
Sbjct: 177 LKTMVANYILEGIYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFQSIILELR 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T E + R M+ E E+A+ + + GL Y++++AN RC
Sbjct: 237 KEEPQLFTVEAIAEFRAMIKEGAEQEMAWGEYVIEEEIEGLTQEMVSDYIKYLANLRCEN 296
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G E L+ Y + P W+++ + + +FFE + + Y + + D
Sbjct: 297 LGFEILYPGYEDEPASMSWVAQYSNANMIKTDFFEAKPSAYAKSTSIIDD 346
>gi|332297025|ref|YP_004438947.1| ribonucleotide reductase [Treponema brennaborense DSM 12168]
gi|332180128|gb|AEE15816.1| ribonucleotide reductase [Treponema brennaborense DSM 12168]
Length = 346
Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats.
Identities = 85/349 (24%), Positives = 148/349 (42%), Gaps = 15/349 (4%)
Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
P+ + +V + M+ + ++N +KY W + Y A NN W+P E+ + D
Sbjct: 7 PLFNPDGDADVRLRSMVGGNTTNLNDFNNMKYQWVSDWYRQAMNNFWIPEEINLSQDTKD 66
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
+ L + ER + L F +S+ N+ + +++ E L Q F+E VH
Sbjct: 67 Y---PHLDEAERTAYDKILSFLIFLDSIQTANLP-NVGEYITANEVNLCLSIQTFQECVH 122
Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
S ++ Y++ ++ E R K + L T + + D
Sbjct: 123 SQSYSYMLDTICSPE------QRNEILYQWKTDERLLKRNTFIGGCYNDFQEHKDFFRFM 176
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+ + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K
Sbjct: 177 KVLIANYILEGIYFYSGFMFFYNLARNGKMPGSAQEIRYINRDENTHLWLFKNIILELKK 236
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
E P ++T+E ML E EI + + GL Y+ ++ N R +
Sbjct: 237 ERPDMFTEEKVASYAEMLKEGVRQEIEWGEYVIGDDIPGLTRKMVRDYITYLGNLRWTNL 296
Query: 308 GLEPLFKY-TENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
PL+ P W+S + + +FFE R T Y + L D
Sbjct: 297 DFPPLYPGFDTEPEDMAWVSAYSNANMVKTDFFEARSTAYAKSTALVDD 345
>gi|11544907|emb|CAC17632.1| class I ribonucleotide-diphosphate reductase small chain
[Streptomyces microflavus]
Length = 321
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 101/326 (30%), Positives = 177/326 (54%), Gaps = 10/326 (3%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ + K +L+ ++ L P++Y +E+Y A N W EV + D+A L+
Sbjct: 3 DKNQKNLLDPGFEL-TLRPMRYPDFYERYRDAIKNTWTVEEVDLHSDVAD---LAKLSPG 58
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+ MI R + FFA+ +S+VANN+VL +Y+H+++PE R YL RQ FEEAVH + ++ +
Sbjct: 59 EQHMIGRLVAFFATGDSIVANNLVLTLYKHINSPEARLYLSRQLFEEAVHVQFYLTLLDT 118
Query: 138 LGLDEGELFNMY---REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
D E + +PSI KA + ++ ++ T+ + FL +L F
Sbjct: 119 YLPDPAERAAAFAAVENIPSIRDKAQFCFKWMDSVEKID-QLETRADRRRFLLNLICFAA 177
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
EG++FY FA + + G+A ++ RDE++H+NF +V++ ++ E P L+
Sbjct: 178 CIEGLFFYGAFAYVYWFRSRGLLHGLATGTNWVFRDETMHMNFAFEVVDTVRKEEPELFD 237
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
Q++ ML EA E+ + + +G G+N S +Y+Q +A++R ++G P++
Sbjct: 238 DALQEQVTAMLKEAVEAELQFGRDLCGEGLPGMNTESMREYLQCVADQRLTRLGFAPVYG 297
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRV 340
+ENPF +M E+ +++ NFFE R
Sbjct: 298 -SENPFAFM-ELQGVQELTNFFERRP 321
>gi|257067181|ref|YP_003153437.1| ribonucleotide-diphosphate reductase subunit beta [Anaerococcus
prevotii DSM 20548]
gi|256799061|gb|ACV29716.1| Ribonucleoside-diphosphate reductase [Anaerococcus prevotii DSM
20548]
Length = 352
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 93/356 (26%), Positives = 165/356 (46%), Gaps = 15/356 (4%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
I + +++ +R++ + ++N LKY W + Y A NN W+P E+
Sbjct: 6 KKEVNKRGIFNEDGDIDLSKRRIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEIN 65
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ D+ ++ L E+ R L F +S+ N+ + +++ E L Q
Sbjct: 66 LNQDIKDYR---KLDKHEKKAFDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLSIQ 121
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
++E++HS ++ YI+ ++ E R K + L + ++
Sbjct: 122 TYQESIHSQSYSYILDTICSPEE------RTRILYLWKEDEHLLKRNEFIGDQYNEFLEN 175
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+ + + + EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL
Sbjct: 176 DDEFRFMKVLIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRS 235
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+IN +K E L+ E Q R ML E EIA+ ++ GLN E Y++++
Sbjct: 236 LINDLKKEREDLFVPELQNYYREMLKEGVEQEIAWGKYSIGNSIAGLNEKMIEDYIKYLG 295
Query: 301 NRRCHQIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N R +GLEPL++ Y E P W+ E D + +FFE +VT Y + + ++ D
Sbjct: 296 NLRAKGLGLEPLYEGYKEIPESMKWVDEYSDPNGVKTDFFEAKVTAYSKSSIIEDD 351
>gi|193784694|dbj|BAG53847.1| unnamed protein product [Homo sapiens]
gi|193787382|dbj|BAG52588.1| unnamed protein product [Homo sapiens]
Length = 297
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 87/309 (28%), Positives = 143/309 (46%), Gaps = 28/309 (9%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y A + W EV + D+ W+S L +ER I L FFA+S+ +V N+V
Sbjct: 1 MYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERF 57
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
+ + E R + Q E +HS + +I + D E LFN +P + KA+W
Sbjct: 58 SQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADW 117
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
AL++ + + V + EG++F FA I L + M G+
Sbjct: 118 ALRWIG-------------DKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLT 164
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ I RDE LH +F + + K +++ R ++ A +E + E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFKHLV-------HKPSEERVREIIINAVRIEQEFLTEALP 217
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
+G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV
Sbjct: 218 VKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV-ENPFDFM-ENISLEGKTNFFEKRVG 275
Query: 342 EYQQGAELK 350
EYQ+ +
Sbjct: 276 EYQRMGVMS 284
>gi|223983469|ref|ZP_03633655.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM
12042]
gi|223964641|gb|EEF68967.1| hypothetical protein HOLDEFILI_00935 [Holdemania filiformis DSM
12042]
Length = 348
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 93/357 (26%), Positives = 157/357 (43%), Gaps = 15/357 (4%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M+ + + + +V +RM+N + ++N LKYGW + Y A NN W+P E+
Sbjct: 1 MSESLKRKALFNAQGDTDVRRRRMINGNTTNLNDFNTLKYGWVSDWYRQAMNNFWIPEEI 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ DL + L + + + L F +S+ N+ I ++ E L
Sbjct: 61 NLGQDLKDY---PKLEPAVKTALDKTLSFLIFLDSIQTANLP-NIGEVITANEINLCLTI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
QAF+EAVHS ++ Y++ S + R K + L + +
Sbjct: 117 QAFQEAVHSQSYSYMLDSFCSPD------QRTEILYQWKEDPRLLKRNEFIGGLYNEFIE 170
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
L + + EG++FY+GF +LGR M G ++ +YI RDE+ HL
Sbjct: 171 QRTPVQLMKTLIANYILEGIYFYSGFMFFYNLGRMGLMPGSVQEIRYINRDENTHLWLFR 230
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+I +++ E P L+T E +Q R ML + EI + + GLN Y++++
Sbjct: 231 SMILELRKEEPQLFTPEREQLYREMLKQGVEEEIEWGCAILGDEIPGLNKTMIRDYIRYL 290
Query: 300 ANRRCHQIGLEPLFKYTEN---PFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N R I LE L+ E W+S+ + + +FFE R + Y + + LK D
Sbjct: 291 GNLRAKAIHLEILYPGEEEEPASMKWVSQYANANLIKTDFFEARSSAYAKASALKDD 347
>gi|313900116|ref|ZP_07833616.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
HGF2]
gi|312955168|gb|EFR36836.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium sp.
HGF2]
Length = 347
Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats.
Identities = 87/351 (24%), Positives = 153/351 (43%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
P+ V +RM+N + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 6 RKPLFNEHGDCEVGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV 65
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ L + E+ + L F +S+ N+ + +++ E L QAF+EA
Sbjct: 66 KDYR---RLREAEKTAYDKTLSFLIFLDSIQTANLP-NVGEYITANEVNLCLTIQAFQEA 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ S+ R K + L + D
Sbjct: 122 VHSQSYSYMLDSICSP------QERTDILYQWKDDERLLNRNKFIGDLYNDFQTHRDGRH 175
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I ++
Sbjct: 176 LMKTMMANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILEL 235
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P L+T+E ++ + ML EI + + GL Y+ ++ N R +
Sbjct: 236 QKEEPQLFTEELIEEYKDMLRHGVEEEIRWGEYVIGNHIEGLTMEMVSDYIHYLGNLRSN 295
Query: 306 QIGLEPLFKYTEN---PFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G L+ EN W+S + + +FFE R + Y + + L D
Sbjct: 296 SLGFGSLYDGFENEPKSMEWVSMYANANLIKTDFFEARSSAYAKSSALVDD 346
>gi|167627842|ref|YP_001678342.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597843|gb|ABZ87841.1| Ribonucleoside-diphosphate reductase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
Length = 410
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 81/322 (25%), Positives = 141/322 (43%), Gaps = 17/322 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S
Sbjct: 99 TYKPFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V N N E R L A E +H + + +LGL + E ++ + E
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
++T K ++ + + L V EG+ + FA +L+
Sbjct: 217 KAMTDKIDFMMD-------------ANPNTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R KM G+ + ++ +RDES+H+ + ENP++ +F+++ M +A LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELE 323
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
+ G GL A ++Y++ I +RR +Q+GL ++ +NP W+ +++
Sbjct: 324 DKFIDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIYNIDKNPLTWLEWILNGAD 383
Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
NFFE RVTEY+ WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGNWD 405
>gi|332247270|ref|XP_003272776.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 2 [Nomascus leucogenys]
gi|332247272|ref|XP_003272777.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
isoform 3 [Nomascus leucogenys]
Length = 297
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 87/309 (28%), Positives = 143/309 (46%), Gaps = 28/309 (9%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y A + W EV + D+ W+S L +ER I L FFA+S+ +V N+V
Sbjct: 1 MYKKAEASFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERF 57
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
+ + E R + Q E +HS + +I + D E LFN +P + KA+W
Sbjct: 58 SQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADW 117
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
AL++ + + V + EG++F FA I L + M G+
Sbjct: 118 ALRWIG-------------DKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLT 164
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ I RDE LH +F + + K +++ R ++ A +E + E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFKHLV-------HKPSEERVREIIINAVRIEQEFLTEALP 217
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
+G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV
Sbjct: 218 VKLIGMNCILMKQYIEFVADRLMLELGFGKVFRV-ENPFDFM-ENISLEGKTNFFEKRVG 275
Query: 342 EYQQGAELK 350
EYQ+ +
Sbjct: 276 EYQRMGVMS 284
>gi|319936387|ref|ZP_08010803.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus
sp. 29_1]
gi|319808502|gb|EFW05054.1| ribonucleotide-diphosphate reductase subunit beta [Coprobacillus
sp. 29_1]
Length = 346
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 87/351 (24%), Positives = 157/351 (44%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
+ ++V +RM+N + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 5 RKALFNASGDIDVRKRRMINGNTTNLNDFNNMKYNWVSDWYRQAMNNFWIPEEINLTQDI 64
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ L + E+ + L F +SL N+ + +++ E L QAF+EA
Sbjct: 65 KDYR---LLNEHEKTAYDKILSFLVFLDSLQTANLP-NVGEYITANEINLCLTIQAFQEA 120
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ S+ + R+ K + L + + D
Sbjct: 121 VHSQSYSYMLDSICSP------IERDEILYQWKYDEHLLKRNEFIGEQYNAFLEHKDSFH 174
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ + EG++FY+GF +LGR KM G A++ +YI RDE+ HL ++I ++
Sbjct: 175 FMKTVIANYILEGIYFYSGFMFFYNLGRMGKMPGSAQEIRYINRDENTHLWLFRNMILEL 234
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P L+T + + R M+ EIA+ + GL Y+ ++ N R
Sbjct: 235 QKEEPDLFTPDKIEVYRDMMKRGVEEEIAWGQYVLGDRIEGLTMKMVSDYIHYLGNFRAQ 294
Query: 306 QIGLEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+ EPLF+ W+S + + +FFE R + Y + + L+ D
Sbjct: 295 ALNFEPLFEDYMQEPESMKWVSIYSNANDIKTDFFEARSSAYAKSSALEDD 345
>gi|260912588|ref|ZP_05919119.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
str. F0295]
gi|260633300|gb|EEX51459.1| ribonucleoside-diphosphate reductase [Prevotella sp. oral taxon 472
str. F0295]
Length = 348
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 88/357 (24%), Positives = 159/357 (44%), Gaps = 15/357 (4%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M N + + + ++ +RM+ + ++N ++Y WA + Y A NN W+P E+
Sbjct: 1 MDNKLKKNALFNPQGDTDLRQRRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEI 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D + L ER + L F +SL + N+ ++ ++ E L
Sbjct: 61 NLTQDTKDY---PLLPPAERKAYDKILSFLVFLDSLQSANLP-SLTEFITANEVNLCLHI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
QAF+E VHS ++ Y++ ++ E R K + L T +
Sbjct: 117 QAFQECVHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFYA 170
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL
Sbjct: 171 NNDKASLMKTLIANYILEGIYFYSGFMFFYNLARNGKMSGSAQEIRYINRDENTHLWLFR 230
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
++I+++K E P +T E + M+ E EIA+ + GLN Y++++
Sbjct: 231 NIIHEMKKEEPEYFTPEKVKLYEEMMREGVRQEIAWGQYVIGDEVQGLNGQMVNDYIRYL 290
Query: 300 ANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N R +G LF+ W+S+ + + +FFE + T Y + ++ D
Sbjct: 291 GNMRWRSLGFGNLFEDNIEEPENMRWVSQYANANMVKTDFFEAKSTAYAKSTAIEDD 347
>gi|241668401|ref|ZP_04755979.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876934|ref|ZP_05249644.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254842955|gb|EET21369.1| glutaredoxin 3/ribonucleotide reductase beta subunit [Francisella
philomiragia subsp. philomiragia ATCC 25015]
Length = 410
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 81/322 (25%), Positives = 141/322 (43%), Gaps = 17/322 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P Y WA + + HW+ E+ + +D+ WK+ +T E+ I L F S
Sbjct: 99 TYKPFSYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKN-GKITKVEKEYITNILRLFTQS 157
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V N N E R L A E +H + + +LGL + E ++ + E
Sbjct: 158 DVAVGQNYYDQFIPLFKNNEVRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEY 216
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
++T K ++ + + L V EG+ + FA +L+
Sbjct: 217 KAMTDKIDFMMD-------------ANPNTRRGLGLCLAKTVFNEGVALFASFAMLLNFQ 263
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R KM G+ + ++ +RDES+H+ + ENP++ +F+++ M +A LE
Sbjct: 264 RFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNQFKKEIYLMASKAVELE 323
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
+ G GL A ++Y++ I +RR +Q+GL ++ +NP W+ +++
Sbjct: 324 DKFIDLAYEIGTIEGLKADEVKEYIRHITDRRLNQLGLNEIYNIDKNPLTWLEWILNGAD 383
Query: 332 EKNFFETRVTEYQQGA-ELKWD 352
NFFE RVTEY+ WD
Sbjct: 384 HTNFFENRVTEYEVAGLTGNWD 405
>gi|320527966|ref|ZP_08029132.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium
moorei F0204]
gi|320131592|gb|EFW24156.1| ribonucleoside-diphosphate reductase, beta subunit [Solobacterium
moorei F0204]
Length = 349
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 89/356 (25%), Positives = 164/356 (46%), Gaps = 15/356 (4%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ P+ E ++V ++R++N + ++N +KY W + Y A NN W+P E+
Sbjct: 3 TDQINRKPLFNPEGDIDVRNRRLINFNTTNINDFNNMKYNWVSDWYRQAMNNFWVPEEIN 62
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ D + + L+ E+ + L F +SL + N+ I ++++ E L Q
Sbjct: 63 LNQDKSDY---PRLSLAEKTAYDKILSFLVYLDSLQSANLP-NISQYITANEVNLCLSIQ 118
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
F+E +HS ++ Y++ S+ E R K + L +
Sbjct: 119 TFQECIHSQSYSYMLDSICSPE------QRNDILYQWKTDEHLLKRNEFIGELYNEFVAK 172
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D++ + + + EG++FY+GF +L R KM G ++ +YI RDES HL +
Sbjct: 173 QDKQSFLRVCIANFILEGVYFYSGFMFFYNLARNGKMPGSVQEIRYINRDESTHLWLFRN 232
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
++ +++ E P L+T E Q R M++ EIA+ H + GLN Y++++
Sbjct: 233 ILVELQKEEPELFTPENIQMIREMMNTGVEQEIAWGHYVIGDEIPGLNKQMVTDYIKYLG 292
Query: 301 NRRCHQIGLEPLF-KYTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N R +G L+ +Y E P W+ + D + +FFE R + Y + ++ D
Sbjct: 293 NTRFATLGFGNLYEEYAEEPESMKWVKQYSDANMVKTDFFEARPSAYAKSGAIEDD 348
>gi|323343338|ref|ZP_08083565.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
oralis ATCC 33269]
gi|323095157|gb|EFZ37731.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
oralis ATCC 33269]
Length = 349
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 90/351 (25%), Positives = 156/351 (44%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
+ + E ++ +RM+ + ++N ++Y WA + Y A NN W+P E+ + D
Sbjct: 8 RNALFNPEGDTDLRLRRMIGGNTTNLNDFNNMRYPWASDWYRQAMNNFWIPEEINLAQDT 67
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ L ER + L F +SL +NN+ I +++ E L QAF+E
Sbjct: 68 KDY---PRLDKAERAAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQEC 123
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ ++ E R K + L T + D+
Sbjct: 124 VHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFHDKRDKFS 177
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY+GF +L R KM G A++ +YI RDE+ HL +++ ++
Sbjct: 178 LMKTCVANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNILQEL 237
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E P ++T E + M+ E EIA+ + GLN Y+ ++ N R H
Sbjct: 238 KKEEPKMFTPEKVKVYEEMMREGVRQEIAWGQYVIGDEVPGLNTKMVSDYIHYLGNLRWH 297
Query: 306 QIGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G L+ W+S+ + + +FFE + T Y + L+ D
Sbjct: 298 SLGFGYLYDENIQEPENMKWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348
>gi|153875510|ref|ZP_02003277.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp.
PS]
gi|152068026|gb|EDN66723.1| ribonucleotide-diphosphate reductase beta subunit [Beggiatoa sp.
PS]
Length = 374
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 141/354 (39%), Positives = 218/354 (61%), Gaps = 8/354 (2%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
++ L I G KR + D +++ R DV Q +P+KY E++L+A N W+P E+PM
Sbjct: 24 SSSLDAISIGTKRPSSSDIKIIGGRGYDVRQPIPVKYTSVRERFLNARKNFWIPNEIPMG 83
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
+D W + LT+ E + K N+ + +S++LV +N+ AI +H++ E RQY Q
Sbjct: 84 EDKLQWNT-GLLTEAEMWLFKSNISYLTASDNLVPDNLDNAILKHITANEMRQYFRHQIM 142
Query: 123 EEAVHSHTFQYIITSLGLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
EE+ H ++ +I+ S GLDE ++FN+Y+EVP++T K NW L +T + + GT
Sbjct: 143 EESNHIESYLFILESFGLDEKGQGQIFNLYQEVPALTEKLNWNLTFTNNVVNSEAPRGTL 202
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+A++ L+DL +Y+ FE ++F GF+QI +L R K+ A+QY YI RDE+LH + G+
Sbjct: 203 EANRALLEDLISYYI-FEYLFFPLGFSQIFALARKGKLRNTAQQYSYIWRDENLHSSNGL 261
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQF 298
+I QI EN LW Q++SR ++ EA LE YAH +MP+ G VGL + ++ F
Sbjct: 262 WLIKQIIQENHELWDSTMQERSRAIVSEAVKLETDYAHASMPEGGIVGLPVKTYIKFSHF 321
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+A+ C +G++PLF+ E+P PW+SE +L E NFFE RV EYQ G++L WD
Sbjct: 322 VADNICKNLGIKPLFRVREHPMPWISEY-ELNHEVNFFEGRVREYQTGSQLTWD 374
>gi|50949848|emb|CAH10473.1| hypothetical protein [Homo sapiens]
Length = 297
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 91/308 (29%), Positives = 147/308 (47%), Gaps = 28/308 (9%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V
Sbjct: 1 MYKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERF 57
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
+ + PE R + Q E VHS + +I + D + LFN +P + KA+W
Sbjct: 58 SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
AL++ + + V + EG++F FA I L + M G+
Sbjct: 118 ALRWIA-------------DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLT 164
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ I RDE LH +F + + + P +++ R ++ +A +E + E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFQYLVNKPP-------EERVREIIVDAVKIEQEFLTEALP 217
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
G +G+N +QY++F+A+R ++G +F ENPF +M E I L+ + NFFE RV+
Sbjct: 218 VGLIGMNCILMKQYIEFVADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVS 275
Query: 342 EYQQGAEL 349
EYQ+ A +
Sbjct: 276 EYQRFAVM 283
>gi|227485717|ref|ZP_03916033.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus
ATCC 51172]
gi|227236272|gb|EEI86287.1| ribonucleoside-diphosphate reductase [Anaerococcus lactolyticus
ATCC 51172]
Length = 352
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
I +++ ++++ + ++N LKY W + Y A NN W+P E+ + D+ +
Sbjct: 14 IFNENGDIDLAKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ L E+ R L F +S+ N+ + +++ E L Q ++E++HS
Sbjct: 74 R---KLDQHEKRAFDRILSFLTYLDSIQTANLP-NLQTYVTANEINLCLSIQTYQESIHS 129
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ YI+ ++ E R K + L + D ++
Sbjct: 130 QSYSYILDTICSPEE------RTRILYLWKEDDHLLRRNEFIGEQYNEFLVDDNEFKFVR 183
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL +IN +K E
Sbjct: 184 ALIANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKE 243
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+T E R ML E EI + + GL+ E Y++++ N R +G
Sbjct: 244 RPDLFTPEATIVYRDMLKEGVRQEIEWGKYAIGDNIAGLSTTMIEDYIKYLGNLRAKGLG 303
Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+PLF+ YTE P W+ E D + + +FFE +VT Y + + ++ D
Sbjct: 304 FDPLFEGYTEIPQSMKWVDEYSDPNRVKTDFFEAKVTAYSKSSIIEDD 351
>gi|309775830|ref|ZP_07670824.1| ribonucleoside-diphosphate reductase, beta subunit
[Erysipelotrichaceae bacterium 3_1_53]
gi|308916368|gb|EFP62114.1| ribonucleoside-diphosphate reductase, beta subunit
[Erysipelotrichaceae bacterium 3_1_53]
Length = 347
Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats.
Identities = 87/351 (24%), Positives = 154/351 (43%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
P+ V +RM+N + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 6 RKPLFNEHGDCEVGKRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV 65
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ L + E+ + L F +S+ N+ + +++ E L QAF+EA
Sbjct: 66 KDYR---RLHEAEKTAYDKTLSFLIFLDSIQTANLP-NVGEYVTANEVNLCLTIQAFQEA 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ S+ R K + L + + D
Sbjct: 122 VHSQSYSYMLDSICSP------QERNDILYQWKDDERLLNRNKFIGDLYNDFQEHKDGLH 175
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I ++
Sbjct: 176 LMKTMMANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILEL 235
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E PHL+T+E Q+ + ML EI + + GL Y+ ++ N R +
Sbjct: 236 QKEEPHLFTEELIQEYKDMLRHGVEEEIRWGEYVIGNNIEGLTMEMVSDYIHYLGNLRSN 295
Query: 306 QIGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G L++ W+S + + +FFE R + Y + + L D
Sbjct: 296 SLGFGSLYEGFESEPKSMEWVSMYANANLIKTDFFEARSSAYAKSSALVDD 346
>gi|293401949|ref|ZP_06646089.1| ribonucleoside-diphosphate reductase, beta subunit
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304607|gb|EFE45856.1| ribonucleoside-diphosphate reductase, beta subunit
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 347
Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats.
Identities = 85/351 (24%), Positives = 155/351 (44%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
P+ +V ++RM+N + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 6 RKPLFNEHGDCDVINRRMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLNQDV 65
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ L+ E+ + L F +S+ N+ + +++ E L QAF+EA
Sbjct: 66 KDYR---RLSQAEKNAYDKTLSFLIFLDSIQTANLP-NVGDYITANEVNLCLTIQAFQEA 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+HS ++ Y++ S+ R K + L + D
Sbjct: 122 LHSQSYSYMLDSICSS------QERNDILYQWKNDARLLERNKFIGDLYNDFITHHDGIH 175
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I ++
Sbjct: 176 LMKTMMANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSMILEL 235
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P L+T ++ + ML EI + + GL +Y+ ++ N R
Sbjct: 236 QKEEPQLFTPALVEEYKDMLRYGVEEEIRWGSYVIGNDIEGLTMQMVREYIYYLGNLRST 295
Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G L++ Y + P W+S + + +FFE R + Y + + L D
Sbjct: 296 SLGFGTLYEGYEKEPASMEWVSMYANANLIKTDFFEARSSAYAKSSALVDD 346
>gi|260591988|ref|ZP_05857446.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
veroralis F0319]
gi|260536272|gb|EEX18889.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
veroralis F0319]
Length = 348
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 88/357 (24%), Positives = 158/357 (44%), Gaps = 15/357 (4%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M + + + V++ +RM+ + ++N +KY W + Y A NN W+P E+
Sbjct: 1 MEDKLKRNTLFNPSGDVDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D + L ER + L F +SL +NN+ + +++ E L
Sbjct: 61 NLSQDFKDY---PRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
QAF+E +HS ++ Y++ ++ E R K + L + +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+I ++K E P ++T+E + M+ E EIA+ + GLN+ Y++++
Sbjct: 231 SIILELKKEEPDMFTEEKVKVYEDMMREGVRQEIAWGQYVIGNDVQGLNSQMVSDYIRYL 290
Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N R +G L+ + P W+ + + + +FFE R T Y + L D
Sbjct: 291 GNLRWSGLGFGFLYPDNQKEPENMKWVGQYSNANMVKTDFFEARSTAYAKSTALIDD 347
>gi|67585619|ref|XP_665115.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis TU502]
gi|54655552|gb|EAL34885.1| ribonucleotide reductase R2 subunit [Cryptosporidium hominis]
Length = 296
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 84/308 (27%), Positives = 140/308 (45%), Gaps = 29/308 (9%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y A + W+ E+ + D W+S L D ER IK L FFA+S+ +V N+ +
Sbjct: 1 MYKKAEASFWVTEEIDLSQDTRDWES---LKDPERHFIKYVLAFFAASDGIVMENLAVNF 57
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
R + PE R Y Q E +HS T+ +I D E LF + ++ KA W
Sbjct: 58 LREIQIPEARMYYAFQMSIEQIHSETYSLLIDRYITDIKERQMLFEAISHIEAVKKKAEW 117
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
A ++ + S + + + EG+ F F I L + M G+
Sbjct: 118 ATKWMNSERS--------------FAERIIGFCAVEGILFSGSFCAIFWLKKRGLMPGLT 163
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ I RDE LH +F + +K + P + + ++ EA +E + +++P
Sbjct: 164 FSNELISRDEGLHADFACLIYKALKFKLPAP-------RVQQIISEAVEVERNFLCDSLP 216
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
+G+N+ QY++F+A+R + + ++ + NPF WM +I L+ + NFFE RV
Sbjct: 217 VDLIGMNSRLMAQYIEFVADRLLFALDIPKIYNVS-NPFDWMD-LISLQGKTNFFEKRVG 274
Query: 342 EYQQGAEL 349
EYQ +
Sbjct: 275 EYQMAGVM 282
>gi|148273612|ref|YP_001223173.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|170782700|ref|YP_001711034.1| ribonucleotide-diphosphate reductase subunit beta [Clavibacter
michiganensis subsp. sepedonicus]
gi|147831542|emb|CAN02508.1| putative ribonucleoside-diphosphate reductase beta subunit
[Clavibacter michiganensis subsp. michiganensis NCPPB
382]
gi|169157270|emb|CAQ02455.1| ribonucleoside-diphosphate reductase beta subunit [Clavibacter
michiganensis subsp. sepedonicus]
Length = 331
Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats.
Identities = 103/310 (33%), Positives = 179/310 (57%), Gaps = 4/310 (1%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+ Y WA + Y A N W P E+ + +D+A +K +TD+ER I + +F +E
Sbjct: 15 LKPVNYQWAMDLYDQAVANTWFPNEIQLGEDIADFK---KMTDEERHAITFLMSYFNPNE 71
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
LV + +Y +++ PEC YL +Q +EEA H +F+Y++ + +D +N + ++P
Sbjct: 72 LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREAAYNSHVDIP 131
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
S+ K + +++ + ++ + T + ++F+++L + V+ EG+WFY+GF LS +
Sbjct: 132 SMARKEEFEVKFIKRMTEQTLDITTTEGKKDFVRNLVAYNVILEGIWFYSGFMVSLSFRQ 191
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
N + +I+RDESLHL FGI++I + ENP L T+EF + + M+ +A +E
Sbjct: 192 RNLLRNFGSLMDWIVRDESLHLKFGINLILTVLEENPDLQTEEFAAEIKQMILDAVEMEE 251
Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
Y + +P G +GLNA QY++++A+RR ++G E +K + NP WM+ D +
Sbjct: 252 QYNRDLLPNGILGLNANYINQYVKYLADRRLEELGFEAEYKVS-NPAKWMATANDTLQLV 310
Query: 334 NFFETRVTEY 343
NFFE+ T Y
Sbjct: 311 NFFESTNTSY 320
>gi|225568010|ref|ZP_03777035.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM
15053]
gi|225163184|gb|EEG75803.1| hypothetical protein CLOHYLEM_04083 [Clostridium hylemonae DSM
15053]
Length = 355
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 86/348 (24%), Positives = 155/348 (44%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ + +V +RM+ + ++N +KY W + Y A NN W+P E+ + D+ +
Sbjct: 17 LFNPDGDTDVRSRRMIGGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEISLGVDIKDY 76
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
L +ER + L F +S+ N+ I +++ E L Q F+EAVHS
Sbjct: 77 ---PRLPAEERRAYDKILSFLIFLDSIQTANLP-HIGEYITANEINLCLSIQTFQEAVHS 132
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ Y++ ++ + RE K + L + + L
Sbjct: 133 QSYSYMLDTICEPQK------REEILYQWKEDEHLLLRNEFIGSLYNEFQETKSARSLVR 186
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++ ++K E
Sbjct: 187 TLIANYILEGVYFYSGFMFFYNLGRNQKMPGSVQEIRYINRDENTHLWLFRSMLQELKKE 246
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+ E + R M+ E EI + H + GL Y++++ N RC +G
Sbjct: 247 EPQLFAAEDIKMYRQMIREGCEQEIRWGHYVIGDKIQGLTKDMITSYIRYLGNLRCTGLG 306
Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
E +++ Y P W+ + + + +FFE + T Y + + L D
Sbjct: 307 FERIYEGYDTIPESMRWVEQYSNANLIKTDFFEAKSTAYAKSSALVDD 354
>gi|312599293|gb|ADQ91316.1| hypothetical protein BpV2_149c [Bathycoccus sp. RCC1105 virus BpV2]
Length = 387
Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats.
Identities = 88/337 (26%), Positives = 153/337 (45%), Gaps = 33/337 (9%)
Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
ML + P+K+ W Y A ++W E+ D+ W NGL+D+E+ I
Sbjct: 74 PMLLPTLSRFTVFPIKHENLWSLYKKAQMSNWTAEEIDFSKDMDDW---NGLSDNEKHFI 130
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
K L FFA S+ +V NI + E R + QA E VH T+ +I
Sbjct: 131 KYILAFFAGSDGIVFENINNNFADEIQLTEARSFYAYQAHNEMVHGETYSKLIDKYIKSS 190
Query: 143 GE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
E LF + +P I KA WA+++ D + F + L + EG+
Sbjct: 191 TEKNQLFEAIQTIPCIERKAKWAMKW-------------FDKKRPFAERLLA-FACVEGI 236
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
+F F I L + + G+ + I RDE +H F +++ N +K + +
Sbjct: 237 FFSGSFCAIYWLKKRGLLPGLCFSNELISRDEGMHQEFAVELFNMLKNKPSG-------E 289
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
++ +A +E + + +P +G+N+ +Y++++A+R Q+G + ++ T+NP
Sbjct: 290 IIEEIIRDAVTIEKEFITDALPCSLIGMNSSKMSEYIEYVADRLSKQVGHDKIWN-TKNP 348
Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQG----AELKWD 352
F +M E I L + NFFE RV +Y + +++D
Sbjct: 349 FDFM-ENISLDGKTNFFEKRVGDYGKMDEDTTSIEFD 384
>gi|148676854|gb|EDL08801.1| ribonucleotide reductase M2 B (TP53 inducible) [Mus musculus]
Length = 297
Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats.
Identities = 90/308 (29%), Positives = 145/308 (47%), Gaps = 28/308 (9%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V
Sbjct: 1 MYKQAQASFWTAEEVDLSKDLPHW---NKLKSDEKYFISHILAFFAASDGIVNENLVERF 57
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
+ + PE R + Q E VHS + +I + D + LFN +P + KA+W
Sbjct: 58 SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
AL++ + + V + EG++F FA I L + M G+
Sbjct: 118 ALRWIA-------------DRKSTFGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLT 164
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ I RDE LH +F + + + + + R ++ +A +E + E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFQYLVNK-------PSEDRVREIIADAVQIEQEFLTEALP 217
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
G +G+N +QY++F+A+R ++G +F ENPF +M E I L+ + NFFE RV+
Sbjct: 218 VGLIGMNCVLMKQYIEFVADRLLGELGFSKIF-QAENPFDFM-ENISLEGKTNFFEKRVS 275
Query: 342 EYQQGAEL 349
EYQ+ A +
Sbjct: 276 EYQRFAVM 283
>gi|282860353|ref|ZP_06269421.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
bivia JCVIHMP010]
gi|282586851|gb|EFB92088.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
bivia JCVIHMP010]
Length = 347
Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats.
Identities = 87/351 (24%), Positives = 156/351 (44%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
+ + + ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D+
Sbjct: 6 RNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINLAQDI 65
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ L ER + L F +SL +NN+ I +++ E L Q F+E
Sbjct: 66 KDY---PNLPPAERKAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQEC 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ S+ E R K + L T + ++
Sbjct: 122 VHSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQAHRNKFC 175
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++
Sbjct: 176 LMKACIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNMIIEL 235
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E P L+T E M+ E EIA+ + GL Y++++ N R
Sbjct: 236 KQEEPELFTPEKVAIYEAMMREGVAQEIAWGQYVIGNEVQGLTQQMVSDYIRYLGNLRWK 295
Query: 306 QIGLEPLFKYTE-NP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G + LF+ + P W+++ + + +FFE + T Y + L D
Sbjct: 296 SLGFDYLFEDNQTEPTDMEWVAQYSNANMVKTDFFEAKSTAYAKSTALIDD 346
>gi|296271635|ref|YP_003654266.1| ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM
7299]
gi|296095810|gb|ADG91760.1| Ribonucleoside-diphosphate reductase [Arcobacter nitrofigilis DSM
7299]
Length = 339
Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats.
Identities = 95/349 (27%), Positives = 162/349 (46%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I + + ++ D+R+ D + +KY WA + + N W P EV M D
Sbjct: 2 ARKTIYNPDSKESLSDRRIFGGNPDGMINFTKMKYQWALNLWDTMEANTWFPREVQMTGD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+K LT E+ M L +SL NN++ I +++ PE L RQ++EE
Sbjct: 62 AKDYK---YLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITVPEINACLSRQSYEE 118
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A HS ++ ++ S+ + E+++M++ + K N+ LS
Sbjct: 119 ANHSKSYAVMVESISDNTDEIYDMWKNDTQLREKNNYIAAVYDNLSDNITDEK------- 171
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY GFA I +LG++ KM+G ++ ++I RDE HL ++IN
Sbjct: 172 -MVLAMFANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIKFIQRDEVTHLLLFQNMINS 230
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ E P L+T E + K R M +A LE A+ +G QY+Q++A++R
Sbjct: 231 TRKERPDLFTPELEVKVRAMFRKAVELEAAWGAYITQGQILGFTDGIITQYIQYLADKRL 290
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
+G +P + ++P PW+ + NFFE V Y +G+ D
Sbjct: 291 DAVGYKPEYNV-KHPIPWVDGYSSFNDQRTNFFEGNVVNYSKGSIDFDD 338
>gi|328950373|ref|YP_004367708.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis
DSM 14884]
gi|328450697|gb|AEB11598.1| Ribonucleoside-diphosphate reductase [Marinithermus hydrothermalis
DSM 14884]
Length = 332
Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats.
Identities = 114/315 (36%), Positives = 177/315 (56%), Gaps = 4/315 (1%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L PL + WA+ +N W P EVP+ +D+ W LT++ER LGFF E
Sbjct: 18 LFPLAHPWAYAHVQQGKHNTWFPEEVPLGEDVRDWHE--KLTEEERHAASLLLGFFNPME 75
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
SLV N+VLAI+ ++ PE R YL RQ +EEA H+ F+Y++ +L +D ++F +REVP
Sbjct: 76 SLVTQNLVLAIFPYVRAPEARLYLARQIWEEANHTMAFEYVLKTLPVDREKVFAAHREVP 135
Query: 154 SITAKANWALQYTQTL-SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
++ AK + TQ L T+ + L++L ++VV EG++FY GF LS
Sbjct: 136 AVRAKEAFQTALTQALLQQHPLDLETRSGQEALLKNLVGYFVVLEGIFFYAGFLLALSWR 195
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R N + G+ + ++DESLHL+FG+ +I E + T ++ R ++ EA LE
Sbjct: 196 RRNLLKGLGAIIDWTLKDESLHLSFGLHLITGFLEEYSEVMTPRLAREVRGLILEAVQLE 255
Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
AY +P+ +GL+A + Y++++A+RR ++GLE F T NP WM+ +D+ +
Sbjct: 256 RAYNQALLPRPILGLSAETLNAYVEYVADRRLEELGLEAAFG-TPNPAKWMATEVDVPEI 314
Query: 333 KNFFETRVTEYQQGA 347
NFFE T Y+ G
Sbjct: 315 VNFFEAVNTSYEVGN 329
>gi|51891459|ref|YP_074150.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium
thermophilum IAM 14863]
gi|51855148|dbj|BAD39306.1| ribonucleoside-diphosphate reductase beta subunit [Symbiobacterium
thermophilum IAM 14863]
Length = 346
Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats.
Identities = 90/354 (25%), Positives = 160/354 (45%), Gaps = 12/354 (3%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M + + +R++ ++ +L +KY WA + N W+P EV
Sbjct: 1 MERLAERKRLFNEHGERDWGKRRIIGGNPTNIMELTNVKYEWAQKLSDIMLRNFWIPEEV 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
P+ DD + LT DE+ R L F +S++ ++ + +++ PE L
Sbjct: 61 PLLDDAKQY---LELTADEQWAYDRMLSFVIFMDSILTVSMP-NLINYVTAPEINMCLSI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
F EA+HS ++ Y++ S+ E + + + L + +F
Sbjct: 117 HNFHEALHSKSYGYVLESVVPAERRQYIYDLW------REDRQLLERNRYIANTFQLFAD 170
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ E + V EG++FY+GFA +L R KM G A + Q+I RDE H+
Sbjct: 171 NPTDEHFVRACMAQYVLEGIYFYSGFAFFYALARMGKMKGTATEIQFINRDEITHVAVFQ 230
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+++N ++ E P L+T + R M+ +A E+A+A + GL+ + Y++ +
Sbjct: 231 NILNGLRQERPQLFTPQLDADLRAMIRQAAEHEMAWAAYCVGNRIQGLSGEVLQGYVKHL 290
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
A++R +G EPL+ NP W+ +L + +FFETRVT Y + + D
Sbjct: 291 ADQRARALGFEPLYGNHPNPIKWVESFSNLNQTKADFFETRVTNYAKSTNIDLD 344
>gi|227501022|ref|ZP_03931071.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC
35098]
gi|227216795|gb|EEI82193.1| ribonucleoside-diphosphate reductase [Anaerococcus tetradius ATCC
35098]
Length = 352
Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
I + +++ ++++ + ++N LKY W + Y A NN W+P E+ + D+ +
Sbjct: 14 IFNEDGDIDLGKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ L E+ R L F +S+ N+ + +++ E L Q ++E++HS
Sbjct: 74 R---KLDQYEKKAYDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHS 129
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ YI+ ++ E R K + L + ++ D+
Sbjct: 130 QSYSYILDTICSPEE------RTRILYLWKEDEHLLKRNEFIGEQYNEFLENDDEFRFMK 183
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ V + EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL +IN +K E
Sbjct: 184 VLVANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLKKE 243
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
L+ E Q R ML E EIA+ + GLN E Y++++ N R +G
Sbjct: 244 REDLFVPELQNYYRNMLKEGVEQEIAWGKYAIGNEIAGLNEKMIEDYIKYLGNLRAKGLG 303
Query: 309 LEPLFKY-TENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
LE L++ E P W+ E D + +FFE +VT Y + + ++ D
Sbjct: 304 LEALYEGFDEIPESMKWVDEYSDPNGVKTDFFEAKVTAYSKSSIIEDD 351
>gi|50955339|ref|YP_062627.1| ribonucleotide-diphosphate reductase subunit beta [Leifsonia xyli
subsp. xyli str. CTCB07]
gi|50951821|gb|AAT89522.1| ribonucleoside-diphosphate reductase, beta chain [Leifsonia xyli
subsp. xyli str. CTCB07]
Length = 329
Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 102/319 (31%), Positives = 181/319 (56%), Gaps = 7/319 (2%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+KY WA + Y A N W P E+ + +D+A +K +TD+ER + + +F +E
Sbjct: 14 LKPVKYQWAMDLYDQAVANTWFPNEIQIGEDIADFK---KMTDEERHAVTFLMSYFNPNE 70
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
LV + +Y +++ E YL +Q +EEA H +F+Y++ + +D + +N + +VP
Sbjct: 71 LLVNKALAFGVYPYINAAEAHLYLAKQMWEEANHCMSFEYVLETFPIDREQAYNSHVDVP 130
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
S+ +K + +++ + ++ + T + Q+F+++L + V+ EG+WFY+GF LS +
Sbjct: 131 SMASKEEFEVRFIKRMTEQALDITTTEGKQDFIRNLIAYNVILEGIWFYSGFMVALSFRQ 190
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
N + +++RDESLHL FGI++I + ENP L T EF + + M+ +A +E
Sbjct: 191 RNLLRNFGSLIDWVVRDESLHLKFGINLILTVLEENPDLQTPEFAAEIKQMILDAVEMEE 250
Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
Y + +P G +GLNA QY++++A+RR ++G E +K + NP WM+ D +
Sbjct: 251 QYNRDLLPGGILGLNANYINQYVKYLADRRLEELGFEAEYKVS-NPAKWMATANDTLELV 309
Query: 334 NFFETRVTEY---QQGAEL 349
NFFE+ T Y + +
Sbjct: 310 NFFESTNTSYESNAKASSG 328
>gi|315452596|ref|YP_004072866.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis
ATCC 49179]
gi|315131648|emb|CBY82276.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter felis
ATCC 49179]
Length = 347
Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 94/344 (27%), Positives = 167/344 (48%), Gaps = 14/344 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
G I + D+R+ + L +KY WA + + + +N W P EV M D
Sbjct: 10 GRKKIYNPQSAEPAKDRRIFGGNPTGMFDLNQIKYQWAHKIWKTMLHNTWFPEEVSMHGD 69
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ E++ R L +SL NN++ I +++PE L+RQA+EE
Sbjct: 70 KTHY---LKLSTQEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEE 126
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH++ ++ S+ + E++ M+R ++ K + Q L+
Sbjct: 127 ALHSHSYAVMVESISANSDEIYEMWRTDEALKNKNDCVAQVYMDLAHTQTERNL------ 180
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL +I+
Sbjct: 181 --LKALVANQILEGIYFYSGFSFFYALARSGKMLGSAQMIRFIQRDEVTHLALFQSMIHT 238
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+K E P L++K+ ++ M EA LE + + LN + Y++++A+ R
Sbjct: 239 LKKERPDLFSKDLVEEILEMFKEAVDLESTWGRVITQGEILDLNPVTLRAYIEYLADTRL 298
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGA 347
H IGL ++ +T++P W+ + + NFFE RV+ Y +G+
Sbjct: 299 HAIGLPKIY-HTKHPMRWVDQFSSFNSQRSNFFEARVSNYSKGS 341
>gi|114621164|ref|XP_001153859.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
gi|332214017|ref|XP_003256123.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
[Nomascus leucogenys]
gi|332830969|ref|XP_003311933.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B [Pan
troglodytes]
gi|119612248|gb|EAW91842.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_c [Homo
sapiens]
gi|194385642|dbj|BAG65196.1| unnamed protein product [Homo sapiens]
Length = 297
Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats.
Identities = 90/308 (29%), Positives = 146/308 (47%), Gaps = 28/308 (9%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y A + W EV + DL W N L DE+ I L FFA+S+ +V N+V
Sbjct: 1 MYKQAQASFWTAEEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERF 57
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
+ + PE R + Q E VHS + +I + D + LFN +P + KA+W
Sbjct: 58 SQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADW 117
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
AL++ + + V + EG++F FA I L + M G+
Sbjct: 118 ALRWIA-------------DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLT 164
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ I RDE LH +F + + + +++ R ++ +A +E + E +P
Sbjct: 165 FSNELISRDEGLHCDFACLMFQYLVNK-------PSEERVREIIVDAVKIEQEFLTEALP 217
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
G +G+N +QY++F+A+R ++G +F ENPF +M E I L+ + NFFE RV+
Sbjct: 218 VGLIGMNCILMKQYIEFVADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVS 275
Query: 342 EYQQGAEL 349
EYQ+ A +
Sbjct: 276 EYQRFAVM 283
>gi|150005609|ref|YP_001300353.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
vulgatus ATCC 8482]
gi|254884474|ref|ZP_05257184.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
4_3_47FAA]
gi|294778581|ref|ZP_06744003.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides
vulgatus PC510]
gi|319640834|ref|ZP_07995547.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
3_1_40A]
gi|149934033|gb|ABR40731.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides
vulgatus ATCC 8482]
gi|254837267|gb|EET17576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
4_3_47FAA]
gi|294447530|gb|EFG16108.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides
vulgatus PC510]
gi|317387646|gb|EFV68512.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
3_1_40A]
Length = 349
Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats.
Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D +
Sbjct: 11 LFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTKDY 70
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
L ER + L F +SL +NN+ I +++ E L QAF+E VHS
Sbjct: 71 ---PHLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHS 126
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ Y++ S+ E R K + L T + + D L
Sbjct: 127 QSYSYMLDSICSPEK------RNEILYQWKTDGHLLKRNTFIGNCYNEFQESQDGFTLMK 180
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E
Sbjct: 181 TLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKE 240
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+T + + M+ E EI + + GLN E Y+Q++ N R +G
Sbjct: 241 EPDLFTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNRKMIEDYIQYLGNLRWSSLG 300
Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
PL++ + P W+S+ + + +FFE + T Y + L+ D
Sbjct: 301 FGPLYEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348
>gi|288801822|ref|ZP_06407264.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
melaninogenica D18]
gi|302344783|ref|YP_003813136.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
melaninogenica ATCC 25845]
gi|288335864|gb|EFC74297.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
melaninogenica D18]
gi|302149273|gb|ADK95535.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
melaninogenica ATCC 25845]
Length = 348
Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats.
Identities = 87/357 (24%), Positives = 155/357 (43%), Gaps = 15/357 (4%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M N + + + + +RM+ + ++N +KY W + Y A NN W+P E+
Sbjct: 1 MDNQLKRNTLFNPSGDIELRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D + L ER + L F +SL +NN+ + +++ E L
Sbjct: 61 NLSQDFKDY---PRLEKAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
QAF+E +HS ++ Y++ ++ E R K + L + +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+I ++K E P ++T E + M+ E EIA+ + GLNA Y++++
Sbjct: 231 SIILELKKEEPDMFTPEKIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNAQMVSDYIRYL 290
Query: 300 ANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N R +G L+ + W+ + + + +FFE + T Y + L D
Sbjct: 291 GNLRWSGLGFGFLYDDNQKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALIDD 347
>gi|282879357|ref|ZP_06288101.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
buccalis ATCC 35310]
gi|282881358|ref|ZP_06290037.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
timonensis CRIS 5C-B1]
gi|281298554|gb|EFA90979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
buccalis ATCC 35310]
gi|281304764|gb|EFA96845.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
timonensis CRIS 5C-B1]
Length = 347
Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats.
Identities = 90/351 (25%), Positives = 161/351 (45%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
+ + ++ +RM+ + ++N +KY WA + Y A NN W+P E+ + D
Sbjct: 6 RNSLFNPNGDTDLRLRRMIGGNTTNLNDFNNMKYQWASDWYRQAMNNFWIPEEINLTQDT 65
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ L ER + L F +SL +NN+ ++ +++ E L QAF+E
Sbjct: 66 KDY---PRLDKAERTAYDKILSFLVFLDSLQSNNLP-SLCEYITANEVNLCLHIQAFQEC 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ ++ E R K + L T + + D
Sbjct: 122 VHSQSYSYMLDTICSPEQ------RNDILYQWKTDEHLLRRNTFIGNCYNEFHEKQDLYA 175
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++
Sbjct: 176 LMKTCIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIKEL 235
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E P ++T E + M+ E EIA+ + GLNA Y+ ++ N R H
Sbjct: 236 KKEEPEMFTPEKVKVYEEMMREGVRQEIAWGQYVIGNDIQGLNAQMVTDYIHYLGNLRWH 295
Query: 306 QIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G + L++ + P W+++ D + +FFE + T Y + ++ D
Sbjct: 296 SLGFDYLYEDNQKEPEDMKWVAQYSDPNMVKTDFFEAKSTAYAKSTAIEDD 346
>gi|288800286|ref|ZP_06405744.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
oral taxon 299 str. F0039]
gi|288332499|gb|EFC70979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
oral taxon 299 str. F0039]
Length = 347
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
+ + ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D
Sbjct: 6 RNALFNPMGDTDLRLRRMIGGNTTNLNDFNNMRYQWVSDWYRQAMNNFWIPEEINLTQDT 65
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ L ER + L F +SL + N+ ++ +++ E L QAF+E
Sbjct: 66 KDY---PKLDKAERTAYDKILSFLVFLDSLQSTNLP-SLTEYVTANEVNLCLHIQAFQEC 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ ++ E R K + L T + + D+
Sbjct: 122 VHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLKRNTFIGDLYNEFHEKRDRYT 175
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++
Sbjct: 176 LVKTCIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIQEL 235
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E P L+T + M+ E EIA+ + GLNA + Y++++ N R H
Sbjct: 236 KKEEPDLFTPDKVAVYEAMMREGVEQEIAWGQYVIGNDIQGLNAQMVDDYIRYLGNLRWH 295
Query: 306 QIGLEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G + L++ W+S+ + + +FFE + T Y + L+ D
Sbjct: 296 SLGFDYLYEDNRTEPENMRWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 346
>gi|307565004|ref|ZP_07627521.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
amnii CRIS 21A-A]
gi|307346317|gb|EFN91637.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
amnii CRIS 21A-A]
Length = 347
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 88/351 (25%), Positives = 157/351 (44%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
+ + + ++ +RM+ +++N ++Y W + Y A NN W+P E+ + D+
Sbjct: 6 RNALFNPQGDTDLRLRRMIGGNSTNLNDFNNMRYSWVSDWYRQAMNNFWIPEEINLAQDI 65
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ L ER + L F +SL +NN+ I +++ E L Q F+E
Sbjct: 66 KDY---PNLPAAERKAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQEC 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ ++ E R K + L T + + D+
Sbjct: 122 VHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFQANRDKFC 175
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++
Sbjct: 176 LMKACVANFILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIIVEL 235
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E P L+T E M+ E EIA+ + GL Y++++ N R
Sbjct: 236 KQEEPDLFTPEKVAVYEEMMREGVRQEIAWGQYVIGNDVQGLTQQMVYDYIRYLGNLRWK 295
Query: 306 QIGLEPLFKYTE-NP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G + LF+ + P W+++ + + +FFE + T Y + L D
Sbjct: 296 SLGFDYLFEDNQAEPADMQWVAQYSNANMVKTDFFEAKSTAYAKSTALIDD 346
>gi|303237757|ref|ZP_07324316.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
disiens FB035-09AN]
gi|302482043|gb|EFL45079.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
disiens FB035-09AN]
Length = 349
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
+ + + ++ +RM+ + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 8 RNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMKYVWVSDWYRQAMNNFWIPEEINLAQDI 67
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ L ER + L F +SL +NN+ I +++ E L Q F+E
Sbjct: 68 KDY---PNLPQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQTFQEC 123
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+HS ++ Y++ ++ E R K + L T + + D+
Sbjct: 124 IHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLKRNTFIGDCYNEFQEKRDKFA 177
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++
Sbjct: 178 LMKACMANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIVEL 237
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E P L+T E M+ E EIA+ + GL Y+ ++ N R
Sbjct: 238 KQEQPELFTPERIAVYEEMMREGVRQEIAWGQYVIGDKVQGLTQQMVADYIHYLGNLRWR 297
Query: 306 QIGLEPLFKYTEN-P--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G L+++ +N P W+++ + K + +FFE + T Y + L D
Sbjct: 298 SLGFGNLYEHNQNEPDDMQWVAQYSNANKVKTDFFEAKSTAYAKSTALIDD 348
>gi|291165654|gb|EFE27703.1| ribonucleoside-diphosphate reductase, beta subunit [Filifactor
alocis ATCC 35896]
Length = 348
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 90/357 (25%), Positives = 162/357 (45%), Gaps = 15/357 (4%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M + + + +RM+N + ++N +KY W + Y A NN W+P E+
Sbjct: 1 MVEEIKRKQLFNENGDIELSKRRMINGNTTNLNDFNNMKYTWVSDWYRHAMNNFWIPEEI 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D+ ++ L +E+ + L F +SL N+ + ++ E L
Sbjct: 61 NLTQDIKDYR---NLEIEEKEAYDKILSFLIFLDSLQTANLP-NVGEFITANEVNLCLTI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
QA++EA+HS ++ YI+ S+ E R K + L +
Sbjct: 117 QAYQEAIHSQSYGYILDSICSPEE------RTEILYQWKDDPFLLARNKFIGDQYNDFYY 170
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ + L + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL
Sbjct: 171 NRTKYNLVKTVIANYILEGIYFYSGFMFFYALGRNGKMPGTVQEIRYINRDENSHLWLFR 230
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+I ++K E P L+T E + R M+ + EI +A+ + GL E Y++++
Sbjct: 231 SIILELKKEEPELFTPENIEVFRNMIRQGVEEEIKWANYVIGDHIKGLTMQMVEDYLKYL 290
Query: 300 ANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N RC +G EP+++ W+SE D + +FFE +V+ Y + + ++ D
Sbjct: 291 GNLRCRGLGFEPIYEGYQREPESMSWVSEYSDPNAIKTDFFEGKVSAYAKSSVIEDD 347
>gi|212693366|ref|ZP_03301494.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855]
gi|237710423|ref|ZP_04540904.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
9_1_42FAA]
gi|237726931|ref|ZP_04557412.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
D4]
gi|212664010|gb|EEB24584.1| hypothetical protein BACDOR_02879 [Bacteroides dorei DSM 17855]
gi|229433787|gb|EEO43864.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
dorei 5_1_36/D4]
gi|229455145|gb|EEO60866.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides sp.
9_1_42FAA]
Length = 349
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D +
Sbjct: 11 LFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTKDY 70
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
L ER + L F +SL +NN+ I +++ E L QAF+E VHS
Sbjct: 71 ---PHLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHS 126
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ Y++ S+ E R K + L T + + D L
Sbjct: 127 QSYSYMLDSICSPEK------RNEILYQWKTDEHLLKRNTFIGNCYNEFQESQDGFTLMK 180
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E
Sbjct: 181 TLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKE 240
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+T + + M+ E EI + + GLN E Y+Q++ N R +G
Sbjct: 241 EPDLFTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNRKMIEDYIQYLGNLRWSSLG 300
Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
PL++ + P W+S+ + + +FFE + T Y + L+ D
Sbjct: 301 FGPLYEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348
>gi|325478871|gb|EGC81981.1| ribonucleoside-diphosphate reductase, beta subunit [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 352
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 93/348 (26%), Positives = 167/348 (47%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
I + +++ ++++ + ++N LKY W + Y A NN W+P E+ + D+ +
Sbjct: 14 IFNEDGDIDLAKRKIIQGNTTNLNDFNNLKYTWTSDWYRQAMNNFWIPEEINLNQDIKDY 73
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ L + E+ R L F +S+ N+ + +++ E L Q ++E++HS
Sbjct: 74 R---NLDEHEKRAFDRILSFLTYLDSIQTANLP-NLQTYITANEINLCLSIQTYQESIHS 129
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ YI+ ++ E R K + L + K+ D+
Sbjct: 130 QSYSYILDTICSPEE------RTRILYLWKEDEHLLKRNEFIGEQYNEFLKNDDEFRFMK 183
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
V + EG++FY+GF+ +LGR KM G ++ +YI RDE+ HL +IN ++ E
Sbjct: 184 ALVANYILEGIYFYSGFSFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSLINDLRKE 243
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
L+TKE ++ R ML E EIA+ + GL+ E Y++++ N R +G
Sbjct: 244 REDLFTKEHKEYYRNMLKEGVEQEIAWGKYAIGDNIAGLSEKMIEDYIKYLGNLRAKGLG 303
Query: 309 LEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
LE L++ YTE P W+ E D + +FFE +VT Y + + ++ D
Sbjct: 304 LEALYEGYTEIPDSMKWVDEYSDPNAVKTDFFEAKVTAYSKSSIIEDD 351
>gi|28493649|ref|NP_787810.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma
whipplei str. Twist]
gi|28572842|ref|NP_789622.1| ribonucleotide-diphosphate reductase subunit beta [Tropheryma
whipplei TW08/27]
gi|28410975|emb|CAD67360.1| ribonucleotide-diphosphate reductase small chain [Tropheryma
whipplei TW08/27]
gi|28476691|gb|AAO44779.1| ribonucleotide reductase beta chain [Tropheryma whipplei str.
Twist]
Length = 327
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 102/310 (32%), Positives = 176/310 (56%), Gaps = 4/310 (1%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P++Y WA + Y A N W P E+ + +D+A +K +T +E+ + + +F +E
Sbjct: 14 LKPVRYQWAMDLYEQAVANTWFPNEIQLGEDIADFK---KMTHEEKHAVTFLMSYFNPNE 70
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
LV + +Y +++ PEC YL +Q +EEA H +F+Y++ + +D E ++ + EVP
Sbjct: 71 LLVNKALAFGVYPYINAPECHLYLAKQMWEEANHCMSFEYVLETFPIDREEAYSSHIEVP 130
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
S+ K + ++Y + ++ + T + ++F+++L + VV EG+WFY+GF L +
Sbjct: 131 SMARKEEFEVEYIRRMTEETLDITTTEGKRDFIRNLVAYNVVLEGIWFYSGFMAALYFRQ 190
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
N + +I+RDESLHL FGI++I + ENP L T +F + R M+ +E
Sbjct: 191 RNLLRNFGSLIDWIVRDESLHLKFGINLILTVLEENPDLQTSDFADEIRGMIIAGVEMEE 250
Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
Y H+ +P G +GLN+ QY++++A+RR ++G +P + T NP WM+ D +
Sbjct: 251 EYNHDLLPNGILGLNSGYINQYVKYLADRRLEELGFDPEYNVT-NPAKWMATANDTFELV 309
Query: 334 NFFETRVTEY 343
NFFE T Y
Sbjct: 310 NFFEAINTSY 319
>gi|288928561|ref|ZP_06422408.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
oral taxon 317 str. F0108]
gi|288331395|gb|EFC69979.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella sp.
oral taxon 317 str. F0108]
Length = 348
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 90/358 (25%), Positives = 162/358 (45%), Gaps = 17/358 (4%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M N + + + ++ +RM+ + ++N ++Y WA + Y A NN W+P E+
Sbjct: 1 MDNKLKKNALFNPQGDTDLRLRRMIGGNTTNLNDFNNMRYTWASDWYRQAMNNFWIPEEI 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D + L ER + L F +SL + N+ ++ ++ E L
Sbjct: 61 NLTQDTKDY---PLLPPAERKAYDKILSFLVFLDSLQSANLP-SLTEFITANEVNLCLHI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
QAF+E VHS ++ Y++ ++ E R K + L T +
Sbjct: 117 QAFQECVHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLRRNTFIGDCYNEFYA 170
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL
Sbjct: 171 NNDKASLMKTLMANYILEGIYFYSGFMFFYNLARNGKMSGSAQEIRYINRDENTHLWLFR 230
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
++I+++K E P +T E + M+ E EIA+ + GLNA Y++++
Sbjct: 231 NIIHEMKKEEPEYFTPEKVKVYEEMMREGVRQEIAWGQYVIGDEVQGLNAQMVNDYIRYL 290
Query: 300 ANRRCHQIG----LEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N R +G LE + EN W+++ + + +FFE + T Y + ++ D
Sbjct: 291 GNMRWRSLGFGNLLEDNIEEPEN-MRWVAQYANANMVKTDFFEAKSTAYAKSTAIEDD 347
>gi|253567022|ref|ZP_04844473.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
3_2_5]
gi|265764336|ref|ZP_06092904.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
2_1_16]
gi|15290503|gb|AAK92210.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides
fragilis 638R]
gi|251944146|gb|EES84655.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides sp.
3_2_5]
gi|263256944|gb|EEZ28290.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
2_1_16]
gi|301163665|emb|CBW23219.1| putative ribonucleoside-diphosphate reductase beta chain
[Bacteroides fragilis 638R]
Length = 349
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 91/348 (26%), Positives = 157/348 (45%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ E ++M+ + ++N ++Y W + Y A NN W+P E+ + D +
Sbjct: 11 LFNPEGDTETRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTKDY 70
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
LT ER + L F +SL +NN+ + +++ E L QAF+E VHS
Sbjct: 71 ---PHLTPAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAFQECVHS 126
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ Y++ S+ E R K + L T + ++ D L
Sbjct: 127 QSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFALMK 180
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E
Sbjct: 181 TLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKE 240
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+T + + M+ E EIA+ + GLN Y+ F+ N R +G
Sbjct: 241 EPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFLGNLRWSSLG 300
Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
PL++ + P W+S+ + + +FFE + T Y + L+ D
Sbjct: 301 YTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348
>gi|325268390|ref|ZP_08135022.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
multiformis DSM 16608]
gi|324989244|gb|EGC21195.1| ribonucleotide-diphosphate reductase beta subunit [Prevotella
multiformis DSM 16608]
Length = 348
Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 86/357 (24%), Positives = 155/357 (43%), Gaps = 15/357 (4%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M N + + ++ +RM+ + ++N +KY W + Y A NN W+P E+
Sbjct: 1 MDNKLKRNTLFNPSGDTDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D + L ER + L F +SL +NN+ + +++ E L
Sbjct: 61 NLSQDFKDY---PRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
QAF+E +HS ++ Y++ ++ E R K + L + +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+I ++K E P ++T + + M+ E EIA+ + GLN Y++++
Sbjct: 231 SIILELKKEEPDMFTPDRIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290
Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N R +G L+ + P W+ + + + +FFE + T Y + L D
Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALADD 347
>gi|60682187|ref|YP_212331.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
fragilis NCTC 9343]
gi|60493621|emb|CAH08410.1| putative ribonucleoside-diphosphate reductase beta chain
[Bacteroides fragilis NCTC 9343]
Length = 349
Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 91/348 (26%), Positives = 157/348 (45%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ E ++M+ + ++N ++Y W + Y A NN W+P E+ + D +
Sbjct: 11 LFNPEGDTETRFRKMIGGNTTNLNDFNNMRYQWVSDWYRQAMNNFWIPEEINLTQDTKDY 70
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
LT ER + L F +SL +NN+ + +++ E L QAF+E VHS
Sbjct: 71 ---PHLTPAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAFQECVHS 126
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ Y++ S+ E R K + L T + ++ D L
Sbjct: 127 QSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFALMK 180
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E
Sbjct: 181 TLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKE 240
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+T + + M+ E EIA+ + GLN Y+ F+ N R +G
Sbjct: 241 EPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFLGNLRWSSLG 300
Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
PL++ + P W+S+ + + +FFE + T Y + L+ D
Sbjct: 301 YTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348
>gi|331083185|ref|ZP_08332301.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
bacterium 6_1_63FAA]
gi|330404574|gb|EGG84114.1| ribonucleoside-diphosphate reductase subunit beta [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 347
Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 159/350 (45%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ +V +RM+ + ++N ++YGW + Y A NN W+P E+ + D
Sbjct: 7 KPLFNPSGDTDVRFRRMIGGNTTNLNDFNNMRYGWVKDWYRQAMNNFWIPEEINLSQDRK 66
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L ER + L F +S+ + N+ I +++ E L Q F+E V
Sbjct: 67 DY---GELLGKERQAYDKILSFLVFLDSIQSANLP-CIGEYITANEINLCLSIQTFQECV 122
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ E R K + L T + D L
Sbjct: 123 HSQSYSYMLDTICSPEK------RNEILYQWKTDERLLKRNTFIGELYNEFQMKKDSFTL 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I Q+K
Sbjct: 177 LKVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILQLK 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+TKE Q + ML E EIA+ H + G++ +Y++++ N R
Sbjct: 237 EEEPELFTKENIQALKEMLMEGVEQEIAWGHYVLGDDIPGISKEMITEYIKYLGNLRFTG 296
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G + ++ Y + P W+S + + +FFE + T Y + L D
Sbjct: 297 LGFDVVYPGYEKEPESMKWVSYYSNANMVKTDFFEAKSTAYAKSTALLDD 346
>gi|53713986|ref|YP_099978.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
fragilis YCH46]
gi|52216851|dbj|BAD49444.1| ribonucleoside-diphosphate reductase subunit B [Bacteroides
fragilis YCH46]
Length = 349
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 90/348 (25%), Positives = 156/348 (44%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ E ++M+ + ++N ++Y W + Y NN W+P E+ + D +
Sbjct: 11 LFNPEGDTETRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQGMNNFWIPEEINLTQDTKDY 70
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
LT ER + L F +SL +NN+ + +++ E L QAF+E VHS
Sbjct: 71 ---PHLTPAERTAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAFQECVHS 126
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ Y++ S+ E R K + L T + ++ D L
Sbjct: 127 QSYSYMLDSICSPEE------RNDILYQWKTDEHLLRRNTFIGNCYNEFQENRDGFALMK 180
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E
Sbjct: 181 TLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKE 240
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+T + + M+ E EIA+ + GLN Y+ F+ N R +G
Sbjct: 241 EPELFTPDKVKVYEEMMREGVKQEIAWGQYVIGDQIQGLNRQMISDYIHFLGNLRWSSLG 300
Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
PL++ + P W+S+ + + +FFE + T Y + L+ D
Sbjct: 301 YTPLYEDNRKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348
>gi|325859841|ref|ZP_08172971.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
denticola CRIS 18C-A]
gi|325482767|gb|EGC85770.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
denticola CRIS 18C-A]
Length = 348
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 87/357 (24%), Positives = 155/357 (43%), Gaps = 15/357 (4%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M N + + ++ KRM+ + ++N +KY W + Y A NN W+P E+
Sbjct: 1 MDNKLKRNTLFNPSGDTDLRLKRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D + L ER + L F +SL +NN+ + +++ E L
Sbjct: 61 NLSQDFKDY---PRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
QAF+E +HS ++ Y++ ++ E R K + L + +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+I ++K E P ++T + + M+ E EIA+ + GLN Y++++
Sbjct: 231 SIILELKKEEPDMFTPDRIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290
Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N R +G L+ + P W+ + + + +FFE + T Y + L D
Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALVDD 347
>gi|317011285|gb|ADU85032.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori SouthAfrica7]
Length = 341
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 173/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I + +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ ++
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEK 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E ++ +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLIDEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKIYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|265756566|ref|ZP_06090772.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
3_1_33FAA]
gi|263233754|gb|EEZ19369.1| ribonucleoside-diphosphate reductase, beta subunit [Bacteroides sp.
3_1_33FAA]
Length = 349
Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ E ++ +RM+ + ++N ++Y W + Y A NN W+P E+ + D +
Sbjct: 11 LFNPEGDTDLRHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDTKDY 70
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
L ER + L F +SL +NN+ I +++ E L QAF+E VHS
Sbjct: 71 ---PHLDQAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHS 126
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ Y++ S+ E R K + L T + + D L
Sbjct: 127 QSYSYMLDSICSPEK------RNEILYQWKTDEHLLKRNTFIGNCYNEFQESQDGFTLMK 180
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E
Sbjct: 181 TLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKE 240
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+T + + M+ E EI + + GLN E Y+Q++ N R +G
Sbjct: 241 EPDLFTPDKVKIYEYMMREGVKQEIEWGQYVIGDNIQGLNWKMIEDYIQYLGNLRWSSLG 300
Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
PL++ + P W+S+ + + +FFE + T Y + L+ D
Sbjct: 301 FGPLYEENHKEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348
>gi|304439119|ref|ZP_07399038.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304372478|gb|EFM26065.1| ribonucleotide-diphosphate reductase beta subunit [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 347
Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 84/350 (24%), Positives = 164/350 (46%), Gaps = 19/350 (5%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ +++ + ++N + ++N +KY W + Y A NN W+P E+ + D+ +
Sbjct: 9 LFNENGDIDLQKRTIINGNTTNLNDFNNIKYKWTSDWYRQAMNNFWIPEEINLSQDVLDY 68
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K L + E+ + L F +S+ + + +++ E L Q+F+E++HS
Sbjct: 69 K---ILDEAEKRAFDKILSFLIYLDSIQTAQLP-NLQAYITANEINLCLSIQSFQESIHS 124
Query: 129 HTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
++ YI+ ++ E E+ Y ++ + + + D + L
Sbjct: 125 QSYSYILDTICSPEERTEILYQYINDKTLLERNKYITDQYAGFLN--------DKTKGNL 176
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K
Sbjct: 177 MHALIANYILEGIYFYSGFMFFYNLGRNGKMPGTVQEIRYINRDENTHLWLFRSIILDLK 236
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T+E ++ R +L EIA+ + GL + E Y++++ N R
Sbjct: 237 KEQPELFTEEKVEEYRALLKYGVEEEIAWGKYVIGDDIQGLTSKMVEDYIKYLGNLRATN 296
Query: 307 IGLEPLFKY---TENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
+G EPL++ W+++ D+ + +FFE +VT Y + A ++ D
Sbjct: 297 LGFEPLYEGYDKEVESMKWVTQYADINLLKTDFFEAKVTAYSKSAIIEDD 346
>gi|327312835|ref|YP_004328272.1| ribonucleoside-diphosphate reductase subunit beta [Prevotella
denticola F0289]
gi|326946303|gb|AEA22188.1| ribonucleoside-diphosphate reductase, beta subunit [Prevotella
denticola F0289]
Length = 348
Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats.
Identities = 86/357 (24%), Positives = 155/357 (43%), Gaps = 15/357 (4%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M N + + ++ +RM+ + ++N +KY W + Y A NN W+P E+
Sbjct: 1 MDNKLKRNTLFNPSGDTDLRLRRMIGGNTTNLNDFNNMKYSWVSDWYRQAMNNFWIPEEI 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D + L ER + L F +SL +NN+ + +++ E L
Sbjct: 61 NLSQDFKDY---PRLDKAERTAYDKILSFLVFLDSLQSNNLP-TVSEYITANEVNLCLHI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
QAF+E +HS ++ Y++ ++ E R K + L + +
Sbjct: 117 QAFQECIHSQSYSYMLDTICSPEE------RNDILYQWKTDEHLLNRNKFIGDCYNEFHE 170
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
D+ L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL
Sbjct: 171 KRDKFSLMKTLIANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFR 230
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+I ++K E P ++T + + M+ E EIA+ + GLN Y++++
Sbjct: 231 SIILELKKEEPDMFTSDKIKVYEDMMREGVRQEIAWGQYVIGNDVQGLNEQMVSDYIRYL 290
Query: 300 ANRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N R +G L+ + P W+ + + + +FFE + T Y + L D
Sbjct: 291 GNLRWSGLGFGFLYDDNRKEPENMKWVGQYSNANMVKTDFFEAKSTAYAKSTALVDD 347
>gi|194363985|ref|YP_002026595.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
R551-3]
gi|194346789|gb|ACF49912.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
R551-3]
Length = 339
Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats.
Identities = 95/321 (29%), Positives = 171/321 (53%), Gaps = 8/321 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L P++Y ++ Y +A N W E+ Q D++ S ++ ER +I R + FFA+
Sbjct: 17 TLRPMRYPQFYDMYRNAIKNTWTVEEINFQIDISDLHS--KMSPGERHLIHRLVAFFATG 74
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMY 149
+S+V+NN+VL +Y+HL+ PE R YL RQ +EEA+H + ++ + D E F
Sbjct: 75 DSIVSNNLVLNLYQHLNAPEARMYLSRQLYEEALHVQFYLTLLDNYLPDPDERVKAFAAV 134
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+ SI KA++ ++ ++ + T++ ++FL + F EG++F+ FA +
Sbjct: 135 ENIDSIKKKADFCFKWIDSIQNLK-RIETREERRQFLLNQICFAACIEGLFFFAAFAYVY 193
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ G+A ++ RDES H++F + ++ I+ E P L+ + +Q ML EA
Sbjct: 194 YFRSRGLLNGLASGTNWVFRDESAHMDFAFECVDVIREEEPDLFDDKMKQDVYDMLAEAI 253
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E+ +A + + G G++ QY+Q A+ H++G+E + NP +M E+ D+
Sbjct: 254 ECEVQFAEDVLSGGVAGISTRDMRQYLQHCADNHFHRLGMERKYNV-RNPLSFM-ELQDV 311
Query: 330 KKEKNFFETRVTEYQQGAELK 350
++ NFFE R + YQ G + +
Sbjct: 312 QELTNFFERRASAYQVGVQGE 332
>gi|109947017|ref|YP_664245.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
acinonychis str. Sheeba]
gi|109714238|emb|CAJ99246.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
acinonychis str. Sheeba]
Length = 341
Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats.
Identities = 90/348 (25%), Positives = 173/348 (49%), Gaps = 14/348 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I + +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 5 RKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDDK 64
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EEA
Sbjct: 65 RDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEEA 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 122 LHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEEN 173
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN +
Sbjct: 174 ILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINAL 233
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E L+T + + M +A +E ++ +GL + EQY+QF+A+ R
Sbjct: 234 RNERADLFTPQLIDEVIEMFKKAVKIEASWGDYITQGKILGLTSSLIEQYIQFLADSRLS 293
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 294 KVGIAKIYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|108563454|ref|YP_627770.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori HPAG1]
gi|107837227|gb|ABF85096.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter
pylori HPAG1]
Length = 341
Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 173/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I + +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E + +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|308183194|ref|YP_003927321.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori PeCan4]
gi|308065379|gb|ADO07271.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori PeCan4]
Length = 341
Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 173/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I + +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E ++ +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|224539244|ref|ZP_03679783.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519126|gb|EEF88231.1| hypothetical protein BACCELL_04146 [Bacteroides cellulosilyticus
DSM 14838]
Length = 349
Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats.
Identities = 88/356 (24%), Positives = 156/356 (43%), Gaps = 15/356 (4%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
A + + + ++M+ + ++N ++Y W + Y A NN W+P E+
Sbjct: 3 AKKLKRNALFNPSGDTEIRLRKMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEIN 62
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ D + L + ER + L F +SL +NN+ I +++ E L Q
Sbjct: 63 LTQDTKDY---PLLDEAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQ 118
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AF+E VHS ++ Y++ ++ E R K + L T + +
Sbjct: 119 AFQECVHSQSYSYMLDTICSPEK------RNDILYQWKTDEHLLKRNTFIGNCYNEFQES 172
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL
Sbjct: 173 QDGFTLMKTLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRS 232
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I ++K E P L+T + Q M+ E EI + + GLN Y+ ++
Sbjct: 233 IILELKKEEPELFTPDKVQIYENMMREGVKQEIEWGQYVIGDNIQGLNRQMIADYIHYLG 292
Query: 301 NRRCHQIGLEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
N R +G PL+++ + P W+ + + + +FFE + T Y + L+ D
Sbjct: 293 NLRWSSLGNPPLYEHNRKEPESMHWVLQYSNANMVKTDFFEAKSTAYAKSTALEDD 348
>gi|261838422|gb|ACX98188.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter
pylori 51]
Length = 341
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 173/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E ++ +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|237749822|ref|ZP_04580302.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
bilis ATCC 43879]
gi|229374572|gb|EEO24963.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
bilis ATCC 43879]
Length = 351
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 92/347 (26%), Positives = 160/347 (46%), Gaps = 14/347 (4%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
N I +V+++R+ + +L +KY WA+ + N W P EV
Sbjct: 9 DNRVSRKKIYNPHSTESVNERRIFGGNPTAIFELNKIKYQWAYNLLRTMFANTWFPEEVN 68
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D + LT E+ R L +SL NN+ I +++ PE L+RQ
Sbjct: 69 MNQDKRDYME---LTLQEKQGYDRALAQLIFMDSLQTNNLTDNINPYITCPEINMLLVRQ 125
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEE++H+ ++ ++ S+ + E++ M+R+ + +K ++ L+ T
Sbjct: 126 AFEESLHAQSYAVMVDSISANTDEIYQMWRKDDKLRSKNDYIADVYTDLAKNPTETNL-- 183
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ EG++FY+GFA +L R+ KM AE ++I RDE HL
Sbjct: 184 ------IKAMFANQILEGIYFYSGFAFFYTLARSGKMQNSAEMIRFIQRDEITHLTIFQQ 237
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I + E P L+T+ Q + M +A LE ++ +GL A QY++++A
Sbjct: 238 MIISTRKERPDLFTQALQDEVMEMFRQAVDLESSWGEYITQGQILGLTAKIIRQYIEYLA 297
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQG 346
++R + L+ T+NP W+ E ++ + NFFE +V Y +G
Sbjct: 298 DKRLKAVDYPILYN-TQNPIQWVDEQVNFNNQRTNFFEAKVRNYTRG 343
>gi|188527870|ref|YP_001910557.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Shi470]
gi|188144110|gb|ACD48527.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Shi470]
gi|308063873|gb|ADO05760.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Sat464]
Length = 341
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 172/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 SILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E ++ +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|221633388|ref|YP_002522613.1| ribonucleotide-diphosphate reductase subunit beta [Thermomicrobium
roseum DSM 5159]
gi|221156578|gb|ACM05705.1| ribonucleoside-diphosphate reductase, beta subunit [Thermomicrobium
roseum DSM 5159]
Length = 328
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 114/326 (34%), Positives = 188/326 (57%), Gaps = 5/326 (1%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+R+L +L PL + WA+ A +N W P EVP+ DD+ W + L+D+ER
Sbjct: 3 RRLLGGDPLAAVELFPLSHPWAYAHVQQAKHNTWFPEEVPLHDDVRDWHER--LSDEERR 60
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
++ LGFF ESLV N++L++YR ++ PE R YL RQA+EEA H F+Y+I +L L
Sbjct: 61 AVEMFLGFFNPMESLVTTNLLLSLYRAVTAPEARLYLARQAWEEANHVMAFEYVIKTLPL 120
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
D +F ++ E P++ AK + Q + + + + Q +++L ++V+ EG++
Sbjct: 121 DRERVFGLHVEHPAVAAKELFQRQLAEQWLV-TPDVESVEGLQRLVRNLVGYFVILEGIF 179
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA L+ + N + G+ ++++DESLHL+FGI +I I E+P + + F ++
Sbjct: 180 FYSGFALALAFRQRNLLRGLCTIVDWVLKDESLHLSFGIHLITTILEEHPEIMSAAFGRQ 239
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
R ++ A LE AY +P+ +GL+A +Y+++IA+RR ++GL F NP
Sbjct: 240 LRELILRAVELEEAYNRAVLPEPLIGLDADVLNRYVRYIADRRLEELGLPIAFG-EPNPL 298
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
WM +D+ + NFFE R Y+ G
Sbjct: 299 RWMVAQVDMPEIVNFFEARNIHYEVG 324
>gi|308184827|ref|YP_003928960.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori SJM180]
gi|308060747|gb|ADO02643.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori SJM180]
Length = 341
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 174/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I + +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E+++ +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPKLINEVIEMFKKAVEIEVSWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|261839822|gb|ACX99587.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori 52]
Length = 341
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 172/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E + +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|160915703|ref|ZP_02077911.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991]
gi|158432179|gb|EDP10468.1| hypothetical protein EUBDOL_01712 [Eubacterium dolichum DSM 3991]
Length = 353
Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats.
Identities = 89/351 (25%), Positives = 159/351 (45%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
P+ ++V ++M+N + ++N +KY WA + Y A NN W+P E+ + D+
Sbjct: 12 RKPLFNEHGDIDVHLRKMINGNTTNLNDFNHMKYTWASDWYRQAMNNFWIPEEINLNQDV 71
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ L+ E+ + L F +S+ N+ I +++ E L QAF+EA
Sbjct: 72 KDYR---KLSKAEKDAYDKTLSFLIFLDSIQTANLP-NIGEYITANEVNLCLTIQAFQEA 127
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ S+ R K + L + + D E
Sbjct: 128 VHSQSYSYMLDSICSP------QERNAILYQWKDDPHLLARNKFIGDLYNDFMEHRDGEH 181
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L + + EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++ ++
Sbjct: 182 LIKTLIANYILEGIYFYSGFMFFYNLGRMGKMPGSVQEIRYINRDENTHLWLFRSILLEL 241
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E P L+T E + + ML E+ +A + + GL Y+ ++ N R +
Sbjct: 242 KKEEPQLFTPEHIEIYKGMLKHGVEEEVKWAEYVLGERMEGLTMEMVADYIHYLGNLRSN 301
Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
+G L+ Y + P W+S + + +FFE + T Y + + L D
Sbjct: 302 ALGFGSLYDGYEKEPASMEWVSMYSNANIIKTDFFEAKSTAYAKSSALVDD 352
>gi|217034470|ref|ZP_03439882.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10]
gi|216943072|gb|EEC22549.1| hypothetical protein HP9810_890g15 [Helicobacter pylori 98-10]
gi|317177841|dbj|BAJ55630.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori F16]
Length = 341
Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 171/349 (48%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E + +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIESLWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|297380266|gb|ADI35153.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori v225d]
gi|308062365|gb|ADO04253.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Cuz20]
gi|317180823|dbj|BAJ58609.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori F32]
gi|332673890|gb|AEE70707.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori 83]
Length = 341
Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 172/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E ++ +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|317178607|dbj|BAJ56395.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori F30]
Length = 341
Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 172/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSTEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E ++ +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|317014473|gb|ADU81909.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Gambia94/24]
Length = 341
Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats.
Identities = 92/349 (26%), Positives = 173/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL ANN++ I +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E ++ +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKIYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|210135249|ref|YP_002301688.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori P12]
gi|210133217|gb|ACJ08208.1| ribonucleoside-diphosphate reductase 1 beta subunit [Helicobacter
pylori P12]
Length = 341
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 92/349 (26%), Positives = 173/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL ANN++ I +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E ++ +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|315586979|gb|ADU41360.1| ribonucleotide-diphosphate reductase beta subunit [Helicobacter
pylori 35A]
Length = 341
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 173/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKVLFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E ++ +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|207092116|ref|ZP_03239903.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori HPKX_438_AG0C1]
Length = 341
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 91/349 (26%), Positives = 171/349 (48%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ I +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E + +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|254779643|ref|YP_003057749.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori B38]
gi|254001555|emb|CAX29573.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
reductase small subunit) [Helicobacter pylori B38]
Length = 341
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 173/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I + +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSTEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E ++ +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|15644992|ref|NP_207162.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori 26695]
gi|2500210|sp|P55983|RIR2_HELPY RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|2313466|gb|AAD07432.1| ribonucleoside diphosphate reductase, beta subunit (nrdB)
[Helicobacter pylori 26695]
Length = 341
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 92/349 (26%), Positives = 172/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL ANN++ I +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E + +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|317182342|dbj|BAJ60126.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori F57]
Length = 341
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 170/349 (48%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKNKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E + +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIGMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|317012862|gb|ADU83470.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori Lithuania75]
Length = 341
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 91/349 (26%), Positives = 173/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I + +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ I +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E ++ +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPKLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|313768143|ref|YP_004061574.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1]
gi|312599750|gb|ADQ91771.1| hypothetical protein BpV1_144c [Bathycoccus sp. RCC1105 virus BpV1]
Length = 387
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 85/329 (25%), Positives = 149/329 (45%), Gaps = 29/329 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ + ML + P+++ W Y A ++W E+ D+ W L+D+E+
Sbjct: 71 ESEPMLLPTLSRFTVFPIEHENLWTLYKKAQMSNWTAEEIDFSKDMDDWNE---LSDNEK 127
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
IK L FFA S+ +V NI + E R + Q+ E VH T+ +I
Sbjct: 128 HFIKYILAFFAGSDGIVFENINNNFADEIQLTEARSFYAYQSHNEMVHGETYSKLIDKYI 187
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
+ E LF + +P I KA WA+++ D + F + L +
Sbjct: 188 KNSSEKKQLFEAIQTIPCIERKAKWAMKW-------------FDKKRPFAERLLA-FACV 233
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG++F F I L + + G+ + I RDE +H F +++ N +K K
Sbjct: 234 EGIFFSGSFCAIFWLKKRGLLPGLCFSNELISRDEGMHQEFAVELFNMLKN-------KP 286
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
Q ++ +A +E + + +P +G+N+ +Y++++A+R Q+G ++ T
Sbjct: 287 SQNTIEEIIRDAVSIEKEFITDALPCSLIGMNSGKMSEYIEYVADRLSKQVGHNKIWN-T 345
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
+NPF +M E I L + NFFE RV +Y +
Sbjct: 346 KNPFDFM-ENISLDGKTNFFEKRVGDYGK 373
>gi|217032591|ref|ZP_03438080.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128]
gi|298735909|ref|YP_003728434.1| ribonucleoside-diphosphate reductase subunit beta [Helicobacter
pylori B8]
gi|216945727|gb|EEC24352.1| hypothetical protein HPB128_159g17 [Helicobacter pylori B128]
gi|298355098|emb|CBI65970.1| ribonucleoside-diphosphate reductase beta chain [Helicobacter
pylori B8]
Length = 341
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 91/349 (26%), Positives = 172/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I + +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPDSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ I +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E + +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|122921307|pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
gi|122921308|pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
Length = 311
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 79/317 (24%), Positives = 149/317 (47%), Gaps = 28/317 (8%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
+ ++ ++++L+ +D L P+ Y W+ Y A + W E+ + DL ++
Sbjct: 19 FSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFE- 77
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
L D+E+ IK L FFA+S+ +V N+ R + E +++ Q E +HS T
Sbjct: 78 --KLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSET 135
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I + DE E LF+ +P++ KA WA ++ +S
Sbjct: 136 YSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNS--------------FA 181
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+ V EG+ F F I + NK+ G+ + I RDE LH +F + + ++
Sbjct: 182 ERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLEN 241
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
+ P ++ + ++ EA +E ++ E++P +G+N+ QY++F+A+R +
Sbjct: 242 KLP-------EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECL 294
Query: 308 GLEPLFKYTENPFPWMS 324
G +F + +NPF WM
Sbjct: 295 GSPKIF-HAKNPFNWMD 310
>gi|260589755|ref|ZP_05855668.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia
hansenii DSM 20583]
gi|260539995|gb|EEX20564.1| ribonucleoside-diphosphate reductase, beta subunit [Blautia
hansenii DSM 20583]
Length = 359
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 92/350 (26%), Positives = 158/350 (45%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
P+ +V +RM+ + ++N ++YGW Y A NN W+P E+ + D
Sbjct: 19 KPLFNPSGDTDVRFRRMIGGNTTNLNDFNNMRYGWVKGWYRQAMNNFWIPEEINLSQDRK 78
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L ER + L F +S+ + N+ I +++ E L Q F+E V
Sbjct: 79 DY---GELLGKERQAYDKILSFLVFLDSIQSANLP-CIGEYITANEINLCLSIQTFQECV 134
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ ++ E R K + L T + D L
Sbjct: 135 HSQSYSYMLDTICSPEK------RNEILYQWKTDERLLKRNTFIGELYNEFQMKKDSFTL 188
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I Q+K
Sbjct: 189 LKVMMANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNMILQLK 248
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+TKE Q + ML E EIA+ H + G++ +Y++++ N R
Sbjct: 249 EEEPELFTKENIQALKEMLMEGVEQEIAWGHYVLGDDIPGISKEMITEYIKYLGNLRFTG 308
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G + ++ Y + P W+S + + +FFE + T Y + L D
Sbjct: 309 LGFDVVYPGYEKEPESMKWVSYYSNANMVKTDFFEAKSTAYAKSTALLDD 358
>gi|255008714|ref|ZP_05280840.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
fragilis 3_1_12]
gi|313146449|ref|ZP_07808642.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
fragilis 3_1_12]
gi|313135216|gb|EFR52576.1| ribonucleotide-diphosphate reductase subunit beta [Bacteroides
fragilis 3_1_12]
Length = 349
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 90/348 (25%), Positives = 155/348 (44%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ E + ++M+ + ++N + Y W + Y A NN W+P E+ + D +
Sbjct: 11 LFNPEGDTELRLRKMIGGNTTNLNDFNNMHYKWVSDWYRQAMNNFWIPEEINLTQDTKDY 70
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
L ER + L F +SL +NN+ I +++ E L QAF+E VHS
Sbjct: 71 ---PHLDKAERTAYDKILSFLVFLDSLQSNNLP-TISEYITANEVNLCLHIQAFQECVHS 126
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ Y++ S+ E R K + L T + + D L
Sbjct: 127 QSYSYMLDSICSPEE------RNDILYQWKTDEHLLKRNTFIGNCYNEFQESQDSFTLMK 180
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++K E
Sbjct: 181 TLIANYILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIILELKKE 240
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+T + + M+ E EI + + GLN E Y+ ++ N R +G
Sbjct: 241 EPELFTSDRVKVYEAMMREGVKQEIEWGQYVIGDEIQGLNKKMIEDYIHYLGNLRWTSLG 300
Query: 309 LEPLFKYT-ENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
PL++ + P W+S+ + + +FFE + T Y + L+ D
Sbjct: 301 FTPLYEDNLKEPESMRWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 348
>gi|297587320|ref|ZP_06945965.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna
ATCC 53516]
gi|297575301|gb|EFH94020.1| ribonucleotide-diphosphate reductase beta subunit [Finegoldia magna
ATCC 53516]
Length = 354
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 85/348 (24%), Positives = 164/348 (47%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ +
Sbjct: 16 LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 75
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ L++DE++ + L F +SL + + +++ E L QAF+E++HS
Sbjct: 76 R---NLSEDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHS 131
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ YI+ ++ E R K + L + ++ +
Sbjct: 132 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEEKSERNFMK 185
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K E
Sbjct: 186 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 245
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+T+E + + M+ + + EI +A + + GL+ E Y++++ N R +G
Sbjct: 246 RPELFTEEKNAQYKEMIKQGSEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 305
Query: 309 LEPLFK--YTENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
++ E P W+SE D K + +FFE + + Y + A ++ D
Sbjct: 306 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 353
>gi|15612081|ref|NP_223733.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori J99]
gi|11387046|sp|Q9ZKC3|RIR2_HELPJ RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|4155613|gb|AAD06604.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN [Helicobacter
pylori J99]
gi|307637755|gb|ADN80205.1| Ribonucleotide reductase of classIa beta subunit [Helicobacter
pylori 908]
gi|325996356|gb|ADZ51761.1| Ribonucleotide reductase of class Ia beta subunit [Helicobacter
pylori 2018]
gi|325997944|gb|ADZ50152.1| Ribonucleosidase diphosphate reductase beta subunit [Helicobacter
pylori 2017]
Length = 341
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 92/349 (26%), Positives = 173/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL ANN++ I +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E ++ +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPQLINEVIEMFKKAVEIEASWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|302379704|ref|ZP_07268189.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
magna ACS-171-V-Col3]
gi|302312611|gb|EFK94607.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
magna ACS-171-V-Col3]
Length = 347
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 86/348 (24%), Positives = 162/348 (46%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ + + +R++N + ++N +KY W E Y A NN W+P E+ + D+ +
Sbjct: 9 LFNEHGDIELSKRRIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 68
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ L++DE++ + L F +SL + + +++ E L QAF+E++HS
Sbjct: 69 R---NLSEDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHS 124
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ YI+ ++ E R K + L + + +
Sbjct: 125 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMK 178
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K E
Sbjct: 179 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 238
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+T+E + + M+ + EI +A + + GL+ E Y++++ N R +G
Sbjct: 239 RPELFTEEKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 298
Query: 309 LEPLFK--YTENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
++ E P W+SE D K + +FFE + + Y + A ++ D
Sbjct: 299 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 346
>gi|255658865|ref|ZP_05404274.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella
multacida DSM 20544]
gi|260849270|gb|EEX69277.1| ribonucleoside-diphosphate reductase, beta subunit [Mitsuokella
multacida DSM 20544]
Length = 347
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 163/349 (46%), Gaps = 15/349 (4%)
Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
P+ E ++V +R++ + ++N LKY W + Y A NN W+P E+ + D+
Sbjct: 8 PLFNPEGDIDVTQRRLIGGNTTNMNDFNNLKYTWTADWYRQAMNNFWIPEEINLGQDVKD 67
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
++ L ER + L F +S+ + N+ + +++ E L Q+F+E VH
Sbjct: 68 YRQ---LPAAERRAYDKILSFLVFLDSVQSANLP-NVSAYITANEVDLCLTIQSFQECVH 123
Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
S ++ Y++ ++ + R+ K + L T + ++ +E
Sbjct: 124 SQSYSYMLDTIASPDE------RQEIIFQWKDDEHLLARNTFIGDLYNEFQQEQSRENFL 177
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+ + + EG++FY+GF +LGR +M G ++ +YI RDE+ HL +++ ++
Sbjct: 178 RVLIANYILEGIYFYSGFMFFYNLGRIGRMPGSVQEIRYINRDENTHLWLFRNILRDLRA 237
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
E P L+T E ++ R M+ E EIA+ + GLN E Y+ ++ N R I
Sbjct: 238 EEPDLFTPEREEMMREMIREGVRQEIAWGKYAIGNEVEGLNEKMIEDYVHYLGNARAESI 297
Query: 308 GLEPLFKY-TENP--FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
GL L++ E P W+S+ + + +F E R T Y + L D
Sbjct: 298 GLGTLYEGFEEEPSSMRWVSQYANPNFIKTDFIEGRSTAYAKSTALVDD 346
>gi|289425969|ref|ZP_06427716.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes SK187]
gi|289153512|gb|EFD02226.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes SK187]
gi|313763766|gb|EFS35130.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL013PA1]
gi|313802998|gb|EFS44206.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL110PA2]
gi|313816916|gb|EFS54630.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL059PA1]
gi|313829718|gb|EFS67432.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL063PA2]
gi|313839374|gb|EFS77088.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL086PA1]
gi|314916474|gb|EFS80305.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL005PA4]
gi|314932316|gb|EFS96147.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL067PA1]
gi|314956590|gb|EFT00842.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL027PA1]
gi|314959472|gb|EFT03574.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL002PA1]
gi|314964864|gb|EFT08964.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL082PA1]
gi|314968630|gb|EFT12728.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL037PA1]
gi|315079174|gb|EFT51177.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL053PA2]
gi|315100241|gb|EFT72217.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL059PA2]
gi|315102565|gb|EFT74541.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL046PA1]
gi|315109517|gb|EFT81493.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL030PA2]
gi|327455890|gb|EGF02545.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL087PA3]
gi|327458042|gb|EGF04697.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL083PA2]
gi|328757204|gb|EGF70820.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL087PA1]
gi|328757585|gb|EGF71201.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL025PA2]
Length = 328
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 95/310 (30%), Positives = 169/310 (54%), Gaps = 4/310 (1%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E
Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADF---ARMTPDEHHALTHLMSYFNPNE 69
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP
Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
S+ K + + + + ++ + T + Q+F+++L + ++ EG+WFY+GF LS +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249
Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
Y + +P+G +G+NA Y++++A+RR ++G EP ++ NP WM+ D +
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVA-NPAKWMATANDTLQVV 308
Query: 334 NFFETRVTEY 343
NFFE T Y
Sbjct: 309 NFFEATNTSY 318
>gi|314918862|gb|EFS82693.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL050PA1]
gi|314921071|gb|EFS84902.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL050PA3]
Length = 328
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 94/310 (30%), Positives = 169/310 (54%), Gaps = 4/310 (1%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E
Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADF---ARMTPDEHHALTHLMSYFNPNE 69
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP
Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
S+ K + + + + ++ + T + ++F+++L + ++ EG+WFY+GF LS +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTRDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249
Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
Y + +P+G +G+NA Y++++A+RR ++G EP ++ NP WM+ D +
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVA-NPAKWMATANDTLQVV 308
Query: 334 NFFETRVTEY 343
NFFE T Y
Sbjct: 309 NFFEATNTSY 318
>gi|169824933|ref|YP_001692544.1| ribonucleotide-diphosphate reductase subunit beta [Finegoldia magna
ATCC 29328]
gi|167831738|dbj|BAG08654.1| ribonucleoside-diphosphate reductase beta subunit [Finegoldia magna
ATCC 29328]
Length = 354
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 85/348 (24%), Positives = 162/348 (46%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ +
Sbjct: 16 LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 75
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ L++DE++ + L F +SL + + +++ E L QAF+E++HS
Sbjct: 76 R---NLSEDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHS 131
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ YI+ ++ E R K + L + + +
Sbjct: 132 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMK 185
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K E
Sbjct: 186 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 245
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+T+E + + M+ + EI +A + + GL+ E Y++++ N R +G
Sbjct: 246 RPELFTEEKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 305
Query: 309 LEPLFK--YTENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
++ E P W+SE D K + +FFE + + Y + A ++ D
Sbjct: 306 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 353
>gi|208434985|ref|YP_002266651.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter
pylori G27]
gi|208432914|gb|ACI27785.1| ribonucleoside diphosphate reductase, beta subunit [Helicobacter
pylori G27]
Length = 341
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 92/349 (26%), Positives = 172/349 (49%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL ANN++ I +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSAEEKIGYDRALAQLIFMDSLQANNLIDNINPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E + +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|317009697|gb|ADU80277.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori India7]
Length = 341
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 171/349 (48%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +V+++++ + L +KY WA + + N W EV M DD
Sbjct: 4 SRKKIYNPNSTESVNERKIFGGNPTSMFDLNKIKYQWADHLWKTMLANTWFAEEVSMNDD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ +E++ R L +SL NN++ + +++PE L+RQA+EE
Sbjct: 64 KRDY---LKLSVEEKIGYDRALAQLIFMDSLQTNNLIDNVNPFITSPEINLCLVRQAYEE 120
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH + ++ S+ + E+++M+R + +K ++ Q L+ K+ +E
Sbjct: 121 ALHSHAYAVMVESISANTEEIYDMWRNDMQLKSKNDYIAQVYMELA--------KNPTEE 172
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R+ KM+G A+ ++I RDE HL ++IN
Sbjct: 173 NILKALFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINA 232
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T + + M +A +E + +GL + EQY+QF+A+ R
Sbjct: 233 LRNERADLFTPKLINEVIEMFKKAVEIEALWGDYITQGKILGLTSSLIEQYIQFLADSRL 292
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
++G+ ++ ++P W+ ++ NFFE RV+ Y +G+ D
Sbjct: 293 SKVGIAKVYGV-QHPIKWVESFSSFNEQRSNFFEARVSNYAKGSVSFDD 340
>gi|157736292|ref|YP_001488975.1| ribonucleotide-diphosphate reductase subunit beta [Arcobacter
butzleri RM4018]
gi|157698146|gb|ABV66306.1| ribonucleoside-diphosphate reductase, beta chain [Arcobacter
butzleri RM4018]
Length = 339
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 92/344 (26%), Positives = 165/344 (47%), Gaps = 14/344 (4%)
Query: 11 QAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
+ + +++D+R+ SD + +KY WA + + N W P EV M D +K
Sbjct: 7 YNPDSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTGDAKDYK 66
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
LT E+ M L +SL NN++ I +++ PE L RQ++EEA HS
Sbjct: 67 ---FLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYEEANHSK 123
Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
++ ++ S+ + +++M++ + K + + + LS D D +
Sbjct: 124 SYAVMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLSG--------DIDDRKIVLA 175
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
+ EG++FY GFA I +LG++ KM+G ++ ++I RDE HL ++IN ++ E
Sbjct: 176 LFANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQNMINSVRKER 235
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
P L+T E ++ R M +A LE ++ +G QY++++A+RR +G
Sbjct: 236 PDLFTSELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYLADRRLEAVGY 295
Query: 310 EPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
+ + ++P PW+ + NFFE V Y +G+ D
Sbjct: 296 KAEYGV-KHPIPWVDGYASFNDQRTNFFEGNVVNYSKGSIDFDD 338
>gi|315635423|ref|ZP_07890689.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter
butzleri JV22]
gi|315480181|gb|EFU70848.1| ribonucleotide-diphosphate reductase beta subunit [Arcobacter
butzleri JV22]
Length = 339
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 92/344 (26%), Positives = 166/344 (48%), Gaps = 14/344 (4%)
Query: 11 QAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
+ + +++D+R+ SD + +KY WA + + N W P EV M D +K
Sbjct: 7 YNPDSKESLNDRRVFGGNSDGMINFTRMKYQWALNLWDTMEANTWFPREVQMTGDAKDYK 66
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
LT E+ M L +SL NN++ I +++ PE L RQ++EEA HS
Sbjct: 67 ---FLTPAEKRMYDLVLSQLIFMDSLQTNNLMDNINPYITAPEINACLARQSYEEANHSK 123
Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
++ ++ S+ + +++M++ + K + + + LS D D +
Sbjct: 124 SYAVMVESISDNTDLIYDMWKNDAKLREKNTYIAEVYKNLSG--------DIDDRKIVLA 175
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
+ EG++FY GFA I +LG++ KM+G ++ ++I RDE HL ++IN ++ E
Sbjct: 176 LFANQILEGLYFYAGFAAIYALGKSGKMLGSSQMIRFIQRDEVTHLLLFQNMINSVRKER 235
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
P L+T+E ++ R M +A LE ++ +G QY++++A+RR +G
Sbjct: 236 PDLFTQELEETVRAMFRKAVDLEASWGAYITQGQILGFTDGIIRQYIEYLADRRLEAVGY 295
Query: 310 EPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
+ + ++P PW+ + NFFE V Y +G+ D
Sbjct: 296 KAEYGV-KHPIPWVDGYASFNDQRTNFFEGNVVNYSKGSIDFDD 338
>gi|50843560|ref|YP_056787.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium acnes KPA171202]
gi|282854887|ref|ZP_06264221.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes J139]
gi|289427904|ref|ZP_06429608.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes J165]
gi|295131638|ref|YP_003582301.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes SK137]
gi|50841162|gb|AAT83829.1| ribonucleoside-diphosphate reductase beta chain [Propionibacterium
acnes KPA171202]
gi|282582033|gb|EFB87416.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes J139]
gi|289158787|gb|EFD06987.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes J165]
gi|291376691|gb|ADE00546.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes SK137]
gi|313771782|gb|EFS37748.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL074PA1]
gi|313808408|gb|EFS46875.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL087PA2]
gi|313810605|gb|EFS48319.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL083PA1]
gi|313813765|gb|EFS51479.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL025PA1]
gi|313818171|gb|EFS55885.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL046PA2]
gi|313821029|gb|EFS58743.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL036PA1]
gi|313823899|gb|EFS61613.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL036PA2]
gi|313827161|gb|EFS64875.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL063PA1]
gi|313831646|gb|EFS69360.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL007PA1]
gi|313834800|gb|EFS72514.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL056PA1]
gi|314924366|gb|EFS88197.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL001PA1]
gi|314927054|gb|EFS90885.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL036PA3]
gi|314961874|gb|EFT05975.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL002PA2]
gi|314965892|gb|EFT09991.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL082PA2]
gi|314974996|gb|EFT19091.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL053PA1]
gi|314977908|gb|EFT22002.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL045PA1]
gi|314979603|gb|EFT23697.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL072PA2]
gi|314981613|gb|EFT25706.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL110PA3]
gi|314984684|gb|EFT28776.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL005PA1]
gi|314988338|gb|EFT32429.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL005PA2]
gi|314990428|gb|EFT34519.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL005PA3]
gi|315082361|gb|EFT54337.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL078PA1]
gi|315083809|gb|EFT55785.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL027PA2]
gi|315087306|gb|EFT59282.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL002PA3]
gi|315089724|gb|EFT61700.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL072PA1]
gi|315092253|gb|EFT64229.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL110PA4]
gi|315094826|gb|EFT66802.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL060PA1]
gi|315095599|gb|EFT67575.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL038PA1]
gi|315104692|gb|EFT76668.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL050PA2]
gi|315107754|gb|EFT79730.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL030PA1]
gi|327326613|gb|EGE68401.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL096PA3]
gi|327332877|gb|EGE74609.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL096PA2]
gi|327335278|gb|EGE76988.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL097PA1]
gi|327447704|gb|EGE94358.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL043PA2]
gi|327448579|gb|EGE95233.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL043PA1]
gi|327449568|gb|EGE96222.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL013PA2]
gi|328757395|gb|EGF71011.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL020PA1]
gi|328762002|gb|EGF75508.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL099PA1]
gi|332676502|gb|AEE73318.1| ribonucleoside-diphosphate reductase subunit beta
[Propionibacterium acnes 266]
Length = 328
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 95/310 (30%), Positives = 169/310 (54%), Gaps = 4/310 (1%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E
Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADF---ARMTPDEHHALTHLMSYFNPNE 69
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP
Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
S+ K + + + + ++ + T + Q+F+++L + ++ EG+WFY+GF LS +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249
Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
Y + +P+G +G+NA Y++++A+RR ++G EP ++ NP WM+ D +
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRVV-NPAKWMATANDTLQVV 308
Query: 334 NFFETRVTEY 343
NFFE T Y
Sbjct: 309 NFFEATNTSY 318
>gi|71033209|ref|XP_766246.1| ribonucleotide-diphosphate reductase small subunit [Theileria parva
strain Muguga]
gi|68353203|gb|EAN33963.1| ribonucleotide-diphosphate reductase small subunit, putative
[Theileria parva]
Length = 308
Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 39/323 (12%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +LN + L P+ Y WE Y A + W E+ D W L DER
Sbjct: 7 EEFLLNRNPNRTSLFPIVYPEFWEWYKKAQASFWTAEEIDFSMDYNHWH---RLNKDERH 63
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+ L R + PE + + Q E +HS T+ +I +
Sbjct: 64 FITNVLAFFAASDGIVLENLALKFLRDVKIPEAQSFYSFQIAVENIHSETYSLLIENYVK 123
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
DE E LF + ++ KANWA ++ D+ + V Y E
Sbjct: 124 DEAEKRRLFMAIETIDAVKDKANWAKKWI--------------TDENSFAERIVAYAAVE 169
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G+ F F + L + M G+ + I RDE LH +FG + + +K + P
Sbjct: 170 GILFSGSFCALFWLKKRGLMPGLTFSNELIARDEGLHADFGCFIYHNLKHKLP------- 222
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNA----------PSCEQYMQFIANRRCHQI 307
++ + ++ EA ++E +Y +++P +G+N+ QY++F+A+R +
Sbjct: 223 EEAVQQIIKEAVVVERSYICDSLPCDLIGMNSRKKILTHCLIELMTQYIEFVADRLLQAL 282
Query: 308 GLEPLFKYTENPFPWMSEVIDLK 330
G+ P++ T NPF WM ++I ++
Sbjct: 283 GVRPVYNVT-NPFDWM-QLISVQ 303
>gi|319902178|ref|YP_004161906.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108]
gi|319417209|gb|ADV44320.1| ribonucleotide reductase [Bacteroides helcogenes P 36-108]
Length = 347
Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 86/351 (24%), Positives = 156/351 (44%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
+ + + +RM+ + ++N ++Y W + Y A NN W+P E+ + D
Sbjct: 6 RNALFNPSGDTEILHRRMIGGNTTNLNDFNNMRYKWVSDWYRQAMNNFWIPEEINLTQDT 65
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ L ER+ + L F +SL +NN+ + +++ E L QAF+E
Sbjct: 66 KDY---PLLDKAERVAYDKILSFLVFLDSLQSNNLP-TLSEYITANEVNLCLHIQAFQEC 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
VHS ++ Y++ S+ E R K + L T + + +
Sbjct: 122 VHSQSYSYMLDSICSPEE------RNDILYQWKTDEHLLKRNTFIGNCYNEFQESQNGFA 175
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L + + EG++FY+GF +L R KM G A++ +YI RDE+ HL ++I ++
Sbjct: 176 LVKTLIANYILEGIYFYSGFMFFYNLSRNGKMPGSAQEIRYINRDENTHLWLFRNIILEL 235
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E P L+ + + M+ E EIA+ + GL+ E Y+ ++ N R
Sbjct: 236 KKEEPELFVPDKVKVYEEMMREGVKQEIAWGQYVIGDNIQGLSRKMLEDYIHYLGNLRWK 295
Query: 306 QIGLEPLFKYTE---NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G PL++ + W+S+ + + +FFE + T Y + L+ D
Sbjct: 296 SLGYAPLYEDNQTEPESMHWVSQYSNANMVKTDFFEAKSTAYAKSTALEDD 346
>gi|303234233|ref|ZP_07320879.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
magna BVS033A4]
gi|302494774|gb|EFL54534.1| ribonucleoside-diphosphate reductase, beta subunit [Finegoldia
magna BVS033A4]
Length = 347
Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 85/348 (24%), Positives = 162/348 (46%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ + + ++++N + ++N +KY W E Y A NN W+P E+ + D+ +
Sbjct: 9 LFNEHGDIELSKRKIINGNTTNLNDFNNIKYSWTSEWYRQAMNNFWIPEEINLNQDIKDY 68
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ L++DE++ + L F +SL + + +++ E L QAF+E++HS
Sbjct: 69 R---NLSEDEKIAYDKILSFLIYLDSLQTAQLP-NLEAYITANEINLCLSIQAFQESIHS 124
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ YI+ ++ E R K + L + + +
Sbjct: 125 QSYSYILDTICSPEE------RTDILYQWKDDEFLLERNRFIGDQYNDFFEKKSERNFMK 178
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF +LGR KM G ++ +YI RDE+ HL +I +K E
Sbjct: 179 ALIANYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRSMILDLKKE 238
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+T+E + + M+ + EI +A + + GL+ E Y++++ N R +G
Sbjct: 239 RPELFTEEKNAQYKEMIKQGAEAEIEWAKYVIGEKIQGLSIKMVEDYIKYLGNLRSTGLG 298
Query: 309 LEPLFK--YTENP-FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
++ E P W+SE D K + +FFE + + Y + A ++ D
Sbjct: 299 FGVIYPGYEREIPSMKWVSEYSDPNKIKTDFFEAKPSAYSKSAIIEDD 346
>gi|131840053|ref|YP_001096062.1| ORF23 [Cyprinid herpesvirus 3]
gi|84181618|gb|ABC55221.1| hypothetical protein [Cyprinid herpesvirus 3]
gi|109706628|gb|ABG42854.1| ORF23 [Cyprinid herpesvirus 3]
gi|129560539|dbj|BAF48834.1| ribonucleotide reductase small chain [Cyprinid herpesvirus 3]
Length = 335
Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 93/334 (27%), Positives = 156/334 (46%), Gaps = 27/334 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + L +++ W Y A ++W E+ + D A W+S L+++E+
Sbjct: 14 EPLLAPSNSRFTLDVIEHQDIWSMYKKAQFSNWTAEEIDLAKDTAGWES---LSENEKFF 70
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
+K L FFA+S+ +V N+ + + E R + Q E VHS + ++ + LD
Sbjct: 71 LKNILAFFAASDGIVNENLATRFMKEVQYFEARCFYGFQIAIENVHSEVYAKLLNTYILD 130
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LF +P I KA+WAL + ++ D F + L F V EG
Sbjct: 131 PVERNGLFKAMETMPCIKKKADWALNWIES------------PDATFGERLVAFTAV-EG 177
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + P +
Sbjct: 178 IFFSGAFASIFWLKQKVSMPGLTFSNELISRDEGLHRDFACLLFSSHLRHKP------SK 231
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ R ++ EA +E + +++P VG+N +Y+Q++A+ Q+GL L+ T
Sbjct: 232 ERVRAIITEAVEIEKEFLTQSLPVSLVGMNHDLMCKYIQYVADHLLCQMGLSRLYN-TPC 290
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
PF +M E I L+ + NFFE RV +YQ D
Sbjct: 291 PFDFM-ENISLEGKTNFFEKRVADYQVKTTSTVD 323
>gi|327328671|gb|EGE70431.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL103PA1]
Length = 328
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 95/310 (30%), Positives = 169/310 (54%), Gaps = 4/310 (1%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E
Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADF---ARMTPDEHHALTHLMSYFNPNE 69
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP
Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
S+ K + + + + ++ + T + Q+F+++L + ++ EG+WFY+GF LS +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249
Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
Y + +P+G +G+NA Y++++A+RR ++G EP ++ NP WM+ D +
Sbjct: 250 QYNRDMLPRGILGMNADYVNDYVKYLADRRLEELGFEPEYRIV-NPAKWMATANDTLQVV 308
Query: 334 NFFETRVTEY 343
NFFE T Y
Sbjct: 309 NFFEATNTSY 318
>gi|269963257|ref|ZP_06177590.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3]
gi|269832005|gb|EEZ86131.1| hypothetical protein VME_39740 [Vibrio harveyi 1DA3]
Length = 310
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 93/328 (28%), Positives = 150/328 (45%), Gaps = 30/328 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ L P++Y W+ Y + W E+ DLA LT+ E+ I+ L FF
Sbjct: 5 NKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLAD---LAKLTEGEKHFIRHVLAFF 61
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LF 146
A SE ++ N++ Y + E R +L QAF E +H+ T+ + + D E LF
Sbjct: 62 AQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERLF 121
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
N VP++ KA W +++ + D+ L F +V EG++F F
Sbjct: 122 NAIENVPTVKRKAEWVMKWISS-------------DKTLAMRLIAFGLV-EGLFFAGSFC 167
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
I + + G+A I RDE LH +F + + K QQ+ +
Sbjct: 168 AIYYFRKRGLLAGLAASNDLIARDEGLHFSFSALLFKTLGQ------GKVTQQEFEEICR 221
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
EA +E + E +P +G+NA QY++ A+ G P+F ENPF +M +
Sbjct: 222 EAVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIAGLFGFTPIFG-AENPFDYM-RL 279
Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352
+D++ + NFFE RVTEY++ +L +D
Sbjct: 280 LDMEGKTNFFEKRVTEYKRPQDRQLSFD 307
>gi|313836278|gb|EFS73992.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL037PA2]
gi|314928743|gb|EFS92574.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL044PA1]
gi|314971220|gb|EFT15318.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL037PA3]
gi|328906508|gb|EGG26283.1| ribonucleotide-diphosphate reductase subunit beta
[Propionibacterium sp. P08]
Length = 324
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 98/310 (31%), Positives = 170/310 (54%), Gaps = 8/310 (2%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+ Y WA++ Y A N W P EV + +DLA + +T DE + + +F +E
Sbjct: 13 LKPVTYPWAYDLYNQAVANTWFPNEVQLDEDLADF---ARMTPDEHHALTHLMSYFNPNE 69
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP
Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
S+ K + +++ + ++ + T + Q+F+++L + ++ EG+WFY+GF LS +
Sbjct: 130 SMARKEAFEVEFIKRVTEQTLDITTVEGKQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPDIATDEFAVEIHDMILKGVEMEA 249
Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
Y + +P+G G+NA Y++++A+RR ++GLEP + NP WM+ D +
Sbjct: 250 QYNRDMLPRGIPGMNAD----YVKYLADRRLEELGLEPEYHVA-NPAKWMATANDTLQLV 304
Query: 334 NFFETRVTEY 343
NFFET T Y
Sbjct: 305 NFFETTNTSY 314
>gi|313793687|gb|EFS41718.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL110PA1]
gi|327456018|gb|EGF02673.1| ribonucleoside-diphosphate reductase, beta subunit
[Propionibacterium acnes HL092PA1]
Length = 328
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 95/310 (30%), Positives = 168/310 (54%), Gaps = 4/310 (1%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+ Y WA++ Y A N W P E+ + +DLA + +T DE + + +F +E
Sbjct: 13 LKPVTYSWAYDLYNQAVANTWFPNEIQLDEDLADF---ARMTPDEHHALTHLMSYFNPNE 69
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
LV + +Y +++ EC YL +Q +EEA H F+Y++ + +D E + + VP
Sbjct: 70 LLVNKALAFGVYPYVNAAECHLYLAKQMWEEANHCMAFEYVLETFPIDRDEAYRSHIHVP 129
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
S+ K + + + + ++ + T + Q+F+++L + ++ EG+WFY+GF LS +
Sbjct: 130 SMARKEAFEVAFIKRMTEQTLDITTVEGTQDFVRNLIAYNIILEGIWFYSGFMVALSFRQ 189
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
N + +++RDESLHL FG+++I + ENP + T EF + M+ + +E
Sbjct: 190 RNLLRNFGSLIDWVVRDESLHLKFGMNLILTVLEENPEIATDEFAAEIHDMIVQGVEMEE 249
Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
Y + +P+G G+NA Y++++A+RR ++G EP ++ NP WM+ D +
Sbjct: 250 QYNRDMLPRGIRGMNADYVNDYVKYLADRRLEELGFEPEYRVA-NPAKWMATANDTLQVV 308
Query: 334 NFFETRVTEY 343
NFFE T Y
Sbjct: 309 NFFEATNTSY 318
>gi|299144102|ref|ZP_07037182.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
sp. oral taxon 386 str. F0131]
gi|298518587|gb|EFI42326.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
sp. oral taxon 386 str. F0131]
Length = 346
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 85/352 (24%), Positives = 158/352 (44%), Gaps = 15/352 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ V + ++M+N + ++N +KY W + Y + NN W+P E+ M D
Sbjct: 4 NRKALFNERGDVELTKRKMINGNTTNLNDFNNIKYTWVSDMYRTMMNNFWIPEEINMNQD 63
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ ++ L E+ + L F +S+ N+ I + + E L QA++E
Sbjct: 64 IKDYR---NLDFHEKKAYDKILSFLIFLDSIQTANLP-NISDYTTANEVNLILTIQAYQE 119
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HS ++ YI+ ++ E R + + L + ++ +E
Sbjct: 120 AIHSQSYSYILDTIASPEE------RTEILYQWRDDEHLLNRNKFIGNIYNDFVENHTKE 173
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++I +
Sbjct: 174 TYMKTVMGNYILEGIYFYSGFMFFYNLGRMGKMPGTVQEIRYINRDENTHLWLFRNIIQE 233
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+K E L+T+E + + ML E EI + + G+ A + Y++++ N R
Sbjct: 234 LKKEEVELFTEERINEYKCMLMEGVRQEIEWGQYVIGDNIQGITAQMVKDYIEYLGNLRS 293
Query: 305 HQIGLEPLFK---YTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
IG LF N W+SE + + + +FFE +V+ Y + + + D
Sbjct: 294 RSIGFGNLFDRNIEEPNSMKWVSEYSNPNEIKTDFFEGKVSAYSKSSVFEDD 345
>gi|319942042|ref|ZP_08016361.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella
wadsworthensis 3_1_45B]
gi|319804426|gb|EFW01304.1| ribonucleoside-diphosphate reductase subunit beta [Sutterella
wadsworthensis 3_1_45B]
Length = 344
Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats.
Identities = 88/325 (27%), Positives = 147/325 (45%), Gaps = 19/325 (5%)
Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
+ P +Y WA+E ++ + HW+ TEVPM +D+ ++ LTD ER + + L F
Sbjct: 28 ESRDYYKPFQYPWAYEAFMQSEQMHWLWTEVPMLEDVKDYQQ--KLTDSERDFLTKILRF 85
Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
F + V+ V + PE R L A EAVH + ++I +LGL E ++N
Sbjct: 86 FTQGDIDVSGAYVNSYLPRFKQPEVRMMLSSFAAREAVHIAAYSHLIETLGLPES-IYNE 144
Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
+ + ++ AK ++ + + + + F EGM ++ F +
Sbjct: 145 FLQYEAMAAKHDFFNEVCR-------------DKGDLAAQIAAFSAFTEGMQLFSSFVML 191
Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
L+ R M G+ + + + DE+LH + + ENP LWT E + K +
Sbjct: 192 LNFTRCGTMKGMGQIIAWSIADETLHTESMTKIFREYITENPELWTDELKAKIYGIAEVM 251
Query: 269 TLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
LE + + L Y+++IA+RR +GL+ +FK T NP PW+ ++
Sbjct: 252 VDLEDKFIDLAFGVSEMKRLTREDVRSYIRYIADRRLMGLGLKGIFKSTTNPLPWVDAML 311
Query: 328 DLKKEKNFFETRVTEYQQGA-ELKW 351
NFFE RV +Y +GA W
Sbjct: 312 -GVTHTNFFENRVVDYAKGALTGSW 335
>gi|269105083|ref|ZP_06157778.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268160718|gb|EEZ39216.1| ribonucleotide reductase 2 [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 310
Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats.
Identities = 92/328 (28%), Positives = 152/328 (46%), Gaps = 30/328 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ L P++Y W+ Y + W E+ DLA LT+ E+ I+ L FF
Sbjct: 5 NKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLAD---LAKLTEGEKHFIRHVLAFF 61
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LF 146
A SE ++ N++ Y + E R +L QAF E +H+ T+ + + E LF
Sbjct: 62 AQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPAVEERERLF 121
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
N VP++ KA W +++ + D+ L F +V EG++F F
Sbjct: 122 NAIENVPTVKRKAEWVMKWISS-------------DKPLTMRLIAFGLV-EGLFFAGSFC 167
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
I + + + G+A I RDE LH +F + + K QQ+ +
Sbjct: 168 AIYYFRKRSLLAGLAASNDLIARDEGLHFSFSALLFKTLGQ------GKVTQQEFEEICR 221
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
EA +E + E +P +G+NA QY++ A+ G +P+F Y +NPF +M +
Sbjct: 222 EAVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIAGLFGFDPIF-YAKNPFDYM-RL 279
Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352
+D++ + NFFE RVTEY++ +L +D
Sbjct: 280 LDMEGKTNFFEKRVTEYKRPQDRQLSFD 307
>gi|292658982|gb|ADE34370.1| ribonucleotide reductase small chain [Turbot reddish body
iridovirus]
Length = 312
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 88/322 (27%), Positives = 147/322 (45%), Gaps = 28/322 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
D L P W Y A + W EV + D+ W + LT+ ER + L FF
Sbjct: 2 DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58
Query: 90 ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146
A ++ +V +N+V + L PE R + + E +H+ + +I +L E + LF
Sbjct: 59 AMADGIVGDNLVCNFAKELDHIPEARAFYGFRVAMENIHAEMYTQLIITLVAKENQAALF 118
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
+ ++P + AKA WA Q+ P + + + EG+ F FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNATHKP-------------IATRLLAFAAVEGVMFSGSFA 165
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
I L + + M G+A + I RDE LH +F + Q+ K Q+ + ++
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMAN-------KPSQEDAHQIIS 218
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
+A +E A+ E + +G+N+ S Y+QF+A+R +G ++ NPF +M
Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMRLYIQFVADRLLDALGYAKMYNVA-NPFDFMD-N 276
Query: 327 IDLKKEKNFFETRVTEYQQGAE 348
I ++ + NFFE RV+EYQ+
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGV 298
>gi|282174133|ref|YP_003358235.1| ORF96 [Anguillid herpesvirus 1]
gi|281308976|gb|ADA57859.1| ORF96 [Anguillid herpesvirus 1]
Length = 328
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 87/327 (26%), Positives = 149/327 (45%), Gaps = 26/327 (7%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ ++ + P++ W Y +A +W EV + D+ W+ + L DER
Sbjct: 7 EPLLDPANNRDVTFPIREHAIWAMYKTAQAANWSAEEVDLAQDVTHWEKR--LNKDERHF 64
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+++ LV N+ + + E + Q E VH+ + +I +L D
Sbjct: 65 ISHVLAFFAAADGLVNANLGQRFTQEVQYLEATYFYNFQMAIENVHAEMYSKLIATLIKD 124
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P I KA WA ++T D + F + L F V EG
Sbjct: 125 VKEQDRLFNAVERMPCIAKKAEWAKRWTH------------DTNASFGERLVAFAAV-EG 171
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L M G+ ++I RDE LH +F + + P
Sbjct: 172 IFFSGAFAAIFWLKPRGIMPGLIMSNEFISRDEGLHCDFACLLFKDHILGKPGY------ 225
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ ++ EA +E + E +P +G+N Y++F+A+R +G + +N
Sbjct: 226 ERVSQIVTEAVEIEKEFLSEALPVRLLGINCEQMCSYIEFVADRLLAALGFPKRYHV-KN 284
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQ 345
PF +M E I ++ + NFFE V++Y++
Sbjct: 285 PFGFM-ESISMEGKTNFFEKNVSQYKK 310
>gi|322378346|ref|ZP_08052803.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
suis HS1]
gi|322379688|ref|ZP_08054002.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
suis HS5]
gi|321147887|gb|EFX42473.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
suis HS5]
gi|321149232|gb|EFX43675.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
suis HS1]
Length = 342
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 88/344 (25%), Positives = 165/344 (47%), Gaps = 14/344 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I + + V D+++ + L +KY WA + + + N W P EV M D
Sbjct: 5 SRKKIYNPQSQEQVSDRQIFGGNPTSMFDLNKIKYPWASKLWKTMLTNTWFPEEVSMHGD 64
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ L+ E++ R L +SL NN++ I +++PE L+RQA+EE
Sbjct: 65 KNHY---LHLSPQEKIGYDRALAQLIFMDSLQTNNLIDNINPFITSPEINLCLVRQAYEE 121
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A+HSH++ ++ S+ + ++ M+R ++ K + Q LS+ + +
Sbjct: 122 ALHSHSYAVMVESISANSDSIYEMWRTDVALKNKNDCIAQIYMELSN--------NPTEY 173
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
L + EG++FY+GF+ +L R+ +M+G A+ ++I RDE HL+ ++IN
Sbjct: 174 NLLKALFANQILEGIYFYSGFSFFYALARSGRMLGSAQMIRFIQRDELTHLHLFQNMINT 233
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L++ E + M +A LE A+ + L+ Y +++A+ R
Sbjct: 234 LRKERSDLFSPELIAEVNEMFKQAVDLESAWGAYITQGEMLDLSPQILRTYTEYLADTRL 293
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKE-KNFFETRVTEYQQGA 347
+GL L+ ++NP W+ + + NFFE +V+ Y +G+
Sbjct: 294 AVVGLPKLYN-SQNPIKWVDQFANFNSHRSNFFEAKVSNYSKGS 336
>gi|310831442|ref|YP_003970085.1| putative ribonucleoside-diphosphate reductase small subunit
[Cafeteria roenbergensis virus BV-PW1]
gi|309386626|gb|ADO67486.1| putative ribonucleoside-diphosphate reductase small subunit
[Cafeteria roenbergensis virus BV-PW1]
Length = 326
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 87/329 (26%), Positives = 153/329 (46%), Gaps = 29/329 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L + + + P+KY W+ Y W E+ D +K L DE+
Sbjct: 7 NEELLKSENSRYTVFPIKYHKIWDLYKKMEAAFWTAEEIDWSKDKHDFK---KLNQDEQR 63
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
IK L FF++S+++V N+ + + E + Q E +HS + I ++
Sbjct: 64 FIKYVLAFFSASDTIVNINLGERLSHEVQPLEAKIAYTFQMMMEGIHSEVYALQIDNIIE 123
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E + N VP I AK +W L++ +++ F + V+ E
Sbjct: 124 DVQERKDILNSIETVPCIKAKTDWMLKW-------------VKSEESFATRMVAQ-VISE 169
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F F I L N M G+ + I RDE +H ++ I + + ++ +
Sbjct: 170 GLFFSGSFCAIFWLKNKNIMPGLISSNELIARDEGMHCDYSIMLYHMLQNKLS------- 222
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
Q+K + M +A E + E++P +G+NA EQY++F+A++ ++G +FK
Sbjct: 223 QEKIQQMFKDAVETERIFICESLPCSLLGMNADLMEQYIKFVADQLIIKLGYNKIFKVD- 281
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
NPF WM E I ++ + NFFE R T+YQ+
Sbjct: 282 NPFTWM-EAISIEGKTNFFEHRPTQYQRA 309
>gi|306819883|ref|ZP_07453537.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium
yurii subsp. margaretiae ATCC 43715]
gi|304552130|gb|EFM40067.1| ribonucleotide-diphosphate reductase beta subunit [Eubacterium
yurii subsp. margaretiae ATCC 43715]
Length = 347
Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 88/351 (25%), Positives = 164/351 (46%), Gaps = 15/351 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
+ + ++ ++M+N + ++N +KY W + Y A NN W+P E+ + D+
Sbjct: 6 RKQLFNENGDIELNKRKMINGNTTNLNDFNNMKYTWVSDWYRQAMNNFWIPEEINLTQDI 65
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ L+ +E+ + L F +S+ N+ I +++ E L QA++EA
Sbjct: 66 KDYR---KLSKEEKNAYDKILSFLVFLDSIQTANLP-NIGEYITANEVNLCLTIQAYQEA 121
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+HS ++ YI+ ++ E R K + L + D
Sbjct: 122 IHSQSYGYILDTICSPEE------RTNILYQWKDDELLLARNKFIGDLYNEFYYDRSDFN 175
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY+GF SLGR KM G ++ +YI RDE+ HL ++ ++
Sbjct: 176 LVKTAVANYILEGIYFYSGFMFFYSLGRIGKMPGTVQEIRYINRDENTHLWLFRSILLEL 235
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K E H++T+E R M+ + EI +A + GL+ E Y++++ N RC
Sbjct: 236 KKEEAHIFTQENINLFRNMIKQGVEEEIRWAKYAIGDNIQGLSMSMIEDYLKYLGNLRCK 295
Query: 306 QIGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+G + +++ Y + P W+SE D + +FFE +V+ Y + ++ D
Sbjct: 296 GLGFDNIYEGYEKEPESMSWVSEYSDPNAIKTDFFEAKVSAYAKSTVIEDD 346
>gi|227498392|ref|ZP_03928542.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
gi|226903854|gb|EEH89772.1| ribonucleoside-diphosphate reductase [Acidaminococcus sp. D21]
Length = 342
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 88/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)
Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
M+ + ++ + +KY WA Y + NN W+P E+ + +D+ + LTD ER
Sbjct: 18 MIGGNTTNLREWNRIKYDWANTLYRTMLNNFWIPEEISLNEDIKQF---PYLTDSERRAF 74
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
+ + F +S+ + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++
Sbjct: 75 DKIISFLNFLDSVQSENLP-NISRYITAPEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++++ +R ++ + + Q S D ++ V + EG++
Sbjct: 134 TRDKIYDEWRTDSTLLERNRFIADAYQRFSD--------DPNEGNFLHTIVANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R KM + ++YI RDE HL +++ +++ E P L+TKE
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLILFQNILRELRHERPDLFTKEQDAH 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
M+ + EI + +GLN E+Y++++AN R IGL PL+ ++NP
Sbjct: 246 IADMIRQGAENEIKWGQYITDDKILGLNNGLIEKYIKYLANIRLEAIGLAPLYPEISQNP 305
Query: 320 FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
W+ +L + +FFE +VT Y + A +D
Sbjct: 306 MEWIESFSNLNGTKTDFFEAKVTNYTKAAAFDFD 339
>gi|27923845|sp|Q9QTF2|RIR2_RSIV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|5688956|dbj|BAA82755.1| ribonucleotide reductase small subunit [Red sea bream iridovirus]
gi|327396894|dbj|BAK14260.1| ribonucleotide diphosphate reductase small subunit [Red sea bream
iridovirus]
Length = 312
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 89/322 (27%), Positives = 148/322 (45%), Gaps = 28/322 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
D L P W Y A + W EV + D+ W + LT+ ER + L FF
Sbjct: 2 DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58
Query: 90 ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146
A ++ +V +N+V + L PE R + Q E +H+ + +I +L E + LF
Sbjct: 59 AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALF 118
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
+ ++P + AKA WA Q+ P + + + EG+ F FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNATHKP-------------IATRLLAFAAVEGVMFSGSFA 165
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
I L + + M G+A + I RDE LH +F + Q+ K Q + ++
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMAN-------KPCQDDAHQIIS 218
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
+A +E A+ E + +G+N+ S + Y+QF+A+R +G ++ + NPF +M
Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNVS-NPFDFMD-N 276
Query: 327 IDLKKEKNFFETRVTEYQQGAE 348
I ++ + NFFE RV+EYQ+
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGV 298
>gi|56555145|gb|AAV98100.1| RR2 protein [Shrimp white spot syndrome virus]
Length = 328
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 85/326 (26%), Positives = 150/326 (46%), Gaps = 28/326 (8%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
V+ + + P+ + WE Y W E+ + D W+ LT
Sbjct: 28 VDTSKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERDPKDWE---KLTQ 84
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
DE+ I + L FFASS+ +V N+ + + PE R + Q E++H + + +I
Sbjct: 85 DEKDFILQILAFFASSDGIVIENLTTRLRQVAQIPEARSFFDFQVGMESIHGNVYGELID 144
Query: 137 SLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
L DE + LFN + P+I K WA+ + Q+ + + +L V +
Sbjct: 145 RLVPDEKDKAILFNAAQHFPAIKKKEQWAINWMQSNNDLA--------------ELIVAF 190
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG++F FA I + + G+ ++I RDE LH +F ++ + ++ P
Sbjct: 191 AAVEGIFFSGAFASIFWIKNRGILPGLTSSNEFISRDEGLHRDFACMLLKKGFVDTP--- 247
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+++ ++ EA +E + ++P VG+N QY++F+A++ ++GLE +
Sbjct: 248 ---SRERILEIVTEAVRIEQEFLTVSLPVKLVGMNCKLMSQYIEFVADKLLVEMGLEKHY 304
Query: 314 KYTENPFPWMSEVIDLKKEKNFFETR 339
T NPFP+M I L+ + NFFE R
Sbjct: 305 NVT-NPFPFMD-NISLENKTNFFEKR 328
>gi|227541|prf||1706181A ribonucleotide reductase
Length = 290
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 85/302 (28%), Positives = 141/302 (46%), Gaps = 28/302 (9%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
+ W EV + D+ W+S L +ER I L FFA+S+ +V N+V + +
Sbjct: 1 SFWTAEEVDLSKDIQHWES---LKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQIT 57
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168
E R + Q E +HS + +I + D E LFN +P + KA+WAL++
Sbjct: 58 EARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIG- 116
Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
+ + V + EG++F FA I L + M G+ + I
Sbjct: 117 ------------DKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIS 164
Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
RDE LH +F + + K +++ R ++ A +E + E +P +G+N
Sbjct: 165 RDEGLHCDFACLMFKHLV-------HKPSEERVREIIINAVRIEQEFLTEALPVKLIGMN 217
Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 218 CTLMKQYIEFVADRLMLELGFSKVFRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGV 275
Query: 349 LK 350
+
Sbjct: 276 MS 277
>gi|163801385|ref|ZP_02195284.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp.
AND4]
gi|159174874|gb|EDP59674.1| ribonucleoside-diphosphate reductase 1, beta subunit [Vibrio sp.
AND4]
Length = 310
Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats.
Identities = 92/328 (28%), Positives = 149/328 (45%), Gaps = 30/328 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ L P++Y W+ Y + W E+ DL LT+ E+ I+ L FF
Sbjct: 5 NKFSLFPIQYEEIWQAYKTHEAAFWTTEELDFAQDLPD---LVKLTEGEKHFIRHVLAFF 61
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LF 146
A SE ++ N++ Y + E R +L QAF E +H+ T+ + + D E LF
Sbjct: 62 AQSEGMINENLLTRFYGEIEIAEARCFLALQAFNEVIHAETYALQLETYIPDVEERERLF 121
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
N VP++ KA W +++ + D+ L F +V EG++F F
Sbjct: 122 NAIENVPTVQRKAQWVMKWISS-------------DKPLAMRLIAFGLV-EGLFFAGSFC 167
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
I + + G+A I RDE LH +F + + K QQ+ +
Sbjct: 168 AIYYFRKRGLLAGLAASNDLIARDEGLHFSFSALLFKTLGQ------GKVTQQEFEEICR 221
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
EA +E + E +P +G+NA QY++ A+ G P F +ENPF +M +
Sbjct: 222 EAVSIEKEFVTEALPVDLIGMNAELMCQYIEHTADVIADLFGFNPAFG-SENPFDYM-RL 279
Query: 327 IDLKKEKNFFETRVTEYQQGA--ELKWD 352
+D++ + NFFE RVTEY++ +L +D
Sbjct: 280 LDMEGKTNFFEKRVTEYKRPQDRQLSFD 307
>gi|242012701|ref|XP_002427066.1| Ribonucleoside-diphosphate reductase M2 subunit, putative
[Pediculus humanus corporis]
gi|212511324|gb|EEB14328.1| Ribonucleoside-diphosphate reductase M2 subunit, putative
[Pediculus humanus corporis]
Length = 304
Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats.
Identities = 71/304 (23%), Positives = 129/304 (42%), Gaps = 26/304 (8%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ N + + +L + P+++ W Y A + W EV + DL W+
Sbjct: 22 NDSRVFNKEIEPLLKENIKRFVIFPIEFPDIWHMYKKAEASFWTVEEVDLSKDLEHWE-- 79
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L ER I L FFA+S+ +V N+V + + E R + Q E VHS +
Sbjct: 80 -RLKPSERHFISHVLAFFAASDGIVNENLVERFSQEVQVSEARCFYGFQIAMENVHSEMY 138
Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
+I + + E LFN +P + KA+WAL++ +
Sbjct: 139 SLLIDTYIKNPTEKHFLFNAIETMPCVKKKADWALKWI-------------SHKTATFAE 185
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
V + EG++F FA I L + M G+ + I RDE LH +F +
Sbjct: 186 RVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK----- 240
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
++ K + + ++ +A +E + E +P +G+N ++Y++F+A+R ++G
Sbjct: 241 --YVVQKPTEDEICDIIKDAVAIEQEFLTEALPVNLIGMNCSLMKKYIEFVADRLLVELG 298
Query: 309 LEPL 312
+ +
Sbjct: 299 CKKV 302
>gi|50237508|gb|AAT71841.1| ribonucleotide reductase small chain [Rock bream iridovirus]
Length = 312
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 87/322 (27%), Positives = 147/322 (45%), Gaps = 28/322 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
D L P W Y A + W EV + D+ W + LT+ ER + L FF
Sbjct: 2 DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58
Query: 90 ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146
A ++ +V +N+V + L PE R + Q + +H+ + +I +L E + LF
Sbjct: 59 AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAMKNIHAEMYTQLIITLVAKENQAALF 118
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
+ ++P + AKA WA Q+ P + + + EG+ F FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNATHKP-------------IATRLLAFAAVEGVMFSGSFA 165
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
I L + + M G+A + I RDE LH +F + Q+ + Q + ++
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMANK-------PCQDDAHEIIS 218
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
+A +E A+ E + +G+N+ S + Y+QF+A+R +G ++ NPF +M
Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNVG-NPFDFMD-N 276
Query: 327 IDLKKEKNFFETRVTEYQQGAE 348
I ++ + NFFE RV+EYQ+
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGV 298
>gi|88608725|ref|YP_506404.1| ribonucleotide-diphosphate reductase subunit beta [Neorickettsia
sennetsu str. Miyayama]
gi|88600894|gb|ABD46362.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia
sennetsu str. Miyayama]
Length = 322
Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats.
Identities = 79/324 (24%), Positives = 143/324 (44%), Gaps = 18/324 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y WA++ + HW+P E+PM DD+ W K T E+ ++ + FF
Sbjct: 7 RLSYKPFQYDWAYQAWEIQQKIHWLPEEIPMADDVQDWHHKICGT--EKNLLTQIFRFFT 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
++ V + + PE L A E +H + +++ ++G+ E E + +
Sbjct: 65 QADVEVHDCYMRHYAGVFKPPEVCMMLTAFANMETIHIAAYAHLLDTVGMPETE-YLAFT 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + K + D E + L V+ EG+ + FA +L+
Sbjct: 124 KYKQMKEKCEY------------LKAFKMDNPTEIAKTLAVYGAFTEGLQLFASFAILLN 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
R NKM G+ + Y +RDE+LH N + +EN ++ + + + R + +
Sbjct: 172 FPRFNKMKGMGQIIAYSVRDETLHSNSITKLFRTFLLEN-NIDKFKLEAEIREICNAMVH 230
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
E A+ G GL A ++Y+++IAN R Q+G +++ NP W+ V++
Sbjct: 231 HEDAFIDLAFEMGDVEGLKASEVKEYIRYIANLRLKQLGFSEIYEQKVNPLLWLEAVLNT 290
Query: 330 KKEKNFFETRVTEYQQ-GAELKWD 352
+ NFFE + TEY + + WD
Sbjct: 291 VEHTNFFENKATEYSKAATKGTWD 314
>gi|83592781|ref|YP_426533.1| ribonucleotide-diphosphate reductase subunit beta [Rhodospirillum
rubrum ATCC 11170]
gi|83575695|gb|ABC22246.1| Ribonucleoside-diphosphate reductase [Rhodospirillum rubrum ATCC
11170]
Length = 358
Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats.
Identities = 82/328 (25%), Positives = 146/328 (44%), Gaps = 28/328 (8%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
+Y WA+E + HWM EVP+ +DL W S + ++D ER ++ + FF S+ V+
Sbjct: 30 RYPWAYEFWKKQQQVHWMGEEVPLGEDLKDWAS-DRVSDQERNLLTQIFRFFTQSDVEVS 88
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+N + E + + E +H + ++T+LG+ E F+ +R+ ++
Sbjct: 89 DNYLKRYMPIFQPLEIQMMMAAFTNMETIHIDAYALLLTTLGMPRTE-FSAFRDYAAMRD 147
Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
KA++ T + + L +F EGM + FA +L+ R NKM
Sbjct: 148 KADYMH------------TFGVGTMADVSRTLAMFGAFTEGMALFASFAMLLNFPRHNKM 195
Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
G+ + + +RDESLH I + ++ E TK + + LE +
Sbjct: 196 KGMGQIVTWSVRDESLHCQGIIRLFHEWNRET-GALTKPVRDDILDVATTMVGLEEKFVD 254
Query: 278 ETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-----------TENPFPWMSE 325
G G+ A + Y++++A+ R Q+ L L+ + +P PW+ E
Sbjct: 255 LAFELGAIEGMRAEDIKSYVRYVADWRLTQLKLPILYGHFRETEAGYEQLRPHPLPWLVE 314
Query: 326 VIDLKKEKNFFETRVTEYQQ-GAELKWD 352
+++ + NFFE R TEY + + WD
Sbjct: 315 ILNGVEHANFFEQRSTEYSKAATQGAWD 342
>gi|313887688|ref|ZP_07821370.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
harei ACS-146-V-Sch2b]
gi|312846297|gb|EFR33676.1| ribonucleoside-diphosphate reductase, beta subunit [Peptoniphilus
harei ACS-146-V-Sch2b]
Length = 346
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 86/348 (24%), Positives = 157/348 (45%), Gaps = 15/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ + + +R++N + ++N LKY W + Y A NN W+P E+ + D+ +
Sbjct: 8 LFNEKGDIETSKRRVINGNTTNLNDFNNLKYSWTSDWYRQAMNNFWIPEEINLSQDVKDY 67
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ L E+ + L F +SL I + +++ E L Q ++E++HS
Sbjct: 68 RE---LDKAEKTAYDKILSFLIYLDSLQTAQIP-KLQSYVTANEINLCLSIQGYQESIHS 123
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ YI+ ++ E RE K + L + ++ + +
Sbjct: 124 QSYSYILDTICSPEE------REEILYQYKDDEVLLKRNKFIGDQYQDFYENENLDNFMK 177
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF+ +LGR KM G + +YI RDE+ HL +I ++K E
Sbjct: 178 ALIANYILEGIYFYSGFSFFYNLGRMGKMPGTVSEIRYINRDENTHLWLFRSIILEMKKE 237
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P ++T E +K + ML + EIA+ + GLN E Y+ ++ N R +G
Sbjct: 238 EPEIFTDENIEKYKEMLKKGVEEEIAWGKYVIGDEIKGLNEKMIEDYIMYLGNLRSRNLG 297
Query: 309 LEPLFKY---TENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
LF W+SE D + + +FFE R + Y + + ++ D
Sbjct: 298 FGNLFDENIDEPESMKWVSEYSDPNQIKTDFFEARPSAYSKSSVIEDD 345
>gi|313894221|ref|ZP_07827786.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
oral taxon 158 str. F0412]
gi|313441045|gb|EFR59472.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
oral taxon 158 str. F0412]
Length = 342
Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats.
Identities = 87/346 (25%), Positives = 164/346 (47%), Gaps = 15/346 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
I M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ +
Sbjct: 6 IFNEHGDRGTQS--MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF 63
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
LTD ER + + F +S+ + N+ + R+++ E L Q F+E +H+
Sbjct: 64 ---PYLTDYERRAFDKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQTFQEEIHA 119
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ YI+ ++ + R+ + + L + ++ + D + L
Sbjct: 120 QSYSYILDTVTNP------ITRDKIYDEWRTDKTLLARNRFIADAYQRFSDDPSEANLIH 173
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ + EG++FY+GF+ +L R KM + ++YI RDE HL ++I +++ E
Sbjct: 174 TIIANYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRE 233
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
P L+T E ++K M+ + T EIA+ +GLN E+Y++++AN R IG
Sbjct: 234 RPDLFTPELEEKITDMIRQGTENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIG 293
Query: 309 LEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
L L+ +NP W+ +L + +FFE +VT Y + A +D
Sbjct: 294 LPHLYPEIKDNPMEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|330941351|gb|EGH44203.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. pisi str. 1704B]
Length = 317
Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats.
Identities = 158/253 (62%), Positives = 203/253 (80%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D ALWK+ GLTDDER ++ RNLGFF++++SLVANN+VLA+YR ++NPECRQY+LRQ
Sbjct: 124 MTADTALWKNPEGLTDDERRIVMRNLGFFSTADSLVANNLVLAVYRLITNPECRQYILRQ 183
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QY I SL +DEGE+FNMY E+PS+ KA W L+YT+++S P F TGT +
Sbjct: 184 AFEEAIHTHAYQYCIESLAMDEGEIFNMYHEIPSVAKKAAWGLKYTRSISDPKFETGTVE 243
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
D+E L++L +Y V EG++FY GF QILS+GR NKM G+AEQ+QYI+RDES+HLNFGID
Sbjct: 244 TDKELLRNLIAYYCVLEGIFFYCGFTQILSMGRRNKMTGVAEQFQYILRDESMHLNFGID 303
Query: 241 VINQIKIENPHLW 253
VINQIKIENPHLW
Sbjct: 304 VINQIKIENPHLW 316
>gi|282849773|ref|ZP_06259157.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
parvula ATCC 17745]
gi|282580710|gb|EFB86109.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
parvula ATCC 17745]
Length = 342
Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats.
Identities = 88/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)
Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER
Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
+ + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++
Sbjct: 75 DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++++ +R ++ + + Q S D + L + + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R KM + ++YI RDE HL ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
M+ + EIA+ +GLN E+Y++++AN R IGL L+ ENP
Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKENP 305
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
W+ +L + +FFE +VT Y + A +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|330998673|ref|ZP_08322403.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella
excrementihominis YIT 11859]
gi|329576534|gb|EGG58042.1| ribonucleoside-diphosphate reductase, beta subunit [Parasutterella
excrementihominis YIT 11859]
Length = 327
Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats.
Identities = 87/326 (26%), Positives = 151/326 (46%), Gaps = 20/326 (6%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
N P Y WA++ ++++ HW+ TEVPM +D+ WK N LTD ER + + FF
Sbjct: 8 SRNYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWK--NVLTDGERDFLTKVFRFF 65
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
+ V++ V PE R L A EAVH + ++I ++G+ E ++N +
Sbjct: 66 TQGDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPET-VYNEF 124
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+ ++ K ++ F +D + + F EGM ++ F +L
Sbjct: 125 LQYEAMAEKHDF------------FHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLL 172
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ R M G+ + + + DE+LH I + + IENP LWT +++ + +
Sbjct: 173 NFTRNGTMKGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMI 232
Query: 270 LLEIAYAHETMPKGFV---GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
LE A+ + L+ + Y+++I +RR +G++ +FK NP PW+ +
Sbjct: 233 ELEDAFIDLAFGVNDMSKQNLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDSM 292
Query: 327 IDLKKEKNFFETRVTEYQQGA-ELKW 351
+ NFFE RV +Y +GA W
Sbjct: 293 L-GVTHTNFFENRVVDYAKGALSGSW 317
>gi|163781846|ref|ZP_02176846.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1]
gi|159883066|gb|EDP76570.1| ribonucleotide reductase beta chain [Hydrogenivirga sp. 128-5-R1-1]
Length = 350
Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats.
Identities = 91/349 (26%), Positives = 171/349 (48%), Gaps = 19/349 (5%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67
I E + ++R++N ++ +L +KY WA++ Y + +N W+P E+P+ +D
Sbjct: 14 IFNPEGERDAANRRIINGNPTNIIELNNIKYPWAFDLYKTMGFSNFWIPEEIPLMEDKKQ 73
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
++ L+D ER + L F + +S + ++ R +S PE L Q F+E++H
Sbjct: 74 YE--RVLSDYERRAYELVLSFLIALDSFQVD-MLKDFARMISAPEVEMALTAQEFQESIH 130
Query: 128 SHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
++++Q+I+ S+ E++N +RE + + + + +E
Sbjct: 131 AYSYQFILESVVDPIKADEIYNYWREDEKLKERNEVVAEVYNEFI--------RKPSEEN 182
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ + E ++FY+GFA +LGR KM +Q +YI RDE H+ ++I +
Sbjct: 183 FIKAVIGNYILESLYFYSGFAFFYTLGRQGKMTNTVQQIKYINRDELTHVTLFRNMILNL 242
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P L++ E ++ A EI + +G+N ++Y++++ N R
Sbjct: 243 QKEQPELFSPEIKKWIAEYFRYAIDQEIKWGQYVTQDQILGINNQLIDRYIKYLGNLRIT 302
Query: 306 QIGLEPLFK-YTENPFPWMSEV--IDLKKEKNFFETRVTEYQQGAELKW 351
QIGLEPL+ TENP W+ + I+ + +FF+ + Y + ELKW
Sbjct: 303 QIGLEPLYPEITENPMKWIDDFRKIN-NTKTDFFQRKPQTYAKANELKW 350
>gi|288817346|ref|YP_003431693.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus
TK-6]
gi|288786745|dbj|BAI68492.1| ribonucleotide reductase beta subunit [Hydrogenobacter thermophilus
TK-6]
gi|308750953|gb|ADO44436.1| ribonucleotide reductase [Hydrogenobacter thermophilus TK-6]
Length = 342
Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats.
Identities = 92/348 (26%), Positives = 169/348 (48%), Gaps = 17/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67
I + ++++ ++ +L +KY WA++ Y + N W+P E+PM +D
Sbjct: 6 IFNPQGDRETSKRKVIFGNPTNIMELNNVKYQWAFDLYKTMGFTNFWVPEEIPMHEDKKQ 65
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
++ L+ E+ + L F + +S N ++ R+++ PE L Q F+EA+H
Sbjct: 66 YEK--DLSPYEKRAYEMVLSFLIALDSYQVN-MLKEFARYITAPELVMALTSQEFQEALH 122
Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
S+++Q+I+ S+ + E++N +R+ + + Q + +E
Sbjct: 123 SYSYQFILESVVEPQVADEIYNYWRQDTVLMERNQVIAQLYNEFI--------RHPTEEN 174
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
V E ++FY+GFA +LGR KM +Q +YI RDE H+ ++I I
Sbjct: 175 FIKATFGNYVLESLYFYSGFAFFYTLGRQGKMRNTVQQIKYINRDELTHVTLFRNIIQTI 234
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K ENP L+T E ++ AT EI + +G+N ++Y++++AN R
Sbjct: 235 KQENPELFTPELEKWVYEFFKYATDAEIKWGQYVTQNQILGINNTLIDRYIKYLANLRLT 294
Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKW 351
Q+G +PL+ TENP W+ + + + +FF+ + Y + +ELKW
Sbjct: 295 QLGYKPLYPEITENPMKWIDQFRTINDTKTDFFQAKPQTYAKRSELKW 342
>gi|62421216|gb|AAX82336.1| ribonucleotide reductase small chain [Orange-spotted grouper
iridovirus]
Length = 312
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 88/322 (27%), Positives = 147/322 (45%), Gaps = 28/322 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
D L P W Y A + W EV + D+ W + LT+ ER + L FF
Sbjct: 2 DRYVLRP-NDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TDKLTEAERRFMSHILAFF 58
Query: 90 ASSESLVANNIVLAIYRHL-SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146
A ++ +V +N+V + L PE R + Q E +H+ + +I +L E + LF
Sbjct: 59 AMADGIVGDNLVCNFAKELDHIPEARAFYGFQVAIENIHAEMYTQLIITLVAKENQAALF 118
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
+ ++P + AKA WA Q+ P + + + EG+ F FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNATHKP-------------IATRLLAFAAVEGVMFSGSFA 165
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
I L + + M G+A + I RDE LH +F + Q+ + Q + ++
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMANK-------PCQDDAHEIIS 218
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
+A +E A+ E + +G+N+ S + Y+QF+A+R +G ++ NPF +M
Sbjct: 219 DAVDIETAFFREALKTPLLGMNSDSMKLYIQFVADRLLDALGYAKMYNVG-NPFDFMD-N 276
Query: 327 IDLKKEKNFFETRVTEYQQGAE 348
I ++ + NFFE RV+EYQ+
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGV 298
>gi|299472857|emb|CBN80426.1| EsV-1-128 [Ectocarpus siliculosus]
Length = 419
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 83/337 (24%), Positives = 141/337 (41%), Gaps = 34/337 (10%)
Query: 22 KRMLNARSD--VNQLLP----LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ M D L +Y ++ Y W+ E+ M D W +
Sbjct: 94 EPMCVEEEDFDRFILFNGKTEHEYADVFQLYKKQTALFWVVEEIDMSGDSKDWDDA---S 150
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
DE+ +K L FFAS + +V NI L + P+ RQ+ Q EAVH ++ +I
Sbjct: 151 SDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQIRQHFAIQEATEAVHGESYSLLI 210
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E + + +P I KA WA ++ + L + V
Sbjct: 211 QTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMN-------------PETASLAERLVG 257
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG+ F F I L + K G++ I RDE LH + + ++ + P
Sbjct: 258 FTCLEGVQFSGSFCAIYWLKKRQKFKGLSFANSLIARDEGLHATASVLIYKHLRNKLP-- 315
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
Q++ + A +E + +P +G++ S +Y++F+A+ +Q+G + +
Sbjct: 316 -----QERVHEIFEHAVSVECEFISSALPVALIGISEKSMTEYIKFVADYWLNQLGYDKV 370
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ NPF WM +I L+ + NFFE RV EY + L
Sbjct: 371 YNCA-NPFEWMD-MISLQGKTNFFENRVAEYSKPGVL 405
>gi|303228685|ref|ZP_07315510.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
atypica ACS-134-V-Col7a]
gi|303230495|ref|ZP_07317254.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
atypica ACS-049-V-Sch6]
gi|302514861|gb|EFL56844.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
atypica ACS-049-V-Sch6]
gi|302516665|gb|EFL58582.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella
atypica ACS-134-V-Col7a]
Length = 342
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 87/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)
Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER
Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
+ + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++
Sbjct: 75 DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++++ +R ++ + + Q S D + L + + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R KM + ++YI RDE HL ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
M+ + EIA+ +GLN E+Y++++AN R IGL L+ +NP
Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
W+ +L + +FFE +VT Y + A +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|50288235|ref|XP_446546.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525854|emb|CAG59473.1| unnamed protein product [Candida glabrata]
Length = 335
Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 73/334 (21%), Positives = 140/334 (41%), Gaps = 28/334 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +L + P+KY W Y W ++ + D+ W++ L+ ++
Sbjct: 6 KDEVLLMENKRRFVMFPIKYHEIWAAYKKVEAAFWTAEDMELAKDVKDWET---LSAGQK 62
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
L + ++++V NIV L NPE + + Q E ++ + ++ +L
Sbjct: 63 EFFGNYLAICSRTDNIVNKNIVEKFSAELQNPEGKSFYGFQIMMENIYDEIYSMLVDALF 122
Query: 140 L--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D LF + + AK+ WA ++ D+ + V E
Sbjct: 123 TSVDNIPLFKAVCQQEEVKAKSEWAHRW-------------VFDDESLYAERLVASAARE 169
Query: 198 GMWFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
G++ FA + L + M G+A +I RD + +F + +K TK
Sbjct: 170 GIFMSGAFAALYWLTKEKGIMPGVAMATNHICRDRGFYADFACLLFAHLK-------TKP 222
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ ++ EA +E A+ +MP +G++ +QY++ +A++ G E + T
Sbjct: 223 NPKIIEQIITEAVEIEKAHYRNSMPIEKLGMDLKEIDQYIESVADKLLVSFGNEKFYNAT 282
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPFP+M E + + NFFE +V++YQ+ +
Sbjct: 283 -NPFPFMEEATSI-GKTNFFEKKVSDYQKASATS 314
>gi|238018468|ref|ZP_04598894.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748]
gi|237864939|gb|EEP66229.1| hypothetical protein VEIDISOL_00295 [Veillonella dispar ATCC 17748]
Length = 342
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 87/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)
Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER
Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
+ + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++
Sbjct: 75 DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++++ +R ++ + + Q S D + L + + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R KM + ++YI RDE HL ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
M+ + EIA+ +GLN E+Y++++AN R IGL L+ +NP
Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
W+ +L + +FFE +VT Y + A +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|269798663|ref|YP_003312563.1| ribonucleotide reductase [Veillonella parvula DSM 2008]
gi|294792661|ref|ZP_06757808.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
6_1_27]
gi|269095292|gb|ACZ25283.1| ribonucleotide reductase [Veillonella parvula DSM 2008]
gi|294456560|gb|EFG24923.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
6_1_27]
Length = 342
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 87/334 (26%), Positives = 164/334 (49%), Gaps = 17/334 (5%)
Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER
Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
+ + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++
Sbjct: 75 DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++++ +R ++ + + Q S D + L + + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R KM + ++YI RDE HL ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
M+ + EIA+ +GLN E+Y++++AN R IGL L+ +NP
Sbjct: 246 ITDMIRQGAENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
W+ +L + +FFE +VT Y + A +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|294794440|ref|ZP_06759576.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
3_1_44]
gi|294454770|gb|EFG23143.1| ribonucleoside-diphosphate reductase, beta subunit [Veillonella sp.
3_1_44]
Length = 342
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 88/334 (26%), Positives = 165/334 (49%), Gaps = 17/334 (5%)
Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
M+ + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER
Sbjct: 18 MIGGNTTNLREWNRIKYDWANQMYRTMLNNFWIPEEISLNEDVKQF---PYLTDYERRAF 74
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
+ + F +S+ + N+ + R+++ E L QAF+E +H+ ++ YI+ ++
Sbjct: 75 DKIIAFLNFLDSIQSENLP-NLSRYITASEVASLLNIQAFQEEIHAQSYSYILDTVTNPI 133
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++++ +R ++ + + Q S D + L + + EG++
Sbjct: 134 TRDKIYDEWRTDKTLLERNRFIADAYQRFSD--------DPSEANLIHTIIANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R KM + ++YI RDE HL ++I +++ E P L+T E + K
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIRELRRERPDLFTPELEAK 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
M+ + T EIA+ +GLN E+Y++++AN R IGL L+ +NP
Sbjct: 246 ITDMIRQGTENEIAWGQYITDDKILGLNNVLIERYIKYLANIRLEAIGLPHLYPEIKDNP 305
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
W+ +L + +FFE +VT Y + A +D
Sbjct: 306 MEWIESFSNLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|13242599|ref|NP_077613.1| EsV-1-128 [Ectocarpus siliculosus virus 1]
gi|13177402|gb|AAK14546.1|AF204951_128 EsV-1-128 [Ectocarpus siliculosus virus 1]
Length = 419
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 82/337 (24%), Positives = 141/337 (41%), Gaps = 34/337 (10%)
Query: 22 KRMLNARSD--VNQLLP----LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ M D L +Y ++ Y W+ E+ + D W+ +
Sbjct: 94 EPMCVEEEDFDRFILFNGKTEHEYADVFQLYKKQTALFWVVEEIDLSGDSKDWEDA---S 150
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
DE+ +K L FFAS + +V NI L + P+ RQ+ Q EAVH ++ +I
Sbjct: 151 SDEKHFLKLVLAFFASLDQIVMENIGLNFKNEIVIPQIRQHFAIQEATEAVHGESYSLLI 210
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E + + +P I KA WA ++ + L + V
Sbjct: 211 QTYFRDTEEQRHVMRSIQTMPIIEKKALWAEKWMN-------------PETASLAERLVG 257
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG+ F F I L + K G++ I RDE LH + + +K P
Sbjct: 258 FTCLEGVQFSGSFCAIYWLKKRQKFKGLSFANSLIARDEGLHATASVLIYKHLKNRLP-- 315
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+++ + A +E + +P +G++ S +Y++F+A+ +Q+G + +
Sbjct: 316 -----RERVHEIFKHAVSVECEFISSALPVALIGISEKSMTEYIKFVADYWLNQLGYDKV 370
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+ NPF WM +I L+ + NFFE RV EY + L
Sbjct: 371 YNCA-NPFEWMD-MISLQGKTNFFENRVAEYSKPGVL 405
>gi|303258316|ref|ZP_07344319.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales
bacterium 1_1_47]
gi|302858762|gb|EFL81850.1| ribonucleoside-diphosphate reductase, beta subunit [Burkholderiales
bacterium 1_1_47]
Length = 328
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 87/326 (26%), Positives = 151/326 (46%), Gaps = 20/326 (6%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
N P Y WA++ ++++ HW+ TEVPM +D+ WK N LTD ER + + FF
Sbjct: 9 SRNYYKPFSYPWAYDAFMASEQMHWLWTEVPMIEDIKDWK--NVLTDGERDFLTKVFRFF 66
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
+ V++ V PE R L A EAVH + ++I ++G+ E ++N +
Sbjct: 67 TQGDIDVSSAYVNTYLPFFPTPEIRMMLSSFAAREAVHIAAYSHLIETIGMPET-VYNEF 125
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+ ++ K ++ F +D + + F EGM ++ F +L
Sbjct: 126 LQYEAMAEKHDF------------FHGLAEDQQENIAVKMAAFSAFTEGMQLFSSFVMLL 173
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ R M G+ + + + DE+LH I + + IENP LWT +++ + +
Sbjct: 174 NFTRNGTMKGMGQIIAWSINDETLHTESMIRLFREYIIENPELWTDSLKKRIYDIAEKMI 233
Query: 270 LLEIAYAHETMPKGFV---GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
LE A+ + L+ + Y+++I +RR +G++ +FK NP PW+ +
Sbjct: 234 ELEDAFIDLAFGVNDMSKQNLSPADVKAYIRWICDRRLAAMGMKEIFKVNVNPLPWVDSM 293
Query: 327 IDLKKEKNFFETRVTEYQQGA-ELKW 351
+ NFFE RV +Y +GA W
Sbjct: 294 L-GVTHTNFFENRVVDYAKGALSGSW 318
>gi|253582918|ref|ZP_04860136.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
varium ATCC 27725]
gi|251835124|gb|EES63667.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
varium ATCC 27725]
Length = 348
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 89/361 (24%), Positives = 167/361 (46%), Gaps = 24/361 (6%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M + ++ +R++ +++ L +KY WA + Y + N W+P ++
Sbjct: 1 MKAAVDRKKLFNPLGDDSLSKRRIIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKI 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D +K LTD E+ L F +S+ NNI + +++ PE L
Sbjct: 61 DLTQDKNDYK---NLTDQEKEAYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
Q F+EA+HS ++QYII S+ E +++ +RE + + + + Q
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKEIRNSIYDKWREDKILFERNKYIAEMYQRFL------- 169
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
++ + E + V + E ++FY GF L N+M+G ++ + I RDE H+
Sbjct: 170 -ENPNDENFSKVIVADYLLEAIYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVI 228
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
++ +I+ ENP + E + M +A EI + + + +G+ + EQY +
Sbjct: 229 FQHLLKEIRNENPDFFNDE---EIYDMFRKAVEQEINWTNHIIGNQILGITEETTEQYTK 285
Query: 298 FIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-W 351
++AN R IGL+P++ +NP+ +++ D + + NFFE VT Y + + W
Sbjct: 286 WLANERLRSIGLKPIYDGFNKNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGW 345
Query: 352 D 352
D
Sbjct: 346 D 346
>gi|226950223|ref|YP_002805314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum A2 str. Kyoto]
gi|226843961|gb|ACO86627.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum A2 str. Kyoto]
Length = 342
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 86/334 (25%), Positives = 167/334 (50%), Gaps = 13/334 (3%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER
Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++
Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ R+ + + L + + K+ + + + + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R KM + ++YI RDE HL ++I ++K ENPH++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENPHIFTEELEEE 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
R M+ EI + +GLN E+Y+++++N R IGL+PL+ + ++P
Sbjct: 246 FRQMMRIGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYLEINKHP 305
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
W+ L + +FFE +VT Y + A +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|257468678|ref|ZP_05632772.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
ulcerans ATCC 49185]
Length = 348
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 87/361 (24%), Positives = 169/361 (46%), Gaps = 24/361 (6%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M + ++ +R++ +++ L +KY WA + Y + N W+P ++
Sbjct: 1 MKAVVDRKKLFNPLGDDSLSKRRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKI 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D +K LTD E+ L F +S+ NNI + +++ PE L
Sbjct: 61 DLTQDKNDYK---NLTDQEKEAYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
Q F+EA+HS ++QYII S+ E +++ +RE + + + + Q
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKEIRNSIYDKWREDKILFERNKYIAEMYQKFL------- 169
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
++ + + + + + E ++FY GF L N+M+G ++ + I RDE H+
Sbjct: 170 -EEPNDKNFSKVIIADYLLEAIYFYNGFNFFYLLASRNRMMGTSDVIRLINRDELSHVVI 228
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
++ +I+ ENP + E + +M +A EI + + + +G+ + EQY +
Sbjct: 229 FQHLLKEIRNENPDFFNDE---EIYSMFRKAVEQEINWTNHIIGNQILGITEETTEQYTK 285
Query: 298 FIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-W 351
++AN R IGL+P+++ +NP+ +++ D + + NFFE VT Y + + W
Sbjct: 286 WLANERLRSIGLKPIYEGFNKNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGW 345
Query: 352 D 352
D
Sbjct: 346 D 346
>gi|289548460|ref|YP_003473448.1| ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484]
gi|289182077|gb|ADC89321.1| Ribonucleoside-diphosphate reductase [Thermocrinis albus DSM 14484]
Length = 342
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 170/348 (48%), Gaps = 17/348 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSA-CNNHWMPTEVPMQDDLAL 67
I E +R++ ++ +L +KY WA++ Y + N W+P E+ M +D
Sbjct: 6 IFNPEGDREASKRRIIKGNPTNIMELNNVKYQWAFDLYKTMGFTNFWIPEEISMMEDRKQ 65
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
++ L+ E+ + L F + +S N ++ R L+ PE + Q F+EA+H
Sbjct: 66 YE--RVLSAHEKRAYEMVLSFLIALDSYQVN-MLKEFARFLTAPELTMAITAQEFQEALH 122
Query: 128 SHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
S+++Q+I+ S+ E++N +RE + + + + + + D+E
Sbjct: 123 SYSYQFILESVVDPVKADEIYNYWREDKVLMER--------NRVIADLYNDFVRKQDEET 174
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
V E ++FY+GFA +LGR KM+ +Q +YI RDE H++ ++I +
Sbjct: 175 FLKAVFGNYVLESLYFYSGFAFFYTLGRQGKMLSTVQQIKYINRDELTHVSLFRNIILTL 234
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K ENP L+T E ++ + A EI + +G+N ++Y++++AN R
Sbjct: 235 KKENPELFTPEMEKWVKEFFRYAASEEIKWGQYVTRNQILGINDQLIDRYIKYLANLRLT 294
Query: 306 QIGLEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKW 351
QIG EP+F TENP W+ + + +FF+ + Y + +ELKW
Sbjct: 295 QIGYEPVFPDVTENPMKWIDTFRTINDTKTDFFQAKPQTYAKRSELKW 342
>gi|160947324|ref|ZP_02094491.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270]
gi|158446458|gb|EDP23453.1| hypothetical protein PEPMIC_01258 [Parvimonas micra ATCC 33270]
Length = 349
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 87/350 (24%), Positives = 158/350 (45%), Gaps = 15/350 (4%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+ + + ++M+N + ++N +KY W E Y +A NN W+P E+ + DL
Sbjct: 6 KALFNENGDIELSKRKMINGNTTNLNDFNNVKYTWTTEWYRNAMNNFWIPEEINLFQDLK 65
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+K L + E+ + L F +S+ N+ I +++ E L QA++EA+
Sbjct: 66 DYK---ILDEYEKTAFDKVLSFLIFLDSIQTANLP-YIGEYITANEINLCLTIQAYQEAI 121
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ Y++ S+ E R + + L + + D L
Sbjct: 122 HSQSYGYMLDSICSPEE------RTNILYQWRDDEHLLARNKFIGDLYNEFQVNKDPYSL 175
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
V + EG++FY+GF +LGR KM G ++ +YI RDE+ HL ++ +++
Sbjct: 176 VKTMVANYILEGVYFYSGFMFFYNLGRNGKMPGSVQEIRYINRDENTHLWLFKKMLLELQ 235
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E P L+T+E + M+ EIA+ + + GL E Y++++ N R
Sbjct: 236 NEEPELFTEEKVAVYKDMIKTGVEQEIAWGKYVLGENIPGLTIQMVEDYIKYLGNLRSTA 295
Query: 307 IGLEPLFK-YTENP--FPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+ L+ Y E P W+SE D + +FFE + + Y + + + D
Sbjct: 296 LNFGKLYDGYDEEPESMKWVSEYSDPNAIKTDFFEAKPSAYSKSSVIDDD 345
>gi|168179222|ref|ZP_02613886.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum NCTC 2916]
gi|182669722|gb|EDT81698.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum NCTC 2916]
Length = 342
Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats.
Identities = 84/334 (25%), Positives = 165/334 (49%), Gaps = 13/334 (3%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER
Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++
Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ R+ + + L + + K+ + + + + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R K+ + ++YI RDE HL ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKLTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
R M+ EI + +GLN E+Y+++++N R IGL+PL+ ++P
Sbjct: 246 FRQMMRIGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYPEINKHP 305
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
W+ L + +FFE +VT Y + A +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|255323570|ref|ZP_05364700.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
showae RM3277]
gi|255299284|gb|EET78571.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
showae RM3277]
Length = 340
Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats.
Identities = 92/349 (26%), Positives = 155/349 (44%), Gaps = 13/349 (3%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I N+ D+R+ N + KY WA + + N W P EV DD
Sbjct: 2 NRKRIYNPSSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ + LT E+ M S +S NN+ I +++ PE L RQA+EE
Sbjct: 62 VRDYA--YNLTQAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEE 119
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A HS ++ ++ ++ + ++ M + + K ++ + L+
Sbjct: 120 ANHSKSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAGEVTDEKL------ 173
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN
Sbjct: 174 --LLAMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINS 231
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E P L+T E + K M A LEI + +G EQY++++ ++R
Sbjct: 232 VRTERPDLFTPETEAKIYDMFERAGELEIKWGKYITQNQIMGFTDDIIEQYIRYLIDQRL 291
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
IGL+ + +P W+ + ++ NFFE +VT Y +G+ D
Sbjct: 292 VAIGLKRRYNV-PHPIKWVDDFAKFNDQKSNFFEAKVTNYSKGSISFDD 339
>gi|19881429|ref|NP_612246.1| putative ribonucleotide reductase small subunit [Infectious spleen
and kidney necrosis virus]
gi|19773634|gb|AAL98748.1|AF371960_24 putative ribonucleotide reductase small subunit [infectious spleen
and kidney necrosis virus]
Length = 312
Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats.
Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 28/322 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
D L P W Y A + W EV + D+ W LT+ ER + L FF
Sbjct: 2 DKYVLRP-SDPHLWAMYKKAVASFWTVEEVDLSTDVRHW--TEKLTEAERRFMSHILAFF 58
Query: 90 ASSESLVANNIVLAIYRHLS-NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LF 146
A ++ +V +N+V + L PE R + Q E +H+ + +I +L E + LF
Sbjct: 59 AMADGIVGDNLVCNFAKELDYIPEARAFYGFQVAMENIHAEMYTQLIITLVAKENQAALF 118
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
+ ++P + AKA WA Q+ + + + + EG+ F FA
Sbjct: 119 SAAEDMPCVKAKAQWAAQWLNA-------------THKSIATRLLAFAAVEGVMFSGSFA 165
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
I L + + M G+A + I RDE LH +F + Q+ K Q + ++
Sbjct: 166 AIFWLKKRSLMPGLAFSNELISRDEGLHCDFACMLFRQMAN-------KPCQDDAHQIIS 218
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
+A +E A+ E + +G+N+ S Y+QF+A+R +G ++ NPF +M
Sbjct: 219 DAVDIETAFFQEALKTPLLGMNSDSMRLYIQFVADRLLDALGYAKMYNVA-NPFDFMD-N 276
Query: 327 IDLKKEKNFFETRVTEYQQGAE 348
I ++ + NFFE RV+EYQ+
Sbjct: 277 ISIEGKTNFFERRVSEYQRMGV 298
>gi|256027986|ref|ZP_05441820.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp.
D11]
Length = 348
Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats.
Identities = 88/358 (24%), Positives = 163/358 (45%), Gaps = 23/358 (6%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M + E ++ ++++ +++ L ++Y WA + Y + N W+P +V
Sbjct: 1 MKVVVDRKKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D ++ LT ER L F +S+ NNI I H++ PE L
Sbjct: 61 DLTQDKNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
Q F+EA+HS ++QYII S+ + +++ +R+ + + ++ + Q
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID------ 170
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
+ E + + + E ++FY GF L NKMVG ++ + I RDE H+
Sbjct: 171 --EQSDENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVL 228
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
++ +IK + P+ ++ E +M A EIA+ + +G+ + + E Y +
Sbjct: 229 FRSIVKEIKNDFPNFFSAET---VYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTK 285
Query: 298 FIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
++AN R +GLEPLF + +NP+ + D + + NFFE VT Y + +
Sbjct: 286 WLANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343
>gi|323143005|ref|ZP_08077711.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas
hippei YIT 12066]
gi|322417199|gb|EFY07827.1| ribonucleoside-diphosphate reductase, beta subunit [Succinatimonas
hippei YIT 12066]
Length = 331
Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats.
Identities = 81/324 (25%), Positives = 147/324 (45%), Gaps = 18/324 (5%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ P Y WA+E ++ + HW+ TEVPM +D+ WK L D+ER + + FF
Sbjct: 16 SRDYYKPFVYPWAYEAFMQSEQMHWLWTEVPMVEDVKDWK--MRLNDNERDFLTKVFRFF 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
+ V++ V PE R L A EAVH + ++I ++G+ + ++N +
Sbjct: 74 TQGDIDVSSAYVHTYLPAFPQPEIRMMLSSFAAREAVHIAAYSHLIETIGMPDA-IYNEF 132
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+ ++ AK + F + ++ + F EGM ++ F +L
Sbjct: 133 LQYEAMAAKHEF------------FHGLRLNQNENIAAKMAAFSAFTEGMQLFSSFVMLL 180
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ R M G+ + + + DE+LH I + + +NP LW + + ++ +
Sbjct: 181 NFTRNGTMRGMGQIIAWSINDETLHTESMIKLFREYIEQNPQLWNDDLKSTIYSIAEKMV 240
Query: 270 LLEIAYAHETMP-KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
LE ++ L ++Y++FIA+RR +G++ +F +NP PW+ ++
Sbjct: 241 ELEDSFIDLAFGVNQMQKLAKEDVKKYIRFIADRRLSAMGMKAIFNEKKNPLPWVDAML- 299
Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
NFFE RV +Y +GA W
Sbjct: 300 GVTHTNFFENRVVDYAKGALSGDW 323
>gi|209170936|ref|YP_002268082.1| agip52 [Agrotis ipsilon multiple nucleopolyhedrovirus]
gi|208436527|gb|ACI28754.1| ribonucleotide reductase-2B [Agrotis ipsilon multiple
nucleopolyhedrovirus]
Length = 313
Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats.
Identities = 94/324 (29%), Positives = 148/324 (45%), Gaps = 26/324 (8%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
L P+ + W Y A + W EV M D ++S L DDER IK L FFA
Sbjct: 5 RKVLKPILHDDLWAAYKQAFDCMWKVEEVDMSRDYDDFES--KLNDDERYFIKHVLAFFA 62
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
+++S+V N++ + R++ E + + Q E VH+ + +I L DE E L N
Sbjct: 63 AADSIVNINLIEYMQRNVPELEAQYFYNLQVLIECVHTEMYNLLIEQLIKDEHERDTLLN 122
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ VP + KA WA+++ ++ D L + V + + EG++F FA
Sbjct: 123 AFEHVPCVRKKAQWAMKWIES-------------DTATLAERMVAFAIVEGVFFSGSFAA 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
I + M G+ + I RDE LH +F E K +M E
Sbjct: 170 IFYIKTKGIMPGLTFSNELISRDEGLHTDFACLYYKTRVTE------KLDSDTILSMFKE 223
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
A +E + +P +G+NA S +Y++F+A+R Q+G F NPF +M+ I
Sbjct: 224 AVAIEKEFFTAALPVELLGMNAQSMCEYIEFVADRLLVQLGQPKYFN-ARNPFEFMN-NI 281
Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
L+ + NFFE RV EY++ +
Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGED 305
>gi|168184457|ref|ZP_02619121.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum Bf]
gi|237796249|ref|YP_002863801.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
botulinum Ba4 str. 657]
gi|182672468|gb|EDT84429.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum Bf]
gi|229263158|gb|ACQ54191.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum Ba4 str. 657]
Length = 342
Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats.
Identities = 85/334 (25%), Positives = 166/334 (49%), Gaps = 13/334 (3%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER
Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++
Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ R+ + + L + + K+ + + + + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRVIMANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R KM + ++YI RDE HL ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
R M+ EI + +GLN E+Y+++++N R IGL+PL+ + ++P
Sbjct: 246 FRQMMRIGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYLEINKHP 305
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
W+ L + +FFE +VT Y + A +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|153940168|ref|YP_001392091.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum F str. Langeland]
gi|170756361|ref|YP_001782419.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum B1 str. Okra]
gi|152936064|gb|ABS41562.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum F str. Langeland]
gi|169121573|gb|ACA45409.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum B1 str. Okra]
gi|322807123|emb|CBZ04697.1| ribonucleotide reductase of class Ia (aerobic),beta subunit
[Clostridium botulinum H04402 065]
Length = 342
Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats.
Identities = 85/334 (25%), Positives = 164/334 (49%), Gaps = 13/334 (3%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER
Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++
Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ R+ + + L + + K+ + + + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R KM + ++YI RDE HL ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
R M+ EI + +GLN E+Y+++++N R IGL+PL+ ++P
Sbjct: 246 FRQMMRMGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYPEINKHP 305
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
W+ L + +FFE +VT Y + A +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|317062933|ref|ZP_07927418.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
ulcerans ATCC 49185]
gi|313688609|gb|EFS25444.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
ulcerans ATCC 49185]
Length = 353
Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats.
Identities = 86/360 (23%), Positives = 168/360 (46%), Gaps = 24/360 (6%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ ++ +R++ +++ L +KY WA + Y + N W+P ++
Sbjct: 7 KAVVDRKKLFNPLGDDSLSKRRVIKGDSTNIFNLNNVKYQWANQLYRTMMGNFWIPEKID 66
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ D +K LTD E+ L F +S+ NNI + +++ PE L Q
Sbjct: 67 LTQDKNDYK---NLTDQEKEAYDGILSFLIFLDSIQTNNIP-NVCDYITAPEINLILSIQ 122
Query: 121 AFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
F+EA+HS ++QYII S+ E +++ +RE + + + + Q
Sbjct: 123 TFQEAIHSQSYQYIIESILPKEIRNSIYDKWREDKILFERNKYIAEMYQKFL-------- 174
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
++ + + + + + E ++FY GF L N+M+G ++ + I RDE H+
Sbjct: 175 EEPNDKNFSKVIIADYLLEAIYFYNGFNFFYLLASRNRMMGTSDVIRLINRDELSHVVIF 234
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
++ +I+ ENP + E + +M +A EI + + + +G+ + EQY ++
Sbjct: 235 QHLLKEIRNENPDFFNDE---EIYSMFRKAVEQEINWTNHIIGNQILGITEETTEQYTKW 291
Query: 299 IANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
+AN R IGL+P+++ +NP+ +++ D + + NFFE VT Y + + WD
Sbjct: 292 LANERLRSIGLKPIYEGFNKNPYKHLTKFADTEGEGNVKANFFEGTVTSYNMSSSIDGWD 351
>gi|88682973|gb|AAI05512.1| RRM2 protein [Bos taurus]
Length = 338
Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats.
Identities = 85/308 (27%), Positives = 141/308 (45%), Gaps = 29/308 (9%)
Query: 47 LSACNNHWMPTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+A P+E V + D+ W+ L +ER I L FFA+S+ +V N+V
Sbjct: 43 KTARRIFQEPSEPVDLSKDIQHWE---ALKSEERYFISHVLAFFAASDGIVNENLVERFS 99
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
+ + E R + Q E +HS + +I + D E LFN +P + KA+WA
Sbjct: 100 QEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWA 159
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
L++ + V + EG++F FA I L + M G+
Sbjct: 160 LRWIG-------------DKAATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTF 206
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
+ I RDE LH +F + + K +Q+ + ++ A +E + E +P
Sbjct: 207 SNELISRDEGLHCDFACLMFKHLL-------HKPSEQRVKEIIVNAVRIEQEFLTEALPV 259
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
+G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV E
Sbjct: 260 KLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV-ENPFDFM-ENISLEGKTNFFEKRVGE 317
Query: 343 YQQGAELK 350
YQ+ +
Sbjct: 318 YQRMGVMS 325
>gi|76630263|ref|XP_880783.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 3 [Bos
taurus]
gi|297480612|ref|XP_002691528.1| PREDICTED: ribonucleotide reductase M2 polypeptide isoform 2 [Bos
taurus]
gi|296482362|gb|DAA24477.1| ribonucleotide reductase M2 polypeptide isoform 2 [Bos taurus]
Length = 341
Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats.
Identities = 85/308 (27%), Positives = 141/308 (45%), Gaps = 29/308 (9%)
Query: 47 LSACNNHWMPTE-VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+A P+E V + D+ W+ L +ER I L FFA+S+ +V N+V
Sbjct: 46 KTARRIFQEPSEPVDLSKDIQHWE---ALKSEERYFISHVLAFFAASDGIVNENLVERFS 102
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWA 162
+ + E R + Q E +HS + +I + D E LFN +P + KA+WA
Sbjct: 103 QEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWA 162
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
L++ + V + EG++F FA I L + M G+
Sbjct: 163 LRWIG-------------DKAATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTF 209
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
+ I RDE LH +F + + K +Q+ + ++ A +E + E +P
Sbjct: 210 SNELISRDEGLHCDFACLMFKHLL-------HKPSEQRVKEIIVNAVRIEQEFLTEALPV 262
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
+G+N +QY++F+A+R ++G +F+ ENPF +M E I L+ + NFFE RV E
Sbjct: 263 KLIGMNCTLMKQYIEFVADRLMLELGFSKVFRV-ENPFDFM-ENISLEGKTNFFEKRVGE 320
Query: 343 YQQGAELK 350
YQ+ +
Sbjct: 321 YQRMGVMS 328
>gi|170761039|ref|YP_001788131.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum A3 str. Loch Maree]
gi|169408028|gb|ACA56439.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum A3 str. Loch Maree]
Length = 342
Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats.
Identities = 85/334 (25%), Positives = 164/334 (49%), Gaps = 13/334 (3%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER
Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++
Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ R+ + + L + + K+ + + + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R KM + ++YI RDE HL ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENSHIFTEELEEE 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
R M+ EI + +GLN E+Y+++++N R IGL+PL+ ++P
Sbjct: 246 FRQMMRMGVEHEIQWGQYVTNNEILGLNDELIERYIKYLSNLRLVAIGLKPLYPEINKHP 305
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
W+ L + +FFE +VT Y + A +D
Sbjct: 306 MEWIDGFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|19703451|ref|NP_603013.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|19713529|gb|AAL94312.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 348
Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats.
Identities = 87/358 (24%), Positives = 162/358 (45%), Gaps = 23/358 (6%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M + E ++ ++++ +++ L ++Y WA + Y + N W+P +V
Sbjct: 1 MKAAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D ++ LT ER L F +S+ NNI I H++ PE L
Sbjct: 61 DLTQDKNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
Q F+EA+HS ++QYII S+ + +++ +R+ + + ++ + Q
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID------ 170
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
+ E + + + E ++FY GF L NKMVG ++ + I RDE H+
Sbjct: 171 --EQSDENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVL 228
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
++ +IK + P+ ++ E +M A EI + + +G+ + + E Y +
Sbjct: 229 FRSMVKEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTK 285
Query: 298 FIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
++AN R +GLEPLF + +NP+ + D + + NFFE VT Y + +
Sbjct: 286 WLANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343
>gi|296329016|ref|ZP_06871523.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|296153909|gb|EFG94720.1| ribonucleotide-diphosphate reductase beta subunit [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 348
Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats.
Identities = 87/358 (24%), Positives = 162/358 (45%), Gaps = 23/358 (6%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M + E ++ ++++ +++ L ++Y WA + Y + N W+P +V
Sbjct: 1 MKAAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D ++ LT ER L F +S+ NNI I H++ PE L
Sbjct: 61 DLTQDKNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
Q F+EA+HS ++QYII S+ + +++ +R+ + + ++ + Q
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID------ 170
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
+ E + + + E ++FY GF L NKMVG ++ + I RDE H+
Sbjct: 171 --EQSDENFAKIIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVL 228
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
++ +IK + P+ ++ E +M A EI + + +G+ + + E Y +
Sbjct: 229 FRSMVKEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTK 285
Query: 298 FIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
++AN R +GLEPLF + +NP+ + D + + NFFE VT Y + +
Sbjct: 286 WLANERLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343
>gi|90592764|ref|YP_529717.1| RR2B [Agrotis segetum nucleopolyhedrovirus]
gi|71559214|gb|AAZ38213.1| RR2B [Agrotis segetum nucleopolyhedrovirus]
Length = 313
Score = 208 bits (529), Expect = 9e-52, Method: Composition-based stats.
Identities = 86/324 (26%), Positives = 145/324 (44%), Gaps = 26/324 (8%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
L P+++ W Y A + W EV + D + + L DDER IK L FFA
Sbjct: 5 RKVLFPIQHNDLWRAYKQALDCMWKVEEVDLSKDCDDF--TSKLNDDERYFIKHVLAFFA 62
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
+++S+V N++ + +++ E + + +Q E VH+ + +I L DE E L N
Sbjct: 63 AADSIVNINLIEYMQQNVPELEAQYFYNQQVLIECVHTEMYNLLIHQLISDEHERDTLLN 122
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ +P + K +WA+++ + + V + + EG++F FA
Sbjct: 123 AFERMPCVRKKTDWAMKWINS-------------STATFAERMVAFAIVEGVFFSGSFAA 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
I + M G+ + I RDE LH +F N + K +M E
Sbjct: 170 IFYIKTKGIMPGLTFSNELISRDEGLHTDFACLYYNTRVHD------KLAPDTVLSMFKE 223
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
A +E + +P +G+NA S Y++F+A+R Q+ F + NPF +M+ I
Sbjct: 224 AVAIEKEFFTAALPAALLGMNAQSMCDYIEFVADRLLVQLHQPKHF-HARNPFEFMN-NI 281
Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
L+ + NFFE RV EY++
Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGDD 305
>gi|215401283|ref|YP_002332587.1| ribonucleotide reductase small subunit [Helicoverpa armigera
multiple nucleopolyhedrovirus]
gi|198448783|gb|ACH88573.1| ribonucleotide reductase small subunit [Helicoverpa armigera
multiple nucleopolyhedrovirus]
Length = 313
Score = 208 bits (529), Expect = 9e-52, Method: Composition-based stats.
Identities = 84/324 (25%), Positives = 146/324 (45%), Gaps = 26/324 (8%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
L P+ + +E Y A W EV + D ++ L +D+R I LGFF+
Sbjct: 5 RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
+++S+V N++ + + + E + QA E VH+ + +I +L D+ + + N
Sbjct: 63 AADSIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILN 122
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ +P + K +WAL++ TK+ + L + + EG++F FA
Sbjct: 123 AFDNIPCVRKKDDWALKW------------TKNKKLTLAERLVA-FAIVEGVFFSGSFAA 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
I + M G+ + I RDE +H +F N E K + M E
Sbjct: 170 IFYIKTLGIMPGLTFSNELISRDEGMHTDFACLYYNTRVNE------KLSYETILDMFKE 223
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
A +E + + +P +G+NA +Y++F+A+R Q+G + NPFP+M+ I
Sbjct: 224 AVDIEKEFFTDALPVALLGMNADMMCEYIEFVADRLLLQLGQPKYYN-ARNPFPFMN-NI 281
Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
L+ + NFFE RV EY+
Sbjct: 282 SLEGKTNFFERRVGEYKMFGTGSD 305
>gi|229827460|ref|ZP_04453529.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC
49176]
gi|229788398|gb|EEP24512.1| hypothetical protein GCWU000182_02849 [Abiotrophia defectiva ATCC
49176]
Length = 354
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 91/357 (25%), Positives = 169/357 (47%), Gaps = 19/357 (5%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M + I + + +LN + ++ + +KY WA Y + NN W+P E+
Sbjct: 9 METDMEKKKIFNELGKRGT--EGILNGNTTNLREWNRIKYDWANVMYRTMLNNFWIPEEI 66
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ +D+ + + LT ER + + F +S+ N+ + R+++ E L
Sbjct: 67 SLGEDIKQF---SYLTAGERKAFDKIISFLNFLDSIQCENLP-NLARYITAAEVASLLNV 122
Query: 120 QAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
QAF+E +H+ ++ YI+ ++ ++++ +RE P + + + Q +
Sbjct: 123 QAFQEEIHAQSYSYILDTVTNPVTRDKIYDEWREDPILLRRNKFIADMYQRFAD------ 176
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
D E + + EG++FY+GF+ +L R KM + ++YI RDE HL
Sbjct: 177 --DPSTENFVRSVMANYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLVL 234
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
++I ++ ENP ++T E + + R M+ TL EI + +G+N E+Y++
Sbjct: 235 FQNIIRELMKENPEIFTDELKGELREMVKVGTLNEIEWGQYVTNNEILGINNELIERYIK 294
Query: 298 FIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
+++N R IGL F TENP W+ +L + +FFE +VT Y + A +D
Sbjct: 295 YLSNLRLRAIGLPVWFPEITENPMAWIESFSNLNATKTDFFEAKVTNYTKAAAFDFD 351
>gi|157164305|ref|YP_001467763.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
concisus 13826]
gi|112800348|gb|EAT97692.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
concisus 13826]
Length = 340
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 92/349 (26%), Positives = 156/349 (44%), Gaps = 13/349 (3%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I N+ D+R+ N + KY WA + + N W P EV DD
Sbjct: 2 NRKRIYNPSSNENLTDRRVFNGNPHGILNFTKAKYEWALKLWDLMEANTWFPKEVDTTDD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ + LT+ E+ M S +S NN+ I +++ PE L RQA+EE
Sbjct: 62 VRDYA--YNLTEAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEE 119
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A HS ++ ++ ++ + ++ M + + K ++ + L+
Sbjct: 120 ANHSKSYAVMVEAICDNTDLIYEMEKHDDVLREKNDYISSVYEELAGEVTDEKL------ 173
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN
Sbjct: 174 --LLAMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINS 231
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E P L+T E + K M +A LEI + +G EQY+ ++ ++R
Sbjct: 232 VRKERPDLFTPETEAKIYDMFEKAGNLEIKWGKYITQNQIMGFTDDIIEQYIHYLIDQRL 291
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
IGL+ + +P W+ + ++ NFFE +VT Y +G+ D
Sbjct: 292 VAIGLKRKYNVA-HPIKWVDDFAKFNDQKSNFFEAKVTNYSKGSISFDD 339
>gi|291461082|ref|ZP_06026838.2| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
periodonticum ATCC 33693]
gi|291379059|gb|EFE86577.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
periodonticum ATCC 33693]
Length = 348
Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats.
Identities = 86/358 (24%), Positives = 161/358 (44%), Gaps = 23/358 (6%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M + E ++ ++++ +++ L ++Y WA + Y + N W+P +V
Sbjct: 1 MKAVVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D ++ LT ER L F +S+ NNI I H++ PE L
Sbjct: 61 DLTQDKNDYE---NLTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
Q F+EA+HS ++QYII S+ + +++ +R+ + + ++ + Q
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID------ 170
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
+ E + + + E ++FY GF L NKMVG ++ + I RDE H+
Sbjct: 171 --EQSDENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVL 228
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
++ +IK + P ++ E +M A EI + + +G+ + + E Y +
Sbjct: 229 FRSIVKEIKNDYPEFFSAET---IYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTK 285
Query: 298 FIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
++AN R +GLEPL+ + +NP+ + D + + NFFE VT Y + +
Sbjct: 286 WLANERLKSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 343
>gi|22549454|ref|NP_689227.1| putative ribonucleotide reductase small subunit-like protein
[Mamestra configurata NPV-B]
gi|22476633|gb|AAM95039.1| putative ribonucleotide reductase small subunit-like protein
[Mamestra configurata NPV-B]
Length = 313
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 83/324 (25%), Positives = 145/324 (44%), Gaps = 26/324 (8%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
L P+ + +E Y A W EV + D ++ L +D+R I LGFF+
Sbjct: 5 RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
+++S+V N++ + + + E + QA E VH+ + +I +L D+ + + N
Sbjct: 63 AADSIVNINVLDYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIITLIPDKKQQDLILN 122
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ + + K +WAL++ TK+ + L + + EG++F FA
Sbjct: 123 AFDNISCVRKKDDWALKW------------TKNKKLTLAERLVA-FAIVEGVFFSGSFAA 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
I + M G+ + I RDE +H +F N E K + M E
Sbjct: 170 IFYIKTLGIMPGLTFSNELISRDEGMHTDFACLYYNTRVNE------KLSYETILDMFKE 223
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
A +E + + +P +G+NA +Y++F+A+R Q+G + NPFP+M+ I
Sbjct: 224 AVDIEKEFFTDALPVALLGMNADMMCEYIEFVADRLLLQLGQPKYYN-ARNPFPFMN-NI 281
Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
L+ + NFFE RV EY+
Sbjct: 282 SLEGKTNFFERRVGEYKMFGTGSD 305
>gi|417659|sp|P32209|RIR2_SWPVK RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|347472|gb|AAC37857.1| ribonucleotide reductase [Swinepox virus]
Length = 274
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 71/293 (24%), Positives = 125/293 (42%), Gaps = 27/293 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + P+KY W+ Y + + W EV + DL W + LT DE+
Sbjct: 2 EPILQESDSRFVIFPIKYHDIWKMYKQSVASFWTVEEVDLSKDLDDW---DKLTKDEKYF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFASS+ +V N+ Y + E R + Q E +HS + +I + D
Sbjct: 59 IKHILAFFASSDGIVNENLAERFYVDVQCSEARCFYGFQIAMENIHSEMYSLLIDTYVRD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN + + KA+WA ++ + + + V + EG
Sbjct: 119 NIEKMHLFNAIETMECVKKKADWARKWI--------------SSNKVYGERVVAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I + + M G+ + I RDE LH +F + + +
Sbjct: 165 IFFSGSFAAIFWIKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLL-------HPPSK 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+ +++ +A +E + +P +G+N QY++F+A+R ++G E
Sbjct: 218 EVITSIIIDAVNIEKEFLTVAIPVDLIGMNCCLMSQYIEFVADRLLTELGCEK 270
>gi|148380773|ref|YP_001255314.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum A str. ATCC 3502]
gi|153932443|ref|YP_001385057.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum A str. ATCC 19397]
gi|153934989|ref|YP_001388527.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum A str. Hall]
gi|148290257|emb|CAL84376.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
botulinum A str. ATCC 3502]
gi|152928487|gb|ABS33987.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum A str. ATCC 19397]
gi|152930903|gb|ABS36402.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum A str. Hall]
Length = 342
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 85/334 (25%), Positives = 164/334 (49%), Gaps = 13/334 (3%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER
Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDIKQF---PYLTDGERN 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++
Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ R+ + + L + + K+ + + + EG++
Sbjct: 132 P------ITRDKIYDQWREDEHLLERNKFIAGIYEKFNKEPEIHNFLRAIMANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R KM + ++YI RDE HL ++I ++K EN H++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKNENLHIFTEELEEE 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
R M+ EI + +GLN E+Y+++++N R IGL+PL+ ++P
Sbjct: 246 FRQMMRMGVEHEIQWGQYVTNNEILGLNDELIEKYIKYLSNLRLVAIGLKPLYPEINKHP 305
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
W+ L + +FFE +VT Y + A +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAAFDFD 339
>gi|118474076|ref|YP_891239.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
fetus subsp. fetus 82-40]
gi|118413302|gb|ABK81722.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
fetus subsp. fetus 82-40]
Length = 340
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 156/349 (44%), Gaps = 13/349 (3%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I ++D+++ + KY WA + + N W P EV DD
Sbjct: 2 NRKKIYNPSSNETLNDRKVFGGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTDD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ + LT E+ M S +S NN+ I +++ PE L RQA+EE
Sbjct: 62 VRDYAC--NLTTAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAILARQAYEE 119
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A HS ++ ++ ++ + ++ M + + K ++ + L+
Sbjct: 120 ANHSKSYAVMVEAICDNTDLIYEMEKYDDVLRKKNDYISSVYEELAGEVTDEKL------ 173
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN
Sbjct: 174 --LLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINS 231
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E P L+T E + K M +A LEI + +G E+Y+ ++ + R
Sbjct: 232 VRKERPDLFTSEVEAKIYEMFKKAGDLEIEWGKYITGNQIMGFTDDIIEEYIHYLVDDRL 291
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
IGL+ L+ ++P W+ + ++ NFFE++VT Y +G+ D
Sbjct: 292 TSIGLKKLYN-AKHPIKWVDDFAKFNDQKSNFFESKVTNYSKGSLTFDD 339
>gi|223039245|ref|ZP_03609535.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
rectus RM3267]
gi|222879606|gb|EEF14697.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
rectus RM3267]
Length = 340
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 91/349 (26%), Positives = 154/349 (44%), Gaps = 13/349 (3%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I N+ D+R+ N + KY WA + + N W P EV D
Sbjct: 2 NRKRIYNPGSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTSGD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ + LT E+ M S +S NN+ I +++ PE L RQA+EE
Sbjct: 62 VRDYA--YSLTQAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLARQAYEE 119
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A HS ++ ++ ++ + ++ M + + K ++ + L+
Sbjct: 120 ANHSKSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAGEVTDEKL------ 173
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN
Sbjct: 174 --LLAMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINS 231
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E P L+T E + K M A LEI + +G EQY++++ ++R
Sbjct: 232 VRTERPDLFTSEMEAKIYDMFKRAGELEIKWGKYITQNQIMGFTDDIIEQYIRYLIDQRL 291
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
IGL+ + +P W+ + ++ NFFE +VT Y +G+ D
Sbjct: 292 VAIGLKRRYD-ARHPIKWVDDFAKFNDQKSNFFEAKVTNYSKGSISFDD 339
>gi|294463759|gb|ADE77404.1| unknown [Picea sitchensis]
Length = 289
Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats.
Identities = 83/297 (27%), Positives = 139/297 (46%), Gaps = 29/297 (9%)
Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
EV + DL W LT +E+ I L FFA+S+ +V N+ + + PE R +
Sbjct: 2 EEVDLSQDLYQW---VNLTKNEKHFISHVLAFFAASDGIVLENLAGRFLKDVQIPEARAF 58
Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173
Q E +HS + ++ + D E LFN +P + KA WA+++ Q+ S
Sbjct: 59 YGFQIAIENIHSEMYSLLLETYIRDSKEKARLFNAINTIPCVARKAEWAMRWIQSSGS-- 116
Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
+ V + EG++F F I L + M G+ + I RDE L
Sbjct: 117 ------------FAERIVSFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGL 164
Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
H +F + + L +K +++ + ++ +A +E + E + VG+NA
Sbjct: 165 HCDFACLLYS-------LLKSKLSEERVKAIVRDAVDIEREFVCEALSCDLVGMNATLMS 217
Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
QY++FIA+R +G ++ ENPF WM +I L+ + NFFE RV +YQ+ + +
Sbjct: 218 QYIKFIADRLLVALGHGKMYHV-ENPFDWMD-LISLQGKTNFFERRVGDYQKASIMS 272
>gi|215401441|ref|YP_002332744.1| RR2b [Spodoptera litura nucleopolyhedrovirus II]
gi|209483982|gb|ACI47415.1| RR2b [Spodoptera litura nucleopolyhedrovirus II]
Length = 313
Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats.
Identities = 90/324 (27%), Positives = 154/324 (47%), Gaps = 26/324 (8%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
L P+++ W Y A + W EV + D + LTD+ER I++ L FFA
Sbjct: 5 RKVLFPIQHIDLWTAYKQALDCMWKVEEVDLSKDYDDF--TQKLTDNERNFIEKILAFFA 62
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
+++S+V NI+ + R + E + + +Q E +H+ + +I +L DE + L N
Sbjct: 63 AADSIVNINIIEHMQRTVPELEAQYFYNQQVLIECIHTEMYNLLIHALIKDEEKQATLLN 122
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ +P + KA WA++Y + + L + + + + EG++F FA
Sbjct: 123 GFESMPCVRRKAEWAMKYIE-------------NENVTLAERLIAFAIVEGVFFSGSFAA 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
I + M G+ + I RDE LH NF N + K M E
Sbjct: 170 IFYMKTKGVMPGLTFSNELISRDEGLHTNFACLYYNTRVDQ------KLDVPTVSDMFAE 223
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
A +E+ + E +P+ VG+NA +Y++F+A+R Q+ ++ +TENPF +M+ I
Sbjct: 224 AVAIEMEFFAEALPESLVGMNAEMMRKYIEFVADRLLVQLKYPKIY-HTENPFEFMN-NI 281
Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
L+ + NFFE RV EY++ +
Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGED 305
>gi|20069937|ref|NP_613141.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A]
gi|20043331|gb|AAM09166.1| ribonucleotide reductase small subunit [Mamestra configurata NPV-A]
gi|33331769|gb|AAQ11077.1| putative ribonucleotide reductase small subunit-like protein
[Mamestra configurata NPV-A]
Length = 313
Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats.
Identities = 84/324 (25%), Positives = 144/324 (44%), Gaps = 26/324 (8%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
L P+ + +E Y A W EV + D ++ L +D+R I LGFF+
Sbjct: 5 RKTLYPIVHEDLYEAYKRAEACFWRMEEVDLSKDYDDFQ--LKLNNDQRHFIMHVLGFFS 62
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
+++S+V N++ + + + E + QA E VH+ + +I L D+ + N
Sbjct: 63 AADSIVNINVLNYMLQTVPELEAVYFYTFQAAMENVHTQMYGTLIIELIPDKKHQDLILN 122
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ VP + K +WAL++ + + F + L + + EG++F FA
Sbjct: 123 AFDNVPCVRKKDDWALKWIE------------NDKATFAERLVA-FAIVEGVFFSGSFAA 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
I + M G+ + I RDE +H +F N E K +K M E
Sbjct: 170 IFYIKTLGIMPGLTFSNELISRDEGMHTDFACLYYNTRVKE------KLSYEKILDMFKE 223
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
A +E + + +P +G+NA +Y++F+A+R Q+G + NPF +M+ I
Sbjct: 224 AVDIEKEFFTDALPVSLLGMNATMMCEYIEFVADRLLMQLGQPKYYN-ARNPFSFMN-NI 281
Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
L+ + NFFE RV EY+
Sbjct: 282 SLEGKTNFFERRVGEYKMFGTGSD 305
>gi|197322443|ref|YP_002154716.1| putative ribonucleotide reductase small subunit [Feldmannia species
virus]
gi|197130510|gb|ACH46846.1| putative ribonucleotide reductase small subunit [Feldmannia species
virus]
Length = 342
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 78/338 (23%), Positives = 141/338 (41%), Gaps = 34/338 (10%)
Query: 22 KRMLNARS--DVNQLLP----LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ M + S D L +Y + Y W E+ + +D+ W + +
Sbjct: 17 EPMCHEDSEFDRFILFNQKSEFEYADVYALYKKEIACFWTVEEMDLSEDVECW---DKSS 73
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
DE+ I L FFAS + +V N+ + + P+ R + Q E++H + +I
Sbjct: 74 SDEQHFIIHILAFFASLDQIVMENVSVNFGDEIVIPQVRSHFAIQNAIESIHGEAYSILI 133
Query: 136 TSLG---LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ + ++ +E+P I KA W + D + L + V
Sbjct: 134 QTYVKNSQQQSKILRSVQEMPIIRKKAQWVTSWM-------------DPETCSLAERLVA 180
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ EG+ F F I L + + G+ I RDE LH + + N +K P
Sbjct: 181 FTCVEGVQFSGAFCAIYWLKKQGRFRGLCFANSLIARDEGLHAEGSVMIYNHLKHRLPV- 239
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+ +AT +E + E +P +G+NA + Y+++I++ ++G L
Sbjct: 240 ------AVVHDIFGQATTIEKEFIREALPVSLIGINAGTMSTYIEYISDFWLEKLGYPKL 293
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
F ++NPF WM+ +I ++ + NFFE RV EY + +
Sbjct: 294 FN-SKNPFEWMT-MIGMEGKSNFFEGRVAEYSKAGSMT 329
>gi|154174558|ref|YP_001409201.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
curvus 525.92]
gi|112803525|gb|EAU00869.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
curvus 525.92]
Length = 340
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 92/349 (26%), Positives = 160/349 (45%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I N+ D+R+ N + KY WA + + N W P EV DD
Sbjct: 2 NRKRIYNPSSNENLTDRRVFNGNPHGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ + LTD E+ M S +S NN+ I +++ PE L RQA+EE
Sbjct: 62 VRDYA--YNLTDAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLSRQAYEE 119
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A HS ++ ++ ++ + ++ M + + K ++ + L+
Sbjct: 120 ANHSKSYAVMVEAICDNTDLIYEMEKHDEVLREKNDYISSVYEELAGEVTDEKL------ 173
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN
Sbjct: 174 --LLAMVANQILEGIYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINS 231
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+T E ++K M +A LEI + +G E+Y+ ++ ++R
Sbjct: 232 VRAERSDLFTPEMEEKIYDMFEKAGNLEIKWGRYITQNQIMGFTDDIIEEYIHYLVDQRL 291
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
IGL+ + ++P W+ + ++ NFFE++VT Y +G+ L +D
Sbjct: 292 VAIGLKRKYN-AKHPIKWVDDFAKFNDQKSNFFESKVTNYSKGS-LSFD 338
>gi|193206379|ref|NP_500944.2| hypothetical protein F58F9.1 [Caenorhabditis elegans]
Length = 581
Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats.
Identities = 76/318 (23%), Positives = 136/318 (42%), Gaps = 46/318 (14%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L ++ + P+ + WE Y A W EV + D++ W+ LT DER
Sbjct: 307 EPLLAPNNNRFVVHPIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWE---ILTSDERQF 363
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+S+ +V N+ + E R + Q E +HS + ++ + D
Sbjct: 364 ISSILAFFAASDGIVTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRD 423
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LFN I AKA+W L++ D + F + L V EG
Sbjct: 424 DAERNILFNAITTFKFIKAKADWCLRWI------------SDHNAPFSERLAAVAAV-EG 470
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F + FA I L + + G+ + I R K +
Sbjct: 471 IFFSSSFAAIFWLKKRGLLPGLTHSNELISR-------------------------KPAE 505
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+ +++E+ L+E + E++P +G+N +Y++F+A+ ++G + T+N
Sbjct: 506 SRITEIINESVLVEQDFVRESLPTNLIGMNQHMMCKYVEFVADLLLEELGYSKRYN-TKN 564
Query: 319 PFPWMSEVIDLKKEKNFF 336
F +M E I ++ + NFF
Sbjct: 565 LFDFM-ENISIEGKTNFF 581
>gi|297736972|emb|CBI26173.3| unnamed protein product [Vitis vinifera]
Length = 312
Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats.
Identities = 79/289 (27%), Positives = 129/289 (44%), Gaps = 29/289 (10%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y A + W EV + D+ W+S L++ E+ I L FFA+S+ +V N+
Sbjct: 1 MYKKAEASFWTAEEVDLSHDVQQWES---LSNSEKHFISHVLAFFAASDGIVLENLAARF 57
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
+ PE R + Q E +HS + ++ + D E LFN + + KA W
Sbjct: 58 LHDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIESISCVAGKAKW 117
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
AL + Q+ + + + EG++F F I L + M G+
Sbjct: 118 ALDWIQS--------------STLFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLT 163
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ I RDE LH +F + + ++ + P QK ++HEA +E + E +P
Sbjct: 164 FSNELISRDEGLHCDFACLLYSLLQKQLPW-------QKVHHIVHEAVEIETQFVCEALP 216
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
+G+NA QY++F+A+R +G E + ENPF WM E I L+
Sbjct: 217 CALIGMNATLMSQYIKFVADRLLVALGYERKYNV-ENPFDWM-EFISLQ 263
>gi|260497963|ref|ZP_05816079.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 3_1_33]
gi|260196471|gb|EEW94002.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 3_1_33]
Length = 344
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 162/353 (45%), Gaps = 23/353 (6%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D
Sbjct: 2 DRKKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ LT ER L F +S+ NNI I H++ PE L Q F+E
Sbjct: 62 KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISEHVTAPEVNLLLAIQTFQE 117
Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
A+HS ++QYII S+ + +++ +R+ + + ++ + Q +
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
E + + + E ++FY GF L NKMVG ++ + I RDE H+ ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIV 229
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+IK + P+ ++ E +M A EIA+ + +G+ + + E Y +++AN
Sbjct: 230 KEIKNDFPNFFSAET---VYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANE 286
Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
R +GLEPLF + +NP+ + D + + NFFE VT Y + +
Sbjct: 287 RLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339
>gi|294784669|ref|ZP_06749957.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 3_1_27]
gi|294486383|gb|EFG33745.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 3_1_27]
Length = 344
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 161/353 (45%), Gaps = 23/353 (6%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ E ++ +R++ +++ L ++Y WA + Y + N W+P +V + D
Sbjct: 2 DRKKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ LT ER L F +S+ NNI I H++ PE L Q F+E
Sbjct: 62 KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQE 117
Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
A+HS ++QYII S+ + +++ +R+ + + ++ + Q +
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
E + + + E ++FY GF L NKMVG ++ + I RDE H+ ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMV 229
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+IK + P+ ++ E +M A EI + + +G+ + + E Y +++AN
Sbjct: 230 KEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANE 286
Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
R +GLEPLF + +NP+ + D + + NFFE VT Y + +
Sbjct: 287 RLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339
>gi|289765931|ref|ZP_06525309.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. D11]
gi|289717486|gb|EFD81498.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. D11]
Length = 344
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 162/353 (45%), Gaps = 23/353 (6%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D
Sbjct: 2 DRKKLFNPEGDDTLNSRKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ LT ER L F +S+ NNI I H++ PE L Q F+E
Sbjct: 62 KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQE 117
Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
A+HS ++QYII S+ + +++ +R+ + + ++ + Q +
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
E + + + E ++FY GF L NKMVG ++ + I RDE H+ ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIV 229
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+IK + P+ ++ E +M A EIA+ + +G+ + + E Y +++AN
Sbjct: 230 KEIKNDFPNFFSAET---VYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANE 286
Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
R +GLEPLF + +NP+ + D + + NFFE VT Y + +
Sbjct: 287 RLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339
>gi|254303614|ref|ZP_04970972.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323806|gb|EDK89056.1| ribonucleoside-diphosphate reductase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 344
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 162/353 (45%), Gaps = 23/353 (6%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ E ++ +R++ +++ L ++Y WA + Y + N W+P +V + D
Sbjct: 2 DRKKLFNPEGDDTLNARRIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ LT ER L F +S+ NNI I H++ PE L Q F+E
Sbjct: 62 KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQE 117
Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
A+HS ++QYII S+ + +++ +R+ + + ++ + Q +
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
E + + + E ++FY GF L NKMVG ++ + I RDE H+ ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMV 229
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+IK + P+ ++ E +M A EIA+ + +G+ + + E Y +++AN
Sbjct: 230 KEIKNDFPNFFSAET---IYSMFKTAVEQEIAWTEHIIGNRVLGITSQTTEAYTKWLANE 286
Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
R +GLEPLF + +NP+ + D + + NFFE VT Y + +
Sbjct: 287 RLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339
>gi|237738278|ref|ZP_04568759.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
mortiferum ATCC 9817]
gi|229420158|gb|EEO35205.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
mortiferum ATCC 9817]
Length = 348
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 89/361 (24%), Positives = 169/361 (46%), Gaps = 24/361 (6%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M + ++++++++ +++ L +KYGWA Y + N W+P ++
Sbjct: 1 MKVVVDRKKLFNPSGIDSLNERKIIKGNSTNIFNLNNVKYGWANHLYRTMMGNFWIPEKI 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D + N LT+ E+ L F +S+ NNI I +++ PE L
Sbjct: 61 DLTQDRVDY---NNLTNYEKEAYDGILSFLIFLDSIQTNNIP-NISDYITAPEINLILSI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
Q F+EA+HS ++QYII S+ E +++ +RE + + + + Q
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKETRNYIYDKWREDKILFERNRYIAEIYQNFLD------ 170
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
+ D + + V + E ++FY GF L N+M+G ++ + I RDE H+
Sbjct: 171 --NPDDKNFARVIVADYLLESIYFYNGFNFFYLLASRNRMMGTSDIIRLINRDELSHVVI 228
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+I +++ ENP+ + + M +A EI++ + + +G+ + E Y +
Sbjct: 229 FQQMIKEVQNENPNFFD---ENIIYEMFEKAVEQEISWTNHIIGGNILGITEKTTESYTK 285
Query: 298 FIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-W 351
++AN R IGL+PL++ Y +NP+ + D + + NFFE VT Y + ++ W
Sbjct: 286 WLANERLKSIGLQPLYEGYEKNPYKHLERFADTEGEGNVKANFFEGTVTSYNMSSSVEGW 345
Query: 352 D 352
D
Sbjct: 346 D 346
>gi|237742881|ref|ZP_04573362.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. 4_1_13]
gi|229430529|gb|EEO40741.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. 4_1_13]
Length = 344
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 85/353 (24%), Positives = 161/353 (45%), Gaps = 23/353 (6%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D
Sbjct: 2 DRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ LT ER L F +S+ NNI I H++ PE L Q F+E
Sbjct: 62 KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQE 117
Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
A+HS ++QYII S+ + +++ +R+ + + ++ + Q +
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
E + + + E ++FY GF L NKMVG ++ + I RDE H+ ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMV 229
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+IK + P+ ++ E +M A EI + + +G+ + + E Y +++AN
Sbjct: 230 KEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANE 286
Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
R +GLEPL+ + +NP+ + D + + NFFE VT Y + +
Sbjct: 287 RLKSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339
>gi|237678830|emb|CAQ57557.1| NrdB protein [Bradyrhizobium elkanii]
Length = 360
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 82/328 (25%), Positives = 142/328 (43%), Gaps = 28/328 (8%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
+Y WA+E + HWM EVP+ DL W S + +TD ER ++ + FF S+ V
Sbjct: 36 RYAWAYEFWKRQQQTHWMGEEVPLGADLKDWAS-DRVTDSERALLTQIFRFFTQSDIEVG 94
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+N + + + E VH + ++ +LG+ + E F +R + A
Sbjct: 95 DNYLKRYIPIFQPLTVQMMMAAFTNMETVHIDAYALLLKTLGMPKTE-FEAFRGYSEMRA 153
Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
KA++ ++ D + + L +F EGM + FA +L+ R NKM
Sbjct: 154 KADYMHEF------------GVDTVADVARTLAMFGAFTEGMALFASFAMLLNFPRHNKM 201
Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
G+ + + +RDESLH I + ++ E T+ + + LE +
Sbjct: 202 NGMGQIVSWSVRDESLHCEGIIKLFHEWNRET-GAVTRSVRDDIVDVAKTMVKLEENFVD 260
Query: 278 ETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-----------TENPFPWMSE 325
G G+ Y++++A+ R Q+ + P+F + +P PW+ E
Sbjct: 261 LAFGLGKIEGMRPEQIHTYVRYVADWRLTQLRIAPVFGFFEAKEGGFTQLKAHPLPWLVE 320
Query: 326 VIDLKKEKNFFETRVTEYQQGAE-LKWD 352
+++ + NFFE R TEY + A WD
Sbjct: 321 ILNGVEHANFFEQRATEYSKAASRGSWD 348
>gi|328722535|ref|XP_001944897.2| PREDICTED: ribonucleoside-diphosphate reductase subunit M2-like
[Acyrthosiphon pisum]
Length = 345
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 74/328 (22%), Positives = 136/328 (41%), Gaps = 28/328 (8%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ + +L + P+ Y W Y + W V ++ DL W +T
Sbjct: 32 NFDATIEPLLKDNPRRFVIFPIIYDNIWAMYKKHEASLWNIEAVNLKSDLEDW---MRMT 88
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
D+ER I L F A+S +V+ N+V + + E R + Q E +HS + +I
Sbjct: 89 DEERHFISYILAFLAASNGIVSENLVKRFSQEVQVTEARCFYGFQIMIENIHSEMYSLLI 148
Query: 136 TSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+ D E L N +P + A+W L++ D+ F + L F
Sbjct: 149 DTYIKDPKEKETLINATETMPCVKKMADWVLKWI------------TDSKATFGERLVTF 196
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
V G++ I L + M+G+ + I RDE LH +F + + + P
Sbjct: 197 AAVK-GIFLSGNVPSITWLTKRGLMLGLTFSNELIFRDEGLHTDFACLLFKHLDQKPPLT 255
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
++ +A +E + + VG++ +Y++F+A+R +++G +
Sbjct: 256 V-------ITHIICKAVTIEQYFLTNALLVKMVGMSCEKMAEYIEFVADRLLNELGCPAV 308
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + NPFP+M ++ + + N FE RV
Sbjct: 309 Y-RSSNPFPFMD-LLSQQGKTNGFEKRV 334
>gi|187778605|ref|ZP_02995078.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC
15579]
gi|187772230|gb|EDU36032.1| hypothetical protein CLOSPO_02200 [Clostridium sporogenes ATCC
15579]
Length = 342
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 84/334 (25%), Positives = 166/334 (49%), Gaps = 13/334 (3%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M+N + ++ + +KY WA + Y + NN W+P E+ + +D+ + LTD ER
Sbjct: 16 ESMINGNTTNLREWNRIKYSWASDFYRTMLNNFWIPEEISLNEDVKQF---PYLTDGERN 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ + F +S+ + N+ I R+++ E L Q F+E +H+ ++ YI+ ++
Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAAEVSSLLNIQTFQEEIHAQSYSYILDTVTN 131
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ R+ + + L + + K+ + + + + EG++
Sbjct: 132 P------ITRDKIYDQWREDEQLLERNKFIAGIYEKFNKEPEIYNFLRVIMANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R KM + ++YI RDE HL ++I ++K ENP+++T+E +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEVTHLVLFQNIIKELKSENPNIFTEELEEE 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
R M+ EI + +GLN ++Y+++++N R IGL+PL+ ++P
Sbjct: 246 FREMMRMGVEHEIKWGQYVTNNEILGLNDELIDKYIKYLSNLRLTAIGLKPLYPEINKHP 305
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
W+ L + +FFE +VT Y + A +D
Sbjct: 306 MEWIDSFSKLNSTKTDFFEAKVTNYTKAAVFDFD 339
>gi|237743586|ref|ZP_04574067.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. 7_1]
gi|229432617|gb|EEO42829.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. 7_1]
Length = 344
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 161/353 (45%), Gaps = 23/353 (6%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D
Sbjct: 2 DRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ LT ER L F +S+ NNI I H++ PE L Q F+E
Sbjct: 62 KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQE 117
Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
A+HS ++QYII S+ + +++ +R+ + + ++ + Q +
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
E + + + E ++FY GF L NKMVG ++ + I RDE H+ ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMV 229
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+IK + P+ ++ E +M A EI + + +G+ + + E Y +++AN
Sbjct: 230 KEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANE 286
Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
R +GLEPLF + +NP+ + D + + NFFE VT Y + +
Sbjct: 287 RLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339
>gi|237738722|ref|ZP_04569203.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. 2_1_31]
gi|229423825|gb|EEO38872.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. 2_1_31]
Length = 344
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 85/353 (24%), Positives = 160/353 (45%), Gaps = 23/353 (6%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D
Sbjct: 2 DRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ LT ER L F +S+ NNI I H++ PE L Q F+E
Sbjct: 62 KNDYE---NLTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQE 117
Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
A+HS ++QYII S+ + +++ +R+ + + ++ + Q +
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
E + + + E ++FY GF L NKMVG ++ + I RDE H+ ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIV 229
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+IK + P ++ E +M A EI + + +G+ + + E Y +++AN
Sbjct: 230 KEIKNDYPEFFSAET---IYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEAYTKWLANE 286
Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
R +GLEPL+ + +NP+ + D + + NFFE VT Y + +
Sbjct: 287 RLKSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339
>gi|68171256|ref|ZP_00544659.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str.
Sapulpa]
gi|67999338|gb|EAM85984.1| Ribonucleoside-diphosphate reductase [Ehrlichia chaffeensis str.
Sapulpa]
Length = 294
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 77/300 (25%), Positives = 143/300 (47%), Gaps = 14/300 (4%)
Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
+P EVP+ DD+ WK+ L++ E+ ++ + FF ++ V N + E
Sbjct: 1 LPEEVPLADDVQDWKTV--LSEKEKNLLVQIFRFFTQADIEVNNCYMKHYSNIFKPTEVC 58
Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
L + E +H + Y++ ++G+ E E + + + + K ++ ++ +
Sbjct: 59 MMLSAFSNMETIHIAAYSYLLDTIGMPEIE-YQAFLKFEVMKKKYDYMQRFEE------- 110
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
K+ + + L VF EG+ + FA +L+ R KM G+ + + +RDE+LH
Sbjct: 111 --CRKNDKRHVAKTLAVFGAFTEGLQLFASFAILLNFQRFGKMKGMGQIIAWSVRDETLH 168
Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
I + N EN +W +Q+ LE + + G GL++ +
Sbjct: 169 TESIIRLFNTFIQENYEIWDDSLKQELYEACRIIVSLEDEFINLAFACGDVEGLSSKEVK 228
Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ-GAELKWD 352
+Y+++IANRR Q+ LEP++ +NP W+ E+++ + NFFE RVTEY + E W+
Sbjct: 229 EYIRYIANRRLLQLNLEPIYDTNKNPLLWLDEILNGVEHTNFFENRVTEYARAATEGTWE 288
>gi|319790519|ref|YP_004152152.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1]
gi|317115021|gb|ADU97511.1| ribonucleotide reductase [Thermovibrio ammonificans HB-1]
Length = 352
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/352 (26%), Positives = 154/352 (43%), Gaps = 22/352 (6%)
Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
PI E + + +L + ++ L +KY WA + Y N W+P V + D+
Sbjct: 13 PIFNPEGNDDPAKRGILKGNTTNIFNLNVIKYPWATKLYRVMMANFWIPETVDLTQDVQD 72
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
+K LTDDER L F +S+ NI I ++ PE L A++EA+H
Sbjct: 73 YKE---LTDDERQAYDEILSFLVFLDSIQTTNIP-NIAAYVKAPEITIDLSIHAYQEAIH 128
Query: 128 SHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
S ++ Y I S+ E E++ +++ P + + + Q ++ E
Sbjct: 129 SQSYGYTIESVVPAEKREEVYYWWKKDPILFERNKYIADIYQKFL--------EEPTLEN 180
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
++ + + EG++FY GF +L N M G A+ +YI RDE H+ + +
Sbjct: 181 YGEVLIGNYLLEGLYFYNGFMFFYNLASRNLMQGTADIIRYINRDELTHVILFEHFMKDL 240
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
E + K M A E ++ + + +G+N S E Y +IAN+R
Sbjct: 241 TDE--GFKKYLTKDKIYDMFRIAVDQEQRFSKKVIGNKILGMNEQSIEDYTFYIANKRLK 298
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
+GLEP+F NP+ + + D + NFFE VT Y Q ++ WD
Sbjct: 299 ALGLEPIFPDRGNPYEHLERIADTGGEANVKANFFEATVTSYNQANAVEGWD 350
>gi|268678691|ref|YP_003303122.1| ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum
DSM 6946]
gi|268616722|gb|ACZ11087.1| Ribonucleoside-diphosphate reductase [Sulfurospirillum deleyianum
DSM 6946]
Length = 340
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 84/349 (24%), Positives = 151/349 (43%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I +++D+++ + KY WA + + N W P EV D
Sbjct: 2 DRKKIYNPNSDESLNDRKVFGGNPHGILNFTKAKYTWALKLWDMMEGNTWFPKEVDTTKD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ + LTD E+ M S +S NN+ I +++ PE L RQA+EE
Sbjct: 62 VIDYNK--NLTDAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINACLSRQAYEE 119
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A HS ++ ++ ++ + ++ M + + K ++ + L+
Sbjct: 120 ANHSKSYAVMVEAMCDNTDLIYEMEKHDEVLRRKNDYISSVYEELAGDVTEEKLV----- 174
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ EG++FY+GF I +L R +M+G A+ ++I RDE HL ++IN
Sbjct: 175 ---LAMFANQILEGIYFYSGFTAIYALARTGRMLGSAQMIRFIQRDEITHLLLFQNMINT 231
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
K E P L+T + K M +A LEI + +G E Y+ ++ + R
Sbjct: 232 TKKERPDLFTDALKAKVYEMFQKAGDLEIEWGKYITQNQIMGFTDDIIETYIHYLVDDRL 291
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
+G + L+ + +P W+ + ++ NFFE V+ Y +G+ L +D
Sbjct: 292 TAVGFDKLYNAS-HPIKWVDDFSKFNDQKTNFFEGNVSNYSKGS-LSFD 338
>gi|325294459|ref|YP_004280973.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325064907|gb|ADY72914.1| ribonucleotide reductase [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 352
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 89/352 (25%), Positives = 156/352 (44%), Gaps = 22/352 (6%)
Query: 9 PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
PI + + +L + ++ L +KY WA + Y N W+P V + D+
Sbjct: 13 PIFNPNGNDDPTKRGILYGNTTNIFNLNDVKYEWATKLYRVMMANFWIPETVDLTQDVLD 72
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
+K LT+DER L F +S+ NI I ++ PE L A++EA+H
Sbjct: 73 YKE---LTEDERQAYDEILSFLVFLDSIQTTNIP-NIAAYVKAPEITIDLSIHAYQEAIH 128
Query: 128 SHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
S ++ Y I S+ + ++ +++ P + + + Q ++ E
Sbjct: 129 SQSYGYTIESVIPPQHRETVYYWWKKDPILFERNKYIADIYQKFL--------EEPTMEN 180
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
++ V + EG++FY GF +L N M G A+ +YI RDE H+ + +
Sbjct: 181 YGEVLVGNYLLEGLYFYNGFMFFYNLASRNLMQGTADIIRYINRDELTHVILFEHFMKDL 240
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
E + + K M A E ++ + + +G+N S E+Y ++AN+R
Sbjct: 241 TDEEFKKYLP--KDKIYEMFKVAVNQEQRFSKKVIGNKILGMNEKSIEEYTYYVANKRLK 298
Query: 306 QIGLEPLFKYTENPFPWMSEVID----LKKEKNFFETRVTEYQQGAELK-WD 352
+GL+P+F T NP+ + + D + NFFE VT Y Q + ++ WD
Sbjct: 299 ALGLDPIFPDTPNPYEHLERIADTGGEGNVKANFFEATVTSYNQASAVEGWD 350
>gi|294782021|ref|ZP_06747353.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 1_1_41FAA]
gi|294481832|gb|EFG29601.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 1_1_41FAA]
Length = 344
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 85/353 (24%), Positives = 160/353 (45%), Gaps = 23/353 (6%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ E ++ ++++ +++ L ++Y WA + Y + N W+P +V + D
Sbjct: 2 DRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKVDLTQD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ LT ER L F +S+ NNI I H++ PE L Q F+E
Sbjct: 62 KNDYE---NLTLPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNMLLAIQTFQE 117
Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
A+HS ++QYII S+ + +++ +R+ + + ++ + Q +
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
E + + + E ++FY GF L NKMVG ++ + I RDE H+ ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSIV 229
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+IK + P ++ E +M A EI + + +G+ + + E Y +++AN
Sbjct: 230 KEIKNDYPEFFSAET---IYSMFKTAVEQEINWTEHIIGNRVLGITSQTTEVYTKWLANE 286
Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
R +GLEPL+ + +NP+ + D + + NFFE VT Y + +
Sbjct: 287 RLKSLGLEPLYSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339
>gi|257453171|ref|ZP_05618470.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp.
3_1_5R]
gi|317059706|ref|ZP_07924191.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. 3_1_5R]
gi|313685382|gb|EFS22217.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. 3_1_5R]
Length = 344
Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats.
Identities = 92/356 (25%), Positives = 163/356 (45%), Gaps = 24/356 (6%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ E ++ ++R++ +++ L +K+ WA + Y + N W+P +V + D
Sbjct: 2 DRKRLFNPEGNDSLLERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ LT ER L F +S+ NN V I +++ PE L Q F+E
Sbjct: 62 KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNN-VPNISDYVTAPEVNLLLSIQTFQE 117
Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
A+HS ++QYII S+ E +++ +R+ + + + Q Q ++
Sbjct: 118 AIHSQSYQYIIESILPKESRDLIYDKWRDDKILFERNRFIAQIYQDFI--------EETS 169
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
+ V + E ++FY GF L NKMVG ++ + I RDE H+ +I
Sbjct: 170 DRNFAKVLVANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKII 229
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+IK ENP+ + +++ R M A EI + + +G+ + E Y +++AN
Sbjct: 230 REIKAENPNFFQ---EEEIRMMFQTAVEQEILWTEHIIGNRVLGITTETTEAYTKWLANE 286
Query: 303 RCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
R IGL P++ T+NP+ + D + + NFFE VT Y + + WD
Sbjct: 287 RLRTIGLAPMYDGFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342
>gi|326792202|ref|YP_004310023.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427]
gi|326542966|gb|ADZ84825.1| ribonucleotide reductase [Clostridium lentocellum DSM 5427]
Length = 342
Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats.
Identities = 86/350 (24%), Positives = 168/350 (48%), Gaps = 19/350 (5%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
I + M+N + ++ + +KY WA Y + NN W+P E+ + +D+
Sbjct: 4 KRIFNEKGDRGTQQ--MINGNTTNLREWNRIKYDWAQTLYRTMLNNFWIPEEIALNEDVK 61
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ LTD ER + + F +S+ + N+ + R+++ PE L QAF+E +
Sbjct: 62 GF---PFLTDGERHAFDKIIAFLNFLDSIQSENLP-HLSRYITAPEVASLLNIQAFQEEI 117
Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ YI+ ++ ++++ +RE + + + + ++ + +
Sbjct: 118 HAQSYSYILDTVTNPVTRDKIYDQWREDEELLKRNRFIADIYERF--------NEEPNDK 169
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG++FY+GF+ +L R KM + ++YI RDE HL ++I +
Sbjct: 170 NFLRAIMANYILEGIYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLVVFQNIIKE 229
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+K ENP L+T+ ++ R M+ EIA+ +G+N + Y+++++N+R
Sbjct: 230 LKKENPELFTESMIEEFREMMRVGVEHEIAWGQYVTANEIMGINDQLIDAYIKYLSNQRL 289
Query: 305 HQIGLEPLFK-YTENPFPWMSEVIDL-KKEKNFFETRVTEYQQGAELKWD 352
IGLE L+ T +P W+ L + +FFE +VT Y + A +D
Sbjct: 290 KAIGLEELYPEITTHPMAWIDSFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339
>gi|257467364|ref|ZP_05631675.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium
gonidiaformans ATCC 25563]
gi|315918494|ref|ZP_07914734.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
gonidiaformans ATCC 25563]
gi|313692369|gb|EFS29204.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
gonidiaformans ATCC 25563]
Length = 344
Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats.
Identities = 93/356 (26%), Positives = 165/356 (46%), Gaps = 24/356 (6%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ E ++ ++R++ +++ L +K+ WA + Y + N W+P +V + D
Sbjct: 2 DRKRLFNPEGNDSLLERRIIKGNSTNLFNLNNVKFTWATQLYRTMMANFWIPEKVDLTQD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ LT ER L F +S+ NN V I +++ PE L Q F+E
Sbjct: 62 KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNN-VPNISDYVTAPEVNLLLSIQTFQE 117
Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
A+HS ++QYII S+ E +++ +R+ + + + Q Q ++A
Sbjct: 118 AIHSQSYQYIIESILPKESRDLIYDKWRDDKILFERNRFIAQIYQDFI--------EEAS 169
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
+ + V + E ++FY GF L NKMVG ++ + I RDE H+ +I
Sbjct: 170 DKNFAKVLVANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKII 229
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+IK ENP+ + +++ R M A EI + + +G+ + E Y +++AN
Sbjct: 230 REIKAENPNFFQ---EEEIRMMFQTAVEQEILWTEHIIGNRVLGITTETTEAYTKWLANE 286
Query: 303 RCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
R IGL P++ T+NP+ + D + + NFFE VT Y + + WD
Sbjct: 287 RLRTIGLAPMYDGFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342
>gi|160881347|ref|YP_001560315.1| ribonucleoside-diphosphate reductase [Clostridium phytofermentans
ISDg]
gi|160430013|gb|ABX43576.1| Ribonucleoside-diphosphate reductase [Clostridium phytofermentans
ISDg]
Length = 342
Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats.
Identities = 83/334 (24%), Positives = 168/334 (50%), Gaps = 17/334 (5%)
Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++ + ++ + +KY WA Y + NN W+P E+ +Q+D+ + LTD ER
Sbjct: 18 LIKGNTTNLREWNRIKYDWARLIYRTMLNNFWIPEEISLQEDVKQF---PYLTDGERNAF 74
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
+ + F +S+ + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++
Sbjct: 75 DKIIAFLNFLDSIQSENLP-NISRYITAPEVSSLLNVQAFQEEIHAQSYSYILDTVTNPV 133
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+++++RE + + + Q S + E + + EG++
Sbjct: 134 TRDRIYDIWREDKYLLERNKFIANIYQRFSD--------EPSDENFVRVVFANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R KM + ++YI RDE HL +++ ++++E ++TK +++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLVLFQNIMKELRVEQKEMFTKGLEEE 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
R M+ EIA+ +G+N +QY+++++N+R +GLE L+ T++P
Sbjct: 246 LREMMRTGVEHEIAWGQYVTDNQILGINNELIDQYIKYLSNQRLRAVGLEILYPEITKHP 305
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
W+ ++ + +FFE +VT Y + A +D
Sbjct: 306 MEWIESFSNINSTKTDFFEAKVTNYTKAAVFDFD 339
>gi|224372455|ref|YP_002606827.1| ribonucleotide-diphosphate reductase subunit beta [Nautilia
profundicola AmH]
gi|223589410|gb|ACM93146.1| ribonucleoside-diphosphate reductase, beta subunit [Nautilia
profundicola AmH]
Length = 346
Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 12/333 (3%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N ++ + L L Y WA+ + N W P EV + +D ++ L E+ M
Sbjct: 21 IINGCTEGIINLNKLSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMY 77
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
+ L +S+ NN + ++ PE ++RQA+EEA+HS ++ ++ S+ L+
Sbjct: 78 DKALSQLIFMDSIQTNNTPDHVNPWITAPEVNMCIVRQAYEEALHSQSYAVMVDSISLNT 137
Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
E++ M+R ++ K + + T + D E + V EG++FY
Sbjct: 138 DEIYEMWRVDANLRKKNEFIGNVYEEWG-----TKALNGDDEAKIYMIVANQCLEGIYFY 192
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
GFA L RA KM+G A+ ++I RDE H ++ +IK E P L+T E + +
Sbjct: 193 NGFASFYVLARAGKMLGSAQMIRFIQRDEVTHTLLFANIFKEIKKEFPDLFTPEVIKNIK 252
Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPF 320
ML+ A LE + +G++ +++ Q++AN+R +GL+ LF +NP
Sbjct: 253 DMLYAAYELERDWGWYITNDEILGMSKELIDRFTQYLANKRAQAMGLDLLFPEVGLKNPI 312
Query: 321 PWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
W + + NFFE V Y +G+ D
Sbjct: 313 SWFDGFSSFNEQKTNFFEGNVVNYSKGSLNLDD 345
>gi|153952438|ref|YP_001397460.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. doylei 269.97]
gi|152939884|gb|ABS44625.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. doylei 269.97]
Length = 340
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 89/348 (25%), Positives = 156/348 (44%), Gaps = 13/348 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I + D+++ + + KY WA + + N W P EV D
Sbjct: 3 RKKIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDA 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ LT E+ M S +S NN+ I +++ PE L RQA+EEA
Sbjct: 63 LDYRC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
HS ++ ++ ++ + ++ M + ++ K ++ + L+ D D
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNK 172
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
E P L+ E K M +A LEI + +G E+Y+ ++ ++R
Sbjct: 233 HKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLS 292
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
I L+ L+ ++P W+ + ++ NFFE++VT Y +G+ D
Sbjct: 293 AINLDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339
>gi|27375117|ref|NP_766646.1| ribonucleotide-diphosphate reductase subunit beta [Bradyrhizobium
japonicum USDA 110]
gi|27348253|dbj|BAC45271.1| ribonucleoside-diphosphate reductase beta subunit [Bradyrhizobium
japonicum USDA 110]
Length = 360
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 82/328 (25%), Positives = 141/328 (42%), Gaps = 28/328 (8%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
+Y WA+E + HWM EVP+ DL W S +TD ER ++ + FF S+ V
Sbjct: 36 RYAWAYEFWKRQQQTHWMGEEVPLGADLNDWAS-GRVTDSERALLTQIFRFFTQSDIEVG 94
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+N + + E VH + ++ +LG+ + E F +R + A
Sbjct: 95 DNYFKRYIPIFQPLTVQMMMAAFTNMETVHIDAYALLLKTLGMPKTE-FEAFRGYAQMRA 153
Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
KA++ ++ D+ + + L +F EGM + FA +L+ R NKM
Sbjct: 154 KADYMHEF------------GVDSVADVARTLAMFGAFTEGMALFASFAMLLNFPRHNKM 201
Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
G+ + + +RDESLH I + ++ E T+ + + LE +
Sbjct: 202 NGMGQIVSWSVRDESLHCEGIIKLFHEWHRET-GAVTRPVRDDIVDVAKTMVKLEENFVE 260
Query: 278 ETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-----------TENPFPWMSE 325
G G+ Y++++A+ R Q+ + P+F + +P PW+ E
Sbjct: 261 LAFGLGKIEGMLPEHIHAYVRYVADWRLAQLRIAPVFGFFEAKEGGFTQLKAHPLPWLVE 320
Query: 326 VIDLKKEKNFFETRVTEYQQGAE-LKWD 352
+++ + NFFE R TEY + A WD
Sbjct: 321 ILNGVEHANFFEQRATEYSKAASRGSWD 348
>gi|289177076|ref|NP_001165949.1| ribonucleoside-diphosphate reductase subunit M2 B isoform 3 [Homo
sapiens]
gi|55631160|ref|XP_528204.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B
isoform 3 [Pan troglodytes]
gi|42794058|dbj|BAD11774.1| p53-inducible ribonucleotide reductase small subunit 2 long form
[Homo sapiens]
gi|119612246|gb|EAW91840.1| ribonucleotide reductase M2 B (TP53 inducible), isoform CRA_a [Homo
sapiens]
Length = 299
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 88/296 (29%), Positives = 142/296 (47%), Gaps = 28/296 (9%)
Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R +
Sbjct: 15 DEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCF 71
Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173
Q E VHS + +I + D + LFN +P + KA+WAL++
Sbjct: 72 YGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------ 125
Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
+ + V + EG++F FA I L + M G+ + I RDE L
Sbjct: 126 -------DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 178
Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
H +F + + K +++ R ++ +A +E + E +P G +G+N +
Sbjct: 179 HCDFACLMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMK 231
Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
QY++F+A+R ++G +F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 232 QYIEFVADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 285
>gi|205356539|ref|ZP_03223302.1| ribonucleoside diphosphate reductase beta chain [Campylobacter
jejuni subsp. jejuni CG8421]
gi|205345544|gb|EDZ32184.1| ribonucleoside diphosphate reductase beta chain [Campylobacter
jejuni subsp. jejuni CG8421]
Length = 340
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 89/348 (25%), Positives = 157/348 (45%), Gaps = 13/348 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I + D+++ + + KY WA + + N W P EV D
Sbjct: 3 RKRIYNPSSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDA 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ LT E+ M S +S NN+ I +++ PE L RQA+EEA
Sbjct: 63 LDYRC--NLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
HS ++ ++ ++ + ++ M + ++ K ++ + L+ D D
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNK 172
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P L+ E K M +A LEI + +G E+Y+ ++ ++R
Sbjct: 233 RKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLS 292
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
I L+ L+ ++P W+ + ++ NFFE++VT Y +G+ D
Sbjct: 293 AINLDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339
>gi|9634266|ref|NP_037805.1| ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera
exigua MNPV]
gi|6960505|gb|AAF33575.1|AF169823_45 ORF45 ribonucleotide reductase small subunit (rr2) [Spodoptera
exigua MNPV]
Length = 313
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 92/324 (28%), Positives = 154/324 (47%), Gaps = 26/324 (8%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
L P+++ W Y A + W EV + D + LTD+ER I++ L FFA
Sbjct: 5 RKVLFPIQHIDLWASYKQALDCMWKVEEVDLSKDYDDF--TQKLTDNERNFIEKILAFFA 62
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFN 147
+++S+V NI+ + R + E + + +Q + +H+ + +I +L DE L N
Sbjct: 63 AADSIVNINIIEHMQRTVPELEAQYFYNQQVLIQCIHTEMYNLLIHALIKDEKKQEMLLN 122
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ +P + KA WA++Y D ++ L + V + + EG++F FA
Sbjct: 123 GFENMPCVRRKAEWAMKYI-------------DDEKITLAERLVAFAIVEGVFFSGSFAA 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
I + M G+ + I RDE LH NF N + K M E
Sbjct: 170 IFYMKTKGVMPGLTFSNELISRDEGLHTNFACLYYNTRVDQ------KLDAPTVNDMFSE 223
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
A +E+ + E +P+ VG+NA +Y++F+A+R Q+ ++ YTENPF +M+ I
Sbjct: 224 AVAIEMEFFAEALPESLVGMNANMMRKYIEFVADRLLVQLKYPKMY-YTENPFEFMN-NI 281
Query: 328 DLKKEKNFFETRVTEYQQGAELKW 351
L+ + NFFE RV EY++ +
Sbjct: 282 SLEGKTNFFEKRVGEYKRFGAGED 305
>gi|27769295|gb|AAH42468.1| Similar to ribonucleotide reductase M2 polypeptide [Homo sapiens]
Length = 285
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 88/296 (29%), Positives = 142/296 (47%), Gaps = 28/296 (9%)
Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R +
Sbjct: 1 EEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCF 57
Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173
Q E VHS + +I + D + LFN +P + KA+WAL++
Sbjct: 58 YGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------ 111
Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
+ + V + EG++F FA I L + M G+ + I RDE L
Sbjct: 112 -------DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 164
Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
H +F + + K +++ R ++ +A +E + E +P G +G+N +
Sbjct: 165 HCDFACLMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMK 217
Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
QY++F+A+R ++G +F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 218 QYIEFVADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 271
>gi|86149605|ref|ZP_01067835.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni CF93-6]
gi|86151167|ref|ZP_01069382.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 260.94]
gi|86153704|ref|ZP_01071907.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni HB93-13]
gi|88597173|ref|ZP_01100408.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 84-25]
gi|121613260|ref|YP_999944.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 81-176]
gi|157414529|ref|YP_001481785.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni 81116]
gi|167004901|ref|ZP_02270659.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
jejuni subsp. jejuni 81-176]
gi|218561895|ref|YP_002343674.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni NCTC 11168]
gi|283955655|ref|ZP_06373148.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 1336]
gi|315123818|ref|YP_004065822.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
jejuni subsp. jejuni ICDCCJ07001]
gi|85839873|gb|EAQ57132.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni CF93-6]
gi|85841514|gb|EAQ58761.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 260.94]
gi|85842665|gb|EAQ59877.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni HB93-13]
gi|87250215|gb|EAQ73173.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 81-176]
gi|88190234|gb|EAQ94208.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 84-25]
gi|112359601|emb|CAL34386.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
jejuni subsp. jejuni NCTC 11168]
gi|157385493|gb|ABV51808.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
jejuni subsp. jejuni 81116]
gi|283792880|gb|EFC31656.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 1336]
gi|284925507|gb|ADC27859.1| ribonucleoside-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni IA3902]
gi|307747171|gb|ADN90441.1| Ribonucleoside-diphosphate reductase subunit beta [Campylobacter
jejuni subsp. jejuni M1]
gi|315017540|gb|ADT65633.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
jejuni subsp. jejuni ICDCCJ07001]
gi|315928159|gb|EFV07477.1| ribonucleotide reductase, small chain family protein [Campylobacter
jejuni subsp. jejuni DFVF1099]
gi|315932030|gb|EFV10983.1| ribonucleotide reductase, small chain family protein [Campylobacter
jejuni subsp. jejuni 327]
Length = 340
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 89/348 (25%), Positives = 157/348 (45%), Gaps = 13/348 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I + D+++ + + KY WA + + N W P EV D
Sbjct: 3 RKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDA 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ LT E+ M S +S NN+ I +++ PE L RQA+EEA
Sbjct: 63 LDYRC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
HS ++ ++ ++ + ++ M + ++ K ++ + L+ D D
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNK 172
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P L+ E K M +A LEI + +G E+Y+ ++ ++R
Sbjct: 233 RKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLS 292
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
I L+ L+ ++P W+ + ++ NFFE++VT Y +G+ D
Sbjct: 293 AINLDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339
>gi|283955349|ref|ZP_06372848.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 414]
gi|283793109|gb|EFC31879.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni subsp. jejuni 414]
Length = 340
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 89/348 (25%), Positives = 158/348 (45%), Gaps = 13/348 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I + D+++ + + KY WA + + N W P EV D
Sbjct: 3 RKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDA 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ LT E+ M S +S +NN+ I +++ PE L RQA+EEA
Sbjct: 63 LDYRC--NLTAGEKRMYDLVWSQLISMDSFQSNNLADNINPYITAPEINAVLARQAYEEA 120
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
HS ++ ++ ++ + ++ M + ++ K ++ + L+ D D
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNK 172
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P L+ E K M +A LEI + +G E+Y+ ++ ++R
Sbjct: 233 RKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLS 292
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
I L+ L+ ++P W+ + ++ NFFE++VT Y +G+ D
Sbjct: 293 AINLDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339
>gi|149194868|ref|ZP_01871962.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2]
gi|149135027|gb|EDM23509.1| ribonucleotide-diphosphate [Caminibacter mediatlanticus TB-2]
Length = 346
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 93/333 (27%), Positives = 157/333 (47%), Gaps = 12/333 (3%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N ++ + L L Y WA+ + N W P EV + +D ++ L E+ M
Sbjct: 21 IINGCTEGIINLNKLSYPWAYNLWEMMLANTWFPREVDLTEDARQYRQ---LLPAEKRMY 77
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
+ L +S+ NN + ++ PE L+RQAFEEA+HS ++ ++ S+ L+
Sbjct: 78 DKALSQLIFMDSIQTNNTPDHVNPWITAPEVNMCLVRQAFEEALHSQSYAVMVDSISLNT 137
Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
E++ M+R ++ K + + + D E + V EG++FY
Sbjct: 138 DEIYEMWRADENLRKKNEFIGNVYEEWG-----IKALNGDDEAKIYMIVANQALEGIYFY 192
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
GFA L RA KM+G A+ ++I RDE H ++ +IK E P L+T E + +
Sbjct: 193 NGFAAFYVLARAGKMLGSAQMIRFIQRDEVTHTLLFANIFKEIKKEFPDLFTPEVIRNIK 252
Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT--ENPF 320
ML+ A LE + +GL+ +++ +++AN+R H +GLE LF +NP
Sbjct: 253 DMLYAAYELERDWGFYITNDEILGLSKELIDRFTKYLANKRAHAMGLELLFPEIGLKNPI 312
Query: 321 PWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
W + + NFFE V Y +G+ D
Sbjct: 313 SWFDSFSSFNEQKTNFFEGNVVNYSKGSLNLDD 345
>gi|165969130|ref|YP_001651030.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV]
gi|164663626|gb|ABY65846.1| ribonucleotide reductase small subunit 2 [Orgyia leucostigma NPV]
Length = 339
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 91/333 (27%), Positives = 150/333 (45%), Gaps = 20/333 (6%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
+LP+++ W Y +A + W EV + D W L + ER IK L FFA
Sbjct: 7 RKVILPIQHEKLWRAYKTALDCMWKVEEVDLSRDYEDW--CTKLNERERFFIKHILAFFA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE---GELFN 147
S++S+V N++ + + E R + +Q E VHS + +I +E EL N
Sbjct: 65 SADSIVNINLIDYVRDAVGELEARYFYDQQILIENVHSEMYSLLIFEYIKNEKEQNELLN 124
Query: 148 MYREVPSITAKANWALQYTQTLS---------SPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ +V + KA WAL++T++ + T + L V + + EG
Sbjct: 125 AFEDVKCVRKKAQWALKWTESSWWRDWLVNPLVKLWRTWRDGSSASKLARRMVAFAIVEG 184
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I + M G+ + I RDE LH NF N+ E + + E
Sbjct: 185 VFFSGSFAAIFFIKTKGIMPGLTFSNELISRDEGLHTNFACLYYNEYIDERDKMSSAE-- 242
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
M EA +E + +P +G+N+ + +Y++F+A+R ++ F T N
Sbjct: 243 --ILDMFVEAVNIEKEFFTSALPCDLLGMNSRAMCEYIEFVADRLLTELQQPKHFN-TPN 299
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
PF +M+ I L+ + NFFE RV EY++
Sbjct: 300 PFNFMN-NISLEGKTNFFERRVGEYKRFGAGAD 331
>gi|57237291|ref|YP_178304.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
jejuni RM1221]
gi|148926379|ref|ZP_01810063.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
jejuni subsp. jejuni CG8486]
gi|57166095|gb|AAW34874.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
jejuni RM1221]
gi|145844771|gb|EDK21876.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
jejuni subsp. jejuni CG8486]
gi|315057661|gb|ADT71990.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Campylobacter jejuni subsp. jejuni S3]
Length = 340
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 89/348 (25%), Positives = 157/348 (45%), Gaps = 13/348 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I + D+++ + + KY WA + + N W P EV D
Sbjct: 3 RKRIYNPNSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDA 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ LT E+ M S +S NN+ I +++ PE L RQA+EEA
Sbjct: 63 LDYRC--NLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
HS ++ ++ ++ + ++ M + ++ K ++ + L+ D D
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNK 172
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P L+ E K M +A LEI + +G E+Y+ ++ ++R
Sbjct: 233 RKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLS 292
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
I L+ L+ ++P W+ + ++ NFFE++VT Y +G+ D
Sbjct: 293 AINLDKLYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339
>gi|260220050|emb|CBA27200.1| Ribonucleoside-diphosphate reductase subunit alpha [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 1306
Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 112/184 (60%), Positives = 141/184 (76%)
Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
+ P+F TGT ++DQ L+ L VF + EG++FY GF QIL+LGR NKM G AEQYQYI+
Sbjct: 1123 IMDPNFHTGTSESDQVLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYIL 1182
Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
RDES+H NFGID+INQ+K+ENPHLWT EF+ + + + +A LE YA +TMP+G +G+N
Sbjct: 1183 RDESMHCNFGIDLINQLKLENPHLWTPEFKAEIKALFEKAVELEYRYAEDTMPRGVLGMN 1242
Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
A + Y+++IANRR QIGLEPLF ENPFPWMSE+IDLKKE+NFFETRV EYQ G
Sbjct: 1243 ASMFKGYLRYIANRRATQIGLEPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGA 1302
Query: 349 LKWD 352
L WD
Sbjct: 1303 LSWD 1306
>gi|228861726|ref|YP_002854746.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus]
gi|226425174|gb|ACO53586.1| Rr2 [Euproctis pseudoconspersa nucleopolyhedrovirus]
Length = 339
Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 91/333 (27%), Positives = 155/333 (46%), Gaps = 20/333 (6%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
+LP+++ W+ Y +A + W EV + D W+ N L +DER +K L FFA
Sbjct: 7 RKVILPIQHANLWKAYKTALDCVWKVEEVDLTKDWEDWQ--NKLNEDERHFLKHILAFFA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
S++S+V N++ + ++ E R + +Q F E VHS + +I DE E L N
Sbjct: 65 SADSIVNINLIDYVRGKVAELEARYFYDQQIFIENVHSEMYSLLIFEYIKDEQEKDTLLN 124
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ---------DLFVFYVVFEG 198
+ ++ + KA WAL++T++ + L V + + EG
Sbjct: 125 AFNDIECVRKKAQWALKWTESAWWQDWLVNPATRWCNRLMGKQTPSELAVRMVAFAIVEG 184
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I + M G+ + I RDE LH NF N+ E+ L +
Sbjct: 185 VFFSGSFAAIFYIKTKGVMPGLTFSNELISRDEGLHTNFACLYYNEYIPEHDKLSS---- 240
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ M EA +E + +P +G+N S +Y++F+A+R + F + N
Sbjct: 241 ERILDMFIEAVEIEKEFFKTALPCSLLGMNTESMCRYIEFVADRLLVDLNQPKHFMAS-N 299
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
PF +M+ I ++ + NFFE RV EY++ +
Sbjct: 300 PFNFMT-NISMEGKTNFFERRVGEYRRFGAGQD 331
>gi|57505748|ref|ZP_00371674.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
upsaliensis RM3195]
gi|57016021|gb|EAL52809.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
upsaliensis RM3195]
Length = 340
Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats.
Identities = 87/348 (25%), Positives = 159/348 (45%), Gaps = 13/348 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I ++ D+++ + + KY WA + + N W P EV D
Sbjct: 3 RKRIYNPNSNESLSDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTRDA 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ LT E+ M S +S NN+ I +++ PE L RQA+EEA
Sbjct: 63 LDYRCH--LTAAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
HS ++ ++ ++ + ++ M + ++ K ++ + L+ D D
Sbjct: 121 NHSKSYAVMVETICDNTDLIYEMEKHDATLREKNDFISGIYEELAG--------DVDDNK 172
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P L+ ++ K +M A LEI + +G E+Y+ ++ ++R
Sbjct: 233 RKERPDLFNEQNIDKIYSMFKRAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLI 292
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
I L+ ++ ++P W+ + ++ NFFE++VT Y +G+ D
Sbjct: 293 AINLDKIYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339
>gi|57168357|ref|ZP_00367491.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
coli RM2228]
gi|305432773|ref|ZP_07401932.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
coli JV20]
gi|57020165|gb|EAL56839.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
coli RM2228]
gi|304444170|gb|EFM36824.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
coli JV20]
Length = 340
Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats.
Identities = 87/348 (25%), Positives = 157/348 (45%), Gaps = 13/348 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I + D+++ + + KY WA + + N W P EV D
Sbjct: 3 RKRIYNPGSNETLTDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDA 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ LT E+ M S +S NN+ I +++ PE L RQA+EEA
Sbjct: 63 LDYRC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
HS ++ ++ ++ + ++ M + ++ K ++ + L+ D D
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNK 172
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P L+ + K M +A LEI + +G E+Y+ ++ ++R
Sbjct: 233 RKERPDLFNENNINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLV 292
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
I L+ ++ ++P W+ + ++ NFFE++VT Y +G+ D
Sbjct: 293 AINLDKIYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339
>gi|296227442|ref|XP_002759378.1| PREDICTED: ribonucleoside-diphosphate reductase subunit M2 B-like
isoform 2 [Callithrix jacchus]
Length = 299
Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats.
Identities = 88/296 (29%), Positives = 141/296 (47%), Gaps = 28/296 (9%)
Query: 57 TEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQY 116
EV + DL W N L DE+ I L FFA+S+ +V N+V + + PE R +
Sbjct: 15 DEVDLSKDLPHW---NKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCF 71
Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPS 173
Q E VHS + +I + D + LFN +P + KA+WAL++
Sbjct: 72 YGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIA------ 125
Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
+ + V + EG++F FA I L + M G+ + I RDE L
Sbjct: 126 -------DRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGL 178
Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCE 293
H +F + + K +++ R ++ +A +E + E +P G +G+N +
Sbjct: 179 HCDFACLMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMK 231
Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
QY++F+A+R ++G F ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 232 QYIEFVADRLLVELGFSKFF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 285
>gi|269862698|ref|XP_002650940.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220065381|gb|EED43116.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 332
Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 78/306 (25%), Positives = 133/306 (43%), Gaps = 30/306 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ + P++Y WE Y + W EV M D + + LT +E+
Sbjct: 54 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 110
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D
Sbjct: 111 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 170
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LFN +PSI KA WA ++ + +S V + EG
Sbjct: 171 KEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD--------------TRCVAFACVEG 216
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + I +
Sbjct: 217 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNK---------C 267
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ EA +E + E++P +G+N QY++F+A+R +G + ++ +
Sbjct: 268 TVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVST- 326
Query: 319 PFPWMS 324
PF +M
Sbjct: 327 PFDFME 332
>gi|109287926|ref|YP_654620.1| hypothetical protein MIV048L [Invertebrate iridescent virus 3]
gi|123878658|sp|Q197B2|RIR2_IIV3 RecName: Full=Probable ribonucleoside-diphosphate reductase small
subunit 048L; AltName: Full=Ribonucleotide reductase
small subunit
gi|106073549|gb|ABF82078.1| hypothetical protein MIV048L [Aedes taeniorhynchus iridescent
virus]
Length = 376
Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 75/331 (22%), Positives = 146/331 (44%), Gaps = 12/331 (3%)
Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
+D P +Y ++K+ + + HW E+ MQDD+ W N L++ E+ + + L F
Sbjct: 48 ADRTTFKPFEYPGCYDKWDTHEHAHWSFKELNMQDDVHDWH--NRLSEAEKTFLVQILRF 105
Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
F + VA V + PE R L EA+H ++ ++I++L L + +
Sbjct: 106 FTQGDVDVAVGYVQ-YLQLFQQPEVRMMLFSFGAREAMHIASYSHLISTLNLPDV-TYQE 163
Query: 149 YREVPSITAKANWALQYTQTLSSP----SFTTGTKDAD-QEFLQDLFVFYVVFEGMWFYT 203
+ + ++ K + ++ ++ D +E + +F EG+ ++
Sbjct: 164 FLKYKAMKDKHEFVFNSRFKSTTVGRFFNYLLFGYDTHLEEIAVKIALFSAFIEGVQLFS 223
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT-KEFQQKSR 262
F +L+ R M + + Q+ + DE+ H N +++ + + +EN + + R
Sbjct: 224 SFIMLLNFTRHGLMKKMGQIIQWSIADETHHTNSMMELFSTLVVENKSHIRLGVLEARVR 283
Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
+ LE + G L A + Y+++I NRR +G PL+ ENP P
Sbjct: 284 DTARKIVQLEDGFIDLAFSMGEMRQLTADDVKSYIRYITNRRLQTMGYLPLYSVVENPLP 343
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA-ELKW 351
W+ ++++ NFFE + TEY + + W
Sbjct: 344 WVEDLLNAPSHTNFFENKPTEYAKASLTGDW 374
>gi|257462865|ref|ZP_05627271.1| ribonucleoside-diphosphate reductase beta chain [Fusobacterium sp.
D12]
Length = 348
Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 87/361 (24%), Positives = 161/361 (44%), Gaps = 24/361 (6%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M + E ++ +++++ +++ L +K+ WA + Y + N W+P +V
Sbjct: 1 MKAAVDRKRLFNPEGNDSLLERKIIKGNSTNLFNLNNVKFSWATQLYRTMMANFWIPEKV 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D ++ LT ER L F +S+ NN+ I +++ PE L
Sbjct: 61 DLTQDKNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNLP-NISDYITAPEVNLLLSI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
Q F+EA+HS ++QYII S+ E +++ +R+ + + + Q Q
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKESRDLIYDKWRDDKVLFERNRFIAQIYQDFI------- 169
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
++ + + + + E ++FY GF L NKMVG ++ + I RDE H+
Sbjct: 170 -EETSDQNFAKVLIANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVL 228
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+I +IK +++ R M A EI + + +G+ + E Y +
Sbjct: 229 FQKIIREIKA---ENHNFFEEEEIRAMFRTAVEQEILWTEHIIGNRILGITTETTEAYTK 285
Query: 298 FIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-W 351
++AN R IGL P+++ T+NP+ + D + + NFFE VT Y + + W
Sbjct: 286 WLANERLRTIGLAPMYEEFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGW 345
Query: 352 D 352
D
Sbjct: 346 D 346
>gi|118443949|ref|YP_878438.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
novyi NT]
gi|118134405|gb|ABK61449.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
novyi NT]
Length = 342
Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats.
Identities = 88/336 (26%), Positives = 169/336 (50%), Gaps = 17/336 (5%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M+N + ++ + +KY WA E Y + NN W+P E+ + +D+ + LTD ER
Sbjct: 16 ESMINGNTTNLREWNRIKYNWANELYRTMLNNFWIPEEISLNEDVKQF---PYLTDGERN 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ + F +S+ + N+ I R+++ PE L Q F+E +H+ ++ YI+ ++
Sbjct: 73 AFDKIISFLNFLDSVQSENLP-NISRYITAPEVSSLLNVQTFQEEIHAQSYSYILDTVTN 131
Query: 141 D--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
++++ +RE ++ + + Q+ ++ E + + EG
Sbjct: 132 PITRDKIYDQWREDKNLLERNKFIAGIYQSF--------NENPTTENFLRTIMANYILEG 183
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++FY+GF+ +L R KM + ++YI RDE HL ++I ++K ENP ++T+
Sbjct: 184 IYFYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLILFQNIIKELKNENPDIFTESIM 243
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTE 317
++ R M+ EI + +G+N E+Y+++++N R + IGLE L+ TE
Sbjct: 244 EEFRMMMKMGVEHEIKWGQYVTNNEILGINDNLIEKYIKYLSNLRLNAIGLEVLYPEITE 303
Query: 318 NPFPWMSEVIDL-KKEKNFFETRVTEYQQGAELKWD 352
+P W+ L + +FFE +VT Y + A +D
Sbjct: 304 HPMEWIENFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339
>gi|256846215|ref|ZP_05551673.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 3_1_36A2]
gi|256719774|gb|EEU33329.1| ribonucleoside-diphosphate reductase, beta subunit [Fusobacterium
sp. 3_1_36A2]
Length = 344
Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 85/353 (24%), Positives = 160/353 (45%), Gaps = 23/353 (6%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ E ++ ++++ +++ L ++ WA + Y + N W+P +V + D
Sbjct: 2 DRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRCQWANQLYRTMMANFWIPEKVDLTQD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ LT ER L F +S+ NNI I H++ PE L Q F+E
Sbjct: 62 KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAIQTFQE 117
Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
A+HS ++QYII S+ + +++ +R+ + + ++ + Q +
Sbjct: 118 AIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID--------EQS 169
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
E + + + E ++FY GF L NKMVG ++ + I RDE H+ ++
Sbjct: 170 DENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVLFRSMV 229
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+IK + P+ ++ E +M A EI + + +G+ + + E Y +++AN
Sbjct: 230 KEIKNDFPNFFSAET---IYSMFKTAVEQEITWTEHIIGNRVLGITSQTTEAYTKWLANE 286
Query: 303 RCHQIGLEPLF-KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
R +GLEPLF + +NP+ + D + + NFFE VT Y + +
Sbjct: 287 RLKSLGLEPLFSGFNKNPYKHLERFADTEGEGNVKSNFFEGTVTSYNMSSSID 339
>gi|154149104|ref|YP_001405803.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
hominis ATCC BAA-381]
gi|153805113|gb|ABS52120.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
hominis ATCC BAA-381]
Length = 340
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 88/348 (25%), Positives = 160/348 (45%), Gaps = 14/348 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I + ++++ + + KY WA + + N W P EV DD+
Sbjct: 3 RKKIYNPFSNETLTERKIFSGNPQGILNFTKAKYVWALKLWDIMEANTWFPREVDTTDDV 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ LT E+ M + S +S NN+ I +++ PE L RQA+EEA
Sbjct: 63 RDYN--FNLTPAEKRMYELVWSQLISMDSFQTNNLADNINPYITAPEINAILARQAYEEA 120
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
HS ++ ++ ++ + +++ M + + K ++ + L+ + D+
Sbjct: 121 NHSKSYAVMVEAICQNTDQIYEMEKFDDVLREKNDYISSIYEELAG--------EVDENK 172
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY+GF I +L R+ KM+G A+ ++I RDE HL ++IN +
Sbjct: 173 LLLAMVANQILEGIYFYSGFCSIYALARSGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P L+ + K M +A LEI + +GL E+Y+ ++ + R
Sbjct: 233 RKERPDLFNDKNIAKIYEMFEKAGELEIKWGKYITQNQIMGLTDEIIEEYIHYLVDNRLS 292
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
IGL + +P W+ + ++ NFFE++VT Y +G+ L +D
Sbjct: 293 AIGLNKKYN-ARHPIKWVDDFAKFNDQKSNFFESKVTNYSKGS-LNFD 338
>gi|222824493|ref|YP_002576067.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
lari RM2100]
gi|222539714|gb|ACM64815.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
lari RM2100]
Length = 340
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I + ++D+++ N + KY WA + + N W P EV D
Sbjct: 2 NRKRIYNPKSNETLNDRKVFNGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ LT E+ M S +S NN+ I +++ PE L RQA+EE
Sbjct: 62 ALDYRC--NLTVAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEE 119
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A HS ++ ++ ++ + ++ M + ++ K ++ + L+ + D
Sbjct: 120 ANHSKSYAVMVEAICENTDLIYEMEKHDETLREKNDFISSIYEELAG--------EVDDN 171
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
L V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN
Sbjct: 172 KLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINS 231
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+ K M +A LEI + +G E+Y+ ++ ++R
Sbjct: 232 VRKERADLFNDTNVSKIYDMFKKAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRL 291
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
I L+ ++ ++P W+ + ++ NFFE++VT Y +G+ L +D
Sbjct: 292 IAINLDKIYNV-KHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-LSFD 338
>gi|323337480|gb|EGA78728.1| Rnr4p [Saccharomyces cerevisiae Vin13]
Length = 328
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 70/333 (21%), Positives = 135/333 (40%), Gaps = 27/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +L S + P+KY W Y + W E+ + D ++ LTDD++
Sbjct: 6 KDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ---KLTDDQK 62
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I L SS++LV ++ L NPE + + Q E ++S + ++ +
Sbjct: 63 TYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFF 122
Query: 140 LDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D + F +P + K + ++ D + V + E
Sbjct: 123 KDPKNIPLFKEIANLPEVKHKTAFIERWI-------------SNDDSLYAERLVAFAAKE 169
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++ +A + L M G+A + I RD + +F + ++ TK
Sbjct: 170 GIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLR-------TKPN 222
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ ++ EA +E Y ++P G++ S Y++F+A+ G E +
Sbjct: 223 PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV- 281
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M +V + FFE +V++YQ+ +++
Sbjct: 282 NPFEFMEDVATA-GKTTFFEKKVSDYQKASDMS 313
>gi|315637824|ref|ZP_07893014.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
upsaliensis JV21]
gi|315482065|gb|EFU72679.1| ribonucleotide-diphosphate reductase beta subunit [Campylobacter
upsaliensis JV21]
Length = 340
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 87/348 (25%), Positives = 159/348 (45%), Gaps = 13/348 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I ++ D+++ + + KY WA + + N W P EV D
Sbjct: 3 RKRIYNPNSNESLGDRKVFSGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTRDA 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ LT E+ M S +S NN+ I +++ PE L RQA+EEA
Sbjct: 63 LDYRC--NLTAAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
HS ++ ++ ++ + ++ M + ++ K ++ + L+ D D
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDATLREKNDFISGIYEELAG--------DVDDNK 172
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P L+ ++ K +M A LEI + +G E+Y+ ++ ++R
Sbjct: 233 RKERPDLFNEQNIDKIYSMFKRAGELEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLI 292
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
I L+ ++ ++P W+ + ++ NFFE++VT Y +G+ D
Sbjct: 293 AINLDRIYN-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGSISFDD 339
>gi|68304258|ref|YP_249726.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|67973087|gb|AAY84053.1| RR2 [Chrysodeixis chalcites nucleopolyhedrovirus]
Length = 318
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 86/326 (26%), Positives = 144/326 (44%), Gaps = 26/326 (7%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
LLP+ W+ Y A + HW E+ M D W L D ER +K L FF
Sbjct: 5 SRKTLLPIVNEDLWQSYKKAVDCHWKVEEIDMSKDFDDWNK--KLNDKERFFLKHVLAFF 62
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LF 146
A+++ +V NI+ + + E + +Q F E VH+ + ++ D E +
Sbjct: 63 AAADVIVNTNIIEHMQSAVPELEASFFYAQQTFIECVHTEMYNILVVEYIKDPQECDRIL 122
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
N + S+ KA WA ++ + + V + + EG++F FA
Sbjct: 123 NAIEHIDSVKQKAAWAQKWIE-------------NQSATFAERMVAFAIVEGVFFSGSFA 169
Query: 207 QILSLG--RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
I + + + G+ + I RDE LH +F N+ E K + K +M
Sbjct: 170 AIYYIKDSKKGALPGLTYSNELISRDEGLHTDFACLYYNKYIPE----KNKLSKTKVLSM 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
EA +E + +P +G+N+ S +Y++F+A+R ++G + F T NPF +M+
Sbjct: 226 FVEAVDIEKDFFTNALPVAMLGMNSQSMCEYIEFVADRLLFELGYDKHFN-TANPFEFMN 284
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
I L+ + NFFE RV EY++
Sbjct: 285 -NISLEGKTNFFEKRVGEYKRFGAAN 309
>gi|257458932|ref|ZP_05624052.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
gracilis RM3268]
gi|257443636|gb|EEV18759.1| ribonucleoside-diphosphate reductase, beta subunit [Campylobacter
gracilis RM3268]
Length = 340
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 88/349 (25%), Positives = 153/349 (43%), Gaps = 14/349 (4%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
I + D+++ + KY WA + + N W P EV DD
Sbjct: 2 DRKKIYNPFSDETLTDRKVFGGNPQGILNFTKAKYQWALKLWDLMEANTWFPKEVDTTDD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ + LT E+ M S +S NN+ I +++ PE L RQA+EE
Sbjct: 62 VRDYN--FNLTSAEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEE 119
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
A HS ++ ++ ++ + ++ M + + K ++ + L+
Sbjct: 120 ANHSKSYAVMVEAICENTDLIYEMEKHDDMLRRKNDYISSVYEELAGEVSDDKL------ 173
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN
Sbjct: 174 --LLAMVANQILEGIYFYSGFTSIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINS 231
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ E L+ K K M A LEI + +G E+Y+ ++ ++R
Sbjct: 232 VRKERADLFNKRNVDKIYEMFETAGNLEIDWGKYITDNQIMGFTDDIIEEYIHYLVDQRL 291
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELKWD 352
IGLE + ++P W+ + ++ NFFE++VT Y +G+ L +D
Sbjct: 292 LAIGLEKRYD-AKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS-LSFD 338
>gi|51830370|gb|AAU09736.1| YGR180C [Saccharomyces cerevisiae]
Length = 345
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 72/333 (21%), Positives = 136/333 (40%), Gaps = 27/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +L S + P+KY W Y + W E+ + D ++ LTDD++
Sbjct: 23 KDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ---KLTDDQK 79
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I L SS++LV ++ L NPE + + Q E +HS + ++ +
Sbjct: 80 TYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIHSEVYSMMVDAFF 139
Query: 140 LDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D + F +P + KA + ++ D + V + E
Sbjct: 140 KDPKNIPLFKEIANLPEVKHKAAFIERWI-------------SNDDSLYAERLVAFAAKE 186
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++ +A + L M G+A + I RD + +F + ++ TK
Sbjct: 187 GIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLR-------TKPN 239
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ ++ EA +E Y ++P G++ S Y++F+A+ G E +
Sbjct: 240 PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV- 298
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M +V + FFE +V++YQ+ +++
Sbjct: 299 NPFEFMEDVATA-GKTTFFEKKVSDYQKASDMS 330
>gi|38683666|gb|AAR26843.1| FirrV-1-A19 [Feldmannia irregularis virus a]
Length = 342
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 78/327 (23%), Positives = 141/327 (43%), Gaps = 30/327 (9%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
+NQ ++ + Y W E+ + +D+A W + ++DE+ I L FFA
Sbjct: 32 LNQKTEFEFADVYALYKKEIACFWTVEEIDLNEDVACW---DKCSEDEQRFIGHILAFFA 88
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
S + +V N+ + + P+ R + Q E++H T+ +I + D + M R
Sbjct: 89 SLDQIVMENVSVNFGDEIKIPQIRSHFAMQNAIESIHGETYALLIQTYIKDPEKQVTMLR 148
Query: 151 EVPSIT---AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ + KA W + D + L + V + EG+ F F
Sbjct: 149 SIQEMPIITKKAQWVTAWM-------------DPEVASLAERLVAFTCVEGVQFSGAFCA 195
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
I L + + G+ I RDE LH + + N +K P + +
Sbjct: 196 IYWLKKQGRFRGLCFANSLIARDEGLHAEGSVMIYNHLKHRLPV-------AVVHDIFTD 248
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
A LE + E++P +G+NA + Y++++++ ++G LF T+NPF WM+ +I
Sbjct: 249 AVALEKEFIRESLPVSLIGINADTMSSYIEYVSDFWIQRLGYPKLFG-TKNPFEWMT-MI 306
Query: 328 DLKKEKNFFETRVTEYQQGAEL--KWD 352
++ + NFFE RV EY + + + D
Sbjct: 307 GMEGKSNFFEGRVAEYAKAGSMTNEDD 333
>gi|119485472|ref|ZP_01619800.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106]
gi|119457228|gb|EAW38354.1| hypothetical protein L8106_10031 [Lyngbya sp. PCC 8106]
Length = 359
Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 85/357 (23%), Positives = 159/357 (44%), Gaps = 28/357 (7%)
Query: 7 LSPIQAGEKRVNVDDKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
++PI E +V+++ + +++ QL ++Y WA Y N W+P ++ + D+
Sbjct: 18 INPIFNPEGNDHVENRSIWFGDTTNLMQLNDVRYPWAVGLYKQMRENFWVPEKLDITQDV 77
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ LT DER L + +S+ NI + ++ PE + Q +EA
Sbjct: 78 VDY---GNLTTDERRAFDGILSYLTFLDSIQTCNIP-HLKSSITAPEISLCMAEQVSQEA 133
Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
+H+ ++QY+I ++ + ++ +R + + + ++ Q ++
Sbjct: 134 MHNQSYQYMIETIIPSDRRSFVYEFWRTDSVLHNRCEYIARFYQNYID------NPTSEN 187
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
F+ L F + EG++FY GF +L M G A+ ++ I RDE H+ +I
Sbjct: 188 YFVALLADF--LLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 245
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ PH ++ M A E + + + + +G+ S EQY +++AN R
Sbjct: 246 EAMQTFPH-----SVEQIYEMFDTAVQHECRWTNHIVGRNILGITETSTEQYTKYLANAR 300
Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQ-GAELKWD 352
IGL+PL+ Y+++P+ + D KK + NFFE VT Y WD
Sbjct: 301 LRSIGLKPLYTDPRYSKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVGGWD 357
>gi|6321619|ref|NP_011696.1| Rnr4p [Saccharomyces cerevisiae S288c]
gi|1710402|sp|P49723|RIR4_YEAST RecName: Full=Ribonucleoside-diphosphate reductase small chain 2;
AltName: Full=Ribonucleotide reductase R2 subunit 2;
AltName: Full=Ribonucleotide reductase small subunit 2
gi|15826570|pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer
gi|52695527|pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
gi|52695528|pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
gi|915546|gb|AAB72236.1| Rnr4p [Saccharomyces cerevisiae]
gi|1323319|emb|CAA97206.1| RNR4 [Saccharomyces cerevisiae]
gi|285812375|tpg|DAA08275.1| TPA: Rnr4p [Saccharomyces cerevisiae S288c]
gi|323304781|gb|EGA58540.1| Rnr4p [Saccharomyces cerevisiae FostersB]
gi|323308943|gb|EGA62174.1| Rnr4p [Saccharomyces cerevisiae FostersO]
Length = 345
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 71/333 (21%), Positives = 136/333 (40%), Gaps = 27/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +L S + P+KY W Y + W E+ + D ++ LTDD++
Sbjct: 23 KDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ---KLTDDQK 79
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I L SS++LV ++ L NPE + + Q E ++S + ++ +
Sbjct: 80 TYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFF 139
Query: 140 LDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D + F +P + KA + ++ D + V + E
Sbjct: 140 KDPKNIPLFKEIANLPEVKHKAAFIERWI-------------SNDDSLYAERLVAFAAKE 186
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++ +A + L M G+A + I RD + +F + ++ TK
Sbjct: 187 GIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLR-------TKPN 239
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ ++ EA +E Y ++P G++ S Y++F+A+ G E +
Sbjct: 240 PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV- 298
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M +V + FFE +V++YQ+ +++
Sbjct: 299 NPFEFMEDVATA-GKTTFFEKKVSDYQKASDMS 330
>gi|151943458|gb|EDN61769.1| ribonucleotide reductase [Saccharomyces cerevisiae YJM789]
gi|190406805|gb|EDV10072.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a]
gi|256270921|gb|EEU06048.1| Rnr4p [Saccharomyces cerevisiae JAY291]
gi|259146684|emb|CAY79941.1| Rnr4p [Saccharomyces cerevisiae EC1118]
gi|323333575|gb|EGA74969.1| Rnr4p [Saccharomyces cerevisiae AWRI796]
gi|323348450|gb|EGA82695.1| Rnr4p [Saccharomyces cerevisiae Lalvin QA23]
Length = 345
Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats.
Identities = 70/333 (21%), Positives = 135/333 (40%), Gaps = 27/333 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +L S + P+KY W Y + W E+ + D ++ LTDD++
Sbjct: 23 KDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQ---KLTDDQK 79
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I L SS++LV ++ L NPE + + Q E ++S + ++ +
Sbjct: 80 TYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFF 139
Query: 140 LDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D + F +P + K + ++ D + V + E
Sbjct: 140 KDPKNIPLFKEIANLPEVKHKTAFIERWI-------------SNDDSLYAERLVAFAAKE 186
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++ +A + L M G+A + I RD + +F + ++ TK
Sbjct: 187 GIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLR-------TKPN 239
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ ++ EA +E Y ++P G++ S Y++F+A+ G E +
Sbjct: 240 PKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV- 298
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NPF +M +V + FFE +V++YQ+ +++
Sbjct: 299 NPFEFMEDVATA-GKTTFFEKKVSDYQKASDMS 330
>gi|269865627|ref|XP_002651990.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063361|gb|EED42066.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 290
Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats.
Identities = 85/301 (28%), Positives = 137/301 (45%), Gaps = 31/301 (10%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
+ W EV M D + + LT +E+ IK L FFA+S+ +V N+V +
Sbjct: 2 HESTFWTVEEVDMTFDCEHFST---LTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEV 58
Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQY 165
E + + Q E +HS + +I +L D+ E LFN +PSI KA WA ++
Sbjct: 59 QILEAKMFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKW 118
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
+ +S V + EG++F FA I L + M G+ +
Sbjct: 119 IASDTSFD--------------TRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNE 164
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I RDE LH +F + I + ++ EA +E + E++P +
Sbjct: 165 LISRDEGLHTDFACLLHKYINNK---------CTVIEDIVREAVAIEQEFLSESLPVSLI 215
Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
G+N QY++F+A+R +G + ++ + NPF +M E I L+ + NFFE R T YQ+
Sbjct: 216 GMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERRETNYQK 273
Query: 346 G 346
G
Sbjct: 274 G 274
>gi|15079087|ref|NP_149839.1| 376L [Invertebrate iridescent virus 6]
gi|82012049|sp|Q91FE8|RIR2_IIV6 RecName: Full=Probable ribonucleoside-diphosphate reductase small
subunit 376L; AltName: Full=Ribonucleotide reductase
small subunit
gi|15042456|gb|AAK82236.1|AF303741_377 376L [Invertebrate iridescent virus 6]
Length = 360
Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats.
Identities = 79/349 (22%), Positives = 137/349 (39%), Gaps = 31/349 (8%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
N P Y + K+ +HW+P+EVPM DD+ WK N L D++R + FF
Sbjct: 7 RNYYKPFTYPEFYNKWDKHEKSHWLPSEVPMHDDVNDWK--NRLNDNQRDFLTNIFRFFT 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
+ VA+ PE + A E VH + Y++ +LG+ E + +
Sbjct: 65 QGDVDVASAYYTQYLPFFKLPEVTMMMGGFAGREGVHIDAYSYLLETLGMPEA-TYKEFL 123
Query: 151 EVPSITAKANWALQYTQT--LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
+ K ++ +++ + + T + + + +F EGM ++ FA +
Sbjct: 124 MYEEMKDKQDYIKKFSDSRHILGKGEENLTTEDKEHIAAGIALFSGFTEGMQLFSTFAML 183
Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTM 264
L M G+ + + + DE+ H I++ EN Q+ +
Sbjct: 184 LIFPLNGFMKGMGQIVTWSIVDETQHTEGMIELFKVFVEENKTGDQPIRPSVLQETVYKI 243
Query: 265 LHEATLLEIAYAHETMP------------------KGFVGLNAPSCEQYMQFIANRRCHQ 306
E LE A+ K F GL + Y+++IA+RR +
Sbjct: 244 AKEMVGLEEAFIDLVFKKYKDEPINDDNDLETKDNKDFFGLTPQRLKAYIKYIADRRLNL 303
Query: 307 IGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQ-QGAELKW 351
+G + +F Y NP P + +I+ NFFE R T+Y + W
Sbjct: 304 MGYKSIFNLEPYPTNPLPELEIMINAPTHTNFFENRSTDYANVSTKGTW 352
>gi|168186576|ref|ZP_02621211.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum C str. Eklund]
gi|169295422|gb|EDS77555.1| ribonucleoside-diphosphate reductase, beta subunit [Clostridium
botulinum C str. Eklund]
Length = 342
Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats.
Identities = 86/334 (25%), Positives = 165/334 (49%), Gaps = 13/334 (3%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ ++N + ++ + +KY WA E Y + NN W+P E+ + +D+ + + LTD ER
Sbjct: 16 ESIINGSTTNLREWNRIKYNWANELYRNMLNNFWIPEEISLNEDVKQF---SYLTDGERN 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ + F +S+ + N+ I R+++ PE L QAF+E +H+ ++ YI+ ++
Sbjct: 73 AFDKIISFLNFLDSIQSENLP-NISRYITAPEVSSILNIQAFQEEIHAQSYSYILDTVTN 131
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ R+ + + L + + ++ E + + EG++
Sbjct: 132 P------ITRDKIYDQWREDKNLLERNKFIAGIYQRFNENPTTENFLRTIMANYILEGIY 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF+ +L R KM + ++YI RDE HL ++I ++K EN ++T+ ++
Sbjct: 186 FYSGFSFFYTLARQGKMTATSTIFKYINRDEITHLILFQNIIKELKNENLDIFTESIIEE 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
R M+ EI + +G+N E+Y+++++N R + IGLE L+ TE+P
Sbjct: 246 FRMMMKTGVEHEIKWGQYVTNNEILGINNNLIEKYIKYLSNLRLNAIGLEVLYPEITEHP 305
Query: 320 FPWMSEVIDL-KKEKNFFETRVTEYQQGAELKWD 352
W+ L + +FFE +VT Y + A +D
Sbjct: 306 MEWIENFSKLNNTKTDFFEAKVTNYTKAAAFDFD 339
>gi|115378653|ref|ZP_01465803.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
aurantiaca DW4/3-1]
gi|115364319|gb|EAU63404.1| ribonucleoside-diphosphate reductase, beta subunit [Stigmatella
aurantiaca DW4/3-1]
Length = 288
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 89/276 (32%), Positives = 150/276 (54%), Gaps = 6/276 (2%)
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
+TD ER +I R + FFA+ +S+V NN+VL +Y+HL+ PE R YL RQ +EEA+H +
Sbjct: 1 MTDAERHLIHRLVAFFATGDSIVGNNLVLNLYKHLNAPEARMYLSRQLYEEALHVQFYLT 60
Query: 134 IITSLGLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
++ + D + F +PSI KA + L++ ++ + T++ + FL +L
Sbjct: 61 LLDTYVPDPADRAKAFAAIDNIPSIQRKARFCLKWMDSIHDLA-QLKTREDRRRFLLNLI 119
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
F EG++F+ FA + L + G+A ++ RDES H+ F + I + E P
Sbjct: 120 CFAGCIEGLFFFAAFAYVYFLRSKGLLHGLAAGTNWVFRDESTHMAFAFEAIRVARQEEP 179
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
L+ Q M+ EA E +A + + G GL+ QY++++A++R +GL
Sbjct: 180 DLFDARMQADVVAMMREAVECETLFAQDLLSGGVAGLSVQEMRQYLEYVADQRLTMLGLA 239
Query: 311 PLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
P+F+ +N P+M + D+++ NFFE RV+ YQ
Sbjct: 240 PVFRV-KNSLPFMD-LQDVQELTNFFERRVSAYQVA 273
>gi|74229799|ref|YP_309003.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV]
gi|72259713|gb|AAZ67484.1| ribonucleotide reductase small subunit (rr2) [Trichoplusia ni SNPV]
Length = 318
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 87/326 (26%), Positives = 144/326 (44%), Gaps = 26/326 (7%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
L P+ W+ Y A + HW E+ M D W N L D ER +K L FF
Sbjct: 5 SRKTLFPIVNEDLWQSYKKALDCHWKVEEIDMSKDFDDWN--NKLNDKERFFLKHVLAFF 62
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LF 146
A+++ +V NI+ + + E + +Q E VH+ + ++ D E +
Sbjct: 63 AAADVIVNTNIIEHMQSAVPEMEASFFYAQQTSIECVHTEMYNILVVEYIKDPQECDRIL 122
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
N + S+ KA WA ++ ++ + V + + EG++F FA
Sbjct: 123 NAIEHIDSVKRKATWAQKWIES-------------QTATFAERMVAFAIVEGVFFSGSFA 169
Query: 207 QILSLG--RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
I + + + G+ + I RDE LH +F N+ + K + K M
Sbjct: 170 AIYYIKDTKKGALPGLTYSNELISRDEGLHTDFACLYYNKYIAKED----KLSESKVLNM 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
EA +E + +P +G+NA S +Y++F+A+R ++G E FK T NPF +M+
Sbjct: 226 FKEAVDIEKDFFTNALPVAMLGMNAHSMCEYIEFVADRLLIELGYEKYFK-TLNPFEFMN 284
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
I L+ + NFFE RV EY++
Sbjct: 285 -NISLEGKTNFFEKRVGEYKRFGAAN 309
>gi|317060491|ref|ZP_07924976.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. D12]
gi|313686167|gb|EFS23002.1| ribonucleoside-diphosphate reductase subunit beta [Fusobacterium
sp. D12]
Length = 344
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 86/356 (24%), Positives = 160/356 (44%), Gaps = 24/356 (6%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ E ++ +++++ +++ L +K+ WA + Y + N W+P +V + D
Sbjct: 2 DRKRLFNPEGNDSLLERKIIKGNSTNLFNLNNVKFSWATQLYRTMMANFWIPEKVDLTQD 61
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ LT ER L F +S+ NN+ I +++ PE L Q F+E
Sbjct: 62 KNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNLP-NISDYITAPEVNLLLSIQTFQE 117
Query: 125 AVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
A+HS ++QYII S+ E +++ +R+ + + + Q Q ++
Sbjct: 118 AIHSQSYQYIIESILPKESRDLIYDKWRDDKVLFERNRFIAQIYQDFI--------EETS 169
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
+ + + + E ++FY GF L NKMVG ++ + I RDE H+ +I
Sbjct: 170 DQNFAKVLIANYLLESLYFYNGFNFFYLLASRNKMVGTSDVIRLINRDELSHVVLFQKII 229
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+IK +++ R M A EI + + +G+ + E Y +++AN
Sbjct: 230 REIKA---ENHNFFEEEEIRAMFRTAVEQEILWTEHIIGNRILGITTETTEAYTKWLANE 286
Query: 303 RCHQIGLEPLFKY-TENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
R IGL P+++ T+NP+ + D + + NFFE VT Y + + WD
Sbjct: 287 RLRTIGLAPMYEEFTKNPYKHLERFADTEGDGNVKSNFFEGTVTSYNMSSSIDGWD 342
>gi|269865122|ref|XP_002651812.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063829|gb|EED42244.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 336
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 76/304 (25%), Positives = 130/304 (42%), Gaps = 29/304 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ + P++Y WE Y + W EV M D + + LT +E+
Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D
Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LFN +PSI KA WA ++ + +S V + EG
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD--------------TRCVAFACVEG 188
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + I +
Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNK---------C 239
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
++ EA +E + E++P +G+N QY++F+A+R +G ++ + +
Sbjct: 240 TVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGERKIYTFLTH 299
Query: 319 PFPW 322
W
Sbjct: 300 SISW 303
>gi|261419130|ref|YP_003252812.1| ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61]
gi|319765947|ref|YP_004131448.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
gi|261375587|gb|ACX78330.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. Y412MC61]
gi|317110813|gb|ADU93305.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
Length = 346
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 90/328 (27%), Positives = 160/328 (48%), Gaps = 19/328 (5%)
Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N R S+V + Y WA+ KY N W P E+ M D+ + LTD E+
Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF---PQLTDREQDAF 78
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
+ +G A +S+ + + ++++P ++ A +E +H+H++ Y+++SL
Sbjct: 79 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ E+F+ +R P++ + ++ + ++ + E L VF V+ EG++
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEEPNVEHLLRSIVFDVILEGLF 189
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
R +A LEI +A E + G++ E Y++F AN R HQ+G + F Y NP
Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309
Query: 320 FPWM--SEVIDLKKEKNFFETRVTEYQQ 345
W+ E +DL + +FFE + +Y +
Sbjct: 310 LRWIKAYEEVDL-GKSDFFEQKPRQYTK 336
>gi|284929768|ref|YP_003422290.1| ribonucleotide reductase, subunit beta [cyanobacterium UCYN-A]
gi|284810212|gb|ADB95909.1| ribonucleotide reductase, beta subunit [cyanobacterium UCYN-A]
Length = 354
Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats.
Identities = 86/365 (23%), Positives = 164/365 (44%), Gaps = 30/365 (8%)
Query: 1 MANNTGLS--PIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPT 57
+ T +S PI + ++++ + + ++ QL ++Y WA Y N W+P
Sbjct: 5 IDKRTVMSTNPIFNPDGDDAIENRAIWFGNTTNLMQLNDVRYSWAVGLYQQMRENFWIPQ 64
Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
++ + D+ + + LT+DER L + +S+ NI + ++ PE +
Sbjct: 65 KLDITQDVTDY---SNLTEDERYAYDGILSYLTFLDSIQTCNIP-HLKNSITAPEVSLCM 120
Query: 118 LRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFT 175
Q +E +H+ ++QYII ++ + +++ +RE + ++ + + Q
Sbjct: 121 AEQISQEGMHNQSYQYIIETIVPPDRRNQVYEFWREDKVLRSRCEFIAKIYQKYID---- 176
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
D E + + EG++FY GF +L M G A+ ++ I RDE H+
Sbjct: 177 ----DPTAENYFTALMADFLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHV 232
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
+I + + PH ++ M A E + + + +G+ S EQY
Sbjct: 233 RLYQKLIPEARKVFPH-----STEQIYEMFDTAVNHECRWTNHIVGSNILGITESSTEQY 287
Query: 296 MQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAE 348
+++AN R IGLEPL+ ++T++P+ + D KK + NFFE+ VT Y +
Sbjct: 288 TKYLANIRLRSIGLEPLYTGEEFTKSPYSHLERFSDTKKDGHTKANFFESTVTSYVMSSG 347
Query: 349 LK-WD 352
+ WD
Sbjct: 348 VSGWD 352
>gi|307151334|ref|YP_003886718.1| ribonucleotide reductase [Cyanothece sp. PCC 7822]
gi|306981562|gb|ADN13443.1| ribonucleotide reductase [Cyanothece sp. PCC 7822]
Length = 355
Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats.
Identities = 84/363 (23%), Positives = 156/363 (42%), Gaps = 28/363 (7%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
++ ++PI ++++ M +++ QL ++Y WA Y N W+P +
Sbjct: 8 LSERMPITPIFNPNGDDRIENRTMWFGNITNLMQLNDVRYTWAVGLYKQMRENFWIPERL 67
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D+ + LT+DER + L + +S+ NI + ++ PE +
Sbjct: 68 DITQDVTDY---WNLTEDERYAFEGILSYLTFLDSVQTCNIP-HLKASVTAPEISLCMAE 123
Query: 120 QAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
Q +E +H+ +QY+I ++ E+++ +R + A+ + Q +
Sbjct: 124 QISQEGMHNQAYQYMIETIIPLERRSEVYDFWRTDKVLKARCEFIAGLYQKYINQ----- 178
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
+ + + + EG++FY GF +L M G A+ ++ I RDE H+
Sbjct: 179 ---PNIDNYFTALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRL 235
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+I + PH K M A E + + + +G+ S EQY +
Sbjct: 236 YQKIIAEAMQTFPH-----SVDKVYEMFDTAVHHECRWTNHIVGDNILGITESSTEQYTK 290
Query: 298 FIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK 350
++AN R IGL+PL+ KY ++P+ + D KK + NFFE VT Y + +
Sbjct: 291 YLANIRLKAIGLKPLYADEKYQKSPYSHLERFSDTKKDAHTKANFFEATVTSYVMSSGVT 350
Query: 351 -WD 352
WD
Sbjct: 351 GWD 353
>gi|218249013|ref|YP_002374384.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801]
gi|218169491|gb|ACK68228.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8801]
Length = 344
Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats.
Identities = 83/357 (23%), Positives = 152/357 (42%), Gaps = 28/357 (7%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
++PI ++++ + + ++ QL ++Y WA Y N W+P + + D+
Sbjct: 3 INPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDV 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ LTDDER L + +S+ NI + ++ PE + Q +E
Sbjct: 63 TDY---ANLTDDERYAYDGILSYLTFLDSVQTCNIP-HLKSSVTAPEVSLCMAEQISQEG 118
Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
+H+ ++QYII ++ E ++++ +R + + + Q
Sbjct: 119 MHNQSYQYIIETIIPPERRTQVYDFWRTDKVLKERCEFIASLYQKYIDI--------PTS 170
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
E + + EG++FY GF +L M G A+ ++ I RDE H+ +I
Sbjct: 171 ENYFVALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 230
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ + PH + M A E + + + +G+ S EQY +++AN R
Sbjct: 231 EARKVFPH-----SVDQIYDMFDRAVKYECQWTNHIVGNNILGITEASTEQYTKYLANIR 285
Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
IGL+PL+ Y ++P+ + D KK + NFFE VT Y + + WD
Sbjct: 286 LRSIGLDPLYPDIKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGITGWD 342
>gi|297530897|ref|YP_003672172.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
gi|297254149|gb|ADI27595.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
Length = 346
Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats.
Identities = 90/328 (27%), Positives = 160/328 (48%), Gaps = 19/328 (5%)
Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N R S+V + Y WA+ KY N W P E+ M D+ + LTD E+
Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF---PQLTDREQDAF 78
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
+ +G A +S+ + + ++++P ++ A +E +H+H++ Y+++SL
Sbjct: 79 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ E+F+ +R P++ + ++ + ++ + E L VF V+ EG++
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEEPNVENLLRSIVFDVILEGLF 189
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELSDF 249
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
R +A LEI +A E + G++ E Y++F AN R HQ+G + F Y NP
Sbjct: 250 VRETFTKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309
Query: 320 FPWM--SEVIDLKKEKNFFETRVTEYQQ 345
W+ E +DL + +FFE + +Y +
Sbjct: 310 LRWIKAYEEVDL-GKSDFFEQKPRQYTK 336
>gi|257062099|ref|YP_003139987.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802]
gi|256592265|gb|ACV03152.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 8802]
Length = 355
Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats.
Identities = 83/357 (23%), Positives = 152/357 (42%), Gaps = 28/357 (7%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
++PI ++++ + + ++ QL ++Y WA Y N W+P + + D+
Sbjct: 14 INPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDITQDV 73
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ LTDDER L + +S+ NI + ++ PE + Q +E
Sbjct: 74 TDY---ANLTDDERYAYDGILSYLTFLDSVQTCNIP-HLKSSVTAPEVSLCMAEQISQEG 129
Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
+H+ ++QYII ++ E ++++ +R + + + Q
Sbjct: 130 MHNQSYQYIIETIIPPERRTQVYDFWRTDKVLKERCEFIASLYQKYID--------HPTS 181
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
E + + EG++FY GF +L M G A+ ++ I RDE H+ +I
Sbjct: 182 ENYFVALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 241
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ + PH + M A E + + + +G+ S EQY +++AN R
Sbjct: 242 EARKVFPH-----SVDQIYDMFDRAVKYECQWTNHIVGNNILGITEASTEQYTKYLANIR 296
Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
IGL+PL+ Y ++P+ + D KK + NFFE VT Y + + WD
Sbjct: 297 LRSIGLDPLYPDIKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGITGWD 353
>gi|172036555|ref|YP_001803056.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp.
ATCC 51142]
gi|171698009|gb|ACB50990.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp.
ATCC 51142]
Length = 352
Score = 191 bits (486), Expect = 9e-47, Method: Composition-based stats.
Identities = 84/357 (23%), Positives = 157/357 (43%), Gaps = 28/357 (7%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
++PI E ++++ + + ++ QL ++Y WA Y N W+P + + D+
Sbjct: 11 INPIFNPEGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWIPQRLDVTQDV 70
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ LTDDER L + +S+ NI + ++ PE + Q +E
Sbjct: 71 TDY---ANLTDDERYAYDGILSYLTFLDSVQTCNIP-HLKSSITAPEISLCMAEQISQEG 126
Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
+H+ ++QY+I ++ + ++++ +R + + + + Q DA
Sbjct: 127 MHNQSYQYLIETIIPPDRRTQVYDFWRTDKVLKDRCEFIAKLYQKYID--------DATP 178
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
E + + EG++FY GF +L M G A+ ++ I RDE H+ +I
Sbjct: 179 ENYFIALMADFLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 238
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ + PH ++ M A E + + + +G+ S E+Y +++AN R
Sbjct: 239 EARKVFPH-----SVEQIYEMFDMAVNYECRWTNHIVGNNILGITESSTEKYTKYLANIR 293
Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
IGLEPL+ Y ++P+ + D KK + NFFE VT Y + + WD
Sbjct: 294 LRSIGLEPLYPEPKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGVTGWD 350
>gi|15613065|ref|NP_241368.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus
halodurans C-125]
gi|14195134|sp|Q9KFH7|RIR2_BACHD RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|10173115|dbj|BAB04221.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus
halodurans C-125]
Length = 345
Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 81/332 (24%), Positives = 157/332 (47%), Gaps = 17/332 (5%)
Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
+LN +S +V +++ WA+ Y + N W P E+ M D + + LT+ E+
Sbjct: 21 ILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPT---LTETEQEAF 77
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
K+ +G A +S+ + + +L++ + +F+E VH+ ++ Y+++SL
Sbjct: 78 KKIIGLLAFLDSVQTD-YSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKA 136
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ E+F ++ + + + + + + + + V+ V+ EG+
Sbjct: 137 TQDEIFEYWKHDDVLKERNEFIIDGYEKFVD--------NPTPKTFLESIVYDVILEGLN 188
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R KMV + YI RDE LH+ ++ ++ +E P L T+E +
Sbjct: 189 FYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTF 248
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319
+T L +A LE + + G+N E Y+ FIAN+R Q+G+E + + NP
Sbjct: 249 VKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGMEKPYPEIKHNP 308
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELK 350
W+ D+ + +FFE + +Y + +
Sbjct: 309 MKWIRAYEDVNSGKSDFFEQKSRQYAKVSADN 340
>gi|56419447|ref|YP_146765.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus
kaustophilus HTA426]
gi|56379289|dbj|BAD75197.1| ribonucleoside-diphosphate reductase beta subunit [Geobacillus
kaustophilus HTA426]
Length = 346
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 90/328 (27%), Positives = 160/328 (48%), Gaps = 19/328 (5%)
Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N R S+V + Y WA+ KY N W P E+ M D+ + LTD E+
Sbjct: 22 IINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQF---PQLTDREQDAF 78
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
+ +G A +S+ + + ++++P ++ A +E +H+H++ Y+++SL
Sbjct: 79 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 137
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ E+F+ +R P++ + ++ + ++ + E L VF V+ EG++
Sbjct: 138 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEEPNVENLLRSIVFDVILEGLF 189
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E
Sbjct: 190 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELADF 249
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
R +A LEI +A E + G++ E Y++F AN R HQ+G + F Y NP
Sbjct: 250 VRNTFMKAAELEIEWAREIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 309
Query: 320 FPWM--SEVIDLKKEKNFFETRVTEYQQ 345
W+ E +DL + +FFE + +Y +
Sbjct: 310 LRWIKAYEEVDL-GKSDFFEQKPRQYTK 336
>gi|126654703|ref|ZP_01726237.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110]
gi|126623438|gb|EAZ94142.1| hypothetical protein CY0110_09717 [Cyanothece sp. CCY0110]
Length = 352
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 83/358 (23%), Positives = 154/358 (43%), Gaps = 28/358 (7%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
++PI ++++ + + ++ QL ++Y WA Y N W+P + + D
Sbjct: 10 SINPIFNPGGDDAIENRSIWFGNTTNLMQLNDVRYAWAVGLYQQMRENFWIPQRLDVTQD 69
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ + LTDDER L + +S+ NI + ++ PE + Q +E
Sbjct: 70 VTDY---ANLTDDERYAYDGILSYLTFLDSVQTCNIP-HLKSSITAPEISLCMAEQISQE 125
Query: 125 AVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
+H+ ++QY+I ++ E +++ +R + + + + Q D
Sbjct: 126 GMHNQSYQYLIETIIPPERRTQVYEFWRTDTVLKDRCEFIAKLYQKYID--------DPT 177
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
E + + EG++FY GF +L M G A+ ++ I RDE H+ +I
Sbjct: 178 SENYFIALMADFLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLI 237
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+ + PH ++ M A E + + + +G+ S E+Y +++AN
Sbjct: 238 PEARKVFPH-----SVEQIYEMFDMAVNYECRWTNHIVGNNILGITESSTEKYTKYLANI 292
Query: 303 RCHQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
R IGLEPL+ Y ++P+ + D KK + NFFE VT Y + + WD
Sbjct: 293 RLRSIGLEPLYPEPKYNKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGVTGWD 350
>gi|47213103|emb|CAF89523.1| unnamed protein product [Tetraodon nigroviridis]
Length = 407
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 82/299 (27%), Positives = 129/299 (43%), Gaps = 43/299 (14%)
Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPEC 113
W+ +V + DL W+S L DDER I L FFA+S+ +V N+V + + E
Sbjct: 135 WL--QVDLSKDLQHWES---LKDDERFFISHVLAFFAASDGIVNENLVERFTQEVQVTEA 189
Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLS 170
R + Q E +HS + +I + + E LFN +P + KA+WAL +
Sbjct: 190 RCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIETLPCVKKKADWALNWIGNQK 249
Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
+ + V + EG++F FA I L + M G+ + I RD
Sbjct: 250 AS-------------YGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRD 296
Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
E LH +F + + K Q ++ A +E + E +P +G+N
Sbjct: 297 EGLHCDFACLMFKHLL-------HKPSAQTVGAIIRNAVEIEQEFLTEALPVKLIGMNCQ 349
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
++Y++FI ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 350 LMKRYIEFIY--------------RAENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVM 393
>gi|218442220|ref|YP_002380549.1| ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424]
gi|218174948|gb|ACK73681.1| Ribonucleoside-diphosphate reductase [Cyanothece sp. PCC 7424]
Length = 355
Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats.
Identities = 83/356 (23%), Positives = 157/356 (44%), Gaps = 28/356 (7%)
Query: 8 SPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+PI + ++++ M +++ QL ++Y WA Y N W+P + + D+
Sbjct: 15 TPIFNPDGDDRIENRTMWFGNITNLMQLNDVRYNWAVGLYKQMRENFWIPERLDITQDVT 74
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ LTD+ER L + +S+ NI + ++ PE + Q +E +
Sbjct: 75 DY---WNLTDEERYAFDGILSYLTFLDSIQTCNIP-HLKSSVTAPEISLCMAEQISQEGM 130
Query: 127 HSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ +QY+I ++ ++++ +R + A+ + Q T +
Sbjct: 131 HNQAYQYMIETIIPLEKRNQVYDFWRTDKVLKARCEFIAGLYQKYID------TPSIENY 184
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
F+ + + + EG++FY GF +L M G A+ ++ I RDE H+ +I +
Sbjct: 185 FVALMADY--LLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQRIIVE 242
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
PH ++ M A E + + + +G+ S EQY +++AN R
Sbjct: 243 AMETFPH-----SVEQIYEMFDTAVQHECRWTNHIVGDNILGITESSTEQYTKYLANHRL 297
Query: 305 HQIGLEPLFK---YTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
+ IGL+PL++ Y ++P+ + D KK + NFFE VT Y + + WD
Sbjct: 298 NTIGLKPLYEDEKYKKSPYSHLERFSDTKKDAHTKANFFEATVTSYVMSSGVTGWD 353
>gi|138894466|ref|YP_001124919.1| ribonucleoside-diphosphate reductase subunit beta [Geobacillus
thermodenitrificans NG80-2]
gi|196247935|ref|ZP_03146637.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16]
gi|134265979|gb|ABO66174.1| Ribonucleoside-diphosphate reductase beta subunit [Geobacillus
thermodenitrificans NG80-2]
gi|196212719|gb|EDY07476.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. G11MC16]
Length = 344
Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats.
Identities = 90/328 (27%), Positives = 160/328 (48%), Gaps = 19/328 (5%)
Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
M+N R S+V + Y WA+ KY N W P E+ M D+ + LT E+
Sbjct: 20 MINGRCSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMAQDVKQF---PQLTAREQDAF 76
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
+ +G A +S+ + + ++++P ++ A +E +H+H++ Y+++SL
Sbjct: 77 LKIIGLLALLDSIQTD-YAGRVADYITDPSINALMIMLAQQEVIHNHSYSYVLSSLVPKA 135
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ E+F+ +R P++ + ++ + + + E L VF V+ EG++
Sbjct: 136 KQDEVFDFWRNEPTLRKRNDFVTN--------GYKAFAEKPNVENLLRSIVFDVILEGLF 187
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E
Sbjct: 188 FYSGFAFFYNLARQQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYRTPELADF 247
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
+R+ +A LEI +A E + G++ E Y++F AN R HQ+G + F Y NP
Sbjct: 248 ARSTFMKAAELEIEWAGEIIGNDIDGIDLADLEAYIKFYANVRAHQLGFDRPFDGYRTNP 307
Query: 320 FPWM--SEVIDLKKEKNFFETRVTEYQQ 345
W+ E +DL + +FFE + +Y +
Sbjct: 308 LRWIKAYEEVDL-GKSDFFEQKPRQYTK 334
>gi|332708567|ref|ZP_08428541.1| ribonucleotide reductase, beta subunit [Lyngbya majuscula 3L]
gi|332352664|gb|EGJ32230.1| ribonucleotide reductase, beta subunit [Lyngbya majuscula 3L]
Length = 344
Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats.
Identities = 81/357 (22%), Positives = 150/357 (42%), Gaps = 28/357 (7%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
++PI + + + + + ++ QL ++Y WA Y N W+P ++ + D+
Sbjct: 3 INPIFNPDGDDKTEHRSIWFGNTTNLMQLNDVRYAWAIGLYQQMRENFWIPQKLDLTQDV 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ + LT ER L + +S+ NI I ++ PE + Q +E
Sbjct: 63 TDY---SNLTPAERYAYDGILSYLTFLDSVQTCNIP-HIKSSITAPEVSLCMAEQISQEG 118
Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
+H+ ++QYII ++ E +++ +R + + + + Q +
Sbjct: 119 MHNQSYQYIIETVIPTEHRSKVYEFWRTDKVLRDRCEFVASFYQKYVD--------NPTP 170
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
E + + EGM+FY GF +L M G A+ ++ I RDE H+ +I
Sbjct: 171 ENYFVSLLADFLLEGMYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 230
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
P+ ++ M A E + + + +G+ S E Y +++AN R
Sbjct: 231 MAMDVFPYSS-----EQIYEMFATAVEHECRWTNHIVGNDILGITERSTEHYTKYLANIR 285
Query: 304 CHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
IGL+PL+ Y ++P+ + D KK + NFFE VT Y + + WD
Sbjct: 286 LRSIGLDPLYKGENYQKSPYSHLERFSDTKKDAHTKANFFEASVTSYVMSSGVSGWD 342
>gi|307171465|gb|EFN63309.1| Ribonucleoside-diphosphate reductase subunit M2 [Camponotus
floridanus]
Length = 343
Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats.
Identities = 72/316 (22%), Positives = 128/316 (40%), Gaps = 42/316 (13%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
++ + +Q E+ N + + +L + + P++Y W+ Y A + W EVP
Sbjct: 42 LSKTKAVQKVQLKEE-FNPELEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASFWTIEEVP 100
Query: 61 MQD-DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D W+ L DER I L FFA+S+ +V N++ + + E R +
Sbjct: 101 LHKLDKKDWEE--KLNSDERYFISHVLAFFAASDGIVNENLIERFSQEVKIAEARCFYGF 158
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
Q E +HS + +I + D E LFN +PS+ KANWAL +
Sbjct: 159 QIAIENIHSEMYSLLIETYISDPKEKDFLFNAIETLPSVGKKANWALNWINH-------- 210
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
E F I L + M G+ + I RDE LH +
Sbjct: 211 --------------------ESATFPERVVAIFWLKKRGVMPGLTFSNELISRDEGLHCD 250
Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
F + I + ++ ++++ +A +E + + +P +G+N Y+
Sbjct: 251 FACLMFKHIVQKPSF-------ERVKSIIMDAVEIEQEFLTQALPVQLIGMNCTLMCSYI 303
Query: 297 QFIANRRCHQIGLEPL 312
+F+A+R +G E +
Sbjct: 304 EFVADRLFVALGFEKV 319
>gi|115525181|ref|YP_782092.1| ribonucleotide reductase [Rhodopseudomonas palustris BisA53]
gi|115519128|gb|ABJ07112.1| ribonucleotide reductase [Rhodopseudomonas palustris BisA53]
Length = 223
Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats.
Identities = 137/189 (72%), Positives = 153/189 (80%)
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
++TQ L P+F TGT +AD+ FL+DL FYVVFEGMWFYTGFAQILSLGR NKMVGIAEQ
Sbjct: 35 KHTQHLDDPTFVTGTVEADRAFLRDLVAFYVVFEGMWFYTGFAQILSLGRRNKMVGIAEQ 94
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
YQYI+RDES+HLNFGID+INQIKIENP LWT FQ++ R ML EA LE AY +TMP+G
Sbjct: 95 YQYILRDESIHLNFGIDIINQIKIENPELWTAGFQEELRGMLREAAELEAAYCRDTMPRG 154
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
F GLNA CEQYM FI NRRC Q+GL P+F ENPFPWMSE +DLKKEKNFFETRV EY
Sbjct: 155 FFGLNAALCEQYMHFITNRRCAQLGLAPIFAEVENPFPWMSETMDLKKEKNFFETRVIEY 214
Query: 344 QQGAELKWD 352
Q G L WD
Sbjct: 215 QNGGALTWD 223
>gi|295401051|ref|ZP_06811025.1| Ribonucleoside-diphosphate reductase [Geobacillus
thermoglucosidasius C56-YS93]
gi|312112173|ref|YP_003990489.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1]
gi|294976844|gb|EFG52448.1| Ribonucleoside-diphosphate reductase [Geobacillus
thermoglucosidasius C56-YS93]
gi|311217274|gb|ADP75878.1| ribonucleotide reductase [Geobacillus sp. Y4.1MC1]
Length = 346
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 85/329 (25%), Positives = 158/329 (48%), Gaps = 19/329 (5%)
Query: 23 RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
R++N +S +V + Y WA+ KY N W P E+ M D+ + LT+ E+
Sbjct: 21 RIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF---PLLTEREQDA 77
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
+ +G A +S+ + + ++++ ++ A +E +H+H++ Y+++SL
Sbjct: 78 FLKIIGLLALLDSIQTD-YAGRVADYITDSSINALMIMLAQQEVIHNHSYSYVLSSLVTK 136
Query: 142 --EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
+ E+F +R P + + ++ + ++ + E L V+ V+ EG+
Sbjct: 137 SKQDEVFEFWRNEPILRKRNDFVTN--------GYKAFAENPNVENLLKSIVYDVILEGL 188
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
+FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E +
Sbjct: 189 FFYSGFAFFYNLARNQKMVATSTMINYINRDEHIHVDLFAKIFKEVLSEYPEYNTPELAE 248
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTEN 318
+ +A LEI +A+ + G++ Y++F AN R HQ+G E F Y N
Sbjct: 249 FVQATFTKAAELEIEWANYIIGNDIDGIDMHDLSAYIKFYANVRAHQLGFERPFAGYRTN 308
Query: 319 PFPWM--SEVIDLKKEKNFFETRVTEYQQ 345
P W+ E +DL + +FFE + +Y +
Sbjct: 309 PLRWIKAYEEVDL-GKSDFFEQKSRQYTK 336
>gi|291239432|ref|XP_002739627.1| PREDICTED: hCG23833-like [Saccoglossus kowalevskii]
Length = 309
Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats.
Identities = 82/320 (25%), Positives = 139/320 (43%), Gaps = 30/320 (9%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPM-QDDLALWKSKNGLTDDERLMIKRNLGFF 89
P+K ++ + W E+ + DL W LT DER K LGFF
Sbjct: 3 RYVTPPIKNLDLYDMWKKHVRCFWTKDEINITSSDLREWND---LTPDERQFFKCILGFF 59
Query: 90 ASSESLVANNIVLAIYRHLSNP-ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
AS+ +V++N+ L + E R + Q E +HS T+ ++T+ +E E +
Sbjct: 60 ASTNIIVSDNLALRFLADPNISREARCFYSFQIAMENIHSETYIELLTAYVPEEKERNEL 119
Query: 149 YREVPSITA---KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
+ S K+ WA+++ + + V + V EG+ F + F
Sbjct: 120 LYSIISWPCLNVKSRWAVKWMN-------------DEFATYAERLVAFAVVEGIMFSSSF 166
Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
A I + ++ + G+ + ++I RDE LH F + +IK P R ++
Sbjct: 167 AGIYWIKQSGLLAGLTQANEFISRDEGLHCTFACTMYGKIKPRLPDTK-------VRKIV 219
Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSE 325
E +E + + K +G+N+ E Y+ F+ + +G E F NPFP+M
Sbjct: 220 LEGCEVEKLFVKHALRKPLLGMNSHLMETYVNFVTDNLLTDLGYEKEFGVN-NPFPFMD- 277
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
I ++ + NFFE RVTEY +
Sbjct: 278 NISMQGKTNFFERRVTEYTR 297
>gi|239826135|ref|YP_002948759.1| ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70]
gi|239806428|gb|ACS23493.1| Ribonucleoside-diphosphate reductase [Geobacillus sp. WCH70]
Length = 346
Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats.
Identities = 86/329 (26%), Positives = 158/329 (48%), Gaps = 19/329 (5%)
Query: 23 RMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
R++N +S +V + Y WA+ KY N W P E+ M D+ + LT+ E+
Sbjct: 21 RIINGKSSNVLNWDDIAYPWAYAKYKRMLANFWTPFEINMSQDVKQF---PNLTEREQDA 77
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
+ +G A +S+ + + ++++ ++ A +E +H+H++ Y+++SL
Sbjct: 78 FLKIIGLLALLDSIQTD-YAGRVADYITDSSINALMIMLAQQEVIHNHSYSYVLSSLVPK 136
Query: 142 --EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
+ E+F +R P + + ++ + ++ + E L V+ V+ EG+
Sbjct: 137 SKQDEVFEFWRNEPILRKRNDFVTN--------GYKAFAENPNVENLLKSIVYDVILEGL 188
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
+FY+GFA +L R KMV + YI RDE +H++ + ++ E P T E Q
Sbjct: 189 FFYSGFAFFYNLARNQKMVATSTMINYINRDEHIHVDLFAKIFKEVLNEYPEYNTPELAQ 248
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTEN 318
R +A LEI +A+ + G++ Y++F AN R HQ+G + F Y N
Sbjct: 249 FVRETFIKAAKLEIEWANYIIGNDIDGIDMHDLSAYIKFYANVRAHQLGFDRPFDGYRTN 308
Query: 319 PFPWM--SEVIDLKKEKNFFETRVTEYQQ 345
P W+ E +DL + +FFE + +Y +
Sbjct: 309 PLRWIKAYEEVDL-GKSDFFEQKSRQYTK 336
>gi|332971065|gb|EGK10035.1| ribonucleotide-diphosphate reductase beta subunit [Desmospora sp.
8437]
Length = 342
Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats.
Identities = 81/332 (24%), Positives = 157/332 (47%), Gaps = 17/332 (5%)
Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N RS +V ++ WA+ Y + N W P E+ M +D+ W L ++E++
Sbjct: 18 IINGRSSNVLNWDDCRFPWAYPLYKNMLANFWTPFEINMSEDIKQW---GRLAEEEQVAF 74
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
K+ +G A +S+ + + +L++ + +F+E VH+ ++ Y+++SL
Sbjct: 75 KKIIGLLAFLDSIQTDYSS-KVADYLTDSSLAALMTVLSFQEVVHNQSYSYVLSSLVTRR 133
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ E+F ++ + + + ++ Q + + V+ V+ EG+
Sbjct: 134 EQEEVFEYWKHDQVLRERNEFIVEGYQAF--------VEKPEPLTFLRSIVYDVILEGLN 185
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R KMV + YI RDE LH+ + + ++ E P L T+E +
Sbjct: 186 FYSGFAFFYNLARHQKMVSTSTMINYINRDEQLHVRLFVQIYRELLEEIPELNTEENRNF 245
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
A LEI + + F G+ Y++F+AN+R H++G E F Y +NP
Sbjct: 246 VTESFRRAAELEIRWGETVLGDRFDGIRPDELRAYIRFMANKRAHELGAERPFAGYRKNP 305
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELK 350
W+ D+ +++FFE + +Y + +
Sbjct: 306 MRWVIAYQDVNRGKQDFFEGKSRQYSKVSSDN 337
>gi|159030376|emb|CAO91271.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 355
Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats.
Identities = 85/357 (23%), Positives = 157/357 (43%), Gaps = 28/357 (7%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
+SPI ++++ + + ++ QL ++Y W+ Y N W+P + + D+
Sbjct: 14 ISPIFNPSGDDAIENRSIWFGNTTNLMQLNDVRYTWSVGLYQQMRENFWIPQRLDITQDV 73
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ LTD+ER L + +S+ NI + ++ PE + Q +EA
Sbjct: 74 TEY---GHLTDEERYAYDGILSYLTFLDSVQTCNIP-HLKGSVTAPEISLCMAEQISQEA 129
Query: 126 VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
+H+ ++QY+I ++ + E+++ +R + + + Q + +
Sbjct: 130 MHNQSYQYLIETIIPSDRRGEVYDFWRTDKVLKDRCEFIASLYQQYID------KQTTES 183
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
F+ L + + E ++FY GF +L M G A+ ++ I RDE H+ +I
Sbjct: 184 YFIALLADY--LLESLYFYNGFIFFYNLASRQLMSGSADVFKMINRDELSHVRLYQKLIP 241
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ PH ++ M A E + + + +G+ S EQY +++AN R
Sbjct: 242 EAMAIFPH-----SVEQIYEMFDSAVKHECCWTNHIVGNDILGITEYSTEQYTKYLANIR 296
Query: 304 CHQIGLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
IGLEPL+ KY ++P+ + D KK + NFFE VT Y + L WD
Sbjct: 297 LKAIGLEPLYREEKYNKSPYNHLERFSDTKKEGHTKANFFEATVTSYVMSSGLTGWD 353
>gi|323487827|ref|ZP_08093085.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus
donghaensis MPA1U2]
gi|323398561|gb|EGA91349.1| ribonucleotide-diphosphate reductase subunit beta [Planococcus
donghaensis MPA1U2]
Length = 348
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 86/334 (25%), Positives = 156/334 (46%), Gaps = 21/334 (6%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
+LN +S + + Y ++ Y + N W E+ MQDD+ W + L+ E+ +
Sbjct: 24 VLNGQSSGLLNWNDIAYPQMYDLYQALLANFWKAQEINMQDDIKQW---DSLSSVEKDVF 80
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GL 140
R AS +SL + A+ ++++ + + +EAVH+ ++ YI++SL
Sbjct: 81 LRINTQLASLDSLQTPTMSQAM-DYVTDSSFKAIFAVISQQEAVHTESYSYILSSLVSVS 139
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ E FN + P + + L ++ ++ + L L V + EG++
Sbjct: 140 EQNERFNQAKSDPVVQKR--------NELILDAYEEFRQNPTPQNLFKLSVNSINLEGIY 191
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY GFA L R KM+ + YI RDE H F I + ENP L T E Q
Sbjct: 192 FYAGFAFFYHLARQQKMLKTSTMISYIQRDEMQHAYFIAQFIRIMLTENPELHTDENIQY 251
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
T + +A LE +A + GL+ +Y++++AN+R Q+GL+ L++ NP
Sbjct: 252 IYTTIDKAVQLEKEWAQYIL-ADIEGLDLVEFGEYVEYLANKRLRQLGLDNLYEERSNPM 310
Query: 321 PWM----SEVIDLKKEKNFFETRVTEYQQGAELK 350
PW+ ++++ + +FFE + Y + ++
Sbjct: 311 PWIQVFGDDMMN-DTKSDFFEQKSRTYTKVSQTN 343
>gi|288554979|ref|YP_003426914.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
pseudofirmus OF4]
gi|288546139|gb|ADC50022.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus
pseudofirmus OF4]
Length = 344
Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats.
Identities = 80/345 (23%), Positives = 161/345 (46%), Gaps = 17/345 (4%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
+ N + S+V +++ WA+ Y + N W P E+ M D ++
Sbjct: 8 LYNPHAP-NASTGIINGESSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDTKQFQ 66
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
LT+ E+ K+ +G A +S+ + L + +L++ + +F+E VH+
Sbjct: 67 ---NLTETEQEAFKKIIGLLAFLDSVQTD-YSLKVADYLTDSSLVALMSVLSFQEVVHNQ 122
Query: 130 TFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
++ Y+++SL + E+F+ ++ P + + + + + ++ + + L
Sbjct: 123 SYSYVLSSLVPKATQDEIFDYWKNDPVLKERNEFIVDGYEEFAN--------NPTPDTLA 174
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
V+ V+ EG+ FY+GFA +L R KMV + YI RDE LH+ +V ++
Sbjct: 175 RSIVYDVILEGVNFYSGFAFFYNLARHQKMVSTSTMINYINRDEQLHVYLFTNVFKELLE 234
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
E+P L +E + + L A LE+ + + + + G+ + Y++FIAN+R Q+
Sbjct: 235 EHPELNNREMESFVKQSLTTAVELELKWYNYIIGEQIEGVTSDEMGSYLKFIANKRAKQL 294
Query: 308 GLEPLFK-YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELK 350
G + +F + N F W+ D+ + +FFE + +Y + +
Sbjct: 295 GYDHIFPEHRTNVFKWIKAYEDVNAAKSDFFEQKSRQYAKVSSDN 339
>gi|16332312|ref|NP_443040.1| hypothetical protein slr0591 [Synechocystis sp. PCC 6803]
gi|1653942|dbj|BAA18852.1| slr0591 [Synechocystis sp. PCC 6803]
Length = 355
Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats.
Identities = 79/357 (22%), Positives = 150/357 (42%), Gaps = 28/357 (7%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
++PI +V+++ + + ++ QL ++Y WA Y N W+P + + D+
Sbjct: 14 VTPIFNPTGNDSVENRTIWFGNTTNLMQLNDVRYNWAVGLYQQMRENFWIPQRLDITQDV 73
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ LT++ER L + +S+ NI + ++ PE + Q +E
Sbjct: 74 TDY---WNLTNEERYAFDGILSYLTFLDSVQTCNIP-HLKSSVTAPEISLCMAEQISQEG 129
Query: 126 VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
+H+ ++QY+I ++ E +++ +R + + + Q Q
Sbjct: 130 MHNQSYQYMIETIIPTEKRDKVYEFWRTDRVLKERCEYIAMLYQKYVD--------HPTQ 181
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
E + + EG++FY GF +L M G A+ ++ I RDE H+ +I
Sbjct: 182 ENYFIALMADYLLEGLYFYNGFIYFYNLASRMLMPGSADIFKMINRDELSHVRLYQKLIP 241
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ + M +A E + + + +G+ S EQY +++AN R
Sbjct: 242 EAMQ-----VFTHSTDQIYEMFDKAVEFECRWTNHIVGNNILGITESSTEQYTKYLANSR 296
Query: 304 CHQIGLEPLFKYT---ENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
IGL+PL+ ++P+ + D KK + NFFE VT Y + + WD
Sbjct: 297 LRAIGLDPLYTDARYGKSPYTHLERFSDTKKEAHTKANFFEATVTSYVMSSGVSGWD 353
>gi|170077010|ref|YP_001733648.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus
sp. PCC 7002]
gi|169884679|gb|ACA98392.1| ribonucleoside-diphosphate reductase, beta subunit [Synechococcus
sp. PCC 7002]
Length = 352
Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 79/355 (22%), Positives = 148/355 (41%), Gaps = 28/355 (7%)
Query: 9 PIQAGEKRVNVDDKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
PI + ++ + + +++ QL ++Y WA Y N W+P ++ + D+
Sbjct: 13 PIFNPDGNDDIAHRSIWFGETTNLMQLNDVRYPWAVGLYQQMRENFWIPQKLDITQDVTD 72
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
+ LTD ER L + +S+ N+ I ++ PE + Q +E +H
Sbjct: 73 YH---NLTDSERRAFDGILSYLTFLDSVQTCNLP-HIKSSITAPEISLCIAEQISQEGMH 128
Query: 128 SHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+ ++QY+I ++ + +++ +R + + + Q + E
Sbjct: 129 NQSYQYMIETIIPSDRRSAVYDFWRTDKVLRDRCEYIASNYQRYID--------NPTPEN 180
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
V + EG++FY GF +L M G A+ ++ I RDE H+ +I +
Sbjct: 181 YFTTLVADYLLEGLYFYNGFVFFYNLASRMLMPGSADIFKMINRDELSHVRLFQKLIPEA 240
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
H ++ M+ A E + + + +G+ S E Y +++AN R
Sbjct: 241 MATFDHSVDHIYE-----MVERAVQYECQWTNHIVGNDILGITEQSTEIYTKYLANIRLQ 295
Query: 306 QIGLEPLFK---YTENPFPWMSEVID----LKKEKNFFETRVTEYQQGAELK-WD 352
IGLEPL+K Y ++P+ + D + NFFE VT Y + + WD
Sbjct: 296 AIGLEPLYKGDQYKKSPYRHLERFSDTKKEGNTKANFFEAGVTSYVMSSGITGWD 350
>gi|56418235|gb|AAV91049.1| ribonucleotide reductase beta subunit [Grouper iridovirus]
Length = 384
Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 80/324 (24%), Positives = 135/324 (41%), Gaps = 20/324 (6%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P KY WA + + HW+ TEV ++DD+ WKS LT E+ I L F
Sbjct: 73 CFKPFKYSWAEDVRVKHERIHWVETEVNLRDDVTDWKS-GALTQQEKEFISCVLRLFTQL 131
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E R L A EA+H + + +LG+ + E ++ +
Sbjct: 132 DVEVGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YSAFVAY 190
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+T K + F + L V+ EG+ + F +L+
Sbjct: 191 KEMTDKLD-------------FMKSMDVSTIPNLARSLFKAVLNEGVSLFAAFVMLLAFQ 237
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
+ +M G+ + ++ +RDE++H+ + + E P L T++ + + A LE
Sbjct: 238 KRGRMKGMGKVVEWSVRDENIHVEGVSRLFETLCAEYPWLMTEKLVRDCKKDAERAAELE 297
Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVID 328
A+ GL S + Y+ ++ N R +GL L +ENP PW+ +I+
Sbjct: 298 FAFIDLAFSYCPALDGLTPSSVKNYVLYVINLRASHMGLPKLMASAPSENPLPWVKWLIE 357
Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
NFFE VTEY+ G W
Sbjct: 358 GADLTNFFENHVTEYETGGLTGSW 381
>gi|228861279|ref|YP_002854302.1| ribonucleotide reductase small subunit [Soft-shelled turtle
iridovirus]
gi|45550045|gb|AAS67856.1| ribonucleotide reductase small subunit [Rana grylio virus 9506]
gi|194307559|gb|ACF42289.1| ribonucleotide reductase small subunit [Soft-shelled turtle
iridovirus]
Length = 387
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 74/324 (22%), Positives = 134/324 (41%), Gaps = 20/324 (6%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F
Sbjct: 72 CFKPFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E R L A EA+H + + +LG+ + E + + +
Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+T K ++ + + L + V+ EG+ + F +L+
Sbjct: 190 GEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R+ KM G+ + ++ +RDE++H+ + + E P + TK+ + + LE
Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDLIELFKEDAERVAELE 296
Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
A+ + GL + Y+ ++ N R +GL L + P PW+ +ID
Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356
Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
NFFE VTEY+ G W
Sbjct: 357 GADLTNFFENHVTEYETGGLTGSW 380
>gi|56692684|ref|YP_164142.1| ribonucleoside-diphosphate reductase beta subunit [Singapore
grouper iridovirus]
gi|42517396|gb|AAS18062.1| ribonucleoside-diphosphate reductase beta subunit [Singapore
grouper iridovirus]
Length = 384
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 79/324 (24%), Positives = 135/324 (41%), Gaps = 20/324 (6%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P KY WA + + HW+ TEV ++DD+ WKS L+ E+ I L F
Sbjct: 73 CFKPFKYSWAEDIRVKHERIHWVETEVNLRDDVTDWKS-GALSQQEKEFISCVLRLFTQL 131
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E R L A EA+H + + +LG+ + E ++ +
Sbjct: 132 DVEVGGLYLDFLTQVFKCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YSAFVAY 190
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+T K + F + L V+ EG+ + F +L+
Sbjct: 191 KEMTDKLD-------------FMKSMDVSTIPNLARSLFKAVLNEGVSLFAAFVMLLAFQ 237
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
+ +M G+ + ++ +RDE++H+ + + E P L T++ + + A LE
Sbjct: 238 KKGRMKGMGKVVEWSVRDENIHVEGVSRLFETLCAEYPWLMTEKLVRDCKKDAERAAELE 297
Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVID 328
A+ GL S + Y+ ++ N R +GL L +ENP PW+ +I+
Sbjct: 298 FAFIDLAFSYCPALDGLTPSSVKNYVLYVINLRASHMGLPKLMASAPSENPLPWVKWLIE 357
Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
NFFE VTEY+ G W
Sbjct: 358 GADLTNFFENHVTEYETGGLTGSW 381
>gi|49237365|ref|YP_031646.1| ribonucleoside diphosphate reductase beta subunit-like protein
[Frog virus 3]
gi|47060183|gb|AAT09727.1| ribonucleoside diphosphate reductase beta subunit-like protein
[Frog virus 3]
Length = 387
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 74/324 (22%), Positives = 134/324 (41%), Gaps = 20/324 (6%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F
Sbjct: 72 CFKPFRYNWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E R L A EA+H + + +LG+ + E + + +
Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+T K ++ + + L + V+ EG+ + F +L+
Sbjct: 190 GEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R+ KM G+ + ++ +RDE++H+ + + E P + TK+ + + LE
Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDLIELFKEDAERVAELE 296
Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
A+ + GL + Y+ ++ N R +GL L + P PW+ +ID
Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356
Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
NFFE VTEY+ G W
Sbjct: 357 GADLTNFFENHVTEYETGGLTGSW 380
>gi|167462363|ref|ZP_02327452.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus
larvae subsp. larvae BRL-230010]
Length = 343
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 83/332 (25%), Positives = 166/332 (50%), Gaps = 16/332 (4%)
Query: 24 MLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N S+V ++ WA+ Y + N W+P EVPM D+ W + L D ER
Sbjct: 18 IINGQSSNVLNWDDCRFPWAYPMYRNMLRNFWIPDEVPMTADIKQWST--ELGDHERDTF 75
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
K+ +G A +S+ + + +L++ + +F+E VH+ ++ Y+++SL
Sbjct: 76 KKVIGLLAFLDSVQTD-YSGKVADYLTDSSLSALMSVLSFQEVVHNQSYSYVLSSLVPKS 134
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ E+F ++ + + ++ Q D + + V+ V+ EG++
Sbjct: 135 EQDEIFEYWKTDEVLRERNDFLAAGYQRFVD--------DPTPQTFMESVVYDVILEGLF 186
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA ++ R KM+G ++I RDE +H+ + ++ ENP L +E +
Sbjct: 187 FYSGFAFFYNMARNGKMLGTNTMIRFINRDEEIHVRLFTQIFRELIAENPELDNEETHEF 246
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
R +A LEIA++ + F G+ + ++Y++F+AN+R +++G+E F+ + N
Sbjct: 247 VRQTFRKAAELEIAWSEYIIGDRFDGVTSRDLDKYVRFMANKRVNELGIERPFEGHRRNN 306
Query: 320 FPWMSEV-IDLKKEKNFFETRVTEYQQGAELK 350
W+ + + +FFE+RVT+Y + ++
Sbjct: 307 LRWIKAYEENDAGKTDFFESRVTQYVKVSDDN 338
>gi|118197598|ref|YP_874310.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV]
gi|113472593|gb|ABI35800.1| ribonucleotide reductase small subunit [Ecotropis obliqua NPV]
Length = 341
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 84/334 (25%), Positives = 144/334 (43%), Gaps = 21/334 (6%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
+LP++ W +A + W E + D W+ L ER +K L FFA
Sbjct: 8 RKVILPIENQNLWRMDKTAMDCMWKVEEDDLSRDFDDWRH--KLCVQERFFLKHILAFFA 65
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFN 147
S++++V N++ + + E R + +Q E VHS + ++ + E L N
Sbjct: 66 SADTIVNINLIDYVRAAVPELEARYFYDQQILIENVHSEMYSLLVFEYIKNSEERNKLLN 125
Query: 148 MYREVPSITAKANWALQYTQTLSSPSF----------TTGTKDADQEFLQDLFVFYVVFE 197
+ + I KA WAL++T++ + + L + + + E
Sbjct: 126 AFDRIDCIKKKAQWALKWTESKWWQDYWVDPVLGCVQRRFRNKSYPSKLARRMIAFAIVE 185
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I + M G+ + I RDE LH +F N N K
Sbjct: 186 GIFFSGSFAAIFFIKTKGLMPGLTFSNELISRDEGLHTDFACMYYNNYIPIN----EKLS 241
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
Q+ +M EA +E + +P +G+NA +Y++F+A+R ++ F T
Sbjct: 242 PQQILSMFIEAVDIEKEFFTTALPCYLLGINATEMCKYIEFVADRLLVELRQPKHFN-TP 300
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
NPF +M+ I L+ + NFFE RV EY++ +
Sbjct: 301 NPFNFMT-NISLEGKTNFFERRVGEYKRFGAGQD 333
>gi|225734460|gb|ACO25228.1| hypothetical protein [Epizootic haematopoietic necrosis virus]
Length = 387
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 72/324 (22%), Positives = 132/324 (40%), Gaps = 20/324 (6%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F
Sbjct: 72 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E R L A EA+H + + +LG+ + E + + +
Sbjct: 131 DVEVGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+T K ++ + + L + V+ EG+ + F +L+
Sbjct: 190 EEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R KM G+ + ++ +RDE++H+ + + E P + ++ + + LE
Sbjct: 237 RRGKMKGMGKVVEWSVRDENMHVEGVSKLFETLNSEYPWVVNEDLIELFKEDAERVAELE 296
Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
A+ + GL + Y+ ++ N R +GL L + P PW+ +ID
Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRASNMGLPRLIERAPEACPIPWVKWLID 356
Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
NFFE VTEY+ G W
Sbjct: 357 GADLTNFFENHVTEYETGGLTGSW 380
>gi|297582631|ref|YP_003698411.1| ribonucleoside-diphosphate reductase [Bacillus selenitireducens
MLS10]
gi|297141088|gb|ADH97845.1| Ribonucleoside-diphosphate reductase [Bacillus selenitireducens
MLS10]
Length = 347
Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats.
Identities = 81/345 (23%), Positives = 146/345 (42%), Gaps = 15/345 (4%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P+ N + S + + Y ++ Y + N W E+ MQDD+ W
Sbjct: 10 PLLNPTHP-NRSTGLIQGEASGILNWNDIAYPHMYDLYQTLLANFWKAQEINMQDDIKQW 68
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
LT E+ + R AS +SL + + ++++P + A +EAVH+
Sbjct: 69 AE---LTPAEQDVFLRINTQLASLDSLQTPTMSQ-VMDYVTDPSFKAIFAIVAQQEAVHN 124
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ Y+++SL + + AK + +Q + ++ + + L +
Sbjct: 125 ESYSYVLSSLVNQQEQTRRFQE------AKEDPLIQRRNDVILSAYERFRQHPSPQHLFE 178
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L V + EG++FY GFA L R KM+ + YI RDE H F + + +
Sbjct: 179 LAVQSLNLEGVYFYAGFAFFYHLARQQKMMKTSTMISYIQRDEMQHAYFMSQFVRILLTD 238
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+P L T+E Q + A LE +A + G++ Y++++ N+R Q+G
Sbjct: 239 HPELNTRENVQYVYDAMASAAGLEQEWAAVIL-ADIDGIDLGEFNGYVEYLVNKRLRQLG 297
Query: 309 LEPLFKYTENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAELK 350
L LF +NP PW S+ + + + +FFE + Y +
Sbjct: 298 LSNLFPERDNPMPWIHVFSDTMMNQTKSDFFEQKSRSYTKVTSDN 342
>gi|115691069|ref|XP_001203692.1| PREDICTED: similar to ribonuleotide reductase small subunit,
partial [Strongylocentrotus purpuratus]
gi|115735426|ref|XP_798682.2| PREDICTED: similar to ribonuleotide reductase small subunit,
partial [Strongylocentrotus purpuratus]
Length = 258
Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats.
Identities = 77/302 (25%), Positives = 129/302 (42%), Gaps = 50/302 (16%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
+ W EV + +D W L +E+ + L FFA+S+ +V N+V + + P
Sbjct: 1 SFWTTEEVDLGEDWKDW---QKLKPEEKHFVTHVLAFFAASDGIVNENLVERFSQEVQIP 57
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168
E + + Q E +HS + +I + D E LFN + +P + KA+WAL++ +
Sbjct: 58 EAKCFYGFQIAMENIHSEMYSLLIDTYVKDPTEKHRLFNAIQTMPFVKKKADWALKWIAS 117
Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
+ F + L F V EG++F FA I + + G+ + I
Sbjct: 118 ------------DESTFAERLVAFAAV-EGIFFSGSFAAIFWFKKRGLLPGLTFSNELIS 164
Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
RDE LH +F + + + P +E ++ +A LE Y E +P +G+N
Sbjct: 165 RDEGLHCDFACLLFSHLNHPTPVSRIQE-------IIRDAVRLEEEYLSEALPVALIGMN 217
Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
A QY+QF+A+R ++ + NFFE RV EYQ+
Sbjct: 218 ARLMCQYIQFVADRLLMEL------------------------KSNFFEKRVGEYQKMNV 253
Query: 349 LK 350
+
Sbjct: 254 MT 255
>gi|116326775|ref|YP_803312.1| hypothetical protein TNAV2c_gp089 [Trichoplusia ni ascovirus 2c]
gi|102231783|gb|ABF70606.1| hypothetical protein [Trichoplusia ni ascovirus 2c]
Length = 269
Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats.
Identities = 76/279 (27%), Positives = 127/279 (45%), Gaps = 27/279 (9%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y A + W EV + DL+ W + L DDE+ IK L FFA+S+ +V N+V
Sbjct: 1 MYKKAEASFWTVEEVDLSKDLSDW---DKLKDDEKHFIKHILAFFAASDGIVNENLVERF 57
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
+ + E R + Q E VHS + +I + D E LFN +P I KA+W
Sbjct: 58 SQEVQITEARCFYGFQIAMENVHSEMYSLLIDTYIRDSDERDYLFNAIETLPCIKKKADW 117
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
AL++ + + + V + EG++F FA I L + + G+
Sbjct: 118 ALKWISS-------------NSANFAERIVAFAAVEGIFFSGSFASIFWLKKRGLLPGLT 164
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ I RDE LH +F + N + + P+ E +L EA ++E + + +P
Sbjct: 165 FSNELISRDEGLHTDFACLMYNYVVQKPPNSRVIE-------ILKEAVVIEKDFLTDALP 217
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
+G+N QY++F+A+R +++ E + +NP
Sbjct: 218 VRLLGMNCDLMSQYIEFVADRLLYELIGEKYYN-AKNPI 255
>gi|149182583|ref|ZP_01861054.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
SG-1]
gi|148849719|gb|EDL63898.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
SG-1]
Length = 345
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 82/332 (24%), Positives = 160/332 (48%), Gaps = 17/332 (5%)
Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N +S ++ +++ WA+ KY N W P E+ M D+ + LT+ E+
Sbjct: 21 IINGKSSNILNWDDVRFSWAYPKYKRMLGNFWTPFEINMSKDIKQF---PNLTEQEQDTF 77
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+ +G A +S+ + + +L++ ++ A +E VH+H++ Y+++S+
Sbjct: 78 LKVIGLLALLDSIQTD-YAGKVADYLTDSSLNALMIILAQQEVVHNHSYSYVLSSIVSKN 136
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ E+F+ +R P++ + ++ Q + ++ + E L V+ V+ EG++
Sbjct: 137 KQDEVFDYWRTEPTLRKRNDFITNGYQGFA--------ENPNIENLLHSIVYDVILEGLF 188
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R KMV + YI RDE LH+ + ++ ENP T E +
Sbjct: 189 FYSGFAFFYNLARNQKMVATSTMINYINRDEQLHVGLFEKIYKEVLHENPEYDTAELKVF 248
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
A LEI + + + GL E Y++F+AN+R Q+G + F+ Y NP
Sbjct: 249 GTQAFKRAAELEIEWGEQIIGNKIDGLLMSDLEAYIKFMANKRAEQMGFQAPFEGYRTNP 308
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELK 350
W+ ++ + +FFE + +Y + ++
Sbjct: 309 LRWIVAYQEVDLGKTDFFEQKSRQYTKTSDAN 340
>gi|61806080|ref|YP_214440.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2]
gi|61374589|gb|AAX44586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM2]
gi|265525292|gb|ACY76089.1| NrdB [Prochlorococcus phage P-SSM2]
Length = 384
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 78/357 (21%), Positives = 140/357 (39%), Gaps = 31/357 (8%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
MA G++ + + VN + M + V + KY W P EV
Sbjct: 1 MAEVKGMT-VFN-TEEVNTKKQPMFFGKPLGVQRYDNFKYPSFENLTKQQLGYFWRPEEV 58
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+Q D +++ L +++ + NL + +S+ +A + S PE +
Sbjct: 59 SLQKDRGDYQT---LRPEQKHIYTSNLKYQIMLDSVQGRAPGMAFLPYCSLPELEACMEV 115
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
+F E +HS ++ Y+I ++ D E+F+ I ++A + + + G
Sbjct: 116 WSFMEMIHSRSYTYVIKNVYADPSEVFDKILSDDRILSRAASVTESYDDFINEAQGWGQS 175
Query: 180 DADQEFLQDL-------------------FVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
+ ++ + L + EG+ FY FA + G M G
Sbjct: 176 NLWRDMDKSLDTSLPVLEMKEVKRKLYRAVTNVNILEGIRFYVSFACSFAFGELKVMEGS 235
Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLW---TKEFQQKSRTMLHEATLLEIAYAH 277
A+ I RDE+ HL +++N + + KE +Q + M + E +A
Sbjct: 236 AKIISLIARDENQHLAITQNILNNWRKGDDPEMVEIMKEEEQWTYQMFEKCVNEEKMWAE 295
Query: 278 ETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVIDLKK 331
G +GLN QY++++ANRR IG++P++ NP PW I K
Sbjct: 296 YLFKDGSMIGLNDKLLHQYVEWVANRRMRSIGMKPVYDIAAKNNPLPWTEHWISSKG 352
>gi|126658748|ref|ZP_01729893.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110]
gi|126620010|gb|EAZ90734.1| hypothetical protein CY0110_32340 [Cyanothece sp. CCY0110]
Length = 347
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 83/352 (23%), Positives = 153/352 (43%), Gaps = 24/352 (6%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
SPI + N +++ + + +V L +YGWA Y + + W+P + D
Sbjct: 9 SPIFNPTGKDNKENRHLWGGDTTNVINLNETRYGWARSIYQTMRESFWVPQRTDLSQDKL 68
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L ER +K L + +S+ NI + R+++ PE R L Q +EA+
Sbjct: 69 DY---ANLIPGERRALKGILSYLNFLDSVQVANIPE-LSRYITAPEARMCLAEQTSQEAM 124
Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H T+QYI S+ + + E+++ +++ + + + Y Q L++ + E
Sbjct: 125 HGETYQYITESIIPENEQHEVYDFWKQDLLLHERCEFIAGYYQNLAN--------NPTGE 176
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG+ FY GF +L + ++ G A+ + I DE H++ +I +
Sbjct: 177 NYYMALIGDYLLEGLLFYQGFLFFYNLASSQRLAGCAKLIKQINMDELTHVSLYQKLITE 236
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ + + + + H EI + + +G++ S E Y +++AN R
Sbjct: 237 ATTKFSY-----SEDEITELFHTTVEREIEWTNHIFDGQILGVSKASTEAYTKYLANLRL 291
Query: 305 HQIGLEPLFKYTENP---FPWMSEVIDLKKEKNFFETRVTEYQQGAELK-WD 352
IG+ ++ ENP W K + FFET VT Y Q +K WD
Sbjct: 292 KAIGIPAIYPKIENPYAHLDWADFKGIGKSKAAFFETEVTGYAQPTAVKGWD 343
>gi|158430770|pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
gi|158430771|pdb|2RCC|B Chain B, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
gi|158430772|pdb|2RCC|C Chain C, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
Length = 346
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 79/332 (23%), Positives = 152/332 (45%), Gaps = 17/332 (5%)
Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
+LN +S +V +++ WA+ Y + N W P E+ D + + LT+ E+
Sbjct: 22 ILNGKSSNVLNWDDVRFSWAYPLYKNXLANFWTPFEINXSHDAKQFPT---LTETEQEAF 78
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
K+ +G A +S+ + +L++ +F+E VH+ ++ Y+++SL
Sbjct: 79 KKIIGLLAFLDSVQTD-YSXRAAEYLTDSSLAALXSVLSFQEVVHNQSYSYVLSSLVPKA 137
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ E+F ++ + + + + + + + + V+ V+ EG+
Sbjct: 138 TQDEIFEYWKHDDVLKERNEFIIDGYEKFVD--------NPTPKTFLESIVYDVILEGLN 189
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R K V + YI RDE LH+ ++ ++ +E P L T+E +
Sbjct: 190 FYSGFAFFYNLARNQKXVSTSTXINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTF 249
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319
+T L +A LE + + G+N E Y+ FIAN+R Q+G E + + NP
Sbjct: 250 VKTTLXKAADLEKDWFRYIIGDKIPGINPEDXETYISFIANKRAVQLGXEKPYPEIKHNP 309
Query: 320 FPWMSEVIDLK-KEKNFFETRVTEYQQGAELK 350
W+ D+ + +FFE + +Y + +
Sbjct: 310 XKWIRAYEDVNSGKSDFFEQKSRQYAKVSADN 341
>gi|212638239|ref|YP_002314759.1| ribonucleotide-diphosphate reductase subunit beta [Anoxybacillus
flavithermus WK1]
gi|212559719|gb|ACJ32774.1| Ribonucleotide reductase, beta subunit [Anoxybacillus flavithermus
WK1]
Length = 345
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 75/334 (22%), Positives = 146/334 (43%), Gaps = 20/334 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N ++ + +KY ++ Y N W P E+ M DD+ W L++ ER
Sbjct: 20 IINGKASGILNWNDIKYSHFYDIYKMLLGNFWTPFEINMSDDIKQWH---ALSERERDAF 76
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
+G + +S V N + A+ ++++P + +E VH+ ++ Y++ S+
Sbjct: 77 LHIIGLLSILDS-VQPNFIGAMKEYITDPSVKAIFSIIEQQEVVHNQSYSYVLASIEKLS 135
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ F M R P I + ++ + + + F + L +V EG+
Sbjct: 136 EQHRAFEMARTNPHIYKRNEHVIRVYEAFRE-------QPTVETFCRALVA-SLVLEGIN 187
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQ 259
FY+GFA +L R KM+ + YI +DE H F ++ + ENP + F
Sbjct: 188 FYSGFAFFYNLARNQKMLKTSTMISYINKDELCHSYFISQLVRAVLWENPQIDENGAFSA 247
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
+ EA E ++ + + G++ E+Y++++ N+R +GL+ + EN
Sbjct: 248 WIYDYIDEAIRYETEWSRFVL-RDIDGIDVIEMEKYIEYLGNKRLRMLGLDDRYDADENS 306
Query: 320 FPWMSEVIDLK---KEKNFFETRVTEYQQGAELK 350
PW+ D + +FFE R Y + ++
Sbjct: 307 MPWIRVFSDENVNLGKTDFFEARPRSYTKTTDVN 340
>gi|45686047|ref|YP_003810.1| unknown [Ambystoma tigrinum virus]
gi|37722471|gb|AAP33216.1| unknown [Ambystoma tigrinum stebbensi virus]
Length = 387
Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats.
Identities = 73/324 (22%), Positives = 133/324 (41%), Gaps = 20/324 (6%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA HW+ TE+ ++DD+ WKS +T E+ + L F
Sbjct: 72 CFKPFRYAWAENIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E R L A EA+H + + +LG+ + E + + +
Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+T K ++ + + L + V+ EG+ + F +L+
Sbjct: 190 EEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R+ KM G+ + ++ +RDE++H+ + + E P + T++ + + LE
Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTEDLIELFKEDAERVAELE 296
Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
A+ + GL + Y+ ++ N R +GL L + P PW+ +ID
Sbjct: 297 EAFVDLAFQECGPVCGLEPKQVKDYVLYVINLRASNMGLPRLIERAPEACPIPWVKWLID 356
Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
NFFE VTEY+ G W
Sbjct: 357 GADLTNFFENHVTEYETGGLTGSW 380
>gi|326782458|ref|YP_004322858.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2]
gi|310003406|gb|ADO97803.1| ribonucleotide reductase A subunit [Synechococcus phage S-ShM2]
Length = 386
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 80/357 (22%), Positives = 140/357 (39%), Gaps = 29/357 (8%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ TG++ + E +VN + M + V + KY W P EV
Sbjct: 6 SEVTGMT-VFNKE-KVNTKKQPMFFGQPLGVQRYDTFKYPIFDRLTQQQLGYFWRPEEVS 63
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+Q D A + LT ++R + NL + +S+ +A + S PE +
Sbjct: 64 LQKDRADYAQ---LTPEQRHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMNVW 120
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
F E +HS ++ YII ++ + ++F+ + I ++ + + + T
Sbjct: 121 EFMEMIHSRSYTYIIKNVYSNPEDVFDTILDDEKIIDRSTSVTESYDDFINHAHQYDTGT 180
Query: 181 AD-----------------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ L + EG+ FY FA + G M G A+
Sbjct: 181 MWELAKDGHYTGQYDRRELKRKLYRAVANVNILEGIRFYVSFACSFAFGELKLMEGSAKI 240
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTK---EFQQKSRTMLHEATLLEIAYAHETM 280
I RDES HL +++ + + + E ++ M + E A+A
Sbjct: 241 LSLIARDESQHLVITQNILKNWRDGDDPEMQQIALEEEENVIKMFAKTVDEEKAWAEYLF 300
Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKKEKN 334
G +GLN QY+++IANRR IGL+P++ NP PW ++ K ++N
Sbjct: 301 KDGSMIGLNDRLLSQYVEWIANRRMKAIGLKPMYNVPAKSNPLPWTEHWLNSKGQQN 357
>gi|326782536|ref|YP_004323092.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1]
gi|310002750|gb|ADO97149.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM1]
Length = 386
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 76/344 (22%), Positives = 134/344 (38%), Gaps = 27/344 (7%)
Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+VN + M + V + KY + W P EV +Q D + +++
Sbjct: 17 NKVNTKKQPMFFGQPLGVQRYDSYKYPVFDKLTQQQLGYFWRPEEVSLQKDRSDYQT--- 73
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L+D+++ + NL + +S+ +A + S PE + F E VHS ++ Y
Sbjct: 74 LSDEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMVHSRSYTY 133
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ---------- 183
II ++ D E+F+ + + ++A+ + +
Sbjct: 134 IIKNVYSDPSEVFDTILDDEKVMSRASSVTESYDDFIQQAHQYDGSTMWDLAREGHTAGQ 193
Query: 184 -------EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
L + EG+ FY FA + G M G A+ I RDES HL
Sbjct: 194 YERRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDESQHLV 253
Query: 237 FGIDVINQIKIENPHLWTKEFQQK---SRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
+++ + K + +++ M E +A +G +GLN
Sbjct: 254 ITQNILRKWKEGDDPEMAVIAKEEQPFVAEMFKRTVNEEKMWADYLFKQGSMIGLNDRLL 313
Query: 293 EQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKKEKN 334
Y+++IANRR IGL+P+F NP PW ++ K ++N
Sbjct: 314 HNYVEWIANRRMKAIGLDPIFDVPAKNNPLPWTEHWLNSKGQQN 357
>gi|61806369|ref|YP_214728.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4]
gi|61563913|gb|AAX46968.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM4]
Length = 387
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 75/345 (21%), Positives = 136/345 (39%), Gaps = 27/345 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ V+ + M + V + KY + W P EV +Q D ++
Sbjct: 17 TEEVDTKKQPMFFGKPLGVQRYDSYKYPVFDKLTQQQLGYFWRPEEVSLQKDRGDYQQ-- 74
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
LT +++ + NL + +S+ +A + S PE + F E +HS ++
Sbjct: 75 -LTPEQKHIFTSNLKYQIMLDSVQGRAPGMAFAPYCSLPELEGCINVWQFMEMIHSRSYT 133
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
YII ++ D E+F+ + +I +A + + + + +A +
Sbjct: 134 YIIKNVYSDPSEVFDTIIKDTNILQRAESVTKSYDDFVNDAHEYDSGNAWKFAREGHPAG 193
Query: 187 -----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+ EG+ FY FA + G M G A+ I RDES HL
Sbjct: 194 TLDRRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLISRDESQHL 253
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKS---RTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++ + + + +++ + M E A+A +G +GLNA
Sbjct: 254 VITQQILKKWADGDDPEMQEIAKEEKSFVKDMFRNTVNEEKAWADYLFKEGSMIGLNARL 313
Query: 292 CEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKN 334
Y+++IANRR IGL+P++ NP PW ++ K ++N
Sbjct: 314 LNNYVEWIANRRMKAIGLDPIYDQPLRNNPLPWTEHWLNSKGQQN 358
>gi|23100542|ref|NP_694009.1| ribonucleotide-diphosphate reductase subunit beta [Oceanobacillus
iheyensis HTE831]
gi|22778775|dbj|BAC15043.1| ribonucleoside-diphosphate reductase beta subunit [Oceanobacillus
iheyensis HTE831]
Length = 347
Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 75/330 (22%), Positives = 145/330 (43%), Gaps = 18/330 (5%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
S + + Y ++ Y N+W EV M D+ + + L+ +E+ +
Sbjct: 26 GESSGILNWNDIAYPHWYKMYKRLVGNYWQADEVNMSSDVKQFST---LSKEEQDAYLKI 82
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143
+G ++ ++ +L + ++P + + A +EAVH+ ++ Y+++S+ ++
Sbjct: 83 IGLLSTLDAPQTRTALLISL-YATDPSVQSIMAVIAQQEAVHNESYSYVLSSVVSWNEQN 141
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E F + R + + + + E + V+ + EGM+FY+
Sbjct: 142 EAFQLGRTDELLLKRNEQLTEQYNAFVD--------NPSMENMLKTLVYTSLLEGMFFYS 193
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GFA L R NKMVG + YI RDE H F ++ ENP EF
Sbjct: 194 GFAFFYHLARQNKMVGTSTMISYINRDELEHGRFITELFRATLEENPSHNNAEFIDWIYD 253
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
++ LEI ++H + G++ + Y+++ AN+ +GLE L+ + ENP W
Sbjct: 254 RFQQSVELEIEWSHYVL-NKLEGIDMDDMDGYIKYRANKMLRMMGLEELYPQHVENPMKW 312
Query: 323 MSEVIDL--KKEKNFFETRVTEYQQGAELK 350
+ +D + +FFE + +Y + ++L
Sbjct: 313 VRAYVDNFDGTKTDFFEQKSRQYTKTSDLN 342
>gi|89097912|ref|ZP_01170799.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
NRRL B-14911]
gi|89087414|gb|EAR66528.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
NRRL B-14911]
Length = 353
Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 83/333 (24%), Positives = 159/333 (47%), Gaps = 19/333 (5%)
Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N S++ +++ WA+ KY N W P E+ M D+ + L+++E+
Sbjct: 28 IINGECSNILNWDDVRFQWAFPKYKRMLANFWTPFEINMSQDIKQF---PDLSEEEKEAF 84
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+ +G A +S+ + + +L++ ++ A +E +H+H++ Y+++S+
Sbjct: 85 LKIIGLLALLDSIQTD-YAGKVADYLTDSSLSALMIILAQQEVIHNHSYSYVLSSIVDKN 143
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ E+F +R P++ + + + + + L +F VV EG++
Sbjct: 144 KQDEVFEFWRTEPALIKRNEFVA--------SGYRNFAESPTVDSLLKSIIFDVVLEGLF 195
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA L R KMV + YI RDE LH++ + + +I E P TKE +
Sbjct: 196 FYSGFAFFYHLARNQKMVATSTMINYINRDEQLHVDLFVKIFREILDEYPEQNTKELAEF 255
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENP 319
+ + EA LEI +A + G+ E+Y++F AN R +Q+G F+ + NP
Sbjct: 256 AESTFREAAYLEIEWARSIIGDKISGILIGDVEEYIRFYANVRSNQLGFNRPFEGSRTNP 315
Query: 320 FPWM--SEVIDLKKEKNFFETRVTEYQQGAELK 350
W+ E +DL + +FFE + +Y + +
Sbjct: 316 LRWIKAYEEVDL-GKSDFFEQKPRQYVKVNTVD 347
>gi|311977695|ref|YP_003986815.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba
polyphaga mimivirus]
gi|77416594|sp|Q7T6Y9|RIR2_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|55664859|gb|AAQ09571.2| ribonucleotide reductase small subunit [Acanthamoeba polyphaga
mimivirus]
gi|308204332|gb|ADO18133.1| ribonucleoside-diphosphate reductase small chain [Acanthamoeba
polyphaga mimivirus]
Length = 417
Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 83/332 (25%), Positives = 150/332 (45%), Gaps = 30/332 (9%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ +L+ +S+ + P+KY W+ Y N+W EV + D+ W N L+DD+R
Sbjct: 98 KEPILSLKSEQYTVHPIKYQKVWDNYKDQMKNYWTVEEVDLAKDVNDWN--NHLSDDDRN 155
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+++ +V NI + + E Q E H + ++T+
Sbjct: 156 FIMHVLAFFAAADGIVNANIKENLIDVVKIKEAECAYGFQYAMENAHGEMYSLMLTTFVK 215
Query: 141 DE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D+ +L N + +PSI KA+W ++ ++ D+ + L F +V E
Sbjct: 216 DDALRNKLINSIKTMPSIKKKADWCNKWIKS-------------DKTYAHKLVAFSIV-E 261
Query: 198 GMWFYTGFAQILSLGRA--NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
G++F FA I L + M G+ Q+I RDE+ H+ + + +
Sbjct: 262 GVFFSGSFASIFWLKTREMHVMPGLIISNQFIARDENKHVELACIMYSLLNNRLK----- 316
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+ ++ EA +E + ++++P +G+N+ QY++++A+R +G F
Sbjct: 317 --ESVVYQIIDEAIEIEEEFINDSLPCKLLGMNSELMSQYIKYVADRLLVDLGYRKKFNV 374
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
NPF +M + ID+ + NFFE R Y
Sbjct: 375 D-NPFEYMKK-IDVFVKANFFEKRNDAYSNAN 404
>gi|294501621|ref|YP_003565321.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
megaterium QM B1551]
gi|295706969|ref|YP_003600044.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
megaterium DSM 319]
gi|294351558|gb|ADE71887.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
megaterium QM B1551]
gi|294804628|gb|ADF41694.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
megaterium DSM 319]
Length = 347
Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 84/334 (25%), Positives = 163/334 (48%), Gaps = 19/334 (5%)
Query: 24 MLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N +S ++ +++ WA+ KY N W P E+ M D+ + LT DE+
Sbjct: 21 IINGKSSNILNWDDVRFSWAFPKYKRMLANFWTPFEINMGQDIKQF---PQLTADEQESF 77
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD- 141
+ +G A +S+ ++ + ++++ ++ A +E VH+H++ Y+++SL
Sbjct: 78 LKIIGLLALLDSIQSD-YASKVADYVTDSSINALMIILAQQEVVHNHSYSYVLSSLVPKG 136
Query: 142 -EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ E+F +R + A+ ++ + +++A E V+ V+ EG++
Sbjct: 137 KQDEVFEYWRTDEKLRARNDFITN--------GYKAFSEEATVENFLKSMVYDVILEGLF 188
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R KMV + YI RDE LH+ + ++ ENP T+E +
Sbjct: 189 FYSGFAFFYNLARNQKMVATSTMINYINRDEQLHVGLFEKIFKEVLNENPAYRTEELETF 248
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYT--E 317
EA LEI +A + + F G+ +QY++++AN+RC+Q+G F E
Sbjct: 249 VVETFQEAARLEIEWAESVIGEKFDGITMKELQQYIEYMANKRCNQLGFGRAAFPEAPIE 308
Query: 318 NPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELK 350
NP W+ ++ + +FFE + +Y + ++
Sbjct: 309 NPLRWIIAYQEVDLGKTDFFEQKSRQYTKASDAN 342
>gi|326483608|gb|EGE07618.1| hypothetical protein TEQG_06532 [Trichophyton equinum CBS 127.97]
Length = 317
Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 70/275 (25%), Positives = 117/275 (42%), Gaps = 25/275 (9%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWK 69
++ + ++ L L P+KY W+ Y A + W E+ + D+ W
Sbjct: 65 VKPKTPKELEAEEPRLQENPQRFVLFPIKYREIWQMYKKAEASFWTAEEIDLSKDIHDWN 124
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
N L DDER I L FFA+S+ +V N++ + PE R + Q E +HS
Sbjct: 125 --NRLNDDERFFISHVLAFFAASDGIVNENLLERFSNEVQVPEARCFYGFQIMMENIHSE 182
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
T+ +I + ++ + LF +P I KA+WA+++ Q D + F
Sbjct: 183 TYSLLIDTYIKEQKQRTYLFEAIDTIPCIRKKADWAIRWIQ------------DKNSTFS 230
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
Q L F V EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 231 QRLVAFAAV-EGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLFSHL- 288
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ ++ EA +E + + +P
Sbjct: 289 ------NYRPDPNAVEAIITEAVTIEQEFLTDALP 317
>gi|18656506|gb|AAL77807.1|AF389451_14 ribonucleoside-diphosphate reductase beta subunit [Tiger frog
virus]
Length = 387
Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats.
Identities = 73/324 (22%), Positives = 133/324 (41%), Gaps = 20/324 (6%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F
Sbjct: 72 CFKPFRYTWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 130
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E R L A EA+H + + +LG+ + E + + +
Sbjct: 131 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 189
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+T K ++ + + L + V+ EG+ + F +L+
Sbjct: 190 VEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 236
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R+ KM G+ + ++ +RDE++H+ + + E P + TK+ + + LE
Sbjct: 237 RSGKMKGMGKVVEWSVRDENIHVEGVSKLFETLNSEYPWVVTKDIIELFKEDAERVAELE 296
Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVID 328
A+ + L + Y+ ++ N R +GL L + P PW+ +ID
Sbjct: 297 EAFVDLAFQECGPVCELEPKQVKDYVLYVINLRAANMGLPKLIERAPEACPIPWVKWLID 356
Query: 329 LKKEKNFFETRVTEYQQGA-ELKW 351
NFFE VTEY+ G W
Sbjct: 357 GADLTNFFENHVTEYETGGLTGSW 380
>gi|326784253|ref|YP_004324793.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5]
gi|310003484|gb|ADO97880.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM5]
Length = 388
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 76/345 (22%), Positives = 137/345 (39%), Gaps = 27/345 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ +VN + M + V + KY + W P EV +Q D + +++
Sbjct: 18 KNKVNTKKQPMFFGQPLGVQRYDEYKYPVFDKLTQQQLGYFWRPEEVSLQKDRSDYQT-- 75
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L+ +++ + NL + +S+ +A + S PE + F E +HS ++
Sbjct: 76 -LSPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHSRSYT 134
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ--------- 183
YII ++ D GE+F+ + ++ +A+ + + +
Sbjct: 135 YIIKNVYPDPGEVFDTILDDENVMERASSVTESYDDFINHAHEYDNGQMWNLARDGHTTG 194
Query: 184 --------EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
L + EG+ FY FA + G M G A+ I RDES HL
Sbjct: 195 MYDRHELKRKLYRAVANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDESQHL 254
Query: 236 NFGIDVINQIKIENPHLWTK---EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+++ + K + + E + + M E +A +G +GLN
Sbjct: 255 VITQNILRKWKEGDDPEMKEIAKEEKGWVQHMFERTVNEEKVWADYLFKQGSMIGLNDRL 314
Query: 292 CEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKN 334
Y+++IANRR IGL+P+F NP PW ++ K ++N
Sbjct: 315 LHNYVEWIANRRMKSIGLDPMFDIPAKNNPLPWTEHWLNSKGQQN 359
>gi|317130866|ref|YP_004097148.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522]
gi|315475814|gb|ADU32417.1| ribonucleotide reductase [Bacillus cellulosilyticus DSM 2522]
Length = 345
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 75/338 (22%), Positives = 159/338 (47%), Gaps = 16/338 (4%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
N + + S+V +++ WA+ Y + N W P E+ M +D+ + + L
Sbjct: 15 PNASTRIINGESSNVLNWDDVRFKWAYPLYKNMLANFWTPFEINMGNDVKQY---DKLEP 71
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
ER + +G A +S+ + + + R+L++ + +F+E VH+ ++ Y+++
Sbjct: 72 KEREAFDKIIGLLAFLDSIQTD-YSMHVARYLTDSSLSALMTVLSFQEVVHNQSYSYVLS 130
Query: 137 SLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
SL + E+F ++ + + ++ + + S + E V+ +
Sbjct: 131 SLTTKAKQDEIFEYWKHDKVLRERNDFIAEGYEAFVS--------NPTPETFLHSIVYDI 182
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG+ FY+GF+ +L R KMV + YI RDE H+ ++ ++ E P L +
Sbjct: 183 ILEGLNFYSGFSFFYNLARNQKMVSTSTMINYINRDEQHHVYLFANIFKELMHEYPELNS 242
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
++ + + + LEI +A + G++ E Y++F+AN+R +++G+E F+
Sbjct: 243 EKTHRFVQETFKKGAELEINWAKYIIGDQMEGIDIGDLEAYIKFMANKRVNELGVERPFE 302
Query: 315 -YTENPFPWMSEVIDLK-KEKNFFETRVTEYQQGAELK 350
Y NP W+ D+ + +FFE + +Y + ++
Sbjct: 303 GYRNNPMRWIKIYEDVNSGKTDFFEQKSRQYTKVSDDN 340
>gi|326564074|gb|EGE14316.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
catarrhalis 103P14B1]
gi|326570555|gb|EGE20595.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
catarrhalis BC8]
gi|326573198|gb|EGE23167.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
catarrhalis CO72]
Length = 361
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 71/333 (21%), Positives = 133/333 (39%), Gaps = 12/333 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+ + + L +V++ +Y + + W P E+ + D
Sbjct: 1 MYSVFNPNPNDATQEPMFLGESVNVSRFDKQRYPIFEQLTEKQISFFWRPEEIDVSKDRR 60
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L + E+ + NL + +S+ + + + +S PE ++ AF E++
Sbjct: 61 DF---IELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPELETWIETWAFFESI 117
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
H+ ++ +II ++ + E+ + P I +A +Y L S S +
Sbjct: 118 HARSYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLSLEYQQGKQVDMYE 177
Query: 187 QD-----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
+ V E + FY FA + M G A+ + I RDE+LHLN +
Sbjct: 178 LRKRLYLCIMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKLIARDEALHLNGTQHI 237
Query: 242 INQIKIENPHLW--TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
+ + E+ T+ + + + A E A+ G +GLN QY+Q+
Sbjct: 238 LTLLVKEHEDYQTITQTCKDEIYDIFESAYEQERAWIDYLFKDGSMIGLNKEILTQYLQY 297
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
I + R IGLEP+F T+NP PW++ +
Sbjct: 298 ITDIRMSAIGLEPVFN-TKNPIPWINNWLSSDN 329
>gi|326567429|gb|EGE17544.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
catarrhalis BC1]
Length = 361
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 71/333 (21%), Positives = 133/333 (39%), Gaps = 12/333 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+ + + L +V++ +Y + + W P E+ + D
Sbjct: 1 MYSVFNPNPNDATQEPMFLGESVNVSRFDKQRYPIFEQLTEKQISFFWRPEEIDVSKDRR 60
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L + E+ + NL + +S+ + + + +S PE ++ AF E++
Sbjct: 61 DF---IELPEHEQHIFVSNLKYQTLLDSVQGRSPNVVLLPLVSVPELETWIETWAFFESI 117
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
H+ ++ +II ++ + E+ + P I +A +Y L S S +
Sbjct: 118 HARSYTHIIRNIFNNPSEILDDIVINPEIIKRAESISKYYDELHSLSLEYQQGKQVDMYE 177
Query: 187 QD-----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
+ V E + FY FA + M G A+ + I RDE+LHLN +
Sbjct: 178 LRKRLYLCIMSVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKLIARDEALHLNGTQHI 237
Query: 242 INQIKIENPHLW--TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
+ + E+ T+ + + + A E A+ G +GLN QY+Q+
Sbjct: 238 LTLLVKEHEDYQTITQTCKDEIYDIFESAYEQERAWIDYLFKDGSMIGLNKEILTQYLQY 297
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
I + R IGLEP+F T+NP PW++ +
Sbjct: 298 ITDIRMSAIGLEPVFN-TKNPIPWINNWLSSDN 329
>gi|113200701|ref|YP_717864.1| ribonucleotide reductase subunit B [Synechococcus phage syn9]
gi|76574600|gb|ABA47165.1| ribonucleotide reductase subunit B [Synechococcus phage syn9]
Length = 387
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 73/357 (20%), Positives = 137/357 (38%), Gaps = 29/357 (8%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
G++ + E +V+ + M + V + KY W P EV
Sbjct: 7 KEVEGMT-VFNKE-KVDTKKQPMFFGQPLGVQRYDSYKYPVFDRLTQQQLGYFWRPEEVS 64
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+Q D + + LT++++ + NL + +S+ +A + S PE +
Sbjct: 65 LQKDRSDYAQ---LTENQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVW 121
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
F E +HS ++ +II ++ + ++F+ E + +A+ + + G
Sbjct: 122 EFMEMIHSRSYTHIIKNVYPNPSDVFDTILEDERVLERASSVTESYDDFIQHAQEYGNGT 181
Query: 181 AD-----------------QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ L + EG+ FY FA + G M G A+
Sbjct: 182 MWELAKEGHVAGQYDRRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKI 241
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT---MLHEATLLEIAYAHETM 280
I RDE+ HL +++N+ + + +++ M E +A
Sbjct: 242 LSLIARDENQHLVITQNILNKWREGDDPEMAIIAKEEEVNVVDMFKRTVNEEKRWADYLF 301
Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKN 334
G +GLN Y+++IANRR IGL+P++ NP PW ++ K ++N
Sbjct: 302 KDGSMIGLNDRLLHNYVEWIANRRMKAIGLKPIYDIPAKNNPLPWTEHWLNSKGQQN 358
>gi|326782933|ref|YP_004323331.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4]
gi|310004192|gb|ADO98586.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-RSM4]
Length = 388
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 77/357 (21%), Positives = 142/357 (39%), Gaps = 29/357 (8%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
A G++ + + +VN + M + V + KY S W P EV
Sbjct: 8 AEVKGMT-VFN-KNKVNTKKQPMFFGQPLGVQRYDEYKYPVFDRLTQSQLGYFWRPEEVS 65
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+Q D + +++ LT +++ + NL + +S+ +A + S PE +
Sbjct: 66 LQKDRSDYQT---LTPEQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVW 122
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----- 175
F E +HS ++ YII ++ D E+F+ + ++ ++A+ + + +
Sbjct: 123 EFMEMIHSRSYTYIIKNVYPDPSEVFDTILDDENVMSRASSVTKSYDEFINSAHEFDNCQ 182
Query: 176 ------------TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
T + + L + EG+ FY FA + G M G A+
Sbjct: 183 TWDLARQGHLTGTYERKELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKI 242
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS---RTMLHEATLLEIAYAHETM 280
I RDES HL +++ + + +++ M E +A+
Sbjct: 243 LSLIARDESQHLVITQNILKNWAKGDDSEMAEIAKEEKPFVVDMFKRTVEEEKTWANYLF 302
Query: 281 -PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVIDLKKEKN 334
+GLN Y+++IANRR IGL+P+F NP PW ++ K ++N
Sbjct: 303 REGSMIGLNDRLLHNYVEWIANRRMKAIGLDPVFDQVARNNPLPWTQHWLNSKGQQN 359
>gi|331035505|gb|AEC53062.1| ribonucleotide reductase subunit B [Synechococcus phage S-CRM01]
Length = 381
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 74/342 (21%), Positives = 135/342 (39%), Gaps = 27/342 (7%)
Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
V++ + M + + Q L KY + + W P EV +Q D + ++ L
Sbjct: 14 VDLKQQPMFFGQPLGIQQYLDYKYPLFEKLTQTQLGFFWRPEEVSLQKDRSDYQ---NLR 70
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+++ + NL + +S+ LA + S PE + F E +HS ++ +II
Sbjct: 71 PEQKHIFTSNLKYQVMLDSVQGRGPSLAFLPYCSLPELESCMEVWGFMEMIHSRSYTHII 130
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ-------- 187
+L E+F+ I +A + + + + + + +
Sbjct: 131 KNLYPQPEEVFSTILSDSKIMERAKSVTESYDSFINAAHHYDNGNGWKFAKEGVPASQAE 190
Query: 188 ---------DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
+ + EG+ FY FA + G M G A+ I RDE+ HL
Sbjct: 191 RYELKRKLFRAVMTVNILEGIRFYVSFACSFAFGELKVMEGSAKIISLIARDENQHLFLT 250
Query: 239 IDVINQIKIENPHLWTKEFQQKSRT---MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
++IN + + K + ++ + A E A+A G +GL+
Sbjct: 251 QNIINNWRNNDDPEMKKIYNEEIDHTTSLFEAAVDQEKAWAQYLFKTGSMIGLSEKLLCN 310
Query: 295 YMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKN 334
Y+++IANRR IG++P++ NP PWM + K +N
Sbjct: 311 YVEWIANRRMKAIGIKPIYEIPANSNPLPWMDHWLKSKGVQN 352
>gi|326781924|ref|YP_004322326.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2]
gi|310003114|gb|ADO97512.1| ribonucleotide reductase A subunit [Synechococcus phage S-SM2]
Length = 397
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 80/354 (22%), Positives = 137/354 (38%), Gaps = 29/354 (8%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
G++ + E+ VN + M + V + KY + W P EV
Sbjct: 17 KEVEGMT-VFNTEQ-VNTKKQPMFFGKPLGVQRYDSYKYPVFDKLTTQQLGYFWRPEEVS 74
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+Q D +++ L +++ + NL + +S+ +A + S PE +
Sbjct: 75 LQKDRGDYQT---LRPEQKHIYTSNLKYQIMLDSIQGRGPGMAFIPYCSLPELEACMEVW 131
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
F E +HS ++ YII ++ D E+F+ I +A+ + GT +
Sbjct: 132 GFMEMIHSRSYTYIIKNVYSDPSEVFDKIVTDDRILERASSVTASYDDFIRSAQQWGTGN 191
Query: 181 ADQEFLQ-----------------DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
QE + + EG+ FY FA + G M G A+
Sbjct: 192 MWQEDFRQSPSSQWEIKDVKRKLYRAVANVNILEGIRFYVSFACSFAFGELKLMEGSAKI 251
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLW---TKEFQQKSRTMLHEATLLEIAYAHETM 280
I RDE+ HL +++N+ + KE ++ + A E +A
Sbjct: 252 ISLIARDENQHLAITQNILNKWAQGDDPEMKQIMKEEEEWTYKAFDNAVNEEKRWADYLF 311
Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKK 331
G +GLN +QY++++ANRR IGL+P + + NP PW I K
Sbjct: 312 KDGSMIGLNDKLLQQYVEWVANRRLKAIGLKPQYDIAASANPLPWTQHWISSKG 365
>gi|34482564|emb|CAE09564.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN [Wolinella
succinogenes]
Length = 283
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 81/293 (27%), Positives = 150/293 (51%), Gaps = 13/293 (4%)
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D + GLT E+L R L +SL NN++ + ++++PE L+RQ
Sbjct: 1 MTPDKRDYN--GGLTPAEKLGYDRALSQLIFMDSLQTNNLIDNVNPYITSPEINLILVRQ 58
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+HS ++ ++ S+ + E++ M+R + +K + + L+ K+
Sbjct: 59 AFEEALHSQSYAVMVESISANTDEIYEMWRVDMQLKSKNDHIAGVYEELA--------KN 110
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ + EG++FY GF+ +L R+ KM+G A+ ++I RDE HL +
Sbjct: 111 PTDSAMLKAMFANQILEGIYFYAGFSFFYTLARSGKMLGSAQMIRFIQRDEVTHLLIFQN 170
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+IN +K E P L+TK +++ M +A +E A+ +GL + +Y+Q++A
Sbjct: 171 MINALKKERPDLFTKSLEEEVVEMFRKAVAVESAWGDYITQGQILGLTSEIIHEYIQYLA 230
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKWD 352
+ R ++G+ L+ ++P W+ + + + NFFE VT Y +G+ + +D
Sbjct: 231 DDRLKRVGMPILYN-AKHPIKWVDQFSSFNEQKTNFFEGNVTNYAKGS-INFD 281
>gi|172058301|ref|YP_001814761.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium
sibiricum 255-15]
gi|171990822|gb|ACB61744.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sibiricum
255-15]
Length = 347
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 76/330 (23%), Positives = 145/330 (43%), Gaps = 21/330 (6%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++ + + + Y + Y +N W+P E+ M D+ W L++ E+
Sbjct: 21 IIGGETSSIVNWNDIAYPQFYSIYKQLLSNFWIPDEISMSKDMQQWNQ---LSEREQDAF 77
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
KR +G + +S+ +L S+ L A +E VH+ ++ Y+++SL
Sbjct: 78 KRIIGLLSILDSVQTR-YILESAMFTSDASIHAILAIVAQQEVVHNQSYSYVLSSLVPLS 136
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F++ ++ + + + L + + D E V +V EG+
Sbjct: 137 EQNRIFDIAKDDDMVMKRNAFILDLYEDFQN--------DRTPENFAKSLVASIVLEGIN 188
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW-TKEFQQ 259
FY+GFA +L R KMVG + YI RDE H F ++ + E+P + F +
Sbjct: 189 FYSGFAFFYNLARHQKMVGTSTMISYIQRDELQHSYFISQLLRAVLTEHPDIDADGSFTK 248
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTEN 318
A LEI ++ + + GL+ Y++++AN+R IGL+ L++ + E+
Sbjct: 249 FVYATFERAVDLEIEWSEYVL-RDLDGLDVSEMRDYVKYLANKRLRVIGLDDLYEGHDED 307
Query: 319 PFPWMSEVID---LKKEKNFFETRVTEYQQ 345
PW+ D + +FFE + Y +
Sbjct: 308 VMPWIRAYSDDSMNATKSDFFEQKSRSYAK 337
>gi|254796877|ref|YP_003081714.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia
risticii str. Illinois]
gi|254590113|gb|ACT69475.1| ribonucleoside-diphosphate reductase, beta subunit [Neorickettsia
risticii str. Illinois]
Length = 286
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 70/294 (23%), Positives = 127/294 (43%), Gaps = 18/294 (6%)
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M DD+ W K T E+ ++ + FF ++ V + + PE L
Sbjct: 1 MADDVQDWHHKICST--EKNLLTQIFRFFTQADVEVHDCYMRHYAGVFKPPEVCMMLTAF 58
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
A E +H + +++ ++G+ E E + + + + K + D
Sbjct: 59 ANMETIHIAAYAHLLDTVGMPETE-YLAFTKYRQMKEKCEY------------LKAFKMD 105
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ E + L V+ EG+ + FA +L+ R NKM G+ + Y +RDE+LH N
Sbjct: 106 SPTEIAKTLAVYGAFTEGLQLFASFAILLNFPRFNKMKGMGQIIAYSVRDETLHSNSITK 165
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
+ +EN + + + + R + E A+ G GL A ++Y+++I
Sbjct: 166 LFRTFLLEND-IDKLKLEAEIREICDAMVHHEDAFIDLAFEMGDVEGLKASEVKEYIRYI 224
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ-GAELKWD 352
AN R Q+G +++ NP W+ V++ + NFFE + TEY + + WD
Sbjct: 225 ANLRLKQLGFSEIYEQKVNPLLWLEAVLNTVEHTNFFENKATEYSKAATKGTWD 278
>gi|269864629|ref|XP_002651641.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220064151|gb|EED42415.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 277
Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats.
Identities = 81/289 (28%), Positives = 132/289 (45%), Gaps = 31/289 (10%)
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D + + LT +E+ IK L FFA+S+ +V N+V + E + + Q
Sbjct: 1 MTFDCEHFST---LTPNEQFFIKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQ 57
Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
E +HS + +I +L D+ E LFN +PSI KA WA ++ + +S
Sbjct: 58 IAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD---- 113
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
V + EG++F FA I L + M G+ + I RDE LH +F
Sbjct: 114 ----------TRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDF 163
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ I + ++ EA +E + E++P +G+N QY++
Sbjct: 164 ACLLHKYINNK---------CTVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIE 214
Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
F+A+R +G + ++ + NPF +M E I L+ + NFFE R YQ+G
Sbjct: 215 FVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 261
>gi|67906414|gb|AAY82584.1| ribonucleotide reductase subunit 2 [Carassius carassius]
Length = 246
Score = 176 bits (445), Expect = 6e-42, Method: Composition-based stats.
Identities = 65/269 (24%), Positives = 111/269 (41%), Gaps = 26/269 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L + P++Y W+ Y A + W EV + DL W + L D+ER
Sbjct: 1 EPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHW---DSLKDEERYF 57
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+S+ +V N+V + + E R + Q E +HS + +I + D
Sbjct: 58 ISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKD 117
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E LFN +P + KA+WAL + + V + EG
Sbjct: 118 PKERDFLFNAIETMPCVKKKADWALNWIG-------------DKNAQYGERVVAFAAVEG 164
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + + K +
Sbjct: 165 IFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVN-------KPSE 217
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGL 287
+ + ++ A +E + + +P +G+
Sbjct: 218 ETVKKIIVNAVAIEQEFLTDALPVKLIGM 246
>gi|225849393|ref|YP_002729557.1| ribonucleoside-diphosphate reductase subunit beta
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225644764|gb|ACN99814.1| ribonucleoside-diphosphate reductase, beta subunit
[Sulfurihydrogenibium azorense Az-Fu1]
Length = 326
Score = 176 bits (445), Expect = 6e-42, Method: Composition-based stats.
Identities = 92/332 (27%), Positives = 156/332 (46%), Gaps = 14/332 (4%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+ +V D L KY E Y W P E+ +Q D+ +KS L
Sbjct: 5 GKTSVRDNIRLTENP--------KYPVFRELYTKQKKAVWFPEELNIQQDVLDYKS---L 53
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
T E+ + +G+FASSE LV N + + L++P + Q F E +HS F+ I
Sbjct: 54 TPTEKDLFDSAVGYFASSELLVQNVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEII 113
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ S +D +++N+ E + K ++ ++ T + ++ L + + +
Sbjct: 114 LNSFDMDRKKIYNITLEDKLLKEKQELIVRAVDRITYGKADPDTLEGKKQILTSILLNNI 173
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY+ FA ++ KM + + I+ DESLHL GI+ I + ENP +
Sbjct: 174 IQEGLFFYSAFAHFFAMKDTGKMKNVVAGVELILIDESLHLQNGIEAILTMVEENPEIVD 233
Query: 255 K-EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
F + R + +A LE+ Y G++ E+YM++IA+RR ++G +P
Sbjct: 234 DYNFVENIRQSIIDAVELELNYLKTKFGGTTIFGVSYNELERYMKYIADRRLVELGFDPQ 293
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
F +NP ++ + D+KK NFFE TEY
Sbjct: 294 FGIDQNPLKFLQKE-DVKKLTNFFEVSSTEYT 324
>gi|229542075|ref|ZP_04431135.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1]
gi|229326495|gb|EEN92170.1| Ribonucleoside-diphosphate reductase [Bacillus coagulans 36D1]
Length = 347
Score = 176 bits (445), Expect = 6e-42, Method: Composition-based stats.
Identities = 81/330 (24%), Positives = 147/330 (44%), Gaps = 18/330 (5%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
S + L Y ++ Y N+W EV M D+ + L++ E+ +
Sbjct: 26 GKSSGILNWNDLAYPHWYKTYKRLLGNYWQSDEVNMSTDVKQF---PLLSEKEQETFLKI 82
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEG 143
+ A+ +S I+LA + ++P + L A +EAVH+ ++ YI++S+ +
Sbjct: 83 ISLLATLDSSQTRTILLASL-YATDPSIQSILAVIAQQEAVHNESYSYILSSVVSLDKQN 141
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E F + R+ P + + ++ + D E + V+ + EG++FY+
Sbjct: 142 EAFEIGRKDPVLLKRNKKLMEQYNAFAQQ--------PDVEDIVKTLVYSTLLEGLFFYS 193
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GFA +L R NKMVG + YI RDE H F ++I + E+P L T F
Sbjct: 194 GFAFFYNLARQNKMVGTSTMISYINRDELEHGRFISELIRAVLSEHPELNTPAFSDWVYA 253
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPW 322
E+ LE ++ + + G++ ++++ AN+ IGL L+ + ENP W
Sbjct: 254 RFRESVDLETEWSEYVL-QDVEGIDLEEMAGFIKYRANKMLRMIGLSELYPEHVENPMKW 312
Query: 323 MSEVIDL--KKEKNFFETRVTEYQQGAELK 350
+ D + +FFE + Y + ++L
Sbjct: 313 IRAYADNFDATKTDFFEQKSRSYTKVSDLN 342
>gi|125554800|gb|EAZ00406.1| hypothetical protein OsI_22421 [Oryza sativa Indica Group]
Length = 244
Score = 176 bits (445), Expect = 6e-42, Method: Composition-based stats.
Identities = 63/249 (25%), Positives = 115/249 (46%), Gaps = 26/249 (10%)
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
+ E R + Q E +HS + ++ + D E LF VP++ KA+W
Sbjct: 1 MSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDGAEKDRLFRAIDTVPAVRRKADW 60
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
A+++ D + F + L + EG++F F I L + M G+
Sbjct: 61 AMRWI-------------DGGERFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPGLT 106
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ I RDE LH +F + + ++ + + + R ++ +A +E + + +P
Sbjct: 107 FSNELISRDEGLHCDFACLLYDLLRGKLD-------EARVREIVADAVDIEREFVCDALP 159
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVT 341
VG+N QY++F+A+R +G + ++ NPF WM E+I L+ + NFFE RV
Sbjct: 160 VALVGMNGDLMSQYIEFVADRLLMALGCKKMYNVA-NPFDWM-ELISLQGKTNFFEKRVG 217
Query: 342 EYQQGAELK 350
+YQ+ + +
Sbjct: 218 DYQKASVMS 226
>gi|167461830|ref|ZP_02326919.1| ribonucleoside-diphosphate reductase beta subunit [Paenibacillus
larvae subsp. larvae BRL-230010]
gi|322383591|ref|ZP_08057349.1| ribonucleotide-diphosphate reductase subunit beta-like protein
[Paenibacillus larvae subsp. larvae B-3650]
gi|321152059|gb|EFX44995.1| ribonucleotide-diphosphate reductase subunit beta-like protein
[Paenibacillus larvae subsp. larvae B-3650]
Length = 343
Score = 175 bits (444), Expect = 8e-42, Method: Composition-based stats.
Identities = 79/339 (23%), Positives = 154/339 (45%), Gaps = 18/339 (5%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
N DK + + S + ++ ++ Y NHW+P+E+PM D ++ LT
Sbjct: 13 PNKSDKLIEGSCSSILNWDDIRKPEMYKLYKVLIANHWIPSEIPMNKDKLQFEQ---LTA 69
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ K+ +G A +S+ N V + + ++ +E +H+ ++ Y+++
Sbjct: 70 QEQETYKKIIGLLAVLDSMQTN-FVTDVGNYFTDSSLVAIAAIINQQEVIHNQSYSYVLS 128
Query: 137 SLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
S+ E E+F +++ + + + + Q + + V +
Sbjct: 129 SITNYEVQKEVFEYWKKDEILLERNLFIAELYQRFRD--------EPTPATFFEAVVADM 180
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY+GFA L R KM+G ++ YI RDE+ H F +V + + P L T
Sbjct: 181 ILEGIFFYSGFAFFYHLARQQKMLGTSQMISYIQRDEAQHAYFFGEVFKLLLTDFPELNT 240
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
E Q + +A LE +AH + G++ +Y++FIAN+R +GL+P ++
Sbjct: 241 SERIQYVYDTIDQAVKLEEKWAHYVL-NQIDGIDLDDFSRYIRFIANKRLKTMGLQPAYE 299
Query: 315 YTENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAELK 350
+N PW S+ + + +FFE + Y + ++
Sbjct: 300 GVDNCMPWIRPFSDEALNQTKTDFFEAKSRTYAKVSDDN 338
>gi|188996383|ref|YP_001930634.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188931450|gb|ACD66080.1| Ribonucleoside-diphosphate reductase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 326
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 90/332 (27%), Positives = 157/332 (47%), Gaps = 14/332 (4%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+ +V D L+ +Y E Y W P E+ +Q D+ +KS L
Sbjct: 5 GKTSVRDNIRLSENP--------RYPIFKELYTKQKKAVWFPEELNIQQDVLDYKS---L 53
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
+ E+ + +G+FASSE LV N + + L++P + Q F E +HS F+ I
Sbjct: 54 SPTEKDLFDSAVGYFASSELLVQNVVGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEII 113
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+ S +D ++N+ E + K ++ ++ T + ++ L + + +
Sbjct: 114 LNSFDMDRKRIYNITLEDKLLKEKQELIVRAVDRITYGKADPDTIEGKKQILTSILLNNI 173
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ EG++FY+ FA ++ KM + + I+ DESLHL GI+ I + ENP +
Sbjct: 174 IQEGLFFYSAFAHFFAMKDTGKMKNVVSGVELILIDESLHLQNGIEAILTMVEENPEIVD 233
Query: 255 K-EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+F + R + +A LE+ Y G++ E+YM++IA+RR ++G +P
Sbjct: 234 DYQFVENIRQSIIDAVELELNYLKTKFGGTTIFGVSYGELERYMKYIADRRLIELGFDPQ 293
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
F +NP ++ + D+KK NFFE TEY
Sbjct: 294 FGIDQNPLKFLQKE-DVKKLTNFFEVSSTEYT 324
>gi|319655055|ref|ZP_08009124.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
2_A_57_CT2]
gi|317393250|gb|EFV74019.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus sp.
2_A_57_CT2]
Length = 345
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 86/328 (26%), Positives = 156/328 (47%), Gaps = 19/328 (5%)
Query: 24 MLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N S++ +++ WA+ KY N W P E+ M D+ + L E+
Sbjct: 21 IINGECSNILNWDDVRFSWAYPKYKKMLANFWTPFEINMSQDIKQF---PELRKSEQEAF 77
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
+ +G A +S+ + + ++++ ++ A +E +H+H++ Y+++SL +
Sbjct: 78 LKIIGLLALLDSIQTD-YAGKVADYITDSSISALMIILAQQEVIHNHSYSYVLSSLVPKQ 136
Query: 143 --GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
E+F +R P + + + + + ++ E L VF VV EG++
Sbjct: 137 KQDEVFEFWRTEPILAERNEFVVN--------GYKDFAENPSAENLLKSIVFDVVLEGLF 188
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA L R KMV + YI RDE +H++ + + +I ENP L T E +
Sbjct: 189 FYSGFAFFYHLARNQKMVATSTMINYINRDEQIHVDLFVKIFKEILQENPELNTNELSKF 248
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
+ A LEI +A + + G+ E Y++F AN RC+Q+G E F+ Y NP
Sbjct: 249 VQETFKRAAELEIEWARDVIGSKTEGILLSDVEAYIKFYANIRCNQLGYERPFEGYRTNP 308
Query: 320 FPWM--SEVIDLKKEKNFFETRVTEYQQ 345
W+ E +D + +FFE + +Y +
Sbjct: 309 LRWIVAYEQVD-HGKSDFFEQKSRQYTK 335
>gi|326783480|ref|YP_004324017.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19]
gi|310004983|gb|ADO99373.1| ribonucleotide reductase A subunit [Synechococcus phage Syn19]
Length = 388
Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats.
Identities = 71/349 (20%), Positives = 138/349 (39%), Gaps = 28/349 (8%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ +V+ ++ M + V + KY + W P EV +Q D + +
Sbjct: 15 VFNKT-KVDTKNQPMFFGQPLGVQRYDEYKYPVFDKLTQQQLGYFWRPEEVSLQKDRSDY 73
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
++ L++ ++ + NL + +S+ +A + S PE + F E +HS
Sbjct: 74 QT---LSEQQKHIFTSNLKYQIMLDSVQGRGPGMAFIPYCSLPELEACMTVWEFMEMIHS 130
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ----- 183
++ YII ++ + G++F+ + ++ ++A+ + + +
Sbjct: 131 RSYTYIIKNVYSNPGDVFDTILDDENVMSRASSVTESYDSFIEHAHQYDGSTMWDLAREG 190
Query: 184 ------------EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
L + EG+ FY FA + G M G A+ I RDE
Sbjct: 191 HQGGQWERRELKRKLYRAIANVNILEGIRFYVSFACSFAFGENKLMEGSAKILSLIARDE 250
Query: 232 SLHLNFGIDVINQIKIENPHLWT---KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGL 287
S HL +++ + + +E Q M E A+A+ G +GL
Sbjct: 251 SQHLVITQNILRKWSEGDDPEMKLIAQEEQSYVTEMFKRTVEEEKAWANYLFRDGSLIGL 310
Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKN 334
N Y+++IANRR +G++P++ NP PW ++ K ++N
Sbjct: 311 NDRLLYNYVEWIANRRMKAVGIKPIYDIPAKNNPLPWTEHWLNSKGQQN 359
>gi|326783148|ref|YP_004323545.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2]
gi|310005566|gb|ADO99954.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM2]
Length = 394
Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 80/342 (23%), Positives = 133/342 (38%), Gaps = 27/342 (7%)
Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
V+ + M + + + KY + W P EV +Q D + +K+ LT
Sbjct: 27 VDTKKQPMFFGQPLGMQRYDEFKYPVFDKLTTQQLGYFWRPEEVSLQKDRSDYKT---LT 83
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+++ + NL + +S+ +A + S PE + E +HS ++ YII
Sbjct: 84 PEQKHIYTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNVWQLMEMIHSRSYTYII 143
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-----------------TGT 178
++ D E+F+ + P I ++A + L + T
Sbjct: 144 KNVYPDASEVFDTVLDDPKIMSRAESVTKAYDDLINSEHEFDSGNAWKFAAEGHPAGTYD 203
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH---L 235
+ + L + + EG+ FY FA + G M G A+ I RDES H
Sbjct: 204 RKELKRKLYRAVLNVNILEGIRFYVSFACSFAFGELKVMEGSAKIISLIARDESQHLVLT 263
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
I E +E + M A E A+A G +GLN Q
Sbjct: 264 QQIIKKWQDGDDEEMVRIAEEEKPNVLKMFQNAVEEEKAWAQYLFKNGSMIGLNEKLLGQ 323
Query: 295 YMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVIDLKKEKN 334
Y++F ANRR IGL+P++ + NP PW ++ K ++N
Sbjct: 324 YVEFTANRRMKAIGLDPIYDISPRNNPLPWTQYWLNSKGQQN 365
>gi|229916488|ref|YP_002885134.1| ribonucleotide-diphosphate reductase subunit beta [Exiguobacterium
sp. AT1b]
gi|229467917|gb|ACQ69689.1| Ribonucleoside-diphosphate reductase [Exiguobacterium sp. AT1b]
Length = 346
Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 80/330 (24%), Positives = 145/330 (43%), Gaps = 21/330 (6%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++ + + + Y + Y +N W+P E+ M D+ W LT+ E+
Sbjct: 20 IIGGETSSIVNWNDIAYPQFYTIYKQLLSNFWIPDEISMSKDMQQW---PQLTEREQDAF 76
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
KR +G + +S+ +L S+ L A +E VH+ ++ Y+++SL
Sbjct: 77 KRIIGLLSILDSVQTR-YILESSMFSSDSSVHAVLAVIAQQEVVHNQSYSYVLSSLVPLA 135
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +FN+ ++ + + + L + + + E V V+ EG+
Sbjct: 136 EQNRIFNIAKDDEMVMKRNQFILDLYEAF--------RETPNAENFAKSLVASVILEGIN 187
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQ 259
FY+GFA +L R KMVG + YI RDE H F ++ + ENP + +F Q
Sbjct: 188 FYSGFAYFYNLARHQKMVGTSTMISYIQRDEMQHSYFISQLLRAVLTENPKIDENGQFSQ 247
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TEN 318
+ EA LEI + + + GL+ Y++++AN+R IGL L++ E+
Sbjct: 248 FVYDTMAEAVDLEIEWCEYVL-RDLDGLDVSEMRDYVKYLANKRLRVIGLNDLYEGFDED 306
Query: 319 PFPWMSEVID---LKKEKNFFETRVTEYQQ 345
PW+ D + +FFE + Y +
Sbjct: 307 VMPWIRAYSDDSLNATKSDFFEQKSRSYAK 336
>gi|319785673|ref|YP_004145148.1| ribonucleotide reductase [Pseudoxanthomonas suwonensis 11-1]
gi|317464185|gb|ADV25917.1| ribonucleotide reductase [Pseudoxanthomonas suwonensis 11-1]
Length = 354
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 81/354 (22%), Positives = 148/354 (41%), Gaps = 19/354 (5%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
T L I+ E R ++N + + + Y + Y N W+P EV M
Sbjct: 9 TATRLDRIRILEPRHPNRSTGIINGTTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDM 68
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
+ D + L+ E+ +G A+ +S I + ++++P
Sbjct: 69 KSDARQY---GELSAREKNAFDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIG 124
Query: 122 FEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
+E +H+ ++ Y++ S+ ++ +F + R P+I + ++ +
Sbjct: 125 QQEVIHNESYSYVLASITDLANQNRVFEIARTHPTILRR--------NAPIMAAYDDFMR 176
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ E L + + EG+ FY+GFA +L R N+M G + +I RDE H F
Sbjct: 177 EKTAETLLRALIQSSILEGINFYSGFAYFYNLVRQNRMAGTGKIISFINRDELAHTKFIS 236
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+VI I ENP L T E A LE + E + G G++ +Y+++
Sbjct: 237 EVIRAIVGENPELQTDELADYVHLAFRHAIELETQWTGEVL-DGIDGIDVDEMIRYVKYR 295
Query: 300 ANRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
AN+ +G+E L+ + T+N PW+ D + + +FFE R Y++
Sbjct: 296 ANKMAGMLGIESLYTETTDNVMPWIRAYADNFTETKTDFFEMRNASYKKTNADN 349
>gi|51869996|ref|YP_073549.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate
China]
gi|51858204|gb|AAU10888.1| Ribonucleotide reductase [Lymphocystis disease virus - isolate
China]
Length = 374
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 85/333 (25%), Positives = 128/333 (38%), Gaps = 21/333 (6%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+R+ + P Y WA E N HW E+ + DD+ WK L D E+
Sbjct: 61 KRRLFEYNAS---YKPFHYPWAVELRSLHENMHWTEKEISLADDVTDWK-IGKLLDVEKK 116
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I + L F + V N E R L A E H + + +LGL
Sbjct: 117 FITQILRLFTQLDVSVGQLYHNTFIPIFKNNEIRNMLCSFACREGTHQQAYALLNDTLGL 176
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
E + L+Y Q F + + + V V EG+
Sbjct: 177 PESDYSA--------------FLKYKQMTDKTDFMSDMRTDTIGNVAFSLVKAVYNEGVS 222
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
+ F +L+ R M G+ + ++ +RDE++H+ + I E P + TK+F +
Sbjct: 223 LFAAFVMLLNFQRFGVMKGMGKVVEWSIRDENVHVEGLCKLFKTIVSEYPFILTKDFYKA 282
Query: 261 SRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
T+ E LE A+ L Y+++I RR Q+GL +NP
Sbjct: 283 VETLQQEVLKLETAFVDLVFIEDKLKNLKRVDVINYVKYILQRRTVQLGLSNKTDL-QNP 341
Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKW 351
W+S +I + NFFE RVTEY G E W
Sbjct: 342 ILWVSWLISGRDVTNFFENRVTEYDVGGLEGDW 374
>gi|195953600|ref|YP_002121890.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1]
gi|195933212|gb|ACG57912.1| Ribonucleoside-diphosphate reductase [Hydrogenobaculum sp. Y04AAS1]
Length = 319
Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats.
Identities = 92/305 (30%), Positives = 163/305 (53%), Gaps = 15/305 (4%)
Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
Y Y A NN+W+P E + +D + L D ER + +GFF+S+E V
Sbjct: 30 YPEILNLYTKAKNNYWIPEEYDLANDKHEF--YEKLNDIERHYMLHTVGFFSSAEGWVGQ 87
Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
N +L I + + N E R +L Q EE H TF+YI+ L L E++ M+ V I K
Sbjct: 88 N-ILEISKRIRNTETRMFLGYQLMEEMKHIDTFRYIMDGLDLKPHEVYAMHENVKEIKRK 146
Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
A++ ++ L + ++ ++D+FV+Y + EG++F++GF L+ GR +
Sbjct: 147 ADFEVKRAMALCE-------EPTEENLIEDIFVYYAILEGLFFFSGFVTPLAFGRRGVLK 199
Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
+A ++I++DE+ HL FGI ++N++ + +++ K R ++ EA +E YA
Sbjct: 200 NVAALVRWILKDETRHLAFGIYLLNELLKD---KNKNDYKDKFRVLMEEAVDIETEYARV 256
Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFET 338
MP+ +GL+ + Y++++A+RR +G + ++ +NP W++ DL NFFE
Sbjct: 257 AMPEKIIGLSFETYTSYVKYLADRRMRSLGFDAIYGQ-KNPMKWLTTQTDLPDLTNFFEA 315
Query: 339 RVTEY 343
+V +Y
Sbjct: 316 KV-DY 319
>gi|67921622|ref|ZP_00515140.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH
8501]
gi|67856734|gb|EAM51975.1| Ribonucleoside-diphosphate reductase [Crocosphaera watsonii WH
8501]
Length = 321
Score = 173 bits (437), Expect = 5e-41, Method: Composition-based stats.
Identities = 81/328 (24%), Positives = 142/328 (43%), Gaps = 27/328 (8%)
Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
++Y WA Y N W+P + + D+ + LTDDER L + +S
Sbjct: 9 NDVRYTWAVGLYQQMRENFWIPQRLDITQDVTDY---GNLTDDERYAYDGILSYLTFLDS 65
Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREV 152
+ NI + ++ PE + Q +E +H+ ++QY+I ++ E +++ +R
Sbjct: 66 VQTCNIP-HLKTSITAPEISLCMAEQISQEGMHNQSYQYLIETIIPPERRTQVYEFWRTD 124
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ + + + Q DA E + + EG++FY GF +L
Sbjct: 125 KLLRDRCEFIAKLYQKYID--------DATTENYFIALMADFLLEGLYFYNGFIYFYNLA 176
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
M G A+ ++ I RDE H+ +I + + PH ++ M A E
Sbjct: 177 SRMLMPGSADIFKMINRDELSHVRLYQKLIPEARKVFPH-----SVEQIYEMFDMAVNYE 231
Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDL 329
+ + + +G+ S E+Y +++AN R IGLEPL+ Y+++P+ + D
Sbjct: 232 CRWTNHIVGNNILGITESSTEKYTKYLANIRLRSIGLEPLYPEPKYSKSPYTHLERFSDT 291
Query: 330 KK----EKNFFETRVTEYQQGAELK-WD 352
KK + NFFE VT Y + L WD
Sbjct: 292 KKAAHTKANFFEATVTSYVMSSGLTGWD 319
>gi|225850104|ref|YP_002730338.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella
marina EX-H1]
gi|225645787|gb|ACO03973.1| ribonucleoside-diphosphate reductase, beta subunit [Persephonella
marina EX-H1]
Length = 329
Score = 173 bits (437), Expect = 5e-41, Method: Composition-based stats.
Identities = 90/309 (29%), Positives = 153/309 (49%), Gaps = 6/309 (1%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
+Y E Y W P E+ +Q D+ +KS LT E+ + ++G+FASSE LV
Sbjct: 23 RYPVFKEIYTKQKKAVWFPEELNIQQDVLDYKS---LTPTEKDLFDTSVGYFASSELLVQ 79
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
N + + L++P + Q F E +HS F+ I+ + +D ++N+ E +
Sbjct: 80 NVLGNGFFPVLTDPYAKMSFSTQMFMENIHSDFFEIILNTFEMDRKRIYNITLEDKLLME 139
Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
K ++ ++ T + ++ L + + ++ EGM+FY+ FA ++ KM
Sbjct: 140 KQELIIRAVDRITYGKADPDTLEGKKQILTAILLNNIIQEGMFFYSAFAHFFAMKDTGKM 199
Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE-FQQKSRTMLHEATLLEIAYA 276
+ + I+ DESLHL GI+ I I ENP + E F + + + +A LE+ Y
Sbjct: 200 KNVVSGVELILIDESLHLQNGIEAILTIVEENPEIVDDEKFVENIKETIIDAVELELNYL 259
Query: 277 HETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
G++ E+YM++IA+RR ++G +P FK +NP ++ + D+KK NF
Sbjct: 260 KTKFGGTTIFGVSYKELEKYMKYIADRRLEELGFDPQFKIDQNPLKFLQKE-DVKKLTNF 318
Query: 336 FETRVTEYQ 344
FE TEY
Sbjct: 319 FEVSSTEYT 327
>gi|190896512|gb|ACE96769.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896530|gb|ACE96778.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats.
Identities = 62/244 (25%), Positives = 110/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E +HS + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ S + V + EG++F F I L + M G
Sbjct: 63 QWALRWIDGSES--------------CAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|58700135|ref|ZP_00374651.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Drosophila ananassae]
gi|58533347|gb|EAL57830.1| ribonucleoside-diphosphate reductase, beta subunit [Wolbachia
endosymbiont of Drosophila ananassae]
Length = 225
Score = 172 bits (435), Expect = 8e-41, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 11/234 (4%)
Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
L + E +H + Y++ ++G+ E E + + + ++ K + L++ ++
Sbjct: 1 MMLASFSNMETIHIAAYSYLLDTIGMPESE-YQAFLKYDAMRKKYEYMLEFEES------ 53
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
K + + L VF EG+ + FA +L+ R KM G+ + + RDE+LH
Sbjct: 54 ---KKHDKKHVAKTLAVFGAFTEGLQLFASFAILLNFQRFGKMKGMGQIIAWSARDETLH 110
Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
N I + N EN +W EF+++ + LE + G GL+A
Sbjct: 111 TNSIIMLFNTFIKENNEIWDNEFKEELYSACRTIVELEDEFIKLAFDLGDVEGLSAEEVR 170
Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
Y++++ANRR Q+GLE ++ +NP PW+ E+++ + NFFE RVTEY + A
Sbjct: 171 NYIRYVANRRLMQLGLESIYDVNDNPIPWLDEILNGVEHTNFFENRVTEYSRAA 224
>gi|172054963|ref|YP_001806290.1| ribonucleoside-diphosphate reductase subunit beta [Cyanothece sp.
ATCC 51142]
gi|171701244|gb|ACB54224.1| ribonucleoside-diphosphate reductase beta subunit [Cyanothece sp.
ATCC 51142]
Length = 347
Score = 172 bits (435), Expect = 8e-41, Method: Composition-based stats.
Identities = 82/349 (23%), Positives = 150/349 (42%), Gaps = 23/349 (6%)
Query: 8 SPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
SPI + N + + + + +V L +YGWA Y + +W+P + D
Sbjct: 9 SPIFNPTGKDNKEKRHLWGGDTTNVINLNETRYGWARTIYQTMREGYWIPQRTDLSQDKL 68
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L ER +K L + +S+ NI + R+++ PE R L Q +EA+
Sbjct: 69 DY---VNLIPGERRALKGILSYLNFLDSVQVANIPE-LSRYITAPEARMCLAEQTSQEAM 124
Query: 127 HSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H T+QYI S+ + + E+++ +++ + + + Y QTL+ + E
Sbjct: 125 HGETYQYITESIIPENEQHEVYDFWKKDLLLNERCEFIASYYQTLAD--------NPCGE 176
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + EG+ FY GF +L + ++ G A+ + I DE H++ +I +
Sbjct: 177 TYFMALIGDYLLEGLLFYQGFLFFYNLASSQRLAGCAKLIKQINMDELTHVSLYQKLITE 236
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
K + + + + + EI + + +G++ S E Y +++AN R
Sbjct: 237 AKTKFSY-----SEDEITELFVNTVEKEIEWTNHIFDGQILGVSEASTEAYTKYLANLRL 291
Query: 305 HQIGLEPLFKYTENP---FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
IG+ ++ ENP W K + FFET VT Y Q +K
Sbjct: 292 KAIGISAIYPEVENPYAHLDWADFKGIGKSKAAFFETEVTGYAQPTAVK 340
>gi|326782198|ref|YP_004322599.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1]
gi|310004405|gb|ADO98798.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-HM1]
Length = 395
Score = 172 bits (435), Expect = 9e-41, Method: Composition-based stats.
Identities = 79/342 (23%), Positives = 131/342 (38%), Gaps = 27/342 (7%)
Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
V+ + M + + + KY + W P EV +Q D + +K+ LT
Sbjct: 28 VDTKKQPMFFGQPLGMQRYDEFKYPVFDKLTTQQLGYFWRPEEVSLQKDRSDYKT---LT 84
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+++ + NL + +S+ +A + S PE + E +HS ++ YII
Sbjct: 85 PEQKHIYTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNVWQLMEMIHSRSYTYII 144
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-----------------TGT 178
++ D E+F+ + I ++A L + T
Sbjct: 145 KNVYPDASEVFDTVLDDDKIMSRAESVTAAYDELINAEHEFDSGNAWKFAAEGHPAGTYD 204
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH---L 235
+ + L + + EG+ FY FA + G M G A+ I RDES H
Sbjct: 205 RKELKRKLYRAVLNVNILEGIRFYVSFACSFAFGELKVMEGSAKIISLIARDESQHLVLT 264
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
I E +E + M A E A+A G +GLN Q
Sbjct: 265 QQIIKKWQDGDDEEMVRIAEEEKSNVLKMFKNAVEEEKAWASYLFKNGSMIGLNEKLLGQ 324
Query: 295 YMQFIANRRCHQIGLEPLFKYTE--NPFPWMSEVIDLKKEKN 334
Y++F ANRR IGL+P++ + NP PW ++ K ++N
Sbjct: 325 YVEFTANRRMKAIGLDPIYDISPRNNPLPWTQYWLNSKGQQN 366
>gi|289664735|ref|ZP_06486316.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
campestris pv. vasculorum NCPPB702]
Length = 349
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 79/353 (22%), Positives = 146/353 (41%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R ++N ++ + + Y + Y N W+P EV M+
Sbjct: 5 ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L+ E+ +G A+ +S I + ++++P
Sbjct: 65 GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120
Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ D+ +F + R P+I + + + +D
Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRD 172
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA +L R N+M G + +I RDE H F +
Sbjct: 173 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 232
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I EN L E A LE + E + G G++ +Y+++ A
Sbjct: 233 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 291
Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L++ +N PW+ D + + +FFE R Y++
Sbjct: 292 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 344
>gi|209972895|ref|YP_002300342.1| gp4 [Bacillus phage SPO1]
gi|209871215|gb|ACI90971.1| gp4 [Bacillus phage SPO1]
Length = 346
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 80/346 (23%), Positives = 149/346 (43%), Gaps = 20/346 (5%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
L I+ R ++ + S + ++Y + Y +N W+P + + +D+
Sbjct: 4 LKEIKLMTPRYPNRGTDIIGGKMSGIMNWNDIRYPQMYTIYKQIRSNFWIPQRISLVEDV 63
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ L + +G ++ +S+ +VL R LS P + A +EA
Sbjct: 64 RQF---PNLPKRTQEAYLDVIGQLSTLDSIQTR-LVLEFGRFLSEPTYQPIAANIAQQEA 119
Query: 126 VHSHTFQYIITSLGLD---EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
H ++ Y+++S+ D + E+F+ + + + + +Y Q +
Sbjct: 120 THEESYSYVLSSVVPDTNKQNEVFDKAKTNEDVLKRNDRVYKYYQEFVD--------NPT 171
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
+ V VV EG++FY+ F +L R + MVG + YI RDE H F V+
Sbjct: 172 PQTFFRALVACVVLEGIYFYSAFTFFYNLARNHLMVGTSTMINYIQRDEVAHAYFFSQVL 231
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+ E P L T+E M+ EA LEI Y+ + + GL+ E Y++ + NR
Sbjct: 232 RYLMAERPELHTEENVNFIYDMMQEAADLEIEYSQKIL-HDIPGLDLEELEGYIKSLCNR 290
Query: 303 RCHQIGLEPLFKYTENPFPWM---SEVIDLKKEKNFFETRVTEYQQ 345
R +GL+ ++ EN PWM + + + + + FE + Y++
Sbjct: 291 RLRGVGLDDIYAGVENSMPWMIAFDDGSNNQTKSDMFEQKSRNYKK 336
>gi|190896528|gb|ACE96777.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q + +HS + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIDNIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ D + F + L + EG++F F I L + M G
Sbjct: 63 QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|325919223|ref|ZP_08181270.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
19865]
gi|325923021|ref|ZP_08184721.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
19865]
gi|325546491|gb|EGD17645.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
19865]
gi|325550297|gb|EGD21104.1| ribonucleotide reductase, beta subunit [Xanthomonas gardneri ATCC
19865]
Length = 347
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 78/353 (22%), Positives = 145/353 (41%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R ++N ++ + + Y + Y N W+P EV M+
Sbjct: 3 ATPLERIKILEPRHPNRSTAIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L+ E+ +G A+ +S I + ++++P
Sbjct: 63 GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118
Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ D+ +F + R P+I + + +D
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFELARTHPTIIKRNAPIMGAYDDFL--------RD 170
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA +L R N+M G + +I RDE H F +
Sbjct: 171 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I EN L + A LE + E + G G++ +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 289
Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L++ +N PW+ D + + +FFE R Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342
>gi|190896524|gb|ACE96775.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896534|gb|ACE96780.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E +HS + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ D + F + L + EG++F F I L + M G
Sbjct: 63 QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|285016983|ref|YP_003374694.1| ribonucleotide-diphosphate reductase beta subunit protein
[Xanthomonas albilineans GPE PC73]
gi|283472201|emb|CBA14708.1| probable ribonucleotide-diphosphate reductase beta subunit protein
[Xanthomonas albilineans]
Length = 346
Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 77/333 (23%), Positives = 142/333 (42%), Gaps = 19/333 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N + + + Y + Y N W+P EV M+ D + L+ E+
Sbjct: 22 IINGTTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKGDAKQY---GELSAREKNAY 78
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+G A+ +S I + ++++P +E +H+ ++ Y++ S+
Sbjct: 79 DSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASIAGLA 137
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
D+ +F + R P+I A+ +Q ++ E L + + EG+
Sbjct: 138 DQNRVFEIARTHPTIVARNQPIMQAYDDF--------MREKTAETLLRSLIQSSILEGIN 189
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R N+M G + +I RDE H F ++I I EN L T E
Sbjct: 190 FYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISELIRAIIGENAELQTNELTDY 249
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
A LE ++ E + G G++ QY+++ AN+ +G+E L+ ++N
Sbjct: 250 VHQAFEHAIRLETEWSSEVL-DGIEGIDVDEMIQYVKYRANKMSGMLGIEKLYTGASDNV 308
Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
PW+ D + + +FFE R Y++
Sbjct: 309 MPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 341
>gi|325914792|ref|ZP_08177129.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria
ATCC 35937]
gi|325538985|gb|EGD10644.1| ribonucleotide reductase, beta subunit [Xanthomonas vesicatoria
ATCC 35937]
Length = 349
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 78/353 (22%), Positives = 146/353 (41%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R ++N ++ + + Y + Y N W+P EV M+
Sbjct: 5 ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L+ E+ +G A+ +S I + ++++P
Sbjct: 65 GDARQYNE---LSSREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120
Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ D+ +F + R P+I + + + +D
Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRD 172
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA +L R N+M G + +I RDE H F +
Sbjct: 173 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 232
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I EN L + A LE + E + G G++ +Y+++ A
Sbjct: 233 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 291
Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L++ +N PW+ D + + +FFE R Y++
Sbjct: 292 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 344
>gi|66770372|ref|YP_245134.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
campestris pv. campestris str. 8004]
gi|188993572|ref|YP_001905582.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
campestris pv. campestris str. B100]
gi|66575704|gb|AAY51114.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
campestris pv. campestris str. 8004]
gi|167735332|emb|CAP53546.1| Ribonucleoside-diphosphate reductase beta chain [Xanthomonas
campestris pv. campestris]
Length = 347
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R ++N + + + Y + Y N W+P EV M+
Sbjct: 3 ATPLERIKILEPRHPNRSTAIINGSTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L+ E+ +G A+ +S I + ++++P
Sbjct: 63 GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118
Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ D+ +F + R P+I + + +D
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDDF--------MRD 170
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA +L R N+M G + +I RDE H F +
Sbjct: 171 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I EN L + A LE + E + G G++ +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 289
Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L++ +N PW+ D + + +FFE R Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342
>gi|94499220|ref|ZP_01305758.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp.
RED65]
gi|94428852|gb|EAT13824.1| ribonucleotide-diphosphate reductase beta subunit [Oceanobacter sp.
RED65]
Length = 376
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 73/332 (21%), Positives = 138/332 (41%), Gaps = 25/332 (7%)
Query: 18 NVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ + M +V++ KY + + W P EV + D + L +
Sbjct: 12 DAFSQPMFFGENVNVSRYDTQKYKIFEQLIEKQLSFFWRPEEVDLSTDRKDF---AALPE 68
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II
Sbjct: 69 HEKHIFLSNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIR 128
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-PSFTTGTKDADQEFLQDLFVFYV- 194
++ D ++F+ IT +A +Y L ++ + D E + +
Sbjct: 129 NVISDPSKVFDDIVSNEYITKRAESVTKYYDDLIEGVTYYQNLGEGDHEINGETIHVSLR 188
Query: 195 --------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
V E + FY FA + KM G A+ + I RDE+LHL
Sbjct: 189 DLKRKLYLTMASVNVLEAIRFYVSFACSFAFAERTKMEGNAKIIKLIARDEALHLTGTQH 248
Query: 241 VINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
++ ++P + E +++ + EA E +A G +GLN QY
Sbjct: 249 MMQIWALGKDDPEMGEIANECKKQVIEIFREAAQQEKDWAEYLFKDGSMIGLNKDILCQY 308
Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+++I N+R IGL+ +F+ +NP PW++ +
Sbjct: 309 VEYITNQRLGAIGLDNIFETRQNPIPWINAWL 340
>gi|157325080|ref|YP_001468505.1| gp125 [Listeria phage A511]
gi|66732769|gb|AAY53360.1| gp57 [Listeria phage P100]
gi|66733088|gb|AAY52906.1| gp125 [Listeria phage A511]
Length = 343
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 80/328 (24%), Positives = 149/328 (45%), Gaps = 19/328 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N + + ++Y + Y N+W+P EV M+ D + L+++E+
Sbjct: 19 IINGEASGIVNWNDIRYPSFYRAYKELTTNYWLPDEVDMKSDAKQYNH---LSEEEKYAF 75
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+G A+ +S I I ++S+ A +EA+H+ ++ Y++ S+
Sbjct: 76 DSIIGLLATLDSPQTRFIY-NIAEYVSDASVHAITAIIAQQEAIHNESYSYVLASITNLQ 134
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F R P+I + ++ + + E + V + EG+
Sbjct: 135 EQNRVFEEARTHPTIIKRNAPIMKSYDDFMN--------NKTPENMVKALVQSSILEGIN 186
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R NKM G + +I RDE H F ++I I ENP L T E
Sbjct: 187 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISELIRAIVGENPELQTDELNDY 246
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
A LE A++ E + +G G++ Y+++ AN+ +GL+P++ +TEN
Sbjct: 247 VYASFRHAVELEQAWSSEVL-QGIEGIDVEEMLDYVKYRANKMLGMLGLQPMYQGHTENS 305
Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
W+ D + + +FFE R + Y++
Sbjct: 306 MTWIKAYADNFTETKTDFFEMRNSSYKK 333
>gi|21233407|ref|NP_639324.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|21115247|gb|AAM43206.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
campestris pv. campestris str. ATCC 33913]
Length = 347
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 78/353 (22%), Positives = 145/353 (41%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R ++N ++ + + Y + Y N W+P EV M+
Sbjct: 3 ATPLERIKILEPRHPNRSTAIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L+ E+ +G A+ +S I + ++++P
Sbjct: 63 GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118
Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ D+ +F + R P+I + + +D
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDDF--------MRD 170
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA +L R N+M G + +I RDE H F +
Sbjct: 171 KTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I EN L + A LE + E + G G++ +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETVWTAEVL-DGIDGIDVDEMIRYVKYRA 289
Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L++ +N PW+ D + + +FFE R Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342
>gi|255928974|ref|YP_003097286.1| ribonucleotide reductase B subunit [Synechococcus phage S-RSM4]
gi|255705260|emb|CAR63249.1| ribonucleotide reductase B subunit [Synechococcus phage S-RSM4]
Length = 394
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 73/353 (20%), Positives = 132/353 (37%), Gaps = 27/353 (7%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ G++ + + + K V + KY + W P EV +
Sbjct: 14 SKVEGMT-VFNTTQLDSTKQKMFFGPPLGVQRYDKFKYPVFDKLTQQQLGYFWRPEEVSL 72
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
Q D A ++ L D ++ + NL + +S+ +A + S PE +
Sbjct: 73 QKDRADYQV---LNDAQKHIFTSNLKYQILLDSVQGRGPGMAFMPYCSLPELEGAMNIWQ 129
Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK---------------ANW--ALQ 164
E VHS ++ +II ++ D ++F+ + I ++ W Q
Sbjct: 130 TMEMVHSRSYTHIIKNVYADPSDVFDKILDDEKILSRAKSVTHAYDEFLRAAQEWGAGKQ 189
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ L + + L + EG+ FY FA + G + G A+
Sbjct: 190 WEHALEGVDNAIWELNDLKRKLYRAVANVYILEGIRFYVSFACSFAFGELKLLEGSAKII 249
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTK---EFQQKSRTMLHEATLLEIAYAHETMP 281
I RDES H+ +++N+ K + + E ++ M + E +A
Sbjct: 250 GLIARDESQHMTITQNILNKWKEGDDPEMVQIAKEEEENVYDMFRQCVEEEKLWAEYLFK 309
Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKK 331
G +GLN +Y+++ ANRR IGL+ +F + NP PW + K
Sbjct: 310 DGSIIGLNDKLLSKYVEWTANRRLKSIGLKAIFDTPVSNNPLPWTEHWLSSKG 362
>gi|190896572|gb|ACE96799.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896574|gb|ACE96800.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896576|gb|ACE96801.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896578|gb|ACE96802.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + E R + Q E +HS + ++ + D E LF+ VP + KA
Sbjct: 3 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ D + F + L + EG++F F I L + M G
Sbjct: 63 QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EEQVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|89092731|ref|ZP_01165684.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum
sp. MED92]
gi|89083243|gb|EAR62462.1| ribonucleotide-diphosphate reductase beta subunit [Oceanospirillum
sp. MED92]
Length = 376
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 74/333 (22%), Positives = 133/333 (39%), Gaps = 27/333 (8%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ + M RS +V + KY + + W P EV + D + + +
Sbjct: 12 DATKEPMFFGRSVNVARYDKQKYPIFEKLIEKQLSFFWRPEEVDLSTDRKDF---MNMPE 68
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + NL + +S+ + +A +S PE + AF E +HS ++ +II
Sbjct: 69 HEKHIFLSNLKYQTLLDSVQGRSPNIAFLPVVSLPELETWFETWAFSETIHSRSYTHIIR 128
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FTTGTK 179
++ + E+F+ P I +A+ + + S + T +
Sbjct: 129 NIITEPSEVFDQIVTNPEIIRRADSVTRLYDEFINLSSVHSIHGEGLHTVDGKVYDTSMR 188
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ ++ L V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 189 NLKKKLYLTLVSINVL-EAIRFYVSFACSFAFAERAIMEGNAKIIKLIARDEALHLTGTQ 247
Query: 240 DVINQI----KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQ 294
++N + + KE +Q + EA E +A +GLNA
Sbjct: 248 HMLNIMASGADDPDYKDIAKECEQDVYNIFKEAAQQEKDWAQYLFREGSMIGLNAQILSD 307
Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
Y+++I N R + LE +F +NP PWM+ +
Sbjct: 308 YVEYITNVRMKALNLEEIFPARQNPLPWMNAWL 340
>gi|156847976|ref|XP_001646871.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM
70294]
gi|156117552|gb|EDO19013.1| hypothetical protein Kpol_2002p84 [Vanderwaltozyma polyspora DSM
70294]
Length = 351
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 64/332 (19%), Positives = 131/332 (39%), Gaps = 27/332 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +L L P+KY ++ Y W E+ D+ W + +T DE+
Sbjct: 24 KDESILTENKRRFVLFPIKYHEIYDAYKKREALFWTAEELDFSKDIQNWND-DKITKDEK 82
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
R L FA S + N+ + PE + + Q + +H + +I SL
Sbjct: 83 EYFIRLLALFA-SNDMDRENLTEHLSAECQTPEAKCFYGFQIMVDNIHQEVYGILIDSLV 141
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D+ + +F +++ +I K +A + + + D F + L V
Sbjct: 142 KDDEKRTSMFEEIKDLTNIKEKIEYAKSWFE------------NEDNLFGEKLIAEAAVL 189
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
G++ + + +LS + + G ++RD LH++F + +K +
Sbjct: 190 -GIFSLSAYVSVLSFQKGGLIPGFVTGVDNMLRDRGLHVDFCCLMYAHLKNQIDS----- 243
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ + ++ +A +E + +P V L Q+++++A+ G E + T
Sbjct: 244 --EIVQKIIVDAVEIEKKSLLKALPIIKVNLKIDEMNQFIEYVADSILVAFGNEKHYNAT 301
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
NP+ +M V+ L N + + Q+ +E
Sbjct: 302 -NPYEFMENVV-LPGNTNSLAKTIADAQKASE 331
>gi|188578920|ref|YP_001915849.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
oryzae pv. oryzae PXO99A]
gi|188523372|gb|ACD61317.1| ribonucleoside-diphosphate reductase, beta subunit [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 347
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 79/353 (22%), Positives = 146/353 (41%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R +LN ++ + + Y + Y N W+P EV M+
Sbjct: 3 ATPLERIKILEPRHPNRSTSILNGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L+ E+ +G A+ +S I + ++++P
Sbjct: 63 GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118
Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ D+ +F + R P+I + + + ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRE 170
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA +L R N+M G + +I RDE H F +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I EN L E A LE + E + G G++ +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289
Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L++ +N PW+ D + + +FFE R Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342
>gi|315304277|ref|ZP_07874626.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
ivanovii FSL F6-596]
gi|313627356|gb|EFR96140.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
ivanovii FSL F6-596]
Length = 349
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 78/328 (23%), Positives = 147/328 (44%), Gaps = 19/328 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N + + + Y + Y N+W+P EV M+ D + L++ E+
Sbjct: 25 IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+G A+ +S I I ++++P A +E +H+ ++ Y++ S+
Sbjct: 82 DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F + R P+I + ++ + + E L + + EG+
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMEAYDEFMN--------NKTGETLVKALIQSSILEGIN 192
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R NKM G + +I RDE H F +VI I ENP L T E +
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVEY 252
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
+ A LE ++ E M +G G++ Y+++ AN+ +G+ L+ ++EN
Sbjct: 253 THEAFRHAVELETEWSEEVM-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSENT 311
Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
W+ D + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339
>gi|289435502|ref|YP_003465374.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289171746|emb|CBH28292.1| ribonucleoside-diphosphate reductase beta chain [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|313632343|gb|EFR99385.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
seeligeri FSL N1-067]
gi|313636848|gb|EFS02469.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
seeligeri FSL S4-171]
Length = 349
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 76/328 (23%), Positives = 147/328 (44%), Gaps = 19/328 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N + + + Y + Y N+W+P EV M+ D + L++ E+
Sbjct: 25 IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+G A+ +S I I ++++P A +E +H+ ++ Y++ S+
Sbjct: 82 DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F + R P+I + + + + E L + + EG+
Sbjct: 141 EQKRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGIN 192
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R NKM G + +I RDE H F +VI I ENP L T+E +
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEY 252
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
+ A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N
Sbjct: 253 THEAFRHAVDLETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311
Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
W+ D + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339
>gi|58580098|ref|YP_199114.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
oryzae pv. oryzae KACC10331]
gi|84622097|ref|YP_449469.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
oryzae pv. oryzae MAFF 311018]
gi|58424692|gb|AAW73729.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae
pv. oryzae KACC10331]
gi|84366037|dbj|BAE67195.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas oryzae
pv. oryzae MAFF 311018]
Length = 347
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 78/353 (22%), Positives = 146/353 (41%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R ++N ++ + + Y + Y N W+P EV M+
Sbjct: 3 ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L+ E+ +G A+ +S I + ++++P
Sbjct: 63 GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118
Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ D+ +F + R P+I + + + ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRE 170
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA +L R N+M G + +I RDE H F +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I EN L E A LE + E + G G++ +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289
Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L++ +N PW+ D + + +FFE R Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342
>gi|289670858|ref|ZP_06491933.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
campestris pv. musacearum NCPPB4381]
Length = 349
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 77/353 (21%), Positives = 146/353 (41%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R ++N ++ + + Y + Y N W+P EV M+
Sbjct: 5 ATPLERIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 64
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L+ E+ +G A+ +S I + ++++P
Sbjct: 65 GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 120
Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ D+ +F + R P+I + + + ++
Sbjct: 121 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRE 172
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA +L R N+M G + +I RDE H F +
Sbjct: 173 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 232
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I EN L + A LE + E + G G++ +Y+++ A
Sbjct: 233 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 291
Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L++ +N PW+ D + + +FFE R Y++
Sbjct: 292 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 344
>gi|315283233|ref|ZP_07871471.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
marthii FSL S4-120]
gi|313613124|gb|EFR87028.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
marthii FSL S4-120]
Length = 349
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 75/328 (22%), Positives = 147/328 (44%), Gaps = 19/328 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N + + + Y + Y N+W+P EV M+ D + L+++E+
Sbjct: 25 IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PNLSEEEKYAF 81
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+G A+ +S I I ++++P +E +H+ ++ Y++ S+
Sbjct: 82 DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIGQQEVIHNESYSYVLASITNLQ 140
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F + R P+I + ++ + + E L + + EG+
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMEAYDDFMN--------NKTGETLVKALIQSSILEGIN 192
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R NKM G + +I RDE H F +VI I ENP L T E +
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVEY 252
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
+ A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N
Sbjct: 253 THEAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311
Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
W+ D + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339
>gi|254523600|ref|ZP_05135655.1| ribonucleoside-diphosphate reductase, beta subunit
[Stenotrophomonas sp. SKA14]
gi|219721191|gb|EED39716.1| ribonucleoside-diphosphate reductase, beta subunit
[Stenotrophomonas sp. SKA14]
Length = 346
Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats.
Identities = 80/353 (22%), Positives = 148/353 (41%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R ++N R+ + + Y + Y N W+P EV M+
Sbjct: 2 ATPLDRIKILEPRHPNRSTGIINGRTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L+ E+ +G A+ +S I + ++++P
Sbjct: 62 ADARQY---GELSGREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117
Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ ++ +F + R P+I + + ++
Sbjct: 118 QEVIHNESYSYVLASITDLPNQNRVFELARTHPTIIKRNAPIMGAYDDF--------MRE 169
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA ++ R N+M G + +I RDE H F +
Sbjct: 170 KTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQNRMTGTGKIISFINRDELAHTKFISE 229
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I ENP L T E A LE ++ E + G G++ +Y+++ A
Sbjct: 230 LIRAIIGENPELQTNELTAYVHQAFEHAIELETQWSSEVL-DGIDGIDVEEMTRYVKYRA 288
Query: 301 NRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L+ T+N PW+ D + + +FFE R Y++
Sbjct: 289 NKMAGMLGIERLYSDTTDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNVDN 341
>gi|46908387|ref|YP_014776.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes serotype 4b str. F2365]
gi|47091823|ref|ZP_00229618.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
monocytogenes str. 4b H7858]
gi|226224761|ref|YP_002758868.1| ribonucleoside-diphosphate reductase, subunit beta [Listeria
monocytogenes Clip81459]
gi|254825283|ref|ZP_05230284.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
NrdB [Listeria monocytogenes FSL J1-194]
gi|254853280|ref|ZP_05242628.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
NrdB [Listeria monocytogenes FSL R2-503]
gi|254931734|ref|ZP_05265093.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
NrdB [Listeria monocytogenes HPB2262]
gi|255519998|ref|ZP_05387235.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes FSL J1-175]
gi|300764038|ref|ZP_07074034.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
monocytogenes FSL N1-017]
gi|46881658|gb|AAT04953.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
monocytogenes serotype 4b str. F2365]
gi|47019834|gb|EAL10572.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
monocytogenes str. 4b H7858]
gi|225877223|emb|CAS05937.1| Putative ribonucleoside-diphosphate reductase, subunit beta
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|258606640|gb|EEW19248.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
NrdB [Listeria monocytogenes FSL R2-503]
gi|293583289|gb|EFF95321.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
NrdB [Listeria monocytogenes HPB2262]
gi|293594529|gb|EFG02290.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
NrdB [Listeria monocytogenes FSL J1-194]
gi|300515379|gb|EFK42430.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
monocytogenes FSL N1-017]
gi|313617790|gb|EFR90013.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
innocua FSL S4-378]
gi|328465961|gb|EGF37142.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes 1816]
gi|328472177|gb|EGF43048.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes 220]
gi|332312605|gb|EGJ25700.1| Ribonucleoside-diphosphate reductase [Listeria monocytogenes str.
Scott A]
Length = 349
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 76/328 (23%), Positives = 147/328 (44%), Gaps = 19/328 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N + + + Y + Y N+W+P EV M+ D + L++ E+
Sbjct: 25 IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+G A+ +S I I ++++P A +E +H+ ++ Y++ S+
Sbjct: 82 DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F + R P+I + + + + E L + + EG+
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGIN 192
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R NKM G + +I RDE H F +VI I ENP L T+E +
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEY 252
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
+ A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N
Sbjct: 253 THDAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311
Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
W+ D + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339
>gi|190896570|gb|ACE96798.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896582|gb|ACE96804.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + E R + Q E +HS + ++ + D E LF+ VP + KA
Sbjct: 3 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ D + F + L + EG++F F I L + M G
Sbjct: 63 QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EEQVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNAA-NPFDWM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|190896544|gb|ACE96785.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E + S + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ D + F + L + EG++F F I L + M G
Sbjct: 63 QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|16804193|ref|NP_465678.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes EGD-e]
gi|116873587|ref|YP_850368.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
welshimeri serovar 6b str. SLCC5334]
gi|217963685|ref|YP_002349363.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
monocytogenes HCC23]
gi|224500181|ref|ZP_03668530.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes Finland 1988]
gi|224501047|ref|ZP_03669354.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes FSL R2-561]
gi|254826956|ref|ZP_05231643.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
NrdB [Listeria monocytogenes FSL N3-165]
gi|254831409|ref|ZP_05236064.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes 10403S]
gi|255028522|ref|ZP_05300473.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes LO28]
gi|284802601|ref|YP_003414466.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes 08-5578]
gi|284995743|ref|YP_003417511.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes 08-5923]
gi|290893101|ref|ZP_06556089.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
NrdB [Listeria monocytogenes FSL J2-071]
gi|16411624|emb|CAD00232.1| lmo2154 [Listeria monocytogenes EGD-e]
gi|116742465|emb|CAK21589.1| ribonucleoside-diphosphate reductase beta chain [Listeria
welshimeri serovar 6b str. SLCC5334]
gi|217332955|gb|ACK38749.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
monocytogenes HCC23]
gi|258599337|gb|EEW12662.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
NrdB [Listeria monocytogenes FSL N3-165]
gi|284058163|gb|ADB69104.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes 08-5578]
gi|284061210|gb|ADB72149.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes 08-5923]
gi|290557263|gb|EFD90789.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
NrdB [Listeria monocytogenes FSL J2-071]
gi|307571740|emb|CAR84919.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
monocytogenes L99]
Length = 349
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 76/328 (23%), Positives = 147/328 (44%), Gaps = 19/328 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N + + + Y + Y N+W+P EV M+ D + L++ E+
Sbjct: 25 IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+G A+ +S I I ++++P A +E +H+ ++ Y++ S+
Sbjct: 82 DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F + R P+I + + + + E L + + EG+
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGIN 192
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R NKM G + +I RDE H F +VI I ENP L T+E +
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEY 252
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
+ A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N
Sbjct: 253 THEAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311
Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
W+ D + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339
>gi|47095728|ref|ZP_00233334.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
monocytogenes str. 1/2a F6854]
gi|254899145|ref|ZP_05259069.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes J0161]
gi|254912714|ref|ZP_05262726.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818]
gi|254937041|ref|ZP_05268738.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
NrdB [Listeria monocytogenes F6900]
gi|47015871|gb|EAL06798.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
monocytogenes str. 1/2a F6854]
gi|258609644|gb|EEW22252.1| oxygen-dependent ribonucleotide-diphosphate reductase beta subunit
NrdB [Listeria monocytogenes F6900]
gi|293590709|gb|EFF99043.1| ribonucleoside-diphosphate reductase [Listeria monocytogenes J2818]
Length = 349
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 76/328 (23%), Positives = 148/328 (45%), Gaps = 19/328 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N + + + Y + Y N+W+P EV M+ D + + L++ E+
Sbjct: 25 IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQYPT---LSEQEKYAF 81
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+G A+ +S I I ++++P A +E +H+ ++ Y++ S+
Sbjct: 82 DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F + R P+I + + + + E L + + EG+
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGIN 192
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R NKM G + +I RDE H F +VI I ENP L T+E +
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEY 252
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
+ A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N
Sbjct: 253 THEAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311
Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
W+ D + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339
>gi|313622843|gb|EFR93161.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
innocua FSL J1-023]
Length = 349
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 76/328 (23%), Positives = 147/328 (44%), Gaps = 19/328 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N + + + Y + Y N+W+P EV M+ D + L++ E+
Sbjct: 25 IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+G A+ +S I I ++++P A +E +H+ ++ Y++ S+
Sbjct: 82 DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F + R P+I + + + + E L + + EG+
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMTAYDDFMN--------NKTGETLVKALIQSSILEGIN 192
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R NKM G + +I RDE H F +VI I ENP L T+E +
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEY 252
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
+ A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N
Sbjct: 253 THDAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311
Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
W+ D + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339
>gi|166710317|ref|ZP_02241524.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
oryzae pv. oryzicola BLS256]
Length = 347
Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 78/353 (22%), Positives = 146/353 (41%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R ++N ++ + + Y + Y N W+P EV M+
Sbjct: 3 ATPLDRIKILEPRHPNRSTSIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L+ E+ +G A+ +S I + ++++P
Sbjct: 63 GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118
Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ D+ +F + R P+I + + + ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRE 170
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA +L R N+M G + +I RDE H F +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I EN L E A LE + E + G G++ +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAINLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289
Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L++ +N PW+ D + + +FFE R Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342
>gi|190896536|gb|ACE96781.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896560|gb|ACE96793.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896566|gb|ACE96796.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E + S + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ D + F + L + EG++F F I L + M G
Sbjct: 63 QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDWM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|190896568|gb|ACE96797.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896580|gb|ACE96803.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + E R + Q E +HS + ++ + D E LF+ VP + KA
Sbjct: 3 RFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ D + F + L + EG++F F I L + M G
Sbjct: 63 QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EEQVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF WM E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNAA-NPFDWM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|78049716|ref|YP_365891.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|78038146|emb|CAJ25891.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 347
Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 78/353 (22%), Positives = 146/353 (41%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R ++N ++ + + Y + Y N W+P EV M+
Sbjct: 3 ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L+ E+ +G A+ +S I + ++++P
Sbjct: 63 GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118
Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ D+ +F + R P+I + + + ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRE 170
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA +L R N+M G + +I RDE H F +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISE 230
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I EN L E A LE + E + G G++ +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289
Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L++ +N PW+ D + + +FFE R Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342
>gi|16801322|ref|NP_471590.1| ribonucleotide-diphosphate reductase subunit beta [Listeria innocua
Clip11262]
gi|16414770|emb|CAC97486.1| lin2258 [Listeria innocua Clip11262]
Length = 349
Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 76/328 (23%), Positives = 147/328 (44%), Gaps = 19/328 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N + + + Y + Y N+W+P EV M+ D + L++ E+
Sbjct: 25 IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+G A+ +S I I ++++P A +E +H+ ++ Y++ S+
Sbjct: 82 DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F + R P+I + + + + E L + + EG+
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMAAYDDFMN--------NKTGETLVKALIQSSILEGIN 192
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R NKM G + +I RDE H F +VI I ENP L T+E +
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEY 252
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
+ A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N
Sbjct: 253 THDAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311
Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
W+ D + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339
>gi|239993885|ref|ZP_04714409.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas
macleodii ATCC 27126]
Length = 376
Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats.
Identities = 73/332 (21%), Positives = 132/332 (39%), Gaps = 25/332 (7%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M +V + K+ + + W P EV + D ++ LTD E+
Sbjct: 16 EPMFFGNPVNVARYDQQKHAIFEKLIEKQISFFWRPEEVDVSRDRVDFQ---KLTDPEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + +A +S PE ++ +F E +HS ++ +I+ +L
Sbjct: 73 IFISNLKYQTLLDSVQGRSPNIAFLPIISLPELETWVETWSFFETIHSRSYTHILRNLFS 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTTGTKDADQE 184
D E+F I +A +Y L + T ++
Sbjct: 133 DPSEIFEDIVVNDEIKRRAADISKYYDDLIFATQLWQTQGEGVHTVNGVAHTINMYELKK 192
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
L E + FY FA + M G ++ + I RDE+LHL+ ++N
Sbjct: 193 KLYLCMNSVNALEAIRFYVSFACTFAFAERKLMEGNSKIIRLIARDENLHLSSTQHILNL 252
Query: 245 IKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
+E ++++R + A E +A G +GLN QY+++I
Sbjct: 253 WAKGKDDPEMAQIAEECKEEARAIFMNAVEQEKQWADYLFQNGSMIGLNKEILCQYVEYI 312
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
AN+R IGL+ F+ + NP PWM+ ++
Sbjct: 313 ANQRMSAIGLDTPFEISSNPLPWMNNYLNSDN 344
>gi|21244791|ref|NP_644373.1| ribonucleotide-diphosphate reductase subunit beta [Xanthomonas
axonopodis pv. citri str. 306]
gi|325927516|ref|ZP_08188754.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans
91-118]
gi|21110489|gb|AAM38909.1| ribonucleoside-diphosphate reductase beta chain [Xanthomonas
axonopodis pv. citri str. 306]
gi|325542109|gb|EGD13613.1| ribonucleotide reductase, beta subunit [Xanthomonas perforans
91-118]
Length = 347
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 78/353 (22%), Positives = 146/353 (41%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R ++N ++ + + Y + Y N W+P EV M+
Sbjct: 3 ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L+ E+ +G A+ +S I + ++++P
Sbjct: 63 GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118
Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ D+ +F + R P+I + + + ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRE 170
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA +L R N+M G + +I RDE H F +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I EN L E A LE + E + G G++ +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDELTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289
Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L++ +N PW+ D + + +FFE R Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342
>gi|319954718|ref|YP_004165985.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237]
gi|319423378|gb|ADV50487.1| ATP-cone domain protein [Cellulophaga algicola DSM 14237]
Length = 424
Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats.
Identities = 69/338 (20%), Positives = 141/338 (41%), Gaps = 18/338 (5%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
R KR N L P +Y +E + +++W+ +E D+ +K++ LT
Sbjct: 92 RNEQSQKRKSNIFEKRINLKPYEYPELYEYVPAIRHSYWIHSEFNFTSDIQDFKTR--LT 149
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
D E+ IK + + E IY + PE A E H+ + +++
Sbjct: 150 DTEQSAIKNTMLAISQIEV-AVKGFWGDIYHKMPKPEIGSVGATFAESEVRHADAYSHLL 208
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
LGL+ F ++ P+I + + + + ++++ + + +F +
Sbjct: 209 EILGLNNE--FKNLKKKPAIMKRVQY--------LETALKNAKSEDNKDYAESILLFSLF 258
Query: 196 FEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
E + ++ F I++ + N + G++ + ++E +H +FGID+I IK ENP +
Sbjct: 259 IEHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEEQIHGDFGIDIIKIIKKENPDWFD 318
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLF 313
++ + + M +A + E + KG + L ++++ N IG+E +F
Sbjct: 319 ADYHKTIQQMCKDAFIAESSVVDWIFEKGELDFLPKDVVNEFIKNRFNNSLESIGIEKIF 378
Query: 314 KYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+ E W + I K +FF R Y + +
Sbjct: 379 EVNEELIAETEWFDDEIIGTKHGDFFVKRSINYSKRTQ 416
>gi|299822182|ref|ZP_07054068.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi
DSM 20601]
gi|299815711|gb|EFI82949.1| ribonucleotide-diphosphate reductase subunit beta [Listeria grayi
DSM 20601]
Length = 349
Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats.
Identities = 78/328 (23%), Positives = 144/328 (43%), Gaps = 19/328 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N + + + Y + Y N+W+P EV M+ D + L+++ER
Sbjct: 25 IINGVTSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKGDAKQY---PELSEEERYAY 81
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+G A+ +S I + ++++P A +E +H+ ++ Y++ S+
Sbjct: 82 DAIIGLLATLDSPQTRFIY-NVAEYVTDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F + R P+I + + + E L + + EG+
Sbjct: 141 NQNRIFELARTHPTIIKRNQPIMDAYDDFL--------EHKTGETLVKSLIQSSILEGIN 192
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R NKM G + +I RDE H F +VI I ENP L T E
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTDELVAY 252
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
+ A LE ++ E M G G++ Y+++ AN+ +G+ L+ ++EN
Sbjct: 253 THDAFRHAVELETIWSEEVME-GIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSENT 311
Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQ 345
W+ D + + +FFE R + Y++
Sbjct: 312 MTWIKAYADNFTETKTDFFEMRNSSYKK 339
>gi|315930891|gb|EFV09876.1| ribonucleotide reductase, small chain family protein [Campylobacter
jejuni subsp. jejuni 305]
Length = 305
Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats.
Identities = 79/314 (25%), Positives = 139/314 (44%), Gaps = 12/314 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
I + D+++ + + KY WA + + N W P EV D
Sbjct: 3 RKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWDLMEANTWFPKEVDTTKDA 62
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
++ LT E+ M S +S NN+ I +++ PE L RQA+EEA
Sbjct: 63 LDYRC--NLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAVLARQAYEEA 120
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
HS ++ ++ ++ + ++ M + ++ K ++ + L+ D D
Sbjct: 121 NHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSIYEELAG--------DVDDNK 172
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
L V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL ++IN +
Sbjct: 173 LLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQNMINSV 232
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
+ E P L+ E K M +A LEI + +G E+Y+ ++ ++R
Sbjct: 233 RKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTDDIIEEYIHYLVDQRLS 292
Query: 306 QIGLEPLFKYTENP 319
I L+ L+ ++P
Sbjct: 293 AINLDKLYN-AKHP 305
>gi|58532963|ref|YP_195186.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2]
gi|58331430|emb|CAF34216.1| ribonucleotide reductase A subunit [Synechococcus phage S-PM2]
Length = 394
Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats.
Identities = 75/342 (21%), Positives = 132/342 (38%), Gaps = 27/342 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ +VN + M V + KY + W P EV +Q D A ++
Sbjct: 24 KNKVNTTKQPMFFGAPLGVQRYDNFKYPVFDKLTQQQLGYFWRPEEVSLQKDRADYQQ-- 81
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L +++ + NL + +S+ +A + S PE + E VHS ++
Sbjct: 82 -LRPEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNIWQTMEMVHSRSYT 140
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE-------- 184
+II ++ D ++F+ I +A + + G ++ +
Sbjct: 141 HIIKNIYPDPSDVFDQIISDEKILERATSVTKAYDEFLQAAQEWGAGNSWEHALEEVDSA 200
Query: 185 ---------FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
L + EG+ FY FA + G M G A+ I RDES H+
Sbjct: 201 KWELKELKRKLYRAVANVYILEGIRFYVSFACSFAFGENKLMEGNAKIISLIARDESQHM 260
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKS---RTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++IN+ K + + +Q+ M + EI +A G +GLNA
Sbjct: 261 TITQNIINKWKAGDDPDMVEIAKQEENNVYDMFKKCVEEEIIWADYLFRDGSMIGLNAKL 320
Query: 292 CEQYMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKK 331
++Y+++ ANRR IG++ +F + NP PW + K
Sbjct: 321 LQKYVEWTANRRMKAIGMKQIFDVPLSNNPLPWTEHWLSSKG 362
>gi|261599112|ref|YP_003257364.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium
sp. (Periplaneta americana) str. BPLAN]
gi|261497769|gb|ACX84218.1| ribonucleotide-diphosphate reductase beta subunit [Blattabacterium
sp. (Periplaneta americana) str. BPLAN]
Length = 357
Score = 169 bits (427), Expect = 8e-40, Method: Composition-based stats.
Identities = 74/327 (22%), Positives = 133/327 (40%), Gaps = 18/327 (5%)
Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
D P +Y WA+E + N HW+ TE+ MQ D+ W LTD E+ +I L
Sbjct: 5 EDRLNFKPFEYQWAYEYWFKQQNAHWLHTEINMQSDIYDWNK--NLTDQEKNVIGDILKG 62
Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
FA +E+ V N I + PE + E +H+ + Y+ LGLD F
Sbjct: 63 FAQTETEVGNYWSEMIPKWFPIPEIKMMGQAFGSFETIHAAAYSYLNDILGLDNFHAFLE 122
Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
+ + +L + K +E + + +F EG+ ++ FA +
Sbjct: 123 DDVIMNKLK----------SLMDVRNSDHGKYNKEEIARSVALFSAAAEGVQLFSSFAVL 172
Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
LS ++N++ G+ +Q + +RDESLH G + EN + ++ + A
Sbjct: 173 LSFRKSNRLKGVGQQIIFSVRDESLHSEAGCKIFRTFCEENKG-LKEIVERSVYHGVDLA 231
Query: 269 TLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E + + + + + +M+ AN + ++G + + W
Sbjct: 232 LKNEFVFIDKIFGGRDLCTIKREELKNFMKDRANMKLRELGFFDSYHVDRRMLDNMNWFY 291
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKW 351
I +++ +FF+ R T Y + E W
Sbjct: 292 ITISGEQQTDFFDNRETGYSKPNE-DW 317
>gi|332141553|ref|YP_004427291.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas
macleodii str. 'Deep ecotype']
gi|327551575|gb|AEA98293.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas
macleodii str. 'Deep ecotype']
Length = 376
Score = 169 bits (427), Expect = 8e-40, Method: Composition-based stats.
Identities = 73/332 (21%), Positives = 132/332 (39%), Gaps = 25/332 (7%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M +V + K+ + + W P EV + D ++ LTD E+
Sbjct: 16 EPMFFGNPVNVARYDQQKHAIFEKLIEKQISFFWRPEEVDVSRDRVDFQ---KLTDPEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + +A +S PE ++ +F E +HS ++ +I+ +L
Sbjct: 73 IFISNLKYQTLLDSVQGRSPNIAFLPIISLPELETWVETWSFFETIHSRSYTHILRNLFS 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTTGTKDADQE 184
D E+F I +A +Y L + + T ++
Sbjct: 133 DPSEIFEDIVVNDEIKRRAADISKYYDDLIFATQLWQTQGEGVHTVNGTAYTINMYELKK 192
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
L E + FY FA + M G ++ + I RDE+LHL+ ++N
Sbjct: 193 KLYLCMNSVNALEAIRFYVSFACTFAFAERKLMEGNSKIIRLIARDENLHLSSTQHILNL 252
Query: 245 IKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
+E ++++R + A E +A G +GLN QY+++I
Sbjct: 253 WAKGKDDPEMAQIAQECKEEARAIFMNAVEQEKEWADYLFKTGSMIGLNKEILCQYVEYI 312
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
AN+R IGL+ F + NP PWM+ ++
Sbjct: 313 ANQRMSAIGLDTPFDISSNPLPWMNNYLNSDN 344
>gi|294625675|ref|ZP_06704297.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 11122]
gi|294664800|ref|ZP_06730124.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 10535]
gi|292600044|gb|EFF44159.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 11122]
gi|292605431|gb|EFF48758.1| ribonucleotide-diphosphate reductase beta subunit [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 10535]
Length = 347
Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats.
Identities = 77/353 (21%), Positives = 146/353 (41%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R ++N ++ + + Y + Y N W+P EV M+
Sbjct: 3 ATPLDRIKILEPRNPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 62
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L+ E+ +G A+ +S I + ++++P
Sbjct: 63 GDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 118
Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ D+ +F + R P+I + + + ++
Sbjct: 119 QEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYEDF--------MRE 170
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA +L R N+M G + +I RDE H F +
Sbjct: 171 KTAETLIRSLIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHSKFISE 230
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I EN L + A LE + E + G G++ +Y+++ A
Sbjct: 231 LIRAIIGENQALQGDQLTDYVHKAFEHAIDLETQWTAEVL-DGIDGIDVDEMIRYVKYRA 289
Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L++ +N PW+ D + + +FFE R Y++
Sbjct: 290 NKMAGMLGIEKLYEGANDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNSDN 342
>gi|332292139|ref|YP_004430748.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5]
gi|332170225|gb|AEE19480.1| ATP-cone domain protein [Krokinobacter diaphorus 4H-3-7-5]
Length = 425
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 74/344 (21%), Positives = 142/344 (41%), Gaps = 20/344 (5%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
R KR N L P +Y ++ + +++W+ TE D+ +K++ +T
Sbjct: 93 RDEQAQKRKTNIFEKRINLKPYEYPQLYDYVPAIRHSYWIHTEYNFTSDIQDFKTR--IT 150
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
D ER IK + + E IY + PE A E H+ + +++
Sbjct: 151 DVERSAIKNTMLAISQIEV-AVKGFWGDIYHKMPKPEVGAVGATFAESEVRHADAYSHLL 209
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
LGL++ F + ++ P + + + + + ++E+ + + +F +
Sbjct: 210 EILGLNKE--FKLLKKKPVMMKRVQYL--------ETALKNAKSEDNKEYSESILLFSLF 259
Query: 196 FEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
E + ++ F I++ + N + GI+ + ++E +H +FGID+I IK ENP +
Sbjct: 260 IEHVSLFSQFLIIMAFNKHKNMLKGISNVVEATSKEEQIHGDFGIDIIKIIKAENPEWFD 319
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLF 313
E + M EA E G + L ++++ N+ IG+EP+F
Sbjct: 320 AEHSATVQEMCKEAFKAESNIVDWIFEAGELDFLPKALVNEFIKDRFNKSLTSIGIEPVF 379
Query: 314 KYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQGAE--LKWD 352
+ E W + I K +FF R Y + A+ + D
Sbjct: 380 EVDETLLKDAEWFDDEIIGTKHGDFFVKRSVNYTKRAQSITEDD 423
>gi|326783875|ref|YP_004324269.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7]
gi|310003887|gb|ADO98282.1| ribonucleotide reductase A subunit [Synechococcus phage S-SSM7]
Length = 388
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 72/339 (21%), Positives = 126/339 (37%), Gaps = 27/339 (7%)
Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
V+ + M V + KY + W P EV +Q D + ++S L
Sbjct: 21 VDTKSQPMFFGAPLGVQRYDEYKYPVFDKLTTQMLGYFWRPEEVSLQKDRSDYQS---LR 77
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+++ + NL + +S+ +A + + PE + F E +HS ++ YII
Sbjct: 78 PEQKHIFTSNLKYQILLDSVQGRGPGMAFAPYCALPELEGAMNVWQFMEMIHSRSYTYII 137
Query: 136 TSLGLDEGELFNMYREVPSITAKANWA-----------------LQYTQTLSSPSFTTGT 178
++ + E+F+ + I +AN + + + T
Sbjct: 138 KNVYPNPAEVFDTILDDEKILKRANSVTASYDDFINDAQEYGQGRMWEKDWKDSPSSQWT 197
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
+ L + EG+ FY FA + G M G A+ I RDE+ HL
Sbjct: 198 IHELKRKLYRAVANVNILEGIRFYVSFACSFAFGELKLMEGSAKIISLISRDENQHLVLT 257
Query: 239 IDVINQIKIENPHLWTK---EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
+++ + + E + M A E +A G +GLN Q
Sbjct: 258 QNILKNWMNGDDPEMKQIADEERNNVIGMFRNAVEEEKEWAEYLFSGGSMIGLNDKLLNQ 317
Query: 295 YMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKK 331
Y+++IAN+R +G +P++ NP PW I K
Sbjct: 318 YVEWIANKRMKALGFDPIYDQPLRNNPLPWTQHWISSKG 356
>gi|13358428|ref|NP_078636.1| Ribonucleotide reductase small subunit [Lymphocystis disease virus
1]
Length = 378
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 81/314 (25%), Positives = 123/314 (39%), Gaps = 18/314 (5%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P Y WA E N HW E+ + DD++ WK+ LT E+ I + L F
Sbjct: 71 VFKPFHYSWAVEIRALHENIHWTEKELSLADDVSDWKT-GKLTLFEKDFIIQILRLFTQL 129
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + N E R L A E H + + +LGL E E ++ +
Sbjct: 130 DVSVGHIYHNIFIPIFKNNELRNMLCSFACREGTHQQAYALLNDTLGLPETE-YSTFLNY 188
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+T K + D E L V EG+ + FA +L+
Sbjct: 189 KEMTNKTIYM------------NDMKTDNLSEIALSLI-KAVYNEGVVLFASFAMLLNFQ 235
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
R M G+ + ++ +RDE++H+ + E + T+EF R + E LE
Sbjct: 236 RFGTMKGMGKVIEWSIRDENIHVEGLCKLFKTFISEYSFILTEEFFSAVRKIQAEVLQLE 295
Query: 273 IAYAHETMPK--GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDL 329
+ GL Y+++I RR Q+GL + NP W+S +I
Sbjct: 296 TDFIILLFTNITEIKGLTKLCMINYVKYILQRRTEQLGLLESTEVLLTNPIDWISWLIAG 355
Query: 330 KKEKNFFETRVTEY 343
+ NFFE RVTEY
Sbjct: 356 RNITNFFENRVTEY 369
>gi|326560494|gb|EGE10876.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
catarrhalis 7169]
gi|326570427|gb|EGE20467.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
catarrhalis BC8]
gi|326575699|gb|EGE25622.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
catarrhalis CO72]
gi|326577166|gb|EGE27060.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
catarrhalis O35E]
Length = 376
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 74/340 (21%), Positives = 137/340 (40%), Gaps = 25/340 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + NV + M + +V++ K+ + + W P E+ + D +
Sbjct: 8 QTKNNVLLEPMFFGQPVNVSRYDQQKHPIFEQLIEKQLSFFWRPEEIDVSKDRIDFAE-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L+ E+ + NL + +S+ + + + +S PE ++ +F E +HS ++
Sbjct: 66 -LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------------SSPSFTT 176
+II ++ D ++F + I +A+ +Y L
Sbjct: 125 HIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGEGVYQIDGQSVE 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
T ++ L V V E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 185 VTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKMIARDEALHLN 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ + Q+++ + A E A+A+ G +GLN
Sbjct: 245 GTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFKDGSMIGLNRDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
QY++FI N R IGL +F+ NP PW++ +
Sbjct: 305 LCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSDN 344
>gi|190896520|gb|ACE96773.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 109/244 (44%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E +HS + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ S + V + EG++F F I L + M G
Sbjct: 63 QWALRWIDGSES--------------CAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|326560111|gb|EGE10501.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
catarrhalis 46P47B1]
gi|326564174|gb|EGE14410.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
catarrhalis 12P80B1]
gi|326573404|gb|EGE23372.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
catarrhalis 101P30B1]
Length = 376
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 74/340 (21%), Positives = 137/340 (40%), Gaps = 25/340 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + NV + M + +V++ K+ + + W P E+ + D +
Sbjct: 8 QTKNNVLLEPMFFGQPVNVSRYDQQKHPIFEQLIEKQLSFFWRPEEIDVSKDRIDFAE-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L+ E+ + NL + +S+ + + + +S PE ++ +F E +HS ++
Sbjct: 66 -LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------------SSPSFTT 176
+II ++ D ++F + I +A+ +Y L
Sbjct: 125 HIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGEGIYQIDGQSVE 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
T ++ L V V E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 185 VTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKMIARDEALHLN 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ + Q+++ + A E A+A+ G +GLN
Sbjct: 245 GTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFKDGSMIGLNRDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
QY++FI N R IGL +F+ NP PW++ +
Sbjct: 305 LCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSDN 344
>gi|326565416|gb|EGE15593.1| ribonucleotide-diphosphate reductase subunit beta [Moraxella
catarrhalis 103P14B1]
Length = 376
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 74/340 (21%), Positives = 137/340 (40%), Gaps = 25/340 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + NV + M + +V++ K+ + + W P E+ + D +
Sbjct: 8 QTKNNVLLEPMFFGQPVNVSRYDQQKHPIFEQLIEKQLSFFWRPEEIDVSKDRIDFAE-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L+ E+ + NL + +S+ + + + +S PE ++ +F E +HS ++
Sbjct: 66 -LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------------SSPSFTT 176
+II ++ D ++F + I +A+ +Y L
Sbjct: 125 HIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGEGIYQIDEQSVE 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
T ++ L V V E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 185 VTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKMIARDEALHLN 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ + Q+++ + A E A+A+ G +GLN
Sbjct: 245 GTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFKDGSMIGLNRDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
QY++FI N R IGL +F+ NP PW++ +
Sbjct: 305 LCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSDN 344
>gi|190896510|gb|ACE96768.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896556|gb|ACE96791.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896562|gb|ACE96794.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 109/244 (44%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E +HS + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ S + V + EG++F F I L + M G
Sbjct: 63 QWALRWIDGSES--------------CAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|296113118|ref|YP_003627056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Moraxella
catarrhalis RH4]
gi|295920812|gb|ADG61163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Moraxella
catarrhalis RH4]
Length = 380
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 74/340 (21%), Positives = 137/340 (40%), Gaps = 25/340 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + NV + M + +V++ K+ + + W P E+ + D +
Sbjct: 12 QTKNNVLLEPMFFGQPVNVSRYDQQKHPIFEQLIEKQLSFFWRPEEIDVSKDRIDFAE-- 69
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L+ E+ + NL + +S+ + + + +S PE ++ +F E +HS ++
Sbjct: 70 -LSTHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYT 128
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------------SSPSFTT 176
+II ++ D ++F + I +A+ +Y L
Sbjct: 129 HIIRNVVNDPSKIFEDIVDNEYILERASDIAKYYDDLHLCAKLYDLHGEGVYQIDGQSVE 188
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
T ++ L V V E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 189 VTLPKLKKQLYLCIVAVNVLEAIRFYVSFACSFAFAERKVMEGNAKIIKMIARDEALHLN 248
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ + Q+++ + A E A+A+ G +GLN
Sbjct: 249 GTQHMINLMRQGRDDPDMVAIAEACQEEAIEIFKSAAEQEKAWANYLFKDGSMIGLNRDI 308
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
QY++FI N R IGL +F+ NP PW++ +
Sbjct: 309 LCQYIEFITNTRMSAIGLPAIFETKTNPIPWINAWLSSDN 348
>gi|215275538|sp|P0C8I0|RIR2_ASFK5 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
Length = 327
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 78/330 (23%), Positives = 137/330 (41%), Gaps = 30/330 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L S + P+++ W Y + W EV M D+ W+ + +R
Sbjct: 2 EELLIEDSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D
Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E +F+ + P I A W Q+ + + + V + EG
Sbjct: 119 EKEQQRIFSGIEKHPIIRKMAQWVQQWMDPVKNSLG-------------ERLVGFAAVEG 165
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
+ F F I L N M G+ ++I RDE +H +F +I+ P +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYLNNIPE------E 219
Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+ +L EA L + K G + QY+++ + C + + ++K
Sbjct: 220 KIIHKILKEAVELVDEFISYAFDKARGSVPGFSKEMLFQYIRYFTDNLCFMLQCKSIYKV 279
Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
ENPFP M++ ++ ++ NFFE R T+YQ
Sbjct: 280 -ENPFPQMTKFFLNEVEKTNFFELRPTQYQ 308
>gi|88861512|ref|ZP_01136127.1| ribonucleotide-diphosphate reductase beta subunit
[Pseudoalteromonas tunicata D2]
gi|88816487|gb|EAR26327.1| ribonucleotide-diphosphate reductase beta subunit
[Pseudoalteromonas tunicata D2]
Length = 219
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 59/227 (25%), Positives = 111/227 (48%), Gaps = 15/227 (6%)
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
H + +++ ++G+ E E ++ + + + K ++ + ++ ++
Sbjct: 1 HVAAYSHLLDTIGMPESE-YSAFMKYKEMKDKYDYMQGF------------NVNSKEDIA 47
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ + VF EG+ + FA +L+ R NKM G+ + + +RDE+LH N I + +
Sbjct: 48 KTVAVFSAFTEGLQLFASFAILLNFPRHNKMKGMGQIVTWSVRDETLHCNSMIRIFKEFI 107
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCH 305
ENP +WT +++ E A+ G GL A + Y++FIANRR
Sbjct: 108 KENPEIWTPTLKKELYEACRIIVEHEDAFIDLAFEMGPMEGLTAQEVKDYIRFIANRRLI 167
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA-ELKW 351
Q+GLEP++ +NP W+ +++ + NFFE R TEY + + + W
Sbjct: 168 QLGLEPIYDVQKNPLTWLDTMLNAVEHMNFFEGRATEYSKASTQGTW 214
>gi|190896550|gb|ACE96788.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E +HS + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ D + F + L + EG++F F I L + M G
Sbjct: 63 QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+A + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LAFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|71280050|ref|YP_269047.1| ribonucleotide-diphosphate reductase subunit beta [Colwellia
psychrerythraea 34H]
gi|71145790|gb|AAZ26263.1| ribonucleotide reductase, beta subunit [Colwellia psychrerythraea
34H]
Length = 376
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/329 (22%), Positives = 140/329 (42%), Gaps = 27/329 (8%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M S +V++ +Y + + W P EV + D A W+S LTD E+
Sbjct: 16 EPMFLGNSVNVSRYDQQRYIAFEKLIEKQLSFFWRPEEVDVSKDRADWQS---LTDSEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ A ++ + +S PE ++ AF E +HS ++ +I+ +L
Sbjct: 73 IFISNLKYQTLLDSMAARSVNAVLLPLVSLPEVETWVETWAFSETIHSRSYTHILRNLFT 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTL-----------------SSPSFTTGTKDADQ 183
+ GE+F+ P+I +A+ ++ + + T+ +
Sbjct: 133 EPGEIFDDIIVNPAILKRASSIAKFFDDVILTTQLLQSQGEGTYEVEGKTVEVSTRKLKE 192
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ + E + FY FA + + G A+ + I RDE+LHL ++N
Sbjct: 193 RLFLAVCSVNAL-EAIRFYVSFACSFAFAERELLEGNAKIIKLIARDEALHLTGTQHILN 251
Query: 244 QIK--IENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
+ ++P + +E + + + + E +A G +GLNA QY+++
Sbjct: 252 NWRSGKDDPEMKIISEELRDEGLQIFLDVVEQEKEWAQYLFKDGSMIGLNADILNQYIEY 311
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVI 327
I+N+R IG F NP PWM+ +
Sbjct: 312 ISNQRLTAIGFGAPFDIKSNPLPWMNAYL 340
>gi|194366071|ref|YP_002028681.1| ribonucleotide-diphosphate reductase subunit beta [Stenotrophomonas
maltophilia R551-3]
gi|194348875|gb|ACF51998.1| Ribonucleoside-diphosphate reductase [Stenotrophomonas maltophilia
R551-3]
Length = 346
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 80/353 (22%), Positives = 147/353 (41%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R ++N R+ + + Y + Y N W+P EV M+
Sbjct: 2 ATPLDRIKILEPRHPNRSTGIINGRTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L E+ +G A+ +S I + ++++P
Sbjct: 62 LDARQY---GELNAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117
Query: 123 EEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ ++ +F + R P+I + + ++
Sbjct: 118 QEVIHNESYSYVLASITDLSNQNRIFEIARTHPTIIKRNAPIMGAYDDF--------MRE 169
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA ++ R N+M G + +I RDE H F +
Sbjct: 170 KTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQNRMNGTGKIISFINRDELAHTKFISE 229
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I ENP L T E A LE ++ E + G G++ +Y+++ A
Sbjct: 230 LIRAIIGENPELQTNELTAYVHQSFEHAIELETQWSSEVL-DGIDGIDVDEMVRYVKYRA 288
Query: 301 NRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L+ T+N PW+ D + + +FFE R Y++
Sbjct: 289 NKMAGMLGIERLYSDTTDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNADN 341
>gi|190896552|gb|ACE96789.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E +HS + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVHVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ D + F + L + EG++F F I L + M G
Sbjct: 63 QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|190896564|gb|ACE96795.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 167 bits (422), Expect = 3e-39, Method: Composition-based stats.
Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E +HS + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ D + F + L + EG++F F I L + M G
Sbjct: 63 QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|167957419|ref|ZP_02544493.1| ribonucleotide-diphosphate reductase subunit beta [candidate
division TM7 single-cell isolate TM7c]
Length = 277
Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 89/265 (33%), Positives = 142/265 (53%), Gaps = 3/265 (1%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
D QL P++Y WA+ Y A N W P EV + DLA +K LT+DE+ +K + +
Sbjct: 16 DGLQLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFK---KLTEDEKNALKTVISYL 72
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
+E L+ ++ IY ++ EC YL +Q +EEA H TF+YII + + E++
Sbjct: 73 NPNELLINKSLAFGIYPCVNAAECHLYLSKQMWEEANHFMTFEYIIETFPFNREEIYAAG 132
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
S+ KA + +Y + T + ++F+++L + +V EG+WFY+GF +
Sbjct: 133 WGKKSLADKAAFQTKYVTRMMEERPDVTTTEGKKDFVRNLVAYNIVLEGIWFYSGFMVGM 192
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
S R N + + ++ RDE+LHL FGI+++ I ENP L EF + R ++ +A
Sbjct: 193 SFRRRNLLRNVGTLLDWVTRDENLHLEFGINLLLTILHENPDLQDPEFADEIRNLILQAV 252
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQ 294
LE AY + +P G +GLNA Q
Sbjct: 253 ELEEAYNRDMLPNGILGLNADYVNQ 277
>gi|332993182|gb|AEF03237.1| ribonucleotide-diphosphate reductase subunit beta [Alteromonas sp.
SN2]
Length = 376
Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 72/332 (21%), Positives = 134/332 (40%), Gaps = 25/332 (7%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M +V + K+ + + W P EV + D ++ LTD E+
Sbjct: 16 EPMFFGNPVNVARYDQQKHAIFEKLIEKQISFFWRPEEVDVSRDRVDFQ---KLTDPEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + +A +S PE ++ +F E +HS ++ +I+ +L
Sbjct: 73 IFISNLKYQTLLDSVQGRSPNIAFLPIISLPELETWVETWSFFETIHSRSYTHILRNLFS 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTTGTKDADQE 184
D E+F I +A +Y L T ++
Sbjct: 133 DPSEIFEDIVVNDEIKRRAADISKYYDDLIFATQLWQTQGEGVHTVDGVPHTINMYELKK 192
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
L E + FY FA + M G ++ + I RDE+LHL+ ++N
Sbjct: 193 KLFLCMNSVNALEAIRFYVSFACTFAFAERKLMEGNSKIIRLIARDENLHLSSTQHILNL 252
Query: 245 I--KIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
++P + ++ ++++R + A E +A G +GLN Y+++I
Sbjct: 253 WARSKDDPEMAQIAQDCKEEARAIFMNAVEQEKEWADYLFKTGSMIGLNKEILCSYVEYI 312
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
AN+R IGL+ F+ + NP PWM+ ++
Sbjct: 313 ANQRMTAIGLDAPFEISSNPLPWMNNYLNSDN 344
>gi|326784480|ref|YP_004325029.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7]
gi|310004513|gb|ADO98905.1| ribonucleotide reductase A subunit [Prochlorococcus phage P-SSM7]
Length = 388
Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 80/358 (22%), Positives = 141/358 (39%), Gaps = 30/358 (8%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+G++ + V+ + M V + ++ W P EV
Sbjct: 7 KEVSGMT-VFN-RNVVDTTKQFMFFGAPLSVQRYDSYRFPTFDRLTQQQLGYFWRPEEVS 64
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+Q D A + LTD ++ + NL + +S+ +A + S PE +
Sbjct: 65 LQKDRADYAQ---LTDQQKHIFTSNLKYQIMLDSVQGRAPGMAFIPYCSLPELEGCMQVW 121
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ---------------- 164
F E +HS ++ YII ++ D ELF+ +I ++A +
Sbjct: 122 QFMEMIHSRSYTYIIKNVYSDPSELFDTILTDDNILSRAESVTKSYDDFINYAHEYDQSN 181
Query: 165 -YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + S + T+ +++L + EG+ FY FA + G M G A+
Sbjct: 182 AWKEDMRSHPNSEWTRRDLKKYLYKAVANVNILEGIRFYVSFACSFAFGENKLMEGSAKI 241
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAHET 279
I RDES HL ++ KE ++ + M E A+A+
Sbjct: 242 LSLIARDESQHLVLTQQILKNWTEGKDDPEMKEIAEEEQETVEQMFKACVDEEKAWANYL 301
Query: 280 MPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKN 334
+G +GLN Y+++IANRR IGL+P++ NP PW ++ K ++N
Sbjct: 302 FKEGSMIGLNERLLHNYVEWIANRRMKAIGLKPIYDQPLRNNPLPWTEHWLNSKGQQN 359
>gi|88801048|ref|ZP_01116596.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp.
MED297]
gi|88776187|gb|EAR07414.1| ribonucleotide-diphosphate reductase beta subunit [Reinekea sp.
MED297]
Length = 369
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 76/330 (23%), Positives = 141/330 (42%), Gaps = 18/330 (5%)
Query: 14 EKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ N + M + +V + +Y + + W P EV +Q D +
Sbjct: 8 QKKFNAFAEPMFFGEQVNVARYDQQRYPIFEQLIEKQLSFFWRPEEVDLQRDRKDF---I 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L ++E+ + NL + +S+ + +A +S PE ++ AF E VHS ++
Sbjct: 65 ALPENEKHIFLSNLKYQTLLDSVQGRSPNVAFLPIVSLPELETWIETWAFSETVHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQ---------TLSSPSFTTGTKDADQ 183
+II ++ + ++F P I +A Y LSS + +
Sbjct: 125 HIIRNIVTEPDQIFEDIVTTPEIIERAESISGYYDQLIAGVQKYHLSSETDRESQLHELK 184
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
L V V E + FY FA + +M G A+ + I RDE+LHL+ ++
Sbjct: 185 RLLLLTMVSVNVLEAIRFYVSFACSFAFAEGARMEGNAKLIKLIARDEALHLSGTEFILR 244
Query: 244 QIKI--ENPHLWTKEFQQK--SRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
Q ++P + +++ R + +A E A+A+ G +GLNA QY+++
Sbjct: 245 QWLHGGDDPQMQIVADEEQATIRQIFEDAAEQEKAWANYLFNDGSMIGLNAEILHQYIEY 304
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVID 328
+ ++R + L P++ +NP PWM +
Sbjct: 305 LTDQRLDALSLSPIYGRRDNPLPWMDNWVS 334
>gi|154508355|ref|ZP_02043997.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC
17982]
gi|153797989|gb|EDN80409.1| hypothetical protein ACTODO_00852 [Actinomyces odontolyticus ATCC
17982]
Length = 425
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 69/354 (19%), Positives = 131/354 (37%), Gaps = 35/354 (9%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P + + + + + N++ K W+ N W+P ++P+ +DL W
Sbjct: 96 PSDTAHRGAPMATEPVF-EAINWNKIQDDKDLEVWD---RLTGNFWLPEKIPLSNDLPSW 151
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K+ LT DE+LM R ++L +++ P AF E+VH+
Sbjct: 152 KT---LTKDEQLMTNRVFTGLTLLDTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHA 208
Query: 129 HTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
++ I ++L E E F E ++ KA Y
Sbjct: 209 KSYSSIFSTLLSTEEINESFRWSNENEALQKKAEIVKSYYDGND---------------P 253
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ V + E FY+GF + K+ A+ + I+RDE++H +
Sbjct: 254 EKRKVASTMLESFLFYSGFYAPMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAV 313
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E+ + + + ++L+E E Y + +GL ++++++ AN+
Sbjct: 314 NESSQERQDDLRDYTYSLLYELYENEEQYTEDLY--DPLGLT-EDVKKFLRYNANKALMN 370
Query: 307 IGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+G E LF NP + + + +FF + Y G + WD
Sbjct: 371 LGYEALFPADATDVNPAILAALSPNADENHDFFSGSGSSYVMGEVVDTEDEDWD 424
>gi|190896538|gb|ACE96782.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896548|gb|ACE96787.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896558|gb|ACE96792.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats.
Identities = 62/244 (25%), Positives = 111/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E +HS + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ D + F + L + EG++F F I L + M G
Sbjct: 63 QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|190574752|ref|YP_001972597.1| ribonucleotide-diphosphate reductase subunit beta [Stenotrophomonas
maltophilia K279a]
gi|190012674|emb|CAQ46302.1| putative ribonucleoside-diphosphate reductase beta chain
[Stenotrophomonas maltophilia K279a]
Length = 346
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 79/353 (22%), Positives = 147/353 (41%), Gaps = 19/353 (5%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
T L I+ E R ++N ++ + + Y + Y N W+P EV M+
Sbjct: 2 ATPLDRIKILEPRHPNRSTGIINGQTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMK 61
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L E+ +G A+ +S I + ++++P
Sbjct: 62 LDARQY---GELNAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQ 117
Query: 123 EEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
+E +H+ ++ Y++ S+ ++ +F + R P+I + + ++
Sbjct: 118 QEVIHNESYSYVLASITDLPNQNRIFEIARTHPTIIKRNAPIMGAYDDF--------MRE 169
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E L + + EG+ FY+GFA ++ R N+M G + +I RDE H F +
Sbjct: 170 KTAETLLKSLIQSSILEGINFYSGFAYFYNMVRQNRMNGTGKIISFINRDELAHTKFISE 229
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+I I ENP L T E A LE ++ E + G G++ +Y+++ A
Sbjct: 230 LIRAIIGENPELQTNELTAYVHQSFEHAIELETQWSSEVL-DGIDGIDVDEMVRYVKYRA 288
Query: 301 NRRCHQIGLEPLF-KYTENPFPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
N+ +G+E L+ T+N PW+ D + + +FFE R Y++
Sbjct: 289 NKMAGMLGIERLYSDTTDNVMPWIKAYADNFTETKTDFFEMRNASYKKTNVDN 341
>gi|221105497|ref|XP_002169241.1| PREDICTED: similar to ribonucleoside-diphosphate reductase small
chain [Hydra magnipapillata]
Length = 363
Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats.
Identities = 75/347 (21%), Positives = 141/347 (40%), Gaps = 35/347 (10%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPL--KYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
A +++ ++ +LN + P+ K+ W+ Y + +W E+ +D
Sbjct: 26 EYDANDEKKKDSEEEILNKDLSRLVVKPINSKHKVIWDLYKKQKDAYWTAEEIDFSNDRH 85
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ + + + IKR L FFA ++S+V NI + + E Q E
Sbjct: 86 DFLKVDK---NIQHFIKRILAFFAGADSIVNINIKKKLSKITVK-EAEIAYGFQQMMEDT 141
Query: 127 HSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
HS + ++ + D EL N ++ V SI WA ++ + ++
Sbjct: 142 HSEVYADMLIKIITDPVERDELINAFKTVASIKRMIQWAQRWINSKRRIGYS-------- 193
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGR---ANKMVGIAEQYQYIMRDESLHLNFGID 240
V + +FEG+ F FA I L + + M G+ + I +DE +H FG
Sbjct: 194 ------IVVFCIFEGLMFSGAFAGIYWLKKILGEDIMKGLIQSNNLIAKDEGMHTIFGCV 247
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+ I ++ ++ EA + ++ + + +G+N Y++++A
Sbjct: 248 IYTFIIYRLSF-------EEICELMKEAVEICKSFTKDAICVDMIGMNVELMYNYIEYVA 300
Query: 301 NRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
+R +G E +F + F +M I + NFFE R TEYQ+
Sbjct: 301 DRLMVYLGYEKIFMTKIPDQFQFMD-TIGFLNKDNFFERRATEYQKA 346
>gi|294945135|ref|XP_002784568.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239897674|gb|EER16364.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 238
Score = 166 bits (419), Expect = 6e-39, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 25/230 (10%)
Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
E +HS T+ +I + D E +F VPS+ KA WAL +
Sbjct: 1 MENIHSETYSLLIDNYIKDPAEKDKIFRAIETVPSVRKKAEWALSWIN------------ 48
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
D F + L + EG+ F F I L + M G+ + I RDE LH +F
Sbjct: 49 -DDNCFSERLIA-FACVEGILFSGSFCAIYWLKKRGLMPGLTFSNELISRDEGLHADFAC 106
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+ N + +T+ ++ ++ A +E + E++P +G+N+ +Y++F+
Sbjct: 107 LLYNMM------HYTRLPDERVHEIVRGAVDVERVFISESLPVSLIGMNSQLMCRYIEFV 160
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
A+R +G L+ T NPF WM ++I L+ + NFFE RV EYQ+G +
Sbjct: 161 ADRLLVALGHPKLYNAT-NPFDWM-KMISLQGKTNFFEKRVGEYQKGGVM 208
>gi|71276518|ref|ZP_00652793.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon]
gi|71900741|ref|ZP_00682863.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
gi|170729741|ref|YP_001775174.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
fastidiosa M12]
gi|71162695|gb|EAO12422.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Dixon]
gi|71729511|gb|EAO31620.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
gi|167964534|gb|ACA11544.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M12]
Length = 349
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 76/333 (22%), Positives = 142/333 (42%), Gaps = 19/333 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N ++ + + Y + Y N W+P EV M+ D + L+ E+
Sbjct: 25 IINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---GELSAREKNAY 81
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
+G A+ +S I + ++++P +E +H+ ++ Y++ S+
Sbjct: 82 DAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLA 140
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F + R P+I + +Q ++ E L + + EG+
Sbjct: 141 NQNRVFEIARTHPTILKRNAPIMQAYDDF--------MREKTAETLLYSLIQSSILEGIN 192
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R N+M G + +I RDE H F +VI I ENP L T
Sbjct: 193 FYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDALTDY 252
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
A LE + E + G G++ +Y+++ AN+ +G+E L+ + T+N
Sbjct: 253 VHQAFAHAIELETQWTGEVL-NGIDGIDVEEMIRYVKYRANKMAGMLGIETLYTETTDNV 311
Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
PW+ D + + +FFE R Y++
Sbjct: 312 MPWIRAYADNFTETKTDFFEMRNASYKKTNVDN 344
>gi|190896508|gb|ACE96767.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896514|gb|ACE96770.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896522|gb|ACE96774.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896540|gb|ACE96783.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896542|gb|ACE96784.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E + S + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ S + V + EG++F F I L + M G
Sbjct: 63 QWALRWIDGSES--------------CAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|86140897|ref|ZP_01059456.1| ribonucleoside-diphosphate reductase, beta subunit 1
[Leeuwenhoekiella blandensis MED217]
gi|85832839|gb|EAQ51288.1| ribonucleoside-diphosphate reductase, beta subunit 1
[Leeuwenhoekiella blandensis MED217]
Length = 427
Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats.
Identities = 76/338 (22%), Positives = 141/338 (41%), Gaps = 22/338 (6%)
Query: 20 DDKRMLNARSDVN----QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+KR L ++++ L P +Y E + +++W+ TE D+ +K+ GL+
Sbjct: 95 RNKRALERKTNIFEKRINLKPYEYPELNEYVAAIRHSYWIHTEFNFTSDIQDFKT--GLS 152
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+ ER IK + + E ++ L PE A E H + +++
Sbjct: 153 EVERSAIKNTMLAISQIEV-AVKTFWGDVHHRLPKPEIAAVGATFAESEVRHHDAYSHLL 211
Query: 136 TSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
LGL+ E F ++ P I + ++ S D D+E+ + + +F +
Sbjct: 212 EILGLN--EEFKELKKKPVIMKRVHY--------LETSLKHAKSDDDREYTESILLFALF 261
Query: 196 FEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
E + ++ F I++ + N + GI+ + ++E +H +FG+D+IN IK ENP +
Sbjct: 262 IEHVSLFSQFLIIMAFNKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKENPEWFD 321
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLF 313
+E + M + E KG + L ++++ N+ IGLE LF
Sbjct: 322 EEHNNLIKEMCLNSFEAESKVVDWIFEKGELDFLPKAVINEFLKNRFNKSLEAIGLEKLF 381
Query: 314 KYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
E W + I K +FF R Y + +
Sbjct: 382 DIDEALLQETEWFDDEIIGTKHGDFFVKRSINYSKRTQ 419
>gi|15837799|ref|NP_298487.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
fastidiosa 9a5c]
gi|28198393|ref|NP_778707.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
fastidiosa Temecula1]
gi|9106169|gb|AAF84007.1|AE003954_4 ribonucleoside-diphosphate reductase beta chain [Xylella fastidiosa
9a5c]
gi|28056463|gb|AAO28356.1| ribonucleoside-diphosphate reductase beta chain [Xylella fastidiosa
Temecula1]
Length = 346
Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats.
Identities = 75/333 (22%), Positives = 142/333 (42%), Gaps = 19/333 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N ++ + + Y + Y N W+P EV M+ D + L+ E+
Sbjct: 22 IINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---GELSAREKNAY 78
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
+G A+ +S I + ++++P +E +H+ ++ Y++ S+
Sbjct: 79 DAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLA 137
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F + R P+I + +Q ++ E L + + EG+
Sbjct: 138 NQNRVFEIARTHPTILKRNAPIMQAYDDF--------MREKTAETLLYSLIQSSILEGIN 189
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R N+M G + +I RDE H F +VI I ENP L T
Sbjct: 190 FYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDALTDY 249
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
A LE + E + G G++ +Y+++ AN+ +G++ L+ + T+N
Sbjct: 250 VHQAFAHAIELETQWTGEVL-DGIDGIDVEEMIRYVKYRANKMAGMLGIQTLYTETTDNV 308
Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
PW+ D + + +FFE R Y++
Sbjct: 309 MPWIRAYADNFTETKTDFFEMRNASYKKTNVDN 341
>gi|109898789|ref|YP_662044.1| ribonucleotide-diphosphate reductase subunit beta
[Pseudoalteromonas atlantica T6c]
gi|109701070|gb|ABG40990.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Pseudoalteromonas atlantica T6c]
Length = 376
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ + M +V + K+ + + W P EV + D ++ L++
Sbjct: 12 DPLQEPMFFGNPVNVARYDQQKHSIFEKLIEKQISFFWRPEEVDVSKDRVDFQ---KLSE 68
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + NL + +S+ + +A +S PE + +F E +HS ++ +I+
Sbjct: 69 SEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPELETWTETWSFFETIHSRSYTHILR 128
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLS---------SPSFTTGTKDADQEFLQ 187
+L D +F+ E I +A +Y L T + ++
Sbjct: 129 NLFGDPSSIFSDIVENEQIKKRAADISKYYDDLIFYTQLWQTLGEGTHTINGEEHVVTMR 188
Query: 188 DL-------FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
L E + FY FA + M G ++ + I RDE+LHL
Sbjct: 189 TLKIKLFLCMNSVNALEAIRFYVSFACTFAFAERELMEGNSKIIRLISRDENLHLTSTQH 248
Query: 241 VINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
++N E +++++ + +A E +A G +GLN QY
Sbjct: 249 ILNLWAKGKDDPEMAEIALEYKEEATNIFLDAVNQEKEWAEYLFQNGSMIGLNKDILCQY 308
Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
++FIAN R IGL+ F NP PWM+ ++
Sbjct: 309 VEFIANHRMSAIGLDQPFDIKNNPLPWMNNYLNSDN 344
>gi|190896546|gb|ACE96786.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E + S + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ S + V + EG++F F I L + M G
Sbjct: 63 QWALRWMDGSES--------------CAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|190896516|gb|ACE96771.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E + S + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAIETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ D + F + L + EG++F F I L + M G
Sbjct: 63 QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|161617990|ref|YP_001595470.1| ribonucleotide reductase beta subunit [Enterobacteria phage
phiEcoM-GJ1]
gi|150416409|gb|ABR68787.1| ribonucleotide reductase beta subunit [Enterobacteria phage
phiEcoM-GJ1]
Length = 372
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 73/336 (21%), Positives = 134/336 (39%), Gaps = 23/336 (6%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M +V + KYG + + W P EV + D ++
Sbjct: 8 QTKNNQLLEPMFFGQNVNVARYDQQKYGIFEKLIEKQLSFFWRPEEVDVSQDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L +E+ + NL + +S+ + +S PE ++ +F E +HS ++
Sbjct: 65 KLPANEQHIFTSNLRYQILLDSIQGRGPNTVLLPIVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-------------SSPSFTTGTK 179
+II ++ D +F+ I A+A QY L S +
Sbjct: 125 HIIRNIVTDPSIIFDEIVTNEHIKARAIGISQYYDELQQLTALWQLFGEGSHAGHEISLR 184
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 ELKKKLYLCLMSINAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLTGTQ 243
Query: 240 DVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
++N ++P + E +Q+ + + +A E +A G +GLN
Sbjct: 244 HMLNLLASGKDDPEMGEIAAECRQECQKLFEDAAQQEKDWADYLFKDGSMIGLNKQILCG 303
Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
Y+++I N R +GL+ FK NP PW++ ++
Sbjct: 304 YVEYITNIRMQAVGLDAPFKGATNPIPWINAWLNSD 339
>gi|190896532|gb|ACE96779.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896554|gb|ACE96790.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E + S + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ D + F + L + EG++F F I L + M G
Sbjct: 63 QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYNVA-NPFDGM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|157375444|ref|YP_001474044.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
sediminis HAW-EB3]
gi|157317818|gb|ABV36916.1| Ribonucleoside-diphosphate reductase [Shewanella sediminis HAW-EB3]
Length = 376
Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 75/328 (22%), Positives = 137/328 (41%), Gaps = 25/328 (7%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M S +V++ K+ + + W P E+ + D A W+ LT+ E+
Sbjct: 16 EPMFLGNSVNVSRYDQQKHVSFEKLIEKQLSFFWRPEEIDISKDRADWQ---RLTESEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ A ++ + +S PE ++ AF E +HS ++ +I+ +L
Sbjct: 73 IFISNLKYQTLLDSMAARSVNAVLLPLVSLPEVETWVETWAFSETIHSRSYTHILRNLFT 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS------------SPSFTTGTKDADQEFLQD 188
+ GE+F+ P+I +A +Y + S T + L++
Sbjct: 133 EPGEVFDDIVVNPAILKRATSIAKYFDDVILTTQLLQSQGEGSYEVNGETIEVSARKLKE 192
Query: 189 LFVFYVV----FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V E + FY FA + + G A+ + I RDE+LHL+ ++
Sbjct: 193 RLYLAVCSVNALEAIRFYVSFACSFAFAERELLEGNAKIIKLIARDEALHLSGTQHILKL 252
Query: 245 IKIENPHLW----TKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
N +E ++ R + + E +A G +GLNA +QY+++I
Sbjct: 253 WANGNDDPEMVEVCQELREAGRQVFLDVVEQEKEWADYLFKDGSMIGLNAEILKQYIEYI 312
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+N R IG E F NP PW++ +
Sbjct: 313 SNNRMEAIGYEAPFAIKNNPLPWINTYL 340
>gi|132618|sp|P26713|RIR2_ASFM2 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
Length = 327
Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 76/330 (23%), Positives = 135/330 (40%), Gaps = 30/330 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L S + P+++ W Y + W EV M D+ W+ + +R
Sbjct: 2 EELLIENSQRFTIFPIQHPECWNWYKKLESMTWTAQEVDMCKDIDDWE---AMPKPQREF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D
Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E +F+ + P I A W Q+ + + V + EG
Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWMDPARNSLG-------------ERLVGFAAVEG 165
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
+ F F I L N M G+ ++I RDE +H +F +I+ P +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------E 219
Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+ +L EA L + + K G + QY+++ + C + + ++
Sbjct: 220 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYNV 279
Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
NPFP M++ ++ ++ NFFE R T+YQ
Sbjct: 280 G-NPFPQMTKFFLNEVEKTNFFELRPTQYQ 308
>gi|71901120|ref|ZP_00683227.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
gi|182681036|ref|YP_001829196.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
fastidiosa M23]
gi|71729125|gb|EAO31249.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa Ann-1]
gi|182631146|gb|ACB91922.1| Ribonucleoside-diphosphate reductase [Xylella fastidiosa M23]
gi|307579504|gb|ADN63473.1| ribonucleotide-diphosphate reductase subunit beta [Xylella
fastidiosa subsp. fastidiosa GB514]
Length = 349
Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 75/333 (22%), Positives = 142/333 (42%), Gaps = 19/333 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N ++ + + Y + Y N W+P EV M+ D + L+ E+
Sbjct: 25 IINGKTSGILNWNDIPYPSFYRAYKELSTNFWIPDEVDMKIDKRQY---GELSAREKNAY 81
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL-- 140
+G A+ +S I + ++++P +E +H+ ++ Y++ S+
Sbjct: 82 DAIIGLLATLDSPQTRFIY-NVAEYITDPAAHANAAIIGQQEVIHNESYSYVLASITDLA 140
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F + R P+I + +Q ++ E L + + EG+
Sbjct: 141 NQNRVFEIARTHPTILKRNAPIMQAYDDF--------MREKTAETLLYSLIQSSILEGIN 192
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R N+M G + +I RDE H F +VI I ENP L T
Sbjct: 193 FYSGFAYFYNLVRQNRMTGTGKIISFINRDELAHTKFISEVIRAIVGENPELQTDALTDY 252
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENP 319
A LE + E + G G++ +Y+++ AN+ +G++ L+ + T+N
Sbjct: 253 VHQAFAHAIELETQWTGEVL-DGIDGIDVEEMIRYVKYRANKMAGMLGIQTLYTETTDNV 311
Query: 320 FPWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
PW+ D + + +FFE R Y++
Sbjct: 312 MPWIRAYADNFTETKTDFFEMRNASYKKTNVDN 344
>gi|163786628|ref|ZP_02181076.1| ribonucleoside-diphosphate reductase , beta subunit 1
[Flavobacteriales bacterium ALC-1]
gi|159878488|gb|EDP72544.1| ribonucleoside-diphosphate reductase , beta subunit 1
[Flavobacteriales bacterium ALC-1]
Length = 429
Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 65/323 (20%), Positives = 131/323 (40%), Gaps = 18/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
L P +Y + + +++W+ +E D+ +K++ LT E+ IK + +
Sbjct: 112 RINLKPYEYPALNDYVDAIRHSYWIHSEFNFTSDIQDFKTR--LTVVEQNAIKNTMLAIS 169
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E + IY + PE A E H + +++ LGL+ F +
Sbjct: 170 QIEV-AVKSFWGEIYNKMPKPEIGAVGATFAESEVRHHDAYSHLLEILGLNNE--FKHLK 226
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ P I + ++ + + ++E+ + + +F + E + ++ F I++
Sbjct: 227 KKPVIMKRVHYL--------ETALKNAKSEDNKEYAESILLFSLFIEHVSLFSQFLIIMA 278
Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N + G++ + ++E++H +FGID+I IK ENP + E + R + EA
Sbjct: 279 FNKHKNMLKGVSNVVEATSKEENIHGDFGIDIIKIIKAENPTWFDAEHNEIVRELCREAF 338
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
E G + L ++++ N IG+E +F E W +
Sbjct: 339 ASESELVDWIFEAGELEFLPKDVINEFLKNRFNNSLESIGIEKVFDVDETLLTQTEWFDD 398
Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
I K +FF R Y + +
Sbjct: 399 EIIGTKHGDFFVKRSINYSKRTK 421
>gi|253574542|ref|ZP_04851883.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
sp. oral taxon 786 str. D14]
gi|251846247|gb|EES74254.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
sp. oral taxon 786 str. D14]
Length = 343
Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 81/351 (23%), Positives = 152/351 (43%), Gaps = 22/351 (6%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
L I E N + + S + ++ ++ Y NHW+ E+PM D
Sbjct: 3 LQTIFNTEAP-NKSTRIIGGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMAKDAQ 61
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L +E+ K N+ A +S+ V + R+ ++ +E V
Sbjct: 62 QF---ALLDPEEQRTFKINISLLAVLDSMQT-MFVGDVKRYFTDSSLEAISAIIGQQEVV 117
Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ Y+++S+ ++ E+F ++ P + + + Q + +
Sbjct: 118 HNQSYSYVLSSIVSEQEQKEIFEYWKHDPVLLDRNKFIANIYQNFRD--------EPTPQ 169
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ V ++ EG++FY+ FA +L R KM+G ++ YI RDE+ H F +V Q
Sbjct: 170 SFFEALVADLILEGIFFYSTFAFFYNLARDQKMMGTSQMISYIQRDENQHCYFFAEVFKQ 229
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ I+ P L TKE + + A LE +AH T+ K G++ Y+++IAN+R
Sbjct: 230 LLIDYPELNTKENIDYAYRTIDRAVELETNWAHYTL-KNVPGIDLNELSDYIKYIANKRL 288
Query: 305 HQIGLEPLF-KYTENPFPWM----SEVIDLKKEKNFFETRVTEYQQGAELK 350
+GLE + N PW+ E ++ + +FFE + Y + +
Sbjct: 289 TLMGLEKAYAGVDINCMPWIKPFSDEALNA-TKTDFFEAKSRNYGKVGDDN 338
>gi|329922162|ref|ZP_08277907.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
sp. HGF5]
gi|328942352|gb|EGG38619.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
sp. HGF5]
Length = 370
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 78/350 (22%), Positives = 147/350 (42%), Gaps = 20/350 (5%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+ I E N + + S + ++ ++ Y NHW+ E+PM D
Sbjct: 30 MQKIFNTEAP-NRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQ 88
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L +E+ K N+ A +S+ V + R+ ++ +E V
Sbjct: 89 QF---PRLDPEEQRTFKINISLLAVLDSMQT-MFVGDVKRYFTDSSLEAISAIIGQQEVV 144
Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ Y+++S+ ++ E+F ++ P + + + Q + +
Sbjct: 145 HNQSYSYVLSSIVSEQEQKEIFEYWKHDPVLLERNQFISNIYQNFRD--------NPSPQ 196
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ V ++ EG++FY+ FA +L R KM+ ++ YI RDE+ H F +V Q
Sbjct: 197 SFFEAMVADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQ 256
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ + P L TKE + A LE +AH T+ G++ Y+++IANRR
Sbjct: 257 LLKDFPELNTKENIDYLYRTIDRAVELETNWAHYTLSN-VRGIDLNELSDYIKYIANRRI 315
Query: 305 HQIGLEPLFK-YTENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAELK 350
+GLE ++ N PW S+ + +FFE + Y + +
Sbjct: 316 TMMGLEKAYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGDDN 365
>gi|308049658|ref|YP_003913224.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Ferrimonas balearica DSM 9799]
gi|307631848|gb|ADN76150.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Ferrimonas balearica DSM 9799]
Length = 378
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 82/336 (24%), Positives = 133/336 (39%), Gaps = 25/336 (7%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ + M +V + K+ + + W P EV + D + N L D
Sbjct: 14 DALKEPMFLGNPVNVARYDQQKHRIFEDLIEKQLSFFWRPEEVDVTQDRIDY---NALPD 70
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II
Sbjct: 71 HEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFYETIHSRSYTHIIR 130
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTTGTKD 180
++ D G +F+ I +A+ QY L + + T T
Sbjct: 131 NIVNDPGVVFDDIVVNEEIQKRASDISQYYDDLIHTTQLYQQFGEGTHDINGNKVTLTLR 190
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
++ L + V E + FY FA + M G A+ ++I RDE LHL
Sbjct: 191 GLKKKLYLCLMSVNVLEAVRFYVSFACSFAFAERKLMEGNAKIIRFIARDEQLHLVGTQH 250
Query: 241 VINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
+IN + E +S + A E A+A G +GLN E Y
Sbjct: 251 MINLMADGRDDPEMAEIAIECHSESIEIFRRAAEQEKAWASYLFKDGSMLGLNKQIIEDY 310
Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
++FI N R IGL PLF NP PWMS ++
Sbjct: 311 VEFITNERMAGIGLPPLFDKRSNPLPWMSTWLESDT 346
>gi|162849254|emb|CAN10143.1| Ribonucleotide reductase small subunit [African swine fever virus
Benin 97/1]
Length = 327
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 80/330 (24%), Positives = 139/330 (42%), Gaps = 30/330 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L S + P+++ W Y + W EV M D+ W+ + +R
Sbjct: 2 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D
Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E +F+ + P I A W Q+ D D+ L + V + EG
Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEG 165
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
+ F F I L N M G+ ++I RDE +H +F +I+ P +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------E 219
Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+ +L EA L + + K G + QY+++ + C + + ++K
Sbjct: 220 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 279
Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
NPFP M++ ++ ++ NFFE R T+YQ
Sbjct: 280 G-NPFPQMTKFFLNEVEKTNFFELRPTQYQ 308
>gi|149369595|ref|ZP_01889447.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified
eubacterium SCB49]
gi|149357022|gb|EDM45577.1| ribonucleoside-diphosphate reductase, beta subunit [unidentified
eubacterium SCB49]
Length = 424
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 65/340 (19%), Positives = 146/340 (42%), Gaps = 26/340 (7%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E++ ++ ++R+ L P +Y +E + +++W+ TE D+ +K++
Sbjct: 98 ERKTDIFERRI--------SLKPYEYPQLYEYVPAIRHSYWIHTEFNFTSDIQDFKTR-- 147
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L + ER IK + + E + ++ + PE A E H+ + +
Sbjct: 148 LNEVERSAIKNTMLAISQIEV-AVKSFWGDLHLRMPKPEIGAVGSTFAESEVRHADAYSH 206
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
++ LGL++ F ++ P I + + + D ++E+ + + +F
Sbjct: 207 LLEILGLNKE--FKALKKKPVIMKRVQYL--------ESALRNSKSDDNEEYAEAVLLFS 256
Query: 194 VVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
+ E + ++ F I++ + N + G++ + ++E +H +FGID+I +K E+P
Sbjct: 257 LFIEHVSLFSQFLIIMAFNKHKNMLKGVSNVVEATSKEEQIHGDFGIDLILILKDEHPEW 316
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEP 311
+T E+ + + + +A E+ +G + L ++++ N+ IG+E
Sbjct: 317 FTPEYHENIKRLCLDAYEAEVDLVDWIFEEGELDFLPKTVINEFLKNRFNKSLESIGVEK 376
Query: 312 LFKYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+F E W + I K +FF R Y + +
Sbjct: 377 VFDVDEALVIQTEWFDDEIIGTKHGDFFVKRSVNYSKRTQ 416
>gi|282598964|ref|YP_003358881.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Deftia phage phiW-14]
gi|257219034|gb|ACV50049.1| bifunctional gluaredoxin/ribonucleoside-diphosphate reductase
subunit beta [Deftia phage phiW-14]
Length = 346
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 68/320 (21%), Positives = 127/320 (39%), Gaps = 9/320 (2%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P Y ++ + HW+ E + DD+ W++++ +DDER IK L F
Sbjct: 16 TYKPFLYQEFYDLMTKHEDAHWVKQEAELGDDVNDWRNRS--SDDERSFIKEILTVFTQG 73
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ +VA+N N E +L+ A E +H + + GL + +F +RE
Sbjct: 74 DVVVADNYKSIFIPAFKNNEVSNWLVGVAAREVIHQDAYAMANETFGLPDS-MFGRFREY 132
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ + + G L + + + F G
Sbjct: 133 QEMRERNDLMATQYDPSMVEGLAMGLVHTTFNEGVCLMGAFA---NLLQFNRFDVPGFNG 189
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
+ G+ + ++ +RDE +H+ + ++ E+P L T E +++ + E
Sbjct: 190 YRGRYKGLTKINKWSLRDEGIHVEGSSLLYRKVMGEHPWLMTDEHKKQVYDLARAVVAAE 249
Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ K + + + Y++++ NRR Q+G + +F+ P PW+ E++
Sbjct: 250 DLFLDLAFKKYQLTMTKDESKAYVRYMMNRRLLQLGHKAIFEVQGIPCPWIEEILGGAGG 309
Query: 333 K---NFFETRVTEYQQGAEL 349
K NFFETRV YQ L
Sbjct: 310 KRDSNFFETRVDNYQASGAL 329
>gi|326796346|ref|YP_004314166.1| ribonucleoside-diphosphate reductase [Marinomonas mediterranea
MMB-1]
gi|326547110|gb|ADZ92330.1| Ribonucleoside-diphosphate reductase [Marinomonas mediterranea
MMB-1]
Length = 377
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 74/330 (22%), Positives = 134/330 (40%), Gaps = 26/330 (7%)
Query: 21 DKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ M L +V + K+ + + W P EV + D + L + E+
Sbjct: 15 KEPMFLGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSSDRKDF---LNLAEHEQ 71
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
+ NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II ++
Sbjct: 72 HIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIV 131
Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT---------KDADQEFLQDLF 190
D +F+ IT +A+ +Y L T + +
Sbjct: 132 NDPTVIFDDIIVNEEITKRADSVSRYYDDLIEKVNLYNTLGLGVHNVPGKGEVDVSMKAL 191
Query: 191 VFYVVF--------EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
+ E + FY FA + M G A+ + I RDE+LHL ++
Sbjct: 192 KKALYVTLASVNVLEAIRFYVSFACSFAFAERTLMEGNAKIIKLIARDEALHLTGTQHML 251
Query: 243 N--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQ 297
N ++P + +E +Q+ + EA E +A G +GLNA QY++
Sbjct: 252 NLMTSGKDDPEMAIIAQECRQEITDIFIEAAQQEKEWAKYLFKDGSMIGLNAEILGQYVE 311
Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+I+N R +GLEP F+ NP PW++ +
Sbjct: 312 YISNVRMQAVGLEPAFETKSNPIPWINAWL 341
>gi|9628152|ref|NP_042738.1| ribonucleotide reductase small subunit [African swine fever virus]
gi|1172939|sp|P42492|RIR2_ASFB7 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|780414|gb|AAA65274.1| ribonucleotide reductase small subunit [African swine fever virus]
gi|1097433|prf||2113434AT ribonucleotide reductase:SUBUNIT=small
Length = 334
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 80/330 (24%), Positives = 139/330 (42%), Gaps = 30/330 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L S + P+++ W Y + W EV M D+ W+ + +R
Sbjct: 9 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 65
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D
Sbjct: 66 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 125
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E +F+ + P I A W Q+ D D+ L + V + EG
Sbjct: 126 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEG 172
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
+ F F I L N M G+ ++I RDE +H +F +I+ P +
Sbjct: 173 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------E 226
Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+ +L EA L + + K G + QY+++ + C + + ++K
Sbjct: 227 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 286
Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
NPFP M++ ++ ++ NFFE R T+YQ
Sbjct: 287 G-NPFPQMTKFFLNEVEKTNFFELRPTQYQ 315
>gi|215275540|sp|P0C8I2|RIR2_ASFWA RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
Length = 327
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 77/330 (23%), Positives = 135/330 (40%), Gaps = 30/330 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L S + P+++ W Y + W EV M D+ W+ + +R
Sbjct: 2 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D
Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E +F+ + P I A W Q+ + + V + EG
Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWMDPTKNSLG-------------ERLVGFAAVEG 165
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
+ F F I L N M G+ ++I RDE +H +F +I+ P +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------E 219
Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+ +L EA L + K G + QY+++ + C + + ++K
Sbjct: 220 KIIHKILKEAVELVDEFISYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 279
Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
NPFP M++ ++ ++ NFFE R T+YQ
Sbjct: 280 G-NPFPQMTKFFLNEVEKTNFFELRPTQYQ 308
>gi|190896518|gb|ACE96772.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E + S + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ S + V + EG++F F I L + M G
Sbjct: 63 QWALRWIDGSES--------------CAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYYVA-NPFDGM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|308806626|ref|XP_003080624.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
tauri]
gi|116059085|emb|CAL54792.1| putative ribonucleotide reductase small subunit (ISS) [Ostreococcus
tauri]
Length = 241
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 26/225 (11%)
Query: 129 HTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+ +I D E LF +P + KA+WAL++ + S
Sbjct: 24 EMYSLLIDQYVKDPAEKSHLFRAIETIPCVKKKADWALKWIDSSDS-------------- 69
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ + + EG++F F I L + M G+ + I RDE LH +F + +
Sbjct: 70 FAERLLAFACIEGIFFSGSFCSIYWLKKRGLMPGLTFSNELISRDEGLHRDFACLLYQML 129
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
K ++ R ++ EA +E + +++P VG+NA Y++++A+
Sbjct: 130 NN-------KPDEEVVRKIVTEAVEIEKEFVCDSLPCALVGMNAGMMSDYIEYVADHLFT 182
Query: 306 QIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+G+ + T NPF WM E+I L+ + NFFE RV EYQ+ +
Sbjct: 183 SLGMPKEYN-TANPFDWM-ELISLQGKTNFFEKRVGEYQKAGVMN 225
>gi|323354474|gb|EGA86313.1| Rnr2p [Saccharomyces cerevisiae VL3]
Length = 306
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 18/232 (7%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER
Sbjct: 74 KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WAL++ Q DAD F + L +
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
EG++F FA I L + M G+ + I RDE LH +F + +K +
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNK 290
>gi|162849427|emb|CAN10392.1| Ribonucleotide reductase small subunit [African swine fever virus
OURT 88/3]
gi|291289488|emb|CBH29145.1| BA71V-F334L [African swine fever virus E75]
gi|303398729|emb|CBW46710.1| F334L [African swine fever virus Georgia 2007/1]
Length = 334
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 80/330 (24%), Positives = 139/330 (42%), Gaps = 30/330 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L S + P+++ W Y + W EV M D+ W+ + +R
Sbjct: 9 EELLIENSQRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKPQREF 65
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D
Sbjct: 66 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 125
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E +F+ + P I A W Q+ D D+ L + V + EG
Sbjct: 126 EKEQQRIFSGIEKHPIIKKMAQWVRQWM-------------DPDRNTLGERLVGFAAVEG 172
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
+ F F I L N M G+ ++I RDE +H +F +I+ P +
Sbjct: 173 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGMHCSFACFLISNYVYNIPE------E 226
Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+ +L EA L + + K G + QY+++ + C + + ++K
Sbjct: 227 KIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 286
Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
NPFP M++ ++ ++ NFFE R T+YQ
Sbjct: 287 G-NPFPQMTKFFLNEVEKTNFFELRPTQYQ 315
>gi|326784150|ref|YP_004324543.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1]
gi|310004882|gb|ADO99273.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn1]
Length = 395
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 71/339 (20%), Positives = 127/339 (37%), Gaps = 27/339 (7%)
Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
V+ + M V + KY + W P EV +Q D A ++ L
Sbjct: 28 VDTTKQHMFFGPPLGVQRYDNFKYPVFDKLTQQQLGYFWRPEEVSLQKDRADYQQ---LR 84
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
+++ + NL + +S+ +A + S PE + E VHS ++ +II
Sbjct: 85 PEQKHIFTSNLKYQIMLDSVQGRGPGMAFMPYCSLPELESAMNIWQTMEMVHSRSYTHII 144
Query: 136 TSLGLDEGELFNMYREVPSITAK-----------------ANWALQYTQTLSSPSFTTGT 178
++ D +F+ I + + + +
Sbjct: 145 KNIYPDPSVVFDAIITDEKILERATSVTAAYDEFLQAAHMYDTGNMWKEDWKDSPTAKWE 204
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
+ L + EG+ FY FA + G M G A+ I RDES H+
Sbjct: 205 LKDLKRKLYRAVANVYILEGIRFYVSFACSFAFGENKLMEGNAKIISLIARDESQHMTIT 264
Query: 239 IDVINQIKIENPHLWT---KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
+++N+ K + +E ++ M ++ E+ +A G +GLNA ++
Sbjct: 265 QNILNKWKQGDDPDMVEIAQEEEKNVYEMFNKCVEEEVIWADYLFRDGSMIGLNAKLLQK 324
Query: 295 YMQFIANRRCHQIGLEPLFKY--TENPFPWMSEVIDLKK 331
Y+++ ANRR IGL+P F + NP PW + +
Sbjct: 325 YVEWTANRRMKSIGLKPTFDAPLSNNPLPWTEHWLSSRG 363
>gi|323333040|gb|EGA74442.1| Rnr2p [Saccharomyces cerevisiae AWRI796]
Length = 306
Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 18/232 (7%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER
Sbjct: 74 KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WAL++ Q DAD F + L +
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
EG++F FA I L + M G+ + I RDE LH +F + +K +
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNK 290
>gi|261868068|ref|YP_003255990.1| ribonucleoside-diphosphate reductase subunit beta [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|293389919|ref|ZP_06634253.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|261413400|gb|ACX82771.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|290950453|gb|EFE00572.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 329
Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats.
Identities = 68/320 (21%), Positives = 136/320 (42%), Gaps = 19/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
++ P +Y E + +++W+ TE D+ +++ ++D ER +I + + +
Sbjct: 13 RFEIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDFRTH--ISDVERAVITKTMLAIS 70
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +Y + PE E H + +++ LGL+ E+F R
Sbjct: 71 QIEVSV-KRFWGNLYNYFPKPEIEDVGGSFLESEIRHKDAYSFLLEKLGLN--EMFRNVR 127
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ +I A+ + + + + Q+F+ L +F + E + ++ F ++S
Sbjct: 128 QYKAIMARIEYMEAFMRK---------KDVSQQDFVLSLVMFSLFVEHISLFSQFVIMMS 178
Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N GI+ + ++E +H FGI + + ++ E P L+T EF + + + +A
Sbjct: 179 FNKHKNLFKGISNAVEATSKEEEIHGRFGISLYHLLREEQPELFTDEFYAELKELAEQAF 238
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
E A G + L+ + E Y+ N +GLEP++ + W
Sbjct: 239 NAEKAILDWIFEDGELSFLSKATVENYIANRYNNSLVTLGLEPIYNISPAQLKETEWFDI 298
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
I KE +FF R T+Y +
Sbjct: 299 EILSTKETDFFNKRSTDYSK 318
>gi|215275539|sp|P0C8I1|RIR2_ASFP4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
Length = 327
Score = 163 bits (411), Expect = 5e-38, Method: Composition-based stats.
Identities = 77/330 (23%), Positives = 136/330 (41%), Gaps = 30/330 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L S + P+++ W Y + W EV M D+ W+ + +R
Sbjct: 2 EELLIENSHRFTIFPIQHPECWNWYKKLESLTWTAQEVDMCKDIDDWE---AMPKSQREF 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
K+ L FF ++ +V N++ R + E + QA +E VHS + + +L D
Sbjct: 59 YKQILAFFVVADEIVIENLLTNFMREIKVKEVLYFYTMQAAQECVHSEAYSIQVKTLIPD 118
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E +F+ + P I A W Q+ + + V + EG
Sbjct: 119 EKEQQRIFSGIEKHPIIKKMAQWVRQWMDPTKNSLG-------------ERLVGFAAVEG 165
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
+ F F I L N M G+ ++I RDE +H +F +I+ P +
Sbjct: 166 ILFQNHFVAIQFLKEQNIMPGLVSYNEFISRDEGVHCSFACFLISNYVYNIPE------E 219
Query: 259 QKSRTMLHEATLLEIAYAHETMPK---GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+ +L EA L + + K G + QY+++ + C + + ++K
Sbjct: 220 RIIHKILKEAVELVDEFINYAFDKARGRVPGFSKEMLFQYIRYFTDNLCFMMQCKSIYKV 279
Query: 316 TENPFPWMSE-VIDLKKEKNFFETRVTEYQ 344
NPFP M++ ++ ++ NFFE R T+YQ
Sbjct: 280 G-NPFPQMTKFFLNEVEKTNFFELRPTQYQ 308
>gi|190896526|gb|ACE96776.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 223
Score = 163 bits (411), Expect = 5e-38, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 26/244 (10%)
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKA 159
+ + + E R + Q E + S + ++ + D E LF+ VP + KA
Sbjct: 3 RLMKEVQVSEARAFYGFQIAIENIRSEMYSLLLETYIKDSEEKNRLFHAMETVPCVAKKA 62
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
WAL++ D + F + L + EG++F F I L + M G
Sbjct: 63 QWALRWI-------------DGSESFAERLVA-FACVEGIFFSGSFCAIFWLKKRGLMPG 108
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE LH +F + + ++ + +++ + ++ +A +E + +
Sbjct: 109 LTFSNELISRDEGLHCDFACLLYSLLRKKLS-------EERVKGIVKDAVDIEREFVVDA 161
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N QY++F+A+R +G ++ NPF M E+I L+ + NFFE R
Sbjct: 162 LPCALVGMNGELMSQYIEFVADRLLGALGCGKVYYVA-NPFDGM-ELISLQGKTNFFEKR 219
Query: 340 VTEY 343
V EY
Sbjct: 220 VGEY 223
>gi|332306884|ref|YP_004434735.1| Ribonucleoside-diphosphate reductase [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332174213|gb|AEE23467.1| Ribonucleoside-diphosphate reductase [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 376
Score = 163 bits (411), Expect = 5e-38, Method: Composition-based stats.
Identities = 70/332 (21%), Positives = 126/332 (37%), Gaps = 25/332 (7%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M +V + K+ + + W P EV + D ++ L++ E+
Sbjct: 16 EPMFFGNPVNVARYDQQKHSIFEKLIEKQISFFWRPEEVDVSKDRVDFQ---KLSESEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + +A +S PE + +F E +HS ++ +I+ +L
Sbjct: 73 IFISNLKYQTLLDSIQGRSPNIAFLPIISIPELETWTETWSFFETIHSRSYTHILRNLFG 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS----------SPSFTTGTKDADQEFLQDLF 190
D +F E I +A +Y L + ++
Sbjct: 133 DPSSIFADIVENEQIKKRAADISKYYDDLIFYTQLWQTLGEGTHNINGEEHVVTMRSLKV 192
Query: 191 VFYVVF------EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
++ E + FY FA + M G ++ + I RDE+LHL ++N
Sbjct: 193 KLFLCMNSVNALEAIRFYVSFACTFAFAERELMEGNSKIIRLISRDENLHLTSTQHILNL 252
Query: 245 IKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
E ++Q++ + +A E +A G +GLN QY++FI
Sbjct: 253 WAKGKDDPEMAEIAIEYKQQATDIFLDAVNQEKEWAEYLFQNGSMIGLNKDILCQYVEFI 312
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
AN R IGL F NP PWM+ ++
Sbjct: 313 ANHRMSAIGLGQPFDIKNNPLPWMNNYLNSDN 344
>gi|90407600|ref|ZP_01215781.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp.
CNPT3]
gi|90311303|gb|EAS39407.1| ribonucleoside-diphosphate reductase beta chain [Psychromonas sp.
CNPT3]
Length = 424
Score = 163 bits (411), Expect = 5e-38, Method: Composition-based stats.
Identities = 74/323 (22%), Positives = 138/323 (42%), Gaps = 18/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
L P +Y E + +++W+ TE D+ +K L+ ER +IKR + +
Sbjct: 107 RINLKPYEYPEILEYVDAIRHSYWIHTEFNFTSDIQDFK--VRLSHPEREVIKRTMLAIS 164
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V IY + PE A E H + +++ LGL++ F+
Sbjct: 165 QIEVSV-KTFWGNIYTKMPKPEIGSVGATFAESEVRHHDAYSHLLEILGLNDE--FSKLE 221
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P I + + + + ++E+ + + +F + E + ++ F I+S
Sbjct: 222 ENPDIMTRVRYL--------ESALKHANSEDNKEYSESILLFSLFIEHVSLFSQFLIIMS 273
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N + GI+ + ++E LH NFGID+I IK ENP + +E+QQ RT+ +A
Sbjct: 274 FNKYKNMLKGISNVVEATSKEEQLHGNFGIDLIQIIKQENPSWFNEEYQQSVRTLCLQAF 333
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
E +G + + +++++ N+ I +E +F+ E W +
Sbjct: 334 KSESKIIDWIYAEGELDFIPKAQVKEFIKNRFNQSLQSIDIEKVFEIDEKLLEKTEWFDD 393
Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
I K +FF R Y + ++
Sbjct: 394 EIIGTKHGDFFVKRSINYNKRSK 416
>gi|87120532|ref|ZP_01076426.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp.
MED121]
gi|86164175|gb|EAQ65446.1| ribonucleotide-diphosphate reductase beta subunit [Marinomonas sp.
MED121]
Length = 377
Score = 163 bits (411), Expect = 5e-38, Method: Composition-based stats.
Identities = 76/337 (22%), Positives = 137/337 (40%), Gaps = 28/337 (8%)
Query: 15 KRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
KR + + M +V + K+ + + W P EV + D ++
Sbjct: 9 KRFDSMKEPMFFGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSSDRKDFQH--- 65
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +
Sbjct: 66 LEAHEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPELETWIETWSFSETIHSRSYTH 125
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS------------------SPSFT 175
II ++ + G +F+ E IT +A ++ L
Sbjct: 126 IIRNIVNEPGVVFDDITENTEITKRAESVSKWYDDLILLVGLYNTLGPGIHNVPGKGDVN 185
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
K + + V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 186 VNLKALKKALYLTMVSVNVL-EAIRFYVSFACSFAFAERTLMEGNAKIIKLIARDEALHL 244
Query: 236 NFGIDVINQIK--IENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + KE + ++ + EA E +A G +GLNA
Sbjct: 245 TGTQHILNLMASGKDDPEMEDIAKECEDEAYQIFFEAAEQEKEWASYLFKDGSMIGLNAQ 304
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R IGL P F+ NP PW++ +
Sbjct: 305 ILGQYVEYITNIRMQAIGLLPTFETKHNPIPWINAWL 341
>gi|261404531|ref|YP_003240772.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10]
gi|261280994|gb|ACX62965.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. Y412MC10]
Length = 343
Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats.
Identities = 78/350 (22%), Positives = 147/350 (42%), Gaps = 20/350 (5%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+ I E N + + S + ++ ++ Y NHW+ E+PM D
Sbjct: 3 MQKIFNTEAP-NRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQ 61
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L +E+ K N+ A +S+ V + R+ ++ +E V
Sbjct: 62 QF---PRLDPEEQRTFKINISLLAVLDSMQT-MFVSDVKRYFTDSSLEAISAIIGQQEVV 117
Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ Y+++S+ ++ E+F ++ P + + + Q + +
Sbjct: 118 HNQSYSYVLSSIVSEQEQKEIFEYWKHDPVLLERNQFISNIYQNFRD--------NPSPQ 169
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ V ++ EG++FY+ FA +L R KM+ ++ YI RDE+ H F +V Q
Sbjct: 170 SFFEAMVADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQ 229
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ + P L TKE + A LE +AH T+ G++ Y+++IANRR
Sbjct: 230 LLKDFPELNTKENIDYLYRTIDRAVELETNWAHYTLSN-VRGIDLNELSDYIKYIANRRI 288
Query: 305 HQIGLEPLFK-YTENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAELK 350
+GLE ++ N PW S+ + +FFE + Y + +
Sbjct: 289 TMMGLEKAYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGDDN 338
>gi|304414248|ref|ZP_07395616.1| ribonucleotide reductase beta subunit [Candidatus Regiella
insecticola LSR1]
gi|304283462|gb|EFL91858.1| ribonucleotide reductase beta subunit [Candidatus Regiella
insecticola LSR1]
Length = 381
Score = 162 bits (410), Expect = 7e-38, Method: Composition-based stats.
Identities = 70/340 (20%), Positives = 128/340 (37%), Gaps = 25/340 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + KY + + W P E+ + D ++
Sbjct: 13 QNKNDQLKEPMFFGQSVNVARFDQQKYAIFEKLIEQQLSFFWRPEEIDVSQDRTDYQ--- 69
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 70 KLPPHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 129
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFV 191
+II ++ D +F+ I +A Y L + + + +
Sbjct: 130 HIIRNIVNDPSLIFDDIVTNEEILKRAEDISAYYDDLIKMTSYYHLLGEGTHHINSETIT 189
Query: 192 FYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 190 VNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLT 249
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ KE Q + +A E +A G +GLN
Sbjct: 250 GTQHIINLMREGTDDPEMAEIAKECQNNCFELFKKAAEQEKEWATYLFRDGSMIGLNKDI 309
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
QY+++I N R +GL FK NP PW++ +
Sbjct: 310 LCQYIEYITNIRMQAVGLALPFKIRSNPIPWINAWLSSDN 349
>gi|88801652|ref|ZP_01117180.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter
irgensii 23-P]
gi|88782310|gb|EAR13487.1| ribonucleoside-diphosphate reductase, beta subunit [Polaribacter
irgensii 23-P]
Length = 424
Score = 162 bits (409), Expect = 8e-38, Method: Composition-based stats.
Identities = 66/323 (20%), Positives = 132/323 (40%), Gaps = 18/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
L P Y E + +++W+ TE D+ +K+ L++ E+ IK + +
Sbjct: 107 RLNLKPYDYPALTEYVDAIRHSYWIHTEFNYTSDIQDFKAY--LSETEKSAIKNTMLAIS 164
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E IY+ + PE A E H + +++ LGL+ F +
Sbjct: 165 QIEV-AVKTFWGDIYKKMPKPEIGAVGSTFAESEVRHHDAYSHLLEILGLNNE--FENLK 221
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ P + + N+ + + ++EF + + +F + E + ++ F I++
Sbjct: 222 KNPVMMRRVNYL--------EGALKNVKSEDNKEFSESIILFSLFIEHVSLFSQFLIIMA 273
Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N + GI+ + ++E +H +FGID+I IK ENP + ++ + M EA
Sbjct: 274 FNKHKNVLKGISNVVEATSKEEQIHGDFGIDIIKIIKEENPDWFDEDHSLMVQEMCEEAF 333
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
+ E KG + L +++++ N+ IG+ +F+ W +
Sbjct: 334 ISESKIIDWIFEKGELDFLPKNVIKEFIKNRFNKSLGSIGIAKIFEIDATLLAQTDWFDD 393
Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
I K +FF R Y + +
Sbjct: 394 EIIGTKHGDFFVKRSINYSKRTK 416
>gi|325103985|ref|YP_004273639.1| ribonucleotide reductase [Pedobacter saltans DSM 12145]
gi|324972833|gb|ADY51817.1| ribonucleotide reductase [Pedobacter saltans DSM 12145]
Length = 324
Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats.
Identities = 75/320 (23%), Positives = 130/320 (40%), Gaps = 18/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y + + + W+ +E+ D + S L+ +E+ IKR+L A
Sbjct: 7 RINYKPFEYPEVLDFTNAINKSFWVHSEIDFTADTQDFHSH--LSTNEKESIKRSLLAIA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V + +Y HL PE A E HS + ++ LG + F
Sbjct: 65 QIEVNV-KSFWGNLYNHLPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNNE--FEKVI 121
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E+P I + + S + D + +++ L +F ++ E + ++ FA ILS
Sbjct: 122 EIPVIKKRIAY--------LSNALKDTKSDDKKAYIKSLILFTILIENVSLFSQFAIILS 173
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
R M ++ + DE LH N GI +IN+IK E P + +Q+ ++ E+
Sbjct: 174 FTRFQGVMKNVSNIIAWTSIDEQLHANAGIYIINKIKEEFPEYIDEAVEQEIYDIVTESI 233
Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325
+E G +N +M++ + QIG + L+ +E +P W E
Sbjct: 234 NIEDEILGWIFENGDLEHINRRDLLNFMKYRIDVSLQQIGFKKLYNVSETEYSPMVWFEE 293
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
I +FF R EY +
Sbjct: 294 EIFANSLDDFFAKRPVEYTK 313
>gi|332974193|gb|EGK11127.1| ribonucleotide-diphosphate reductase beta subunit [Psychrobacter
sp. 1501(2011)]
Length = 377
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 68/342 (19%), Positives = 137/342 (40%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + K+ + + W P EV + D +
Sbjct: 8 QTKNDALKEPMFFGQPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDRIDY---G 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L+ E+ + NL + +S+ + + + +S PE ++ +F E +HS ++
Sbjct: 65 NLSTHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-----------------SSPSFT 175
+II ++ D +F+ + I +A+ Y L +
Sbjct: 125 HIIRNIVNDPAVVFDDIMDNEHILQRASDIAHYYDELYQNSQLYSLFGPGTHMVNGEQKH 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+ ++ L V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VDLRKLKKQLYLCLVAVNVL-EAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+IN ++P + ++ +++S + +A E +A G +GLN
Sbjct: 244 TSTQHMINILASGKDDPEMAEIAEDCREESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK 331
QY+++I N R +GL +F ++ NP PW++ +
Sbjct: 304 ILCQYVEYITNLRMEAVGLPSIFPDSKSNPIPWINTWLSSDN 345
>gi|323337103|gb|EGA78359.1| Rnr2p [Saccharomyces cerevisiae Vin13]
Length = 296
Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 104/227 (45%), Gaps = 18/227 (7%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER
Sbjct: 74 KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E LFN +P I KA WAL++ Q DAD F + L +
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQ------------DADALFGERLVA-FASI 238
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
EG++F FA I L + M G+ + I RDE LH +F +
Sbjct: 239 EGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLFVR 285
>gi|308067265|ref|YP_003868870.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
reductase small subunit) [Paenibacillus polymyxa E681]
gi|305856544|gb|ADM68332.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide
reductase small subunit) [Paenibacillus polymyxa E681]
Length = 343
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 80/350 (22%), Positives = 152/350 (43%), Gaps = 20/350 (5%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
L I E N + + S + ++ ++ Y NHW+P E+PM D +
Sbjct: 3 LQKIFNTEAP-NRSTRIIEGENSGILNWNDIRMPHMYKLYKVLLLNHWIPDEIPMSKDAS 61
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L +E+ K N+G A +S+ V + R+ ++ +E V
Sbjct: 62 QF---PVLDAEEQRTFKINIGLLAVLDSMQT-MFVGDVKRYFTDSSLEAISAIIGQQEVV 117
Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ Y+++SL ++ E+F ++ P + + + Q + + +
Sbjct: 118 HNQSYSYVLSSLVSDQEQKEIFEYWKNDPVLLERNTFISDIYQEFRD--------EQNPQ 169
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V ++ EG++FY+ FA +L R KM+ ++ YI RDE+ H F +V Q
Sbjct: 170 TFFQAMVADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQ 229
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ + P L TKE M++ A LE +AH T+ K G++ Y++++AN R
Sbjct: 230 LLSDFPELNTKENTDYVYRMINRAVELETNWAHYTL-KEVRGIDLNELSDYIKYMANMRL 288
Query: 305 HQIGLEPLFK-YTENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAELK 350
+G++ ++ N PW S+ + +FFE + Y + +
Sbjct: 289 RLLGMDKAYEGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGDDN 338
>gi|93005945|ref|YP_580382.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter
cryohalolentis K5]
gi|92393623|gb|ABE74898.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Psychrobacter cryohalolentis K5]
Length = 377
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 71/341 (20%), Positives = 132/341 (38%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ N + M +V + K+ + + W P EV + D +
Sbjct: 8 QTPNNALTEPMFFGNPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDRMDF---G 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L+ E+ + NL + +S+ + + + +S PE ++ F E +HS ++
Sbjct: 65 NLSSHEQHIFLSNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------------SSPSFTT 176
+II ++ D +F+ + I +A +Y L + T
Sbjct: 125 HIIRNIINDPAIVFDDIMQNEHILGRAADIAKYYDDLYYSSSLYNLYGAGTHTINGKQIT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ ++ L + V E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 IDLKSLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++I KE ++S + +A E +A G +GLN
Sbjct: 245 GTQHILNLMRIGRDDPEMVDIAKECYEESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK 331
QY+++I N R +GL F ++ NP PW++ +
Sbjct: 305 LCQYIEYITNLRMEAVGLPVAFPNSKSNPIPWINTWLSSDN 345
>gi|331653669|ref|ZP_08354670.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli M718]
gi|331048518|gb|EGI20594.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli M718]
Length = 449
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 81 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 137
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 138 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 197
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 198 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 257
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 258 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 316
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 317 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 376
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 377 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 413
>gi|239502693|ref|ZP_04662003.1| ribonucleotide-diphosphate reductase subunit beta [Acinetobacter
baumannii AB900]
Length = 309
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 97/321 (30%), Positives = 161/321 (50%), Gaps = 17/321 (5%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
+ P+K+ WA NN W P V M DD+A + N L +R M + L F ++ +
Sbjct: 3 ISPMKHTWAKGILDRMENNTWFPHVVNMADDVASY---NRLNAADRFMFDKALAFLSNLD 59
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
+ NNI I +H+++PE L RQA+EEA+H ++ II ++ LD ++ +
Sbjct: 60 GIQFNNINQNIAKHVTSPEVSMCLSRQAWEEALHVKSYATIIETVSLDPMSVYMTFERDG 119
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ K + L+ S G K + + F V+ EG++F++GF L
Sbjct: 120 LLAQKNQFILK-------QSRLLGEKFSAEGFALSCVS-NVLLEGVYFFSGFLSFYLLAD 171
Query: 214 ANKMVGIAEQYQYIMRDES-LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
+M+G A+ +YI RDE HL+ +++ ++ EN ++T+ F K+ + ++ +E
Sbjct: 172 KGEMLGSADMIRYIQRDEEGTHLDLFAHMLDTLRHENKDVFTQSFWNKALEVFLTSSEME 231
Query: 273 IAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDLKK 331
I++ KG N + E Y++ +AN R QI + +NPFPW+ +
Sbjct: 232 ISWGKYIT-KGVT--NPKAIEDYIKHLANLRAEQIQAPFVPYPGVKNPFPWVEQFSKPNT 288
Query: 332 -EKNFFETRVTEYQQGAELKW 351
EKNFFETRVT+Y+ G L W
Sbjct: 289 SEKNFFETRVTDYKVGGALVW 309
>gi|331642864|ref|ZP_08343999.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli H736]
gi|331039662|gb|EGI11882.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli H736]
Length = 449
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 81 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 137
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 138 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 197
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 198 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 257
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 258 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 316
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 317 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 376
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 377 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 413
>gi|110806205|ref|YP_689725.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
flexneri 5 str. 8401]
gi|110615753|gb|ABF04420.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
flexneri 5 str. 8401]
gi|281601680|gb|ADA74664.1| putative ribonucleotide reductase, beta subunit [Shigella flexneri
2002017]
Length = 453
Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 85 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 141
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 142 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 201
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 202 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 261
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 262 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 320
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 321 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 380
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 381 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 417
>gi|315644971|ref|ZP_07898099.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453]
gi|315279682|gb|EFU42984.1| Ribonucleoside-diphosphate reductase [Paenibacillus vortex V453]
Length = 343
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 76/350 (21%), Positives = 147/350 (42%), Gaps = 20/350 (5%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+ I E N + + S + ++ ++ Y NHW+ E+PM D
Sbjct: 3 MQKIFNTEAP-NRSTRVIEGECSGILNWNDIRMPHMYKLYKVLLLNHWIADEIPMSKDAQ 61
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ + L +E+ K N+ A +S+ V + R+ ++ +E V
Sbjct: 62 QFPT---LDSEEQRTFKINISLLAVLDSMQT-MFVSDVKRYFTDSSLEAISAIIGQQEVV 117
Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ Y+++S+ ++ E+F ++ P + + + Q + +
Sbjct: 118 HNQSYSYVLSSIVSDQEQKEIFEYWKHDPVLLERNQFISDIYQNFRD--------NPSPQ 169
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ V ++ EG++FY+ FA +L R KM+ ++ YI RDE+ H F +V Q
Sbjct: 170 TFFEAMVADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQ 229
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ + P L ++E + A LE +AH T+ G++ Y+++IANRR
Sbjct: 230 LLKDFPELNSQENIDYLYRTIDRAVELETNWAHYTLSN-VRGIDLNELGDYIKYIANRRI 288
Query: 305 HQIGLEPLF-KYTENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAELK 350
+GLE + N PW S+ + +FFE + Y + +
Sbjct: 289 TMMGLEKAYQGVDVNCMPWIKPFSDEALNATKTDFFEAKSRNYGKVGDDN 338
>gi|327198722|emb|CCA61423.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
Length = 395
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 74/382 (19%), Positives = 136/382 (35%), Gaps = 68/382 (17%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P +Y + K+ +HW+P EVPM DD+ W N L D+++ + FF +
Sbjct: 10 YKPFQYEQFYNKWKVHERSHWLPAEVPMHDDVHDWN--NRLDDNQKKFLTNIFRFFTQGD 67
Query: 94 S-LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ + PE ++ A EAVH + ++I +LG+ E + + E
Sbjct: 68 VDVAGAYCSEYLPNFCETPEIAMFMCSVAAREAVHIDAYSHLIETLGMPES-TYREFLEY 126
Query: 153 PSITAKANWALQY----TQTLSSPSFTTGTKDA--------------------------- 181
+ K ++ ++ +L SF T
Sbjct: 127 HEMKEKQDYIKKFQHGNYGSLKDDSFMTKLGVCISMLVLVVLFALGVDVLVWFSSLLPAV 186
Query: 182 ---------------DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
+ + +F EGM ++ F +LS M G+ + +
Sbjct: 187 MLASSHIHRYRQRLIKEHIAAGIALFSGFTEGMQLFSSFTMLLSFPMNGLMKGMGQIVSW 246
Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKE-----------FQQKSRTMLHEATLLEIAY 275
+ DE+ H + I + EN + + + E LE +
Sbjct: 247 SIVDETQHTDGMITLFKIFVDENTECRCNPILGCNCIRPDVLRDTVKKIALEMVRLEDEF 306
Query: 276 AHETMPKG-----FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDL 329
+ + F+ ++ +QY++FIAN+R + + F ++NP P +I+
Sbjct: 307 INLAYDEYADDEVFMNISKTKLKQYIRFIANKRMEAMRYDHPFPEASDNPLPEFEIMINA 366
Query: 330 KKEKNFFETRVTEYQQGAELKW 351
NFFE R T+Y + W
Sbjct: 367 PINTNFFENRSTDYARTNN-DW 387
>gi|148244629|ref|YP_001219323.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Vesicomyosocius okutanii HA]
gi|146326456|dbj|BAF61599.1| ribonucleoside-diphosphate reductase beta subunit [Candidatus
Vesicomyosocius okutanii HA]
Length = 378
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 71/332 (21%), Positives = 138/332 (41%), Gaps = 25/332 (7%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M + +V + K+ + + W P E+ + D + L +E+
Sbjct: 16 EPMFFGNTVNVARFDKQKFEIFEKLTEKQLSFFWRPEEIDVSKDKIDF---AKLLPNEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + + +A +S PE ++ +F E +HS ++ +II ++
Sbjct: 73 IFISNLQYQILLDSVQSRSPNIAFLPIVSLPELENWIETWSFSETIHSRSYTHIIRAIVN 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSF--------TTGTKDADQEFLQDL--- 189
+ G +F+ ++ I +A ++ L + +D +
Sbjct: 133 EPGIVFDDIMKIDEIIQRAESVSKHYNELIKCTQAYLLHGIGKFKVQDKEILIDLYCLKK 192
Query: 190 -----FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 193 QLYLTIMSVNILEAVQFYVSFACSFAFAERKVMEGNAKIIRMIARDEALHLTGTQHILNL 252
Query: 245 IK--IENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
+ ++P + KE +++ TM EA E +A G +GLNA +QY+++I
Sbjct: 253 MSDGKDDPDMKKIAKECEKEVITMFKEACEQEKDWAEYLFRDGSMIGLNAKMLKQYLEYI 312
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
N R + L P+F NP PW++ +D
Sbjct: 313 TNVRMKALNLSPVFDECINPLPWINHWLDSDN 344
>gi|227356095|ref|ZP_03840485.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus
mirabilis ATCC 29906]
gi|227163740|gb|EEI48652.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus
mirabilis ATCC 29906]
Length = 376
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 76/334 (22%), Positives = 135/334 (40%), Gaps = 25/334 (7%)
Query: 16 RVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
R + + M + +V + KY + + W P EV + D + N L
Sbjct: 10 RNDQLQEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NAL 66
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++ +I
Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHI 126
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------TGT 178
I ++ D +F+ E I +A Y L + + T
Sbjct: 127 IRNIVNDPSVVFDDIVENKEILKRARDISSYYDELINLTNLYHMFGEGTHQIKGKTVEVT 186
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 187 LRKLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGT 246
Query: 239 IDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
++N + ++P + E +Q+ + EA E +A +G +GLN
Sbjct: 247 QHMLNLLRSGQDDPEMAEIAAECEQECYDLFVEAAEQEKEWAEYLFSEGSMIGLNKEILC 306
Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ FK NP PW++ +
Sbjct: 307 QYVEYITNIRMQAVGLKLPFKARSNPIPWINAWL 340
>gi|295098106|emb|CBK87196.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 420
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 135/336 (40%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 52 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ--- 108
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 109 ALPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 168
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y L + T
Sbjct: 169 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMTSYWHLLGEGTHNVNGKTVT 228
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 229 VNLRTLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLT 288
Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 289 GTQHMLNLLRSGADDPEMAAIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKDI 348
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 349 LCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 384
>gi|78486104|ref|YP_392029.1| ribonucleotide-diphosphate reductase subunit beta [Thiomicrospira
crunogena XCL-2]
gi|78364390|gb|ABB42355.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Thiomicrospira crunogena XCL-2]
Length = 377
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 76/327 (23%), Positives = 138/327 (42%), Gaps = 20/327 (6%)
Query: 18 NVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
N + M +V + K+ + + W P E+ + D + L +
Sbjct: 18 NALKEPMFFGQNVNVARYDQQKHPIFEKLIEKQLSFFWRPEEIDLSSDRGEY---ANLPE 74
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II
Sbjct: 75 HEKHVFISNLKYQTLLDSVQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIR 134
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD----ADQEFLQDL--- 189
++ D +F+ I +A Y L + + ++ + F +++
Sbjct: 135 NIVSDPSLVFDDIVANEEIVKRAISVTVYYDKLINLTNRMYAEEIDLETNDAFRKEIKTA 194
Query: 190 ----FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN-- 243
V V E + FY FA S + M G A+ + I RDE+LHL+ +IN
Sbjct: 195 LFLTIVSVNVLEAIRFYVSFACSFSFAERSLMEGNAKIIKLIARDEALHLSGTQHLINIL 254
Query: 244 QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIA 300
++P + KE ++K + EA E +A G +GLNA + Y+++I
Sbjct: 255 SEGKDDPEMMEIAKENEEKVYEIFREAAEQEKEWADYLFKDGSMIGLNASILKDYVEYIT 314
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVI 327
N R I L P+F+ NP PWM+ +
Sbjct: 315 NTRIKAIKLNPIFENKSNPLPWMNNWL 341
>gi|197285594|ref|YP_002151466.1| ribonucleotide-diphosphate reductase subunit beta [Proteus
mirabilis HI4320]
gi|194683081|emb|CAR43612.1| ribonucleoside-diphosphate reductase 1, beta subunit [Proteus
mirabilis HI4320]
Length = 376
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 76/334 (22%), Positives = 135/334 (40%), Gaps = 25/334 (7%)
Query: 16 RVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
R + + M + +V + KY + + W P EV + D + N L
Sbjct: 10 RNDQLQEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NAL 66
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++ +I
Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHI 126
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------TGT 178
I ++ D +F+ E I +A Y L + + T
Sbjct: 127 IRNIVNDPSVVFDDIVENEEILKRARDISSYYDELINLTNLYHMFGEGTHQIKGKTVEVT 186
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 187 LRKLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGT 246
Query: 239 IDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
++N + ++P + E +Q+ + EA E +A +G +GLN
Sbjct: 247 QHMLNLLRSGQDDPEMAEIAAECEQECYDLFVEAAEQEKEWAEYLFSEGSMIGLNKEILC 306
Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ FK NP PW++ +
Sbjct: 307 QYVEYITNIRMQAVGLKLPFKARSNPIPWINAWL 340
>gi|311278798|ref|YP_003941029.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
gi|308747993|gb|ADO47745.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
Length = 376
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 74/337 (21%), Positives = 139/337 (41%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ I +A QY TL + T
Sbjct: 125 HIIRNIVNDPATVFDDIVTNEQIQKRAEGISQYYDTLIELTSYWHLLGEGTHSVNGKTIT 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+D ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 244 TGTQHMLNLLRSGSDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|149911236|ref|ZP_01899859.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp.
PE36]
gi|149805690|gb|EDM65689.1| ribonucleotide-diphosphate reductase beta subunit [Moritella sp.
PE36]
Length = 376
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 71/340 (20%), Positives = 131/340 (38%), Gaps = 25/340 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTPNDQLKEPMFFGQHVNVARFDQQKYEIFEKLIERQLSFFWRPEEVDVSKDRIDYQQ-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 66 -LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
+II ++ D E+F+ I +A Y L + + +
Sbjct: 125 HIIRNIINDPSEVFDDIVANEEILKRAKDIAGYYDDLINATQQLHQLGEGTHVVNGETIV 184
Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
V V E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSQRAVKKKLYLAMVSVNVLEAVRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIK--IENPHLWTK--EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + E Q+++ + +A E +A G +GLN
Sbjct: 245 STQHILNLMADGKDDPEMQEISIECFQETQKIFTDAAQQEKEWAEYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
Y+++I N R +GL F+ NP PW++ +
Sbjct: 305 LSDYIEYITNTRMAAVGLPKAFEVKSNPLPWINAWLISDN 344
>gi|288549884|ref|ZP_06390831.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
cancerogenus ATCC 35316]
gi|288317051|gb|EFC55989.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
cancerogenus ATCC 35316]
Length = 420
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 68/336 (20%), Positives = 130/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 52 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ--- 108
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 109 ALPEHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 168
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFV 191
+II ++ D +F+ I +A Y L + + +
Sbjct: 169 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMTSYWHLLGEGTHNVNGRTVT 228
Query: 192 FYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 229 VNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLT 288
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ +E +Q+ + +A E +A G +GLN
Sbjct: 289 GTQHMLNLLRSGTDDPEMAAIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKDI 348
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 349 LCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 384
>gi|149197800|ref|ZP_01874849.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera
araneosa HTCC2155]
gi|149139021|gb|EDM27425.1| ribonucleotide-diphosphate reductase beta subunit [Lentisphaera
araneosa HTCC2155]
Length = 376
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 129/335 (38%), Gaps = 25/335 (7%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ + M + +V++ K+ + + W P EV + D A +K L
Sbjct: 12 DPLKEPMFFGNNVNVSRYDQQKHPVFEQLIEKQLSFFWRPEEVDLSRDRADFK---KLPA 68
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + NL + +S+ + +A +S PE ++ AF E +HS ++ +II
Sbjct: 69 HEKHIFLSNLKYQTLLDSVQGRSPNVAFLPVISIPELETWVETWAFSETIHSRSYTHIIR 128
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-------------FTTGTKDADQ 183
++ D E+F+ SI +A+ Y + +
Sbjct: 129 NIVNDPSEIFDDIVNNESIIQRASSVSHYYDSFIELQCYYNLLGEGTHMINDVPVVVNMR 188
Query: 184 EFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E + LF+ V V E + FY FA + M G A+ + I RDE+LHL
Sbjct: 189 ELKRRLFLTVVSVNVLEAIRFYVSFACSFAFAERAVMEGNAKIIKLIARDEALHLTGTQQ 248
Query: 241 VINQIKIENPHLWTKEFQQKS----RTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
+I + E + + A E +A G +GLNA Y
Sbjct: 249 MIQIFREGKDDPEMAEIAAECEGQVYQIFSSAAEQEKEWAKFLFRDGSMIGLNADILGDY 308
Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
+++I N R G + +F T+NP PWM+ +
Sbjct: 309 VEYITNVRLKASGYKNVFPTTQNPLPWMNSWLSSD 343
>gi|148653376|ref|YP_001280469.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter
sp. PRwf-1]
gi|148572460|gb|ABQ94519.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Psychrobacter sp. PRwf-1]
Length = 377
Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats.
Identities = 69/341 (20%), Positives = 128/341 (37%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + K+ + + W P EV + D +
Sbjct: 8 QTKNDALKEPMFFGQPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSKDRIDY---G 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L+ E+ + NL + +S+ + + + +S PE ++ +F E +HS ++
Sbjct: 65 NLSTHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
+II ++ D +F+ E I +A+ Y L S +
Sbjct: 125 HIIRNIVNDPAVVFDDIMENEHILQRASDIAYYYDDLYQHSQLYSLFGPGTHIVNGEEKY 184
Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ V E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VDLRKLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN + E +S + +A E +A G +GLN
Sbjct: 245 STQHMINIMASGKDDPEMAEISAQCHNESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK 331
QY+++I N R +GL +F ++ NP PW++ +
Sbjct: 305 LCQYVEYITNLRMEAVGLPGIFPESKSNPIPWINTWLSSDN 345
>gi|260772919|ref|ZP_05881835.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
metschnikovii CIP 69.14]
gi|260612058|gb|EEX37261.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
metschnikovii CIP 69.14]
Length = 377
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 75/342 (21%), Positives = 135/342 (39%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M + +V + KY + + W P EV + D +
Sbjct: 8 QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
+II ++ D +F+ E I +A Y L+ +
Sbjct: 125 HIIRNIINDPAVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRFGEGKHQLNDETIN 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLTELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+IN ++ +E +Q+ + EA E +A G +GLN
Sbjct: 244 TGTQHMINLLRNGLDDFTFLQIAEECKQQCFDLFKEAAEQEKEWAAYLFKDGSMIGLNRD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
QY+++I N R +GLEP + T NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLEPAYPKATSNPIPWINAWLSSDN 345
>gi|88859281|ref|ZP_01133921.1| ribonucleotide-diphosphate reductase beta subunit
[Pseudoalteromonas tunicata D2]
gi|88818298|gb|EAR28113.1| ribonucleotide-diphosphate reductase beta subunit
[Pseudoalteromonas tunicata D2]
Length = 376
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 69/332 (20%), Positives = 132/332 (39%), Gaps = 25/332 (7%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
N + M +S +V++ K+ + + W P EV + D ++ L D
Sbjct: 12 NQLKEPMFFGQSVNVSRYDQQKHPIFEKLIEKQLSFFWRPEEVDVSKDRVDFE---NLPD 68
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II
Sbjct: 69 HEKHIFLSNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIR 128
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFL--------- 186
++ +F+ + I +A+ +Y L + + +
Sbjct: 129 NVTKQPELIFDDIVDNDKIKERADEVTRYYDDLIEYTSIYNLYGEGKHQINDQTVVINLF 188
Query: 187 ------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ + E + FY FA + M G A+ + I RDE+LHL+
Sbjct: 189 ELKKKLYRAIMSVNILEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQH 248
Query: 241 VINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
++N ++ + +++S M A E +A G +GLN QY
Sbjct: 249 MLNIMQDGQDDPEMAIVAAQLREESIEMFRTAAQQEKEWAEYLFKDGSMIGLNKDILCQY 308
Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+++I N R +GL F T NP PW++ +
Sbjct: 309 VEYITNVRMSAVGLPQQFSITSNPIPWINSWL 340
>gi|324020907|gb|EGB90126.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 117-3]
Length = 420
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 52 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 108
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 109 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 168
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 169 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 228
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 229 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 287
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 288 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 347
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 348 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 384
>gi|71065825|ref|YP_264552.1| ribonucleotide-diphosphate reductase subunit beta [Psychrobacter
arcticus 273-4]
gi|71038810|gb|AAZ19118.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Psychrobacter arcticus 273-4]
Length = 377
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 71/341 (20%), Positives = 132/341 (38%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ N + M +V + K+ + + W P EV + D +
Sbjct: 8 QTPNNALTEPMFFGNPVNVARYDQQKHPIFEQLIEKQLSFFWRPEEVDVSRDRMDY---G 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L+ E+ + NL + +S+ + + + +S PE ++ F E +HS ++
Sbjct: 65 NLSSHEQHIFISNLKYQTLLDSIQGRSPNVVLLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL----------------SSPSFTT 176
+II ++ D +F+ + I +A +Y L + T
Sbjct: 125 HIIRNIINDPAIVFDDIMQNEHILGRAADIAKYYDDLYYSSSLYNLYGAGTHTINGKQIT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ ++ L + V E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VDLKSLKKQLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++I KE ++S + +A E +A G +GLN
Sbjct: 245 GTQHILNLMRIGRDDPEMVDIAKECYEESIEIFRKAAEQEKEWAGYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK 331
QY+++I N R +GL F ++ NP PW++ +
Sbjct: 305 LCQYIEYITNLRMEAVGLPVAFPKSKSNPIPWINTWLSSDN 345
>gi|324525159|gb|ADY48515.1| Ribonucleoside-diphosphate reductase small chain [Ascaris suum]
Length = 240
Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 70/252 (27%), Positives = 106/252 (42%), Gaps = 26/252 (10%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+ +L + P+KY W Y +A + W E+ + D A W+ LTD ER
Sbjct: 9 SDEPLLAENPSRFVIFPIKYHDIWAFYKNAVASFWTADEIDLSRDYADWE---KLTDGER 65
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+ + PE R + Q E VHS + +I +
Sbjct: 66 FFISRVLSFFAASDGIVNENLTGRFSTEVQVPEARFFYGFQIMMEGVHSEMYSKMIEAYI 125
Query: 140 LDEGEL---FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D E F+ + I KA+WAL++ D + F L F V
Sbjct: 126 KDPKEQMVHFDAIHQFECIKKKADWALRWID------------DRNSPFPVRLIAFAAV- 172
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG+ F FA I L + M G+ + I RDE LH +F + ++ K
Sbjct: 173 EGIMFSGSFAAIFWLKKRGVMKGLTHSNELISRDEGLHRDFACLLYK-------YIKHKP 225
Query: 257 FQQKSRTMLHEA 268
Q++ ++ EA
Sbjct: 226 SQEQVYEIIKEA 237
>gi|325066257|ref|ZP_08124930.1| Ribonucleoside-diphosphate reductase [Actinomyces oris K20]
Length = 324
Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 67/333 (20%), Positives = 122/333 (36%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +D+ W + L + E+ M R
Sbjct: 15 NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P L AF E+VH+ ++ I ++L E F
Sbjct: 69 TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y + + V + E FY+GF
Sbjct: 129 WSEENANLQRKARIILDYYRGDD---------------PEKRKVASTMLESFLFYSGFYA 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + E+ E + + +L E
Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQAELKDYTFELLME 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E Y + +GL ++++++ AN+ +G E LF NP S
Sbjct: 234 LYDNEEQYTEDLY--DELGLT-EDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
+ + +FF + Y G WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 323
>gi|284009345|emb|CBA76525.1| ribonucleoside-diphosphate reductase 1, beta subunit [Arsenophonus
nasoniae]
Length = 378
Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 65/336 (19%), Positives = 130/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P E+ + D ++
Sbjct: 10 QTKNDQLQEPMFFGQPVNVARYDQQKYPIFEQLIEKQLSFFWRPEEIDVSRDRIDYQ--- 66
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 67 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 126
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFV 191
+II ++ + +F+ I +A Y L + + + +
Sbjct: 127 HIIRNIVNEPSIIFDDIVTNNEILKRAKDISAYYDDLIELTSYYHLLGEGSHTINGKSVI 186
Query: 192 FYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 187 ISLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 246
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ KE ++ + +A E +A G +GLN
Sbjct: 247 GTQHMLNLMRSGQDDPEMAIIAKECEEACYRLFVQAAEQEKEWAEYLFSGGSMIGLNKDI 306
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 307 LCQYIEYITNIRMQAVGLKLPFETRSNPIPWINAWL 342
>gi|91775577|ref|YP_545333.1| ribonucleotide-diphosphate reductase subunit beta [Methylobacillus
flagellatus KT]
gi|91709564|gb|ABE49492.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Methylobacillus flagellatus KT]
Length = 377
Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats.
Identities = 73/334 (21%), Positives = 130/334 (38%), Gaps = 26/334 (7%)
Query: 21 DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ M + +V + KY + + W P EV + D ++ GL + E+
Sbjct: 15 KEPMFFGQPVNVARYDQQKYPVFEKLIEKQLSFFWRPEEVDVSQDRIDYQ---GLPEHEK 71
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
+ NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II ++
Sbjct: 72 HIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWVETWAFSETIHSRSYTHIIRNIV 131
Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSF----------------TTGTKDADQ 183
D +F+ +I A+A+ Y L + T +
Sbjct: 132 SDPALIFDDIVRNENIVARASDISAYYDDLIHYTMLYSQLGKGDHVINGETKTVNLRELK 191
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ L + + E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 192 KLLYLCLMSVNILEAIRFYVSFACSFAFAERKVMEGNAKIIRLIARDEALHLTGTQHMLN 251
Query: 244 QIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
++ E Q + M A E +A G +GLN QY+++
Sbjct: 252 IMRSGQDDPEFAGIASELQDECFEMFKRAAEQEKKWADYLFKDGSMIGLNRDILCQYVEY 311
Query: 299 IANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK 331
I N R +GL F + NP PW++ +
Sbjct: 312 ITNNRMASVGLSAAFPNAKNNPIPWINTWLASDT 345
>gi|152997008|ref|YP_001341843.1| ribonucleotide-diphosphate reductase subunit beta [Marinomonas sp.
MWYL1]
gi|150837932|gb|ABR71908.1| Ribonucleoside-diphosphate reductase [Marinomonas sp. MWYL1]
Length = 377
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 74/333 (22%), Positives = 132/333 (39%), Gaps = 26/333 (7%)
Query: 18 NVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ + M +V + K+ + + W P EV + D ++ L +
Sbjct: 12 DSTKEPMFFGENVNVARYDQQKHPIFEKLIEKQLSFFWRPEEVDLSTDRKDFQ---RLEE 68
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II
Sbjct: 69 HEQHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIR 128
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEFLQDL 189
++ D ++F+ IT +A+ +Y L T +
Sbjct: 129 NIVNDPTKIFDDIVTNEEITKRADSVSKYYDRLIEMVNLYNTMGMGTFDVPGRGSIEISM 188
Query: 190 ----------FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
V E + FY FA + M G A+ + I RDE+LHL
Sbjct: 189 PKLKKALYLTIASVNVLEAIRFYVSFACSFAFAERTLMEGNAKIIKLIARDEALHLTGTQ 248
Query: 240 DVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
++N + ++P + E Q + R + EA E +A G +GLNA Q
Sbjct: 249 HMLNLMASGKDDPEMAVIAAECQDEVRQIFIEAAEQEKEWATYLFKDGSMIGLNAQILGQ 308
Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
Y+++I N R +GLE F NP PW++ +
Sbjct: 309 YVEYITNVRMQAVGLETCFATKHNPIPWINAWL 341
>gi|329945141|ref|ZP_08293009.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
oral taxon 170 str. F0386]
gi|328529340|gb|EGF56255.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
oral taxon 170 str. F0386]
Length = 324
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 67/333 (20%), Positives = 122/333 (36%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +D+ W + L + E+ M R
Sbjct: 15 NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P L AF E+VH+ ++ I ++L E F
Sbjct: 69 TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y + + V + E FY+GF
Sbjct: 129 WSEENENLQRKARIILDYYRGDD---------------PEKRKVASTMLESFLFYSGFYA 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + E+ E + + +L E
Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQAELKDYTFELLME 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E Y + +GL ++++++ AN+ +G E LF NP S
Sbjct: 234 LYDNEEQYTEDLY--DELGLT-EDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
+ + +FF + Y G WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 323
>gi|326772780|ref|ZP_08232064.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
viscosus C505]
gi|326637412|gb|EGE38314.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
viscosus C505]
Length = 325
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 67/333 (20%), Positives = 123/333 (36%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +D+ W + L + E+ M R
Sbjct: 16 NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 69
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P L AF E+VH+ ++ I ++L E F
Sbjct: 70 TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 129
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y + + V + E FY+GF
Sbjct: 130 WSEENANLQRKARIILDYYRGDD---------------PEKRKVASTMLESFLFYSGFYA 174
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + E+ +E + + +L E
Sbjct: 175 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQQELKDYTFDLLME 234
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E Y + +GL ++++++ AN+ +G E LF NP S
Sbjct: 235 LYDNEEQYTEDLY--DELGLT-EDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 291
Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
+ + +FF + Y G WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 324
>gi|42543283|pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
gi|42543284|pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
gi|42543506|pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
gi|42543507|pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
Length = 375
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 7 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 64 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWL 339
>gi|320531976|ref|ZP_08032874.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
oral taxon 171 str. F0337]
gi|320135808|gb|EFW27858.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
oral taxon 171 str. F0337]
Length = 324
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 67/333 (20%), Positives = 123/333 (36%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +D+ W + L + E+ M R
Sbjct: 15 NWNRLTDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P L AF E+VH+ ++ I ++L E F
Sbjct: 69 TLLDTIQGTVGAVSLIPDARTPHEEAVLTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y + + V + E FY+GF
Sbjct: 129 WSEENENLQRKARIILDYYRGDD---------------PEKRKVASTMLESFLFYSGFYA 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + E+ +E + + +L E
Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPERQQELKDYTFELLME 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E Y + +GL ++++++ AN+ +G E LF NP S
Sbjct: 234 LYDNEEQYTEDLY--DELGLT-EDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
+ + +FF + Y G WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVMGTAEATQDEDWD 323
>gi|156340310|ref|XP_001620415.1| hypothetical protein NEMVEDRAFT_v1g148226 [Nematostella vectensis]
gi|156205304|gb|EDO28315.1| predicted protein [Nematostella vectensis]
Length = 224
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 58/227 (25%), Positives = 99/227 (43%), Gaps = 20/227 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L D + P+K+ WE Y + W E+ + D+ W + L +DE+
Sbjct: 5 EPILQENKDRFVIFPIKHHDIWEWYKKMEASFWTAEEIDLHQDITDWNT--KLNEDEKYF 62
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+ + E + + Q E +HS T+ +I + D
Sbjct: 63 IKHILAFFAASDGIVNENLAENFVNEVQYAEAKFFYGFQIMMENIHSETYSLLIDTYVKD 122
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
E E LF+ P+I KA WAL++ ++ S + + + EG
Sbjct: 123 EVEKDKLFHAIEVFPAIKRKAEWALKWIESDS---------------FAERLIAFAAVEG 167
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
++F F I L + M G+ + I RDE +H +F + + N
Sbjct: 168 IFFSGAFCSIFWLKKRGLMPGLTFSNELISRDEGVHCDFAVHIHNHH 214
>gi|315126539|ref|YP_004068542.1| ribonucleotide-diphosphate reductase subunit beta
[Pseudoalteromonas sp. SM9913]
gi|315015053|gb|ADT68391.1| ribonucleotide-diphosphate reductase subunit beta
[Pseudoalteromonas sp. SM9913]
Length = 376
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 73/332 (21%), Positives = 136/332 (40%), Gaps = 25/332 (7%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
N + M ++ +V++ KY + + W P EV + D ++ L D
Sbjct: 12 NQMQEPMFFGQTVNVSRYDQQKYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPD 68
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II
Sbjct: 69 HEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPELETWIETWAFSETIHSRSYTHIIR 128
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQEFLQDLFVFYVV 195
++ +F+ I+ +A+ Y L + S + + + V +
Sbjct: 129 NVTQAPELIFDDIVSNDKISERADAVTTYYDDLINSVSLYNLYGEGKHDINGETVVVNLF 188
Query: 196 ---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E + FY FA + M G A+ + I RDE+LHL+
Sbjct: 189 ELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQH 248
Query: 241 VIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
++N Q ++P + + ++++ M +A E +A G +GLN QY
Sbjct: 249 ILNIMQDGKDDPEMAIVAAQCREEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNKHILCQY 308
Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+++I N R IGL F NP PW++ +
Sbjct: 309 VEYITNARMTAIGLPAQFDNNSNPIPWINSWL 340
>gi|290508492|ref|ZP_06547863.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp.
1_1_55]
gi|289777886|gb|EFD85883.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella sp.
1_1_55]
Length = 405
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 71/329 (21%), Positives = 134/329 (40%), Gaps = 27/329 (8%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M + +V + KY + + W P EV + D ++ L + E+
Sbjct: 45 EPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKH 101
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II ++
Sbjct: 102 IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVN 161
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFTTGTKDADQ 183
D +F+ I +A Y +L + T ++ +
Sbjct: 162 DPATVFDDIVTNEQIQKRAEGISHYYDSLIEMTSYWHLLGEGTHTVNGKTVTVNLRELKK 221
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ L + E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 222 KLYLCLMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLTGTQHMLN 280
Query: 244 --QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
+ ++P + +E +Q+ + A E +A G +GLN QY+++
Sbjct: 281 LLRSGSDDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFRDGSMIGLNKDILCQYVEY 340
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVI 327
I N R +GL+ F+ NP PW++ +
Sbjct: 341 ITNIRMQAVGLDLPFQTRSNPIPWINTWL 369
>gi|309379219|emb|CBX22176.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 384
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 71/343 (20%), Positives = 136/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 14 PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 71 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 130
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKLV 190
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
++ ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 191 NVSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ +E Q++ + +A E +A G +GLN
Sbjct: 250 LTGTQHMLNLMRSGVDDPEMAEIAEELQEECFKLFKKAAEQEKEWAAYLFKDGSMIGLNK 309
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 352
>gi|310639978|ref|YP_003944736.1| ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
polymyxa SC2]
gi|309244928|gb|ADO54495.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
polymyxa SC2]
Length = 343
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 80/350 (22%), Positives = 152/350 (43%), Gaps = 20/350 (5%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
L I E N + + S + ++ ++ Y NHW+P E+PM D +
Sbjct: 3 LQKIFNTEAP-NRSTRIIEGENSGILNWNDIRMPHMYKLYKVLLLNHWIPDEIPMSKDAS 61
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ L +E+ K N+G A +S+ V + R+ ++ +E V
Sbjct: 62 QF---PMLDAEEQRTFKINIGLLAVLDSMQT-MFVGDVKRYFTDSSLEAISAIIGQQEVV 117
Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ Y+++SL ++ E+F ++ P + + + Q + + +
Sbjct: 118 HNQSYSYVLSSLVSEQEQKEIFEYWKNDPVLLERNTFISAIYQEFRD--------EQNPQ 169
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V ++ EG++FY+ FA +L R KM+ ++ YI RDE+ H F +V Q
Sbjct: 170 TFFQAMVADLILEGIFFYSTFAFFYNLARDQKMMATSQMISYIQRDENQHCYFFAEVFKQ 229
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ + P L TKE M++ A LE +AH T+ K G++ Y++++AN R
Sbjct: 230 LLADFPELNTKENMDYVYRMINRAVELETNWAHYTL-KEVRGIDLNELSDYIKYMANMRL 288
Query: 305 HQIGLEPLFK-YTENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAELK 350
+G++ ++ N PW S+ + +FFE + Y + +
Sbjct: 289 RLLGMDKAYEGVDINSMPWIKPFSDEALNATKTDFFEAKSRNYGKVGDDN 338
>gi|332534563|ref|ZP_08410398.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
[Pseudoalteromonas haloplanktis ANT/505]
gi|332035983|gb|EGI72462.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
[Pseudoalteromonas haloplanktis ANT/505]
Length = 376
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 73/332 (21%), Positives = 136/332 (40%), Gaps = 25/332 (7%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
N + M ++ +V++ KY + + W P EV + D ++ L D
Sbjct: 12 NQMQEPMFFGQTVNVSRYDQQKYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPD 68
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II
Sbjct: 69 HEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWAFSETIHSRSYTHIIR 128
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQEFLQDLFVFYVV 195
++ +F+ I+ +A+ +Y L + S + E + +
Sbjct: 129 NVTQAPELIFDDIVSNDKISERADAVTKYYDDLINSVSLYNLYGEGKHEINGKTVIINLF 188
Query: 196 ---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E + FY FA + M G A+ + I RDE+LHL+
Sbjct: 189 ELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQH 248
Query: 241 VIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
++N Q ++P + + + ++ M +A E +A G +GLN QY
Sbjct: 249 ILNIMQDGKDDPEMAIVAAQCRDEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNKHILCQY 308
Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+++I N R IGL F+ NP PW++ +
Sbjct: 309 VEYITNARMTAIGLPAQFENNSNPIPWINSWL 340
>gi|226327851|ref|ZP_03803369.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198]
gi|225203555|gb|EEG85909.1| hypothetical protein PROPEN_01732 [Proteus penneri ATCC 35198]
Length = 376
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 75/334 (22%), Positives = 136/334 (40%), Gaps = 25/334 (7%)
Query: 16 RVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+ + + M + +V + KY + + W P EV + D + N L
Sbjct: 10 KNDQLQEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NAL 66
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++ +I
Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHI 126
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------TGT 178
I ++ D +F+ E I +A Y L + + T
Sbjct: 127 IRNIVNDPSVVFDDIVENEEILKRARDISSYYDELINLTNLYHMYGEGEHQVKGKTVHVT 186
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 187 LRKLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGT 246
Query: 239 IDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
++N + ++P + +E +Q+ + EA E +A +G +GLN
Sbjct: 247 QHMLNLLRSGQDDPEMAEIAEECEQECYDLFVEAAEQEKEWAEYLFSEGSMIGLNKDILC 306
Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ FK NP PW++ +
Sbjct: 307 QYVEYITNIRMQAVGLKLPFKARSNPIPWINAWL 340
>gi|33358114|pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
gi|33358115|pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
gi|33358116|pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-D84e Mutant
Containing Oxo-Bridged Diferric Cluster
gi|33358117|pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-D84e Mutant
Containing Oxo-Bridged Diferric Cluster
gi|42543285|pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
gi|42543286|pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
Length = 375
Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats.
Identities = 72/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 7 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + ES+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 64 ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWL 339
>gi|162139926|ref|YP_339935.2| ribonucleotide-diphosphate reductase subunit beta
[Pseudoalteromonas haloplanktis TAC125]
Length = 376
Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats.
Identities = 74/332 (22%), Positives = 136/332 (40%), Gaps = 25/332 (7%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
N ++ M ++ +V++ KY + + W P EV + D ++ L D
Sbjct: 12 NQMEEPMFFGQTVNVSRYDQQKYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPD 68
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II
Sbjct: 69 HEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSLPELETWIETWAFSETIHSRSYTHIIR 128
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQEFLQDLFVFYVV 195
++ +F+ I+ +A+ +Y L + S + E V +
Sbjct: 129 NVTQAPELIFDDIVSNDKISERADAVTKYYDDLINSVSLYNLYGEGKHEINGKSVVVNLF 188
Query: 196 ---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E + FY FA + M G A+ + I RDE+LHL+
Sbjct: 189 ELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQH 248
Query: 241 VIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
++N Q ++P + + + ++ M +A E +A G +GLN QY
Sbjct: 249 ILNIMQDGKDDPEMAIVAAQCRDEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNKHILCQY 308
Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+++I N R IG FK NP PW++ +
Sbjct: 309 VEYITNARMTAIGFPAQFKNNSNPIPWINSWL 340
>gi|119472403|ref|ZP_01614521.1| ribonucleotide-diphosphate reductase beta subunit [Alteromonadales
bacterium TW-7]
gi|119444925|gb|EAW26223.1| ribonucleotide-diphosphate reductase beta subunit [Alteromonadales
bacterium TW-7]
Length = 376
Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats.
Identities = 73/332 (21%), Positives = 135/332 (40%), Gaps = 25/332 (7%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
N + M ++ +V++ KY + + W P EV + D ++ L +
Sbjct: 12 NQMQEPMFFGQTVNVSRYDQQKYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPE 68
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II
Sbjct: 69 HEKHIFLSNLKYQTLLDSVQGRSPNVALLPIVSIPELETWIETWAFSETIHSRSYTHIIR 128
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQEFLQDLFVFYVV 195
++ +F+ I+ +A+ Y L + S + E V +
Sbjct: 129 NVTQSPELIFDDIVSNDKISERADAVTTYYDDLINSVSLYNLYGEGKHEINGKTVVVNLF 188
Query: 196 ---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E + FY FA + M G A+ + I RDE+LHL+
Sbjct: 189 ELKKKLYLAMMSVNILEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQH 248
Query: 241 VIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
++N Q ++P + + + ++ M +A E +A G +GLN QY
Sbjct: 249 ILNIMQDGKDDPEMAIVAAQCRDEAIKMFVQAAEQEKEWAEYLFKDGSMIGLNKHILCQY 308
Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+++I N R IGL F+ NP PW++ +
Sbjct: 309 VEYITNARMTAIGLPAQFENNSNPIPWINSWL 340
>gi|237785987|ref|YP_002906692.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758899|gb|ACR18149.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
kroppenstedtii DSM 44385]
Length = 336
Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats.
Identities = 68/370 (18%), Positives = 133/370 (35%), Gaps = 53/370 (14%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
M ++P++ G N D+ + A D N + K W+ N W+P +VP
Sbjct: 1 MKKTNAITPVRWGTNGNN-HDRPI--AAIDWNTIPDDKDQEVWD---RLTGNFWLPEKVP 54
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ +D+ W + L + E+ R +++ +++ P
Sbjct: 55 LSNDIKSWGT---LNELEQRTTMRVFTGLTMLDTIQGTVGAVSLIPDALTPHEEAVYTNI 111
Query: 121 AFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
AF E+VH+ ++ I +L + F E ++ KA L Y +
Sbjct: 112 AFMESVHARSYSSIFMTLSSTPEINDAFRWSEENENLQDKARIVLDYYE----------- 160
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
D F + + + E FY+GF + K+ A+ + I+RDE++H +
Sbjct: 161 --GDNPFKRKVA--STLLESFLFYSGFYLPMYWSSHGKLTNTADVIRLIIRDEAVHGYYI 216
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ + ++ + +L+E E Y + +G ++++++
Sbjct: 217 GYKYQRGQEALTQSERDGLKEYTFDLLYELYDNETQYTEDLY--DELGWT-EDVKRFLRY 273
Query: 299 IANRRCHQIGLEPLFKYTE-----------NPFPWMSEVIDLKKEKNFFETRVTEYQQG- 346
AN+ + +G E LF E NP + +FF + Y G
Sbjct: 274 NANKALNNLGYEALFPADETRVSPAIISSLNP--------GADENHDFFSGSGSSYVIGK 325
Query: 347 ----AELKWD 352
+ WD
Sbjct: 326 AESTTDEDWD 335
>gi|227496669|ref|ZP_03926945.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
urogenitalis DSM 15434]
gi|226833817|gb|EEH66200.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
urogenitalis DSM 15434]
Length = 324
Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats.
Identities = 66/333 (19%), Positives = 122/333 (36%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L+ K W+ N W+P +VP+ +D+ W + L + E+ M R
Sbjct: 15 NWNRLVDDKDLEVWD---RLTGNFWLPEKVPLSNDVQSWAT---LNEAEKNMTTRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L E F
Sbjct: 69 TLLDTIQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHARSYSSIFSTLISTAEIDEAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y + + V + E FY+GF
Sbjct: 129 WSEENENLQRKAKIILDYYRGDD---------------PEKRKVASTMLESFLFYSGFYA 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + E+ E + + +L E
Sbjct: 174 PMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVRESSPQRQAELKDYTFDLLME 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E Y + +GL ++++++ AN+ +G E LF NP S
Sbjct: 234 LYDNEEQYTEDLY--DELGLT-EDVKKFLRYNANKALMNLGYEALFPADAVDVNPAILAS 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
+ + +FF + Y G WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGTAEATEDEDWD 323
>gi|261400675|ref|ZP_05986800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
lactamica ATCC 23970]
gi|269209585|gb|EEZ76040.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
lactamica ATCC 23970]
Length = 377
Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats.
Identities = 71/342 (20%), Positives = 132/342 (38%), Gaps = 26/342 (7%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 7 PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 64 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLF 190
+II ++ D +F+ E ITA+A Y L + + + L
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKLV 183
Query: 191 VFYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+ V E + FY FA + M G A+ + I RDE+LHL
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ E Q + + +A E +A G +GLN
Sbjct: 244 TSTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNKE 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 304 ILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 345
>gi|221134587|ref|ZP_03560892.1| ribonucleotide-diphosphate reductase subunit beta [Glaciecola sp.
HTCC2999]
Length = 376
Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats.
Identities = 74/332 (22%), Positives = 128/332 (38%), Gaps = 25/332 (7%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M +V + K+ + + W P EV + D ++ GL+D E+
Sbjct: 16 EPMFFGNPVNVARYDQQKHAIFEKLIEKQISFFWRPEEVDVSKDRMDFQ---GLSDAEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + +A+ +S PE ++ +F E +HS ++ +I+ +L
Sbjct: 73 IFISNLKYQTLLDSVQGRSPNIALLPIVSLPELETWIETWSFFETIHSRSYTHILRNLFT 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA--------DQEFLQD---- 188
D +F E I +A +Y L + T+
Sbjct: 133 DPSNIFEDIVENEEIKRRAADISKYYDDLIFATQLWQTQGEGTHEVNGETHIINMRELKK 192
Query: 189 ----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
E + FY FA + M G ++ + I RDE+LHL V+N
Sbjct: 193 KLYLCMNSVNALEAIRFYVSFACTFAFAERELMEGNSKIIRLIARDENLHLTSTQHVLNL 252
Query: 245 IKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
KE +Q++R + A E +A G +GLN Y+++I
Sbjct: 253 WAKGKDDPEMAEIAKECEQEARDIFLNAVQQEKEWAAFLFNNGSMIGLNEEILCSYVEYI 312
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
AN+R IGL F + NP PWM+ ++
Sbjct: 313 ANQRMAAIGLGQPFDVSSNPLPWMNNYLNSDN 344
>gi|15616797|ref|NP_240009.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
aphidicola str. APS (Acyrthosiphon pisum)]
gi|219681552|ref|YP_002467937.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
aphidicola str. 5A (Acyrthosiphon pisum)]
gi|219682108|ref|YP_002468492.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
aphidicola str. Tuc7 (Acyrthosiphon pisum)]
gi|257471235|ref|ZP_05635234.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
aphidicola str. LSR1 (Acyrthosiphon pisum)]
gi|11134533|sp|P57275|RIR2_BUCAI RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|25285834|pir||G84950 ribonucleoside-diphosphate reductase (EC 1.17.4.1) nrdB [imported]
- Buchnera sp. (strain APS)
gi|10038860|dbj|BAB12895.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera
aphidicola str. APS (Acyrthosiphon pisum)]
gi|219621841|gb|ACL29997.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
aphidicola str. Tuc7 (Acyrthosiphon pisum)]
gi|219624395|gb|ACL30550.1| ribonucleotide-diphosphate reductase beta subunit [Buchnera
aphidicola str. 5A (Acyrthosiphon pisum)]
gi|311087074|gb|ADP67154.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
aphidicola str. JF99 (Acyrthosiphon pisum)]
Length = 376
Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats.
Identities = 71/340 (20%), Positives = 132/340 (38%), Gaps = 25/340 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ N + M + ++ + KY + + W P E+ + D ++
Sbjct: 8 KKKNNQLKEPMFFGQPVNIARYDQQKYKIFEQLIEKQLSFFWRPEEIDLSRDRIDFQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D+E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 65 NLPDNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIISIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFV 191
+II ++ +F+ +I +A Y L + + + +
Sbjct: 125 HIIRNIVNCPSLVFDDIISNKNIYDRAQNISIYYDELINLTSYWHLLGEGIHLINGKKIH 184
Query: 192 FYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ V E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 INLRFLKKRLYLCLISVNVLEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244
Query: 237 FGIDV----INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+ N EN E ++++ + A E +A G +GLN
Sbjct: 245 GTQHILNLLSNIKNNENMEDVVLECKEEAINIFISAAQQEKKWASYLFKSGSMLGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
QY+++I N R H IG + FK NP PW+++ +
Sbjct: 305 LCQYIEYITNIRMHAIGFKMPFKKQSNPIPWINDWLTSDN 344
>gi|161582009|ref|NP_230900.2| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae
O1 biovar El Tor str. N16961]
gi|255745652|ref|ZP_05419600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholera CIRS 101]
gi|262159072|ref|ZP_06030184.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae INDRE 91/1]
gi|262169430|ref|ZP_06037122.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae RC27]
gi|262191406|ref|ZP_06049594.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae CT 5369-93]
gi|255736727|gb|EET92124.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholera CIRS 101]
gi|262022243|gb|EEY40952.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae RC27]
gi|262029257|gb|EEY47909.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae INDRE 91/1]
gi|262032695|gb|EEY51245.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae CT 5369-93]
gi|327483944|gb|AEA78351.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Vibrio cholerae LMA3894-4]
Length = 377
Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats.
Identities = 76/341 (22%), Positives = 136/341 (39%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M + +V + KY + + W P EV + D +
Sbjct: 8 QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------T 176
+II ++ D +F+ E I +A Y L + T
Sbjct: 125 HIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIELTNDYHRYGEGQHQINGETIT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLKELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ +E +Q+S + EA E +A G +GLN
Sbjct: 245 GTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
QY+++I N R +GLEP + T NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLEPAYPAATNNPIPWINAWLSSDN 345
>gi|254493923|ref|ZP_05107094.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae 1291]
gi|260440303|ref|ZP_05794119.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae DGI2]
gi|268594982|ref|ZP_06129149.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
gonorrhoeae 35/02]
gi|268596639|ref|ZP_06130806.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
gonorrhoeae FA19]
gi|268599210|ref|ZP_06133377.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae MS11]
gi|268601557|ref|ZP_06135724.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID18]
gi|268603896|ref|ZP_06138063.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID1]
gi|268682359|ref|ZP_06149221.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID332]
gi|268684517|ref|ZP_06151379.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
SK-92-679]
gi|268686827|ref|ZP_06153689.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
SK-93-1035]
gi|291043595|ref|ZP_06569311.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
gonorrhoeae DGI2]
gi|293398906|ref|ZP_06643071.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
gonorrhoeae F62]
gi|59717937|gb|AAW89342.1| putative ribonucleoside diphosphate reductase I beta chain
[Neisseria gonorrhoeae FA 1090]
gi|226512963|gb|EEH62308.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae 1291]
gi|268548371|gb|EEZ43789.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
gonorrhoeae 35/02]
gi|268550427|gb|EEZ45446.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
gonorrhoeae FA19]
gi|268583341|gb|EEZ48017.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae MS11]
gi|268585688|gb|EEZ50364.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID18]
gi|268588027|gb|EEZ52703.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID1]
gi|268622643|gb|EEZ55043.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae PID332]
gi|268624801|gb|EEZ57201.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
SK-92-679]
gi|268627111|gb|EEZ59511.1| ribonucleoside-diphosphate reductase [Neisseria gonorrhoeae
SK-93-1035]
gi|291012058|gb|EFE04047.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
gonorrhoeae DGI2]
gi|291610320|gb|EFF39430.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
gonorrhoeae F62]
Length = 384
Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 134/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 14 PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 71 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWVETWSFSETIHSRSY 130
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPV 190
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T + ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 191 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 250 LTGTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 309
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 352
>gi|161572976|ref|YP_207754.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae FA 1090]
gi|194098862|ref|YP_002001926.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae NCCP11945]
gi|239999147|ref|ZP_04719071.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae 35/02]
gi|240013945|ref|ZP_04720858.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae DGI18]
gi|240016387|ref|ZP_04722927.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae FA6140]
gi|240080506|ref|ZP_04725049.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae FA19]
gi|240113126|ref|ZP_04727616.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae MS11]
gi|240115882|ref|ZP_04729944.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae PID18]
gi|240118180|ref|ZP_04732242.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae PID1]
gi|240121514|ref|ZP_04734476.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae PID24-1]
gi|240123728|ref|ZP_04736684.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae PID332]
gi|240125919|ref|ZP_04738805.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae SK-92-679]
gi|240128431|ref|ZP_04741092.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae SK-93-1035]
gi|193934152|gb|ACF29976.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
gonorrhoeae NCCP11945]
Length = 377
Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 134/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 7 PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 64 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWVETWSFSETIHSRSY 123
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPV 183
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T + ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 243 LTGTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 302
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 303 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 345
>gi|251792578|ref|YP_003007304.1| ribonucleoside-diphosphate reductase subunit beta [Aggregatibacter
aphrophilus NJ8700]
gi|247533971|gb|ACS97217.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
aphrophilus NJ8700]
Length = 329
Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats.
Identities = 66/320 (20%), Positives = 133/320 (41%), Gaps = 19/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
++ P +Y E + +++W+ TE D+ +++ ++D ER +I + + +
Sbjct: 13 RFEIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDFRTH--ISDVERAVITKTMLAIS 70
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +Y + PE E H + +++ LGL+ E+F R
Sbjct: 71 QIEVSV-KRFWGNLYNYFPKPEIEDVGGSFLESEIRHKDAYSFLLEKLGLN--EMFLNVR 127
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ +I A+ + + + + Q+F+ L +F + E + ++ F ++S
Sbjct: 128 QYKAIMARIEYMEAFMRR---------KDVSQQDFVLSLIMFSLFVEHISLFSQFVIMMS 178
Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N GI+ + ++E +H FGI + + ++ E P L+T F + + + +A
Sbjct: 179 FNKHKNLFKGISNAIEATSKEEEIHGRFGITLYSILREEQPELFTDAFFTELKELADQAF 238
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
E + G + L+ + E Y+ N +GLEP + W
Sbjct: 239 TAEKEILNWIFEDGELDFLSKATVENYIANRYNNSLQALGLEPAYNINPEQLKETEWFDI 298
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
I KE +FF R T+Y +
Sbjct: 299 EILSTKETDFFNKRSTDYSK 318
>gi|229505158|ref|ZP_04394668.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae BX 330286]
gi|229511170|ref|ZP_04400649.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae B33]
gi|229515628|ref|ZP_04405087.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae TMA 21]
gi|229518289|ref|ZP_04407733.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae RC9]
gi|229521368|ref|ZP_04410787.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae TM 11079-80]
gi|229525854|ref|ZP_04415259.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae bv. albensis VL426]
gi|229529665|ref|ZP_04419055.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae 12129(1)]
gi|229608178|ref|YP_002878826.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae
MJ-1236]
gi|229333439|gb|EEN98925.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae 12129(1)]
gi|229339435|gb|EEO04452.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae bv. albensis VL426]
gi|229341466|gb|EEO06469.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae TM 11079-80]
gi|229345004|gb|EEO09978.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae RC9]
gi|229347397|gb|EEO12357.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae TMA 21]
gi|229351135|gb|EEO16076.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae B33]
gi|229357381|gb|EEO22298.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae BX 330286]
gi|229370833|gb|ACQ61256.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
cholerae MJ-1236]
Length = 381
Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats.
Identities = 76/341 (22%), Positives = 136/341 (39%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M + +V + KY + + W P EV + D +
Sbjct: 12 QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 68
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 69 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 128
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------T 176
+II ++ D +F+ E I +A Y L + T
Sbjct: 129 HIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIELTNDYHRYGEGQHQINGETIT 188
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 189 VSLKELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 248
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ +E +Q+S + EA E +A G +GLN
Sbjct: 249 GTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 308
Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
QY+++I N R +GLEP + T NP PW++ +
Sbjct: 309 LCQYVEYITNIRMQAVGLEPAYPAATNNPIPWINAWLSSDN 349
>gi|297250515|ref|ZP_06864465.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
polysaccharea ATCC 43768]
gi|296838835|gb|EFH22773.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
polysaccharea ATCC 43768]
Length = 377
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 134/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 7 PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 64 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPV 183
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T + ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 243 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 302
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 303 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 345
>gi|241760495|ref|ZP_04758588.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
flavescens SK114]
gi|241318999|gb|EER55501.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
flavescens SK114]
Length = 377
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 70/341 (20%), Positives = 131/341 (38%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 8 KTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 65 NLPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFV 191
+II ++ D +F+ + I A+A Y L + + + L
Sbjct: 125 HIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYTQYYNLLGEGSHNIGGKLVT 184
Query: 192 FYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ V E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ E Q + + +A E +A G +GLN
Sbjct: 245 STQHMLNLMRAGADDPEMAEIAVELQDECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKEI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ T+NP PW++ +
Sbjct: 305 LAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 345
>gi|282600304|ref|ZP_05973774.2| ribonucleoside-diphosphate reductase, beta subunit [Providencia
rustigianii DSM 4541]
gi|282565783|gb|EFB71318.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
rustigianii DSM 4541]
Length = 380
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 73/336 (21%), Positives = 136/336 (40%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M + +V + KY + + W P EV + D + N
Sbjct: 12 QKKNDQLQEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---N 68
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 69 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYT 128
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQEFLQDLFV 191
+II ++ D +F+ E I +A Y L ++ + F V
Sbjct: 129 HIIRNIVNDPAIIFDDIVENEEILKRAKDISAYYDKLIEMTNYYHMFGEGTHTFGGKQIV 188
Query: 192 FYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 189 VSLRELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 248
Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + E +++ + +A E +A +G +GLN
Sbjct: 249 GTQHMLNLLRSGQDDPEMAEIAAECEEQCYQLFVDAAEQEKEWAEYLFSEGSMIGLNKEI 308
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 309 LCQYVEYITNIRMQAVGLKLPFEARSNPIPWINAWL 344
>gi|121590730|ref|ZP_01678061.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
2740-80]
gi|147674333|ref|YP_001216820.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio cholerae
O395]
gi|153212320|ref|ZP_01948108.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
1587]
gi|153801907|ref|ZP_01956493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
MZO-3]
gi|153823603|ref|ZP_01976270.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
B33]
gi|153827294|ref|ZP_01979961.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
MZO-2]
gi|153829732|ref|ZP_01982399.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
623-39]
gi|227081427|ref|YP_002809978.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
M66-2]
gi|254291706|ref|ZP_04962493.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
AM-19226]
gi|254848379|ref|ZP_05237729.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10]
gi|297578847|ref|ZP_06940775.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae
RC385]
gi|298498653|ref|ZP_07008460.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
MAK 757]
gi|9655738|gb|AAF94414.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
O1 biovar El Tor str. N16961]
gi|121547411|gb|EAX57522.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
2740-80]
gi|124116698|gb|EAY35518.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
1587]
gi|124122552|gb|EAY41295.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
MZO-3]
gi|126518882|gb|EAZ76105.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
B33]
gi|146316216|gb|ABQ20755.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
O395]
gi|148874766|gb|EDL72901.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
623-39]
gi|149738785|gb|EDM53127.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
MZO-2]
gi|150422390|gb|EDN14350.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
AM-19226]
gi|227009315|gb|ACP05527.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
M66-2]
gi|227013172|gb|ACP09382.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
O395]
gi|254844084|gb|EET22498.1| ribonucleoside-diphosphate reductase [Vibrio cholerae MO10]
gi|297536441|gb|EFH75274.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio cholerae
RC385]
gi|297542986|gb|EFH79036.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio cholerae
MAK 757]
Length = 389
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 76/341 (22%), Positives = 136/341 (39%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M + +V + KY + + W P EV + D +
Sbjct: 20 QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 76
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 77 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 136
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------T 176
+II ++ D +F+ E I +A Y L + T
Sbjct: 137 HIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIELTNDYHRYGEGQHQINGETIT 196
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 197 VSLKELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 256
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ +E +Q+S + EA E +A G +GLN
Sbjct: 257 GTQHMLNLLRNGMDDFTFLQVAEECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 316
Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
QY+++I N R +GLEP + T NP PW++ +
Sbjct: 317 LCQYVEYITNIRMQAVGLEPAYPAATNNPIPWINAWLSSDN 357
>gi|218768312|ref|YP_002342824.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
meningitidis Z2491]
gi|121052320|emb|CAM08650.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
meningitidis Z2491]
gi|261392428|emb|CAX49973.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
reductase) [Neisseria meningitidis 8013]
Length = 377
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + ++ M + +V + KY + + W P E+ + D +
Sbjct: 7 PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 64 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPI 183
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T + ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 243 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 302
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 303 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 345
>gi|262171721|ref|ZP_06039399.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
mimicus MB-451]
gi|261892797|gb|EEY38783.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
mimicus MB-451]
Length = 377
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 74/342 (21%), Positives = 136/342 (39%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M + +V + KY + + W P EV + D +
Sbjct: 8 QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
+II ++ D +F+ E I +A Y ++ +
Sbjct: 125 HIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVN 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+D ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSMRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+IN ++ +E +Q+S + +A E +A G +GLN
Sbjct: 244 TGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GLEP + NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWINAWLSSDN 345
>gi|319410557|emb|CBY90925.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
reductase) [Neisseria meningitidis WUE 2594]
gi|325208250|gb|ADZ03702.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis NZ-05/33]
Length = 384
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + ++ M + +V + KY + + W P E+ + D +
Sbjct: 14 PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 71 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 130
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPI 190
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T + ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 191 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 250 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 309
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 352
>gi|258624428|ref|ZP_05719375.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
VM603]
gi|258583275|gb|EEW08077.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
VM603]
Length = 381
Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats.
Identities = 74/342 (21%), Positives = 136/342 (39%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M + +V + KY + + W P EV + D +
Sbjct: 12 QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 68
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 69 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 128
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
+II ++ D +F+ E I +A Y ++ +
Sbjct: 129 HIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVN 188
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+D ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 189 VSMRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 247
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+IN ++ +E +Q+S + +A E +A G +GLN
Sbjct: 248 TGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKD 307
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GLEP + NP PW++ +
Sbjct: 308 ILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWINAWLSSDN 349
>gi|332671991|ref|YP_004454999.1| ribonucleoside-diphosphate reductase [Cellulomonas fimi ATCC 484]
gi|332341029|gb|AEE47612.1| Ribonucleoside-diphosphate reductase [Cellulomonas fimi ATCC 484]
Length = 326
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/351 (19%), Positives = 134/351 (38%), Gaps = 37/351 (10%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
++ + D+ + + N+L K W+ N W+P +VP+ +D+ W +
Sbjct: 2 TPTGKLKLIDR---VSAINWNRLEDEKDAEVWD---RLVGNFWLPEKVPVSNDIQSWAT- 54
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
LT++E+ + R +++ +++ P AF E+VH+ ++
Sbjct: 55 --LTEEEKTLTMRVFTGLTLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSY 112
Query: 132 QYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
I ++L E F E ++ KA ++Y + S
Sbjct: 113 SSIFSTLCSTREIDEAFRWSEENVNLQRKAEIVMKYYKGDS---------------PLKR 157
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
V + E FY+GF + K+ A+ + I+RDE++H + + +
Sbjct: 158 KVASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKL 217
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
+E + + +L E E+ Y + VGL ++++++ AN+ +G
Sbjct: 218 SPEERQELKDYTFELLFELYDNEVEYTQDLYDG--VGLT-EDVKKFLRYNANKALMNLGY 274
Query: 310 EPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
E LF E NP + + + +FF + Y G + WD
Sbjct: 275 EALFPRDETDVNPAILSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 325
>gi|332278613|ref|ZP_08391026.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
gi|332100965|gb|EGJ04311.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
Length = 420
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 52 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 108
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 109 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 168
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 169 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 228
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 229 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 287
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 288 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 347
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 348 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 384
>gi|262165506|ref|ZP_06033243.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
mimicus VM223]
gi|262025222|gb|EEY43890.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
mimicus VM223]
Length = 377
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 74/342 (21%), Positives = 136/342 (39%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M + +V + KY + + W P EV + D +
Sbjct: 8 QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
+II ++ D +F+ E I +A Y ++ +
Sbjct: 125 HIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVN 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+D ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 ISMRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+IN ++ +E +Q+S + +A E +A G +GLN
Sbjct: 244 TGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GLEP + NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWINAWLSSDN 345
>gi|290473788|ref|YP_003466662.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus
bovienii SS-2004]
gi|289173095|emb|CBJ79868.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus
bovienii SS-2004]
Length = 376
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 72/334 (21%), Positives = 132/334 (39%), Gaps = 25/334 (7%)
Query: 16 RVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+ N + M + +V + KY + + W P EV + D + N L
Sbjct: 10 KNNQLQEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NAL 66
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++ +I
Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWIETWSFSETIHSRSYTHI 126
Query: 135 ITSLGLDEGELFNMYREVPSITAKAN----------WALQYTQTLSSPSFTTGTKDADQE 184
I ++ D +F+ I +A Y L ++ K+
Sbjct: 127 IRNIVNDPAIVFDDIVANEQILKRAKDISGYYDVLIEMTNYYHQLGEGTYNVAGKNITVS 186
Query: 185 FL------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 187 LRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGT 246
Query: 239 IDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 247 QHMLNLLRSGQDDPEMAEIARECEQQCYDLFVQAAEQEKEWADYLFKDGSMIGLNKDILC 306
Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 307 QYVEYITNIRMQAVGLKLPFEARSNPIPWINAWL 340
>gi|261364564|ref|ZP_05977447.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
mucosa ATCC 25996]
gi|288567131|gb|EFC88691.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
mucosa ATCC 25996]
Length = 384
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/342 (20%), Positives = 137/342 (40%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+++ + + M + +V + KY + + W P E+ + D +
Sbjct: 15 KQKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 71
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 72 NLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 131
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ + I A+A Y L + T
Sbjct: 132 HIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVT 191
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 192 VSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 250
Query: 236 NFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ + E Q + + +A E +A G +GLN
Sbjct: 251 TSTQHMLNLMRAGSDDPEMAEIAVELQDECFELFKKAAEQEKEWAAYLFKDGSMIGLNKE 310
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ T+NP PW++ +
Sbjct: 311 ILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 352
>gi|161353784|ref|NP_274308.2| ribonucleotide-diphosphate reductase subunit beta [Neisseria
meningitidis MC58]
gi|304387414|ref|ZP_07369605.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
meningitidis ATCC 13091]
gi|304338507|gb|EFM04626.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
meningitidis ATCC 13091]
gi|316984078|gb|EFV63056.1| ribonucleoside-diphosphate reductase 1 subunit beta [Neisseria
meningitidis H44/76]
gi|325134468|gb|EGC57113.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis M13399]
gi|325140485|gb|EGC63006.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis CU385]
gi|325144569|gb|EGC66868.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis M01-240013]
gi|325200084|gb|ADY95539.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis H44/76]
gi|325204292|gb|ADY99745.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis M01-240355]
gi|325205936|gb|ADZ01389.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis M04-240196]
Length = 377
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + ++ M + +V + KY + + W P E+ + D +
Sbjct: 7 PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 64 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPV 183
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T + ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 243 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 302
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 303 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 345
>gi|149392653|gb|ABR26129.1| ribonucleoside-diphosphate reductase small chain [Oryza sativa
Indica Group]
Length = 233
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 26/256 (10%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
+ P++Y WE Y A + W EV + D W L+ DER + L FFA+S+
Sbjct: 1 MFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWD--AALSPDERHFVSHVLAFFAASD 58
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYR 150
+V N+ + E R + Q E +HS + ++ + D+ E LF
Sbjct: 59 GIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDDVEKDRLFRAID 118
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
VP++ KA+WA+++ D + F + L + EG++F F I
Sbjct: 119 TVPAVRRKADWAMRWI-------------DGGERFAERLVA-FACVEGIFFSGSFCAIFW 164
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
L + M G+ + I RDE LH +F + + ++ + + + + ++ +A
Sbjct: 165 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLD-------ESRVQEIVADAVD 217
Query: 271 LEIAYAHETMPKGFVG 286
+E + + +P VG
Sbjct: 218 IEREFVCDALPVALVG 233
>gi|257373022|ref|YP_003175796.1| ribonucleotide reductase [Halomicrobium mukohataei DSM 12286]
gi|257167746|gb|ACV49438.1| ribonucleotide reductase [Halomicrobium mukohataei DSM 12286]
Length = 336
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 74/323 (22%), Positives = 141/323 (43%), Gaps = 18/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
QL P +Y E + N++W+ TE D+ +K T E+ +IKR + A
Sbjct: 19 RTQLKPYEYPDVLEYKDAIRNSYWVHTEFNFSGDVQDFKVNT--TPAEKAVIKRTMLAIA 76
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E IY + E + A E H + +++ LG+ E F
Sbjct: 77 QIEV-QVKTFWADIYDEMPKAEVGNVGMTFAESEVRHMDAYSHLLDILGIT--EDFEEVT 133
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+VP+I + ++ +Y + D QE++ L +F E + ++ F + S
Sbjct: 134 DVPAIEERIDYLDEYLEK--------SESDDTQEYVMSLLLFSTFVEHVSLFSQFLIMTS 185
Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ K GIA + ++E +H FG++++ I+ ENP L+ ++F+++ + +A
Sbjct: 186 FDKHEKKFKGIANAVEATSKEEQIHGLFGVELVETIREENPDLFDEDFEEEVQAACQQAF 245
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
E+ +G + L + +++ N+ +G+EP+F+ E+ W E
Sbjct: 246 EAEMKILDWIFGEGELEFLPRAHVDAFLRDRFNQSLENVGVEPIFEPDEDLLEETRWFDE 305
Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
I + K+ +FF R T Y + A+
Sbjct: 306 DIMMTKDNDFFSKRSTTYNKHAQ 328
>gi|255065945|ref|ZP_05317800.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sicca
ATCC 29256]
gi|255049856|gb|EET45320.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sicca
ATCC 29256]
Length = 377
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/342 (20%), Positives = 136/342 (39%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 8 KTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 NLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ + I A+A Y L + T
Sbjct: 125 HIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVT 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ + E Q + + +A E +A G +GLN
Sbjct: 244 TSTQHMLNLMRAGSDDPEMAEIAVELQDECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKE 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ T+NP PW++ +
Sbjct: 304 ILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 345
>gi|7226528|gb|AAF41664.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis MC58]
gi|254670476|emb|CBA06168.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
meningitidis alpha153]
Length = 384
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + ++ M + +V + KY + + W P E+ + D +
Sbjct: 14 PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 71 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 130
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPV 190
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T + ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 191 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 250 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 309
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 352
>gi|258620211|ref|ZP_05715250.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
VM573]
gi|258587569|gb|EEW12279.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio mimicus
VM573]
Length = 381
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 74/342 (21%), Positives = 136/342 (39%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M + +V + KY + + W P EV + D +
Sbjct: 12 QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 68
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 69 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 128
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
+II ++ D +F+ E I +A Y ++ +
Sbjct: 129 HIIRNIVNDPAVVFDDIVENEHIIKRAKDIAHYYDDLIQLTNDYHRFGEGQHQINGETVN 188
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+D ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 189 VSMRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 247
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+IN ++ +E +Q+S + +A E +A G +GLN
Sbjct: 248 TGTQHMINILRNGMDDFTFLQVAEECKQESFDLFKQAAEQEKEWASYLFKDGSMIGLNKD 307
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GLEP + NP PW++ +
Sbjct: 308 ILCQYVEYITNIRMQAVGLEPAYPAAVNNPIPWINAWLSSDN 349
>gi|238895770|ref|YP_002920506.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
pneumoniae NTUH-K2044]
gi|238548088|dbj|BAH64439.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 396
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/329 (21%), Positives = 134/329 (40%), Gaps = 27/329 (8%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M + +V + KY + + W P EV + D ++ L + E+
Sbjct: 36 EPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKH 92
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II ++
Sbjct: 93 IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVN 152
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFTTGTKDADQ 183
D +F+ I +A Y +L + T ++ +
Sbjct: 153 DPATVFDDIVTNEQIQKRAEGISHYYDSLIEMTSYWHLLGEGTHTVNGKTVTVNLRELKK 212
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ L + E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 213 KLYLCLMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLTGTQHMLN 271
Query: 244 --QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
+ ++P + +E +Q+ + A E +A G +GLN QY+++
Sbjct: 272 LLRSGSDDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFRDGSMIGLNKDILCQYVEY 331
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVI 327
I N R +GL+ F+ NP PW++ +
Sbjct: 332 ITNIRMQAVGLDLPFQTRSNPIPWINTWL 360
>gi|298368555|ref|ZP_06979873.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sp.
oral taxon 014 str. F0314]
gi|298282558|gb|EFI24045.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria sp.
oral taxon 014 str. F0314]
Length = 384
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/342 (20%), Positives = 135/342 (39%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 15 KTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 71
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 72 NLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 131
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ + I A+A Y L + T
Sbjct: 132 HIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVT 191
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 192 VSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 250
Query: 236 NFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ E Q + + +A E +A G +GLN
Sbjct: 251 TSTQHMLNLMRAGADDPEMAEIAVELQDECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKE 310
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ T+NP PW++ +
Sbjct: 311 ILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 352
>gi|313668429|ref|YP_004048713.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
lactamica ST-640]
gi|313005891|emb|CBN87347.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
lactamica 020-06]
Length = 377
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 134/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 7 PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 64 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPV 183
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T + ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 243 LTGTQHMLNLMRSGVDDPEMAEIAAELQDECFRLFKKAAEQEKEWAAYLFKDGSMIGLNK 302
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 303 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 345
>gi|76875271|emb|CAI86492.1| ribonucleoside-diphosphate reductase 1, beta subunit
[Pseudoalteromonas haloplanktis TAC125]
Length = 359
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/311 (22%), Positives = 126/311 (40%), Gaps = 24/311 (7%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
KY + + W P EV + D ++ L D E+ + NL + +S+
Sbjct: 16 KYPIFEKLIEKQLSFFWRPEEVDVSKDRLDFQ---ALPDHEKHIFLSNLKYQTLLDSVQG 72
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+ +A+ +S PE ++ AF E +HS ++ +II ++ +F+ I+
Sbjct: 73 RSPNVALLPIVSLPELETWIETWAFSETIHSRSYTHIIRNVTQAPELIFDDIVSNDKISE 132
Query: 158 KANWALQYTQTLSSP-SFTTGTKDADQEFLQDLFVFYVV---------------FEGMWF 201
+A+ +Y L + S + E V + E + F
Sbjct: 133 RADAVTKYYDDLINSVSLYNLYGEGKHEINGKSVVVNLFELKKKLYLAMMSVNILEAIRF 192
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLWT--KEF 257
Y FA + M G A+ + I RDE+LHL+ ++N Q ++P + +
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLSGTQHILNIMQDGKDDPEMAIVAAQC 252
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ ++ M +A E +A G +GLN QY+++I N R IG FK
Sbjct: 253 RDEAIKMFVDAAEQEKEWAEYLFKDGSMIGLNKHILCQYVEYITNARMTAIGFPAQFKNN 312
Query: 317 ENPFPWMSEVI 327
NP PW++ +
Sbjct: 313 SNPIPWINSWL 323
>gi|117624429|ref|YP_853342.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
APEC O1]
gi|237704711|ref|ZP_04535192.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
3_2_53FAA]
gi|115513553|gb|ABJ01628.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
APEC O1]
gi|226901077|gb|EEH87336.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
3_2_53FAA]
gi|323952030|gb|EGB47904.1| ribonucleotide reductase [Escherichia coli H252]
gi|323956004|gb|EGB51757.1| ribonucleotide reductase [Escherichia coli H263]
Length = 420
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 52 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 108
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 109 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 168
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 169 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 228
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 229 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 287
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 288 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 347
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 348 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 384
>gi|170767354|ref|ZP_02901807.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
albertii TW07627]
gi|170123688|gb|EDS92619.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
albertii TW07627]
Length = 376
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 138/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A +Y L + T
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISRYYDELIEMTSYWHLLGEGTHTVNGKTVT 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 244 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|320175005|gb|EFW50120.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
dysenteriae CDC 74-1112]
Length = 376
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFTSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 244 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|254805092|ref|YP_003083313.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
meningitidis alpha14]
gi|254668634|emb|CBA06257.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
meningitidis alpha14]
Length = 384
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + ++ M + +V + KY + + W P E+ + D +
Sbjct: 14 PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 71 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 130
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPI 190
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T + ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 191 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 250 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 309
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 352
>gi|319638203|ref|ZP_07992966.1| ribonucleoside diphosphate reductase subunit I beta [Neisseria
mucosa C102]
gi|317400476|gb|EFV81134.1| ribonucleoside diphosphate reductase subunit I beta [Neisseria
mucosa C102]
Length = 384
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/342 (21%), Positives = 138/342 (40%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 15 KTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 71
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 72 NLPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWSFSETIHSRSYT 131
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ + I A+A Y L + T
Sbjct: 132 HIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLVT 191
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 192 VSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 250
Query: 236 NFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ ++P + E Q + + +A E +A G +GLN
Sbjct: 251 TSTQHMLNLMRAGADDPEMAEIANELQDECFNLFKKAAEQEKEWAAYLFKDGSMIGLNKE 310
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ T+NP PW++ +
Sbjct: 311 ILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 352
>gi|121635003|ref|YP_975248.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
meningitidis FAM18]
gi|120866709|emb|CAM10461.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
meningitidis FAM18]
gi|325128288|gb|EGC51172.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis N1568]
gi|325130346|gb|EGC53112.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis OX99.30304]
gi|325132508|gb|EGC55201.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis M6190]
gi|325136206|gb|EGC58814.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis M0579]
gi|325138282|gb|EGC60851.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis ES14902]
gi|325142424|gb|EGC64828.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis 961-5945]
gi|325198443|gb|ADY93899.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis G2136]
gi|325201998|gb|ADY97452.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
meningitidis M01-240149]
Length = 377
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + ++ M + +V + KY + + W P E+ + D +
Sbjct: 7 PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 64 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPI 183
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T + ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 243 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 302
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 303 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 345
>gi|308389409|gb|ADO31729.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
meningitidis alpha710]
Length = 384
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + ++ M + +V + KY + + W P E+ + D +
Sbjct: 14 PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 71 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 130
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPI 190
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T + ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 191 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 250 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 309
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 352
>gi|253989035|ref|YP_003040391.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|211638141|emb|CAR66767.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid
reductase 1) (b2 protein) (r2 protein) [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253780485|emb|CAQ83647.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotid
reductase 1) (b2 protein) (r2 protein) [Photorhabdus
asymbiotica]
Length = 376
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/335 (21%), Positives = 134/335 (40%), Gaps = 27/335 (8%)
Query: 16 RVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+ + + M + +V + KY + + W P EV + D + N L
Sbjct: 10 KNDQLQEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NAL 66
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++ +I
Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHI 126
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-----------------TG 177
I ++ D +F+ I +A Y L +
Sbjct: 127 IRNIVNDPAVVFDDIVTNEEILKRAKDISAYYDDLIEMTNNYQLFGEGTHQIAGKTITVS 186
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 187 LRELKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTG 245
Query: 238 GIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
++N + ++P + E +Q+ + +A E +A +G +GLN
Sbjct: 246 TQHMLNLLRSGQDDPEMAEIANECEQQCYDLFVQAAEQEKEWADYLFSEGSMIGLNRDIL 305
Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 306 CQYVEYITNIRMQAVGLKLPFETRSNPIPWINAWL 340
>gi|40889712|pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
gi|40889713|pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 7 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS +F
Sbjct: 64 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + Y FA + M G A+ + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRAYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339
>gi|1942079|pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
gi|1942080|pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
gi|15825694|pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
gi|15825695|pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
gi|15826771|pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
gi|15826772|pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
gi|29726528|pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (Met) Form
gi|29726529|pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (Met) Form
Length = 375
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 7 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 64 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339
>gi|37526941|ref|NP_930285.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36786374|emb|CAE15427.1| ribonucleoside-diphosphate reductase 1 beta chain (ribonucleotide
reductase 1) (B2 protein) (R2 protein) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 376
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 73/334 (21%), Positives = 135/334 (40%), Gaps = 25/334 (7%)
Query: 16 RVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+ + + M + +V + KY + + W P EV + D + N L
Sbjct: 10 KNDQLQEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---NAL 66
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++ +I
Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHI 126
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------TGT 178
I ++ D +F+ I +A Y L + T +
Sbjct: 127 IRNIVNDPAVVFDDIVTNEEILKRAKDISAYYDDLIEMTNHYQLFGEGTHQIAGKTITAS 186
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 187 LRGLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGT 246
Query: 239 IDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
++N + ++P + KE +Q+ + +A E +A +G +GLN
Sbjct: 247 QHMLNLLRSGQDDPEMAEIAKECEQQCYDLFVQAAEQEKEWADYLFSEGSMIGLNKDILC 306
Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 307 QYVEYITNIRMQAVGLKLPFETRSNPIPWINAWL 340
>gi|225023977|ref|ZP_03713169.1| hypothetical protein EIKCOROL_00844 [Eikenella corrodens ATCC
23834]
gi|224943002|gb|EEG24211.1| hypothetical protein EIKCOROL_00844 [Eikenella corrodens ATCC
23834]
Length = 384
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/342 (21%), Positives = 134/342 (39%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+++ +V + M + +V + KY + + W P E+ + D +
Sbjct: 15 KEKNDVLKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 71
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 72 NLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 131
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-----------------SFT 175
+II ++ D +F+ + I A+A Y L +
Sbjct: 132 HIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYYNLLGEGEHRVNGKTIV 191
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+D ++ L V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 192 VSLRDLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 250
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ E + + +A E +A G +GLN
Sbjct: 251 TSTQHMLNLMRSGTDDPEMAEIAAELENDCFELFKKAAEQEKEWAEYLFKDGSMIGLNKD 310
Query: 291 SCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
QY+++I N R +GL F T+NP PW++ +
Sbjct: 311 ILCQYVEYITNHRMMAVGLNAAFPAATQNPIPWINAWLSSDN 352
>gi|301156451|emb|CBW15922.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Haemophilus parainfluenzae T3T1]
Length = 376
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 128/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D +
Sbjct: 8 QTKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
+II ++ D +F+ I +A Y L S T T D +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKECV 184
Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ + E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +E +Q++ + A E +A G +GLN
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKEWADYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F NP PW++ +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFGARSNPIPWINAWL 340
>gi|193068232|ref|ZP_03049196.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli E110019]
gi|300903617|ref|ZP_07121535.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 84-1]
gi|300926340|ref|ZP_07142140.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 182-1]
gi|301328725|ref|ZP_07221778.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 78-1]
gi|30041924|gb|AAP17650.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
flexneri 2a str. 2457T]
gi|56383622|gb|AAN43832.2| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
flexneri 2a str. 301]
gi|192958511|gb|EDV88950.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli E110019]
gi|300404353|gb|EFJ87891.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 84-1]
gi|300417617|gb|EFK00928.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 182-1]
gi|300844873|gb|EFK72633.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 78-1]
gi|315255170|gb|EFU35138.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 85-1]
Length = 389
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 21 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 77
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 78 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 137
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 138 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 197
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 198 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 256
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 257 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 316
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 317 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 353
>gi|330829606|ref|YP_004392558.1| ribonucleoside diphosphate reductase 1 subunit beta, ferritin-like
protein [Aeromonas veronii B565]
gi|328804742|gb|AEB49941.1| Ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
protein [Aeromonas veronii B565]
Length = 393
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 73/334 (21%), Positives = 134/334 (40%), Gaps = 26/334 (7%)
Query: 21 DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ M +S +V + K+ + W P EV + D ++ L E+
Sbjct: 31 KEPMFFGQSVNVARYDQQKHEVFERLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPPHEQ 87
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
+ NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II ++
Sbjct: 88 HIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIV 147
Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------TGTKDADQ 183
++F+ I +A + L + T T +
Sbjct: 148 NTPAQVFDDIVTNEQILKRAGSISHFYDDLIEATALYNLHGEGTHTVAGREVTITLRELK 207
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ L + E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 208 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHMLN 267
Query: 244 QIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
++ ++P + E +Q + EA + E +A G +GLN QY+++
Sbjct: 268 LMRTGQDDPEMAEIAAECEQACFEIFKEAAIQEKEWAEYLFQDGSMIGLNKDILCQYVEY 327
Query: 299 IANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK 331
I N R +GL+P F T+ NP PW++ +
Sbjct: 328 ITNLRMSAVGLQPAFAGTKQNPIPWINTWLSSDN 361
>gi|85711601|ref|ZP_01042658.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina
baltica OS145]
gi|85694461|gb|EAQ32402.1| ribonucleotide-diphosphate reductase beta subunit [Idiomarina
baltica OS145]
Length = 377
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 76/337 (22%), Positives = 133/337 (39%), Gaps = 26/337 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+++ N + M S +V + K+ + + W P EV + D + N
Sbjct: 8 QEQTNPLAEPMFFGNSVNVARYDQQKHSIFEKLIEKQISFFWRPEEVDVSRDRVDF---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
LT E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLTASEKHVFISNLKYQTLLDSIQGRSPNIALLPIVSLPELETWIETWSFFETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG-------TKDADQEF 185
+I+ +L D E+F I +AN +Y L + T D ++
Sbjct: 125 HILRNLFSDPSEIFEDIVINDQIKLRANDISRYYDDLIFYTQLWQTHGEGKITVDGEEHN 184
Query: 186 LQD---------LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE++HL
Sbjct: 185 VTRRELKKKLFLCINSVNALEAIRFYVSFACTFAFAERELMEGNAKIIRLIARDENVHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN + +E ++ + A E +AH G +GLN
Sbjct: 245 STQHMINLWQDGEDDPEMAEIAEELADEAYEIFMTAVKQEKQWAHYLFRDGSMIGLNESM 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVI 327
QY+++IAN R IG + F NP PWM++ +
Sbjct: 305 LCQYVEYIANLRMQAIGYDAPFPEQRSNPLPWMNKYL 341
>gi|300723737|ref|YP_003713044.1| ribonucleoside-diphosphate reductase 1 subunit beta [Xenorhabdus
nematophila ATCC 19061]
gi|297630261|emb|CBJ90912.1| ribonucleoside-diphosphate reductase 1, beta subunit [Xenorhabdus
nematophila ATCC 19061]
Length = 376
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 78/334 (23%), Positives = 136/334 (40%), Gaps = 25/334 (7%)
Query: 16 RVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+ N + M +S +V + KY + + W P EV + D + S L
Sbjct: 10 KNNQLQEPMFFGQSVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDYNS---L 66
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++ +I
Sbjct: 67 PDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYTHI 126
Query: 135 ITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS----------------FTTGT 178
I ++ D +F+ E I +A Y L + T
Sbjct: 127 IRNIVNDPSIVFDDIVENEQILKRAKDISAYYDDLIEMTNYYHQLGEGVHNVAGKIVTVN 186
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 187 LRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGT 246
Query: 239 IDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCE 293
++N + ++P + KE +QK + +A E +A G +GLN
Sbjct: 247 QHMLNLLRSGQDDPEMAEIAKECEQKCYDLFVDAAEQEKEWADYLFKDGSMIGLNKDILC 306
Query: 294 QYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 307 QYIEYITNIRMQAVGLKLPFETRSNPIPWINAWL 340
>gi|170019452|ref|YP_001724406.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
ATCC 8739]
gi|187775748|ref|ZP_02798054.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4196]
gi|188024880|ref|ZP_02774660.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4113]
gi|189010171|ref|ZP_02805091.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4076]
gi|189402101|ref|ZP_02779989.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4401]
gi|189403050|ref|ZP_02792862.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4486]
gi|189404930|ref|ZP_02812148.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC869]
gi|189405663|ref|ZP_02823406.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC508]
gi|208806716|ref|ZP_03249053.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4206]
gi|208812585|ref|ZP_03253914.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4045]
gi|208820390|ref|ZP_03260710.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4042]
gi|209398142|ref|YP_002271641.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4115]
gi|293415528|ref|ZP_06658171.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
gi|300948933|ref|ZP_07162994.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 116-1]
gi|300958921|ref|ZP_07171024.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 175-1]
gi|307138893|ref|ZP_07498249.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
H736]
gi|169754380|gb|ACA77079.1| Ribonucleoside-diphosphate reductase [Escherichia coli ATCC 8739]
gi|187771218|gb|EDU35062.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4196]
gi|188016038|gb|EDU54160.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4113]
gi|189002108|gb|EDU71094.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4076]
gi|189357709|gb|EDU76128.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4401]
gi|189362845|gb|EDU81264.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4486]
gi|189372811|gb|EDU91227.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC869]
gi|189378868|gb|EDU97284.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC508]
gi|208726517|gb|EDZ76118.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4206]
gi|208733862|gb|EDZ82549.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4045]
gi|208740513|gb|EDZ88195.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4042]
gi|209159542|gb|ACI36975.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4115]
gi|291433176|gb|EFF06155.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
gi|300314424|gb|EFJ64208.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 175-1]
gi|300451587|gb|EFK15207.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 116-1]
gi|315136867|dbj|BAJ44026.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
DH1]
gi|320192144|gb|EFW66789.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. EC1212]
gi|320641061|gb|EFX10540.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. G5101]
gi|320646450|gb|EFX15369.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H- str. 493-89]
gi|320651547|gb|EFX19927.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H- str. H 2687]
gi|320657299|gb|EFX25101.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320667818|gb|EFX34726.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. LSU-61]
gi|323936632|gb|EGB32918.1| ribonucleotide reductase [Escherichia coli E1520]
gi|323941071|gb|EGB37258.1| ribonucleotide reductase [Escherichia coli E482]
gi|326344044|gb|EGD67805.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. 1044]
Length = 389
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 21 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 77
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 78 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 137
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 138 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 197
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 198 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 256
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 257 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 316
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 317 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 353
>gi|219883069|ref|YP_002478233.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus
A6]
gi|219862075|gb|ACL42416.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus
A6]
Length = 326
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 68/342 (19%), Positives = 133/342 (38%), Gaps = 34/342 (9%)
Query: 23 RMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
+++N R + ++ E + NN W+P ++P+ +D+ W + LT +E+L+
Sbjct: 6 KLIN-RVNAINWNRIQDDKDVEVWNRLVNNFWLPEKIPLSNDVQSWAT---LTPEEQLLT 61
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
R +++ +++ P L AF E+VH+ ++ I ++L +
Sbjct: 62 MRVFTGLTLLDTIQGTVGAVSLIPDAITPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTK 121
Query: 143 --GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
E F E + KA + Y Q V + E
Sbjct: 122 EIDEAFRWSEENVHLQKKAQIVMDYYQGDD---------------PLKRKVASTLLESFL 166
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF + K+ A+ + I++DE++H + + + +E Q
Sbjct: 167 FYSGFYLPMYWSSRAKLTNTADLIRLIIKDEAVHGYYIGYKFQRGLEKETAERREELQAY 226
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE--- 317
+ +L E E+ Y H+ VGL A ++++ + AN+ +GL+P+F
Sbjct: 227 AYELLDELYENEVQYTHDLYDG--VGL-AEDVKKFLHYNANKALMNLGLDPVFAQDATNV 283
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAE-------LKWD 352
NP + + + +FF + Y G+ WD
Sbjct: 284 NPAILSALSPNADENHDFFSGSGSSYIVGSSKAVSTLDGDWD 325
>gi|161870162|ref|YP_001599332.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
meningitidis 053442]
gi|161595715|gb|ABX73375.1| ribonucleoside diphosphate reductase I beta chain [Neisseria
meningitidis 053442]
Length = 384
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + ++ M + +V + KY + + W P E+ + D +
Sbjct: 14 PKTKNDALNEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 71 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 130
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGMHNVGGKPV 190
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T + ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 191 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 250 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 309
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWINAWLSSDN 352
>gi|120598753|ref|YP_963327.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
W3-18-1]
gi|146293170|ref|YP_001183594.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
putrefaciens CN-32]
gi|120558846|gb|ABM24773.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Shewanella sp. W3-18-1]
gi|145564860|gb|ABP75795.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Shewanella putrefaciens CN-32]
gi|319426318|gb|ADV54392.1| ribonucleotide reductase [Shewanella putrefaciens 200]
Length = 376
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 73/336 (21%), Positives = 130/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + M +S +V + KY + + W P EV + D +
Sbjct: 8 QTPNDATREPMFLGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDYND-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 66 -LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS--FTTGTKDADQEFLQDLF 190
+II ++ D +F+ I +A +Y L + F ++L
Sbjct: 125 HIIRNIVNDPSVIFDDIVVNKEILRRATDIAEYYDHLIKLTQVFNLFGAGTHLIDGEELV 184
Query: 191 --------------VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 185 VNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLN 244
Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ E QQ++ + +A E +A G +GLN
Sbjct: 245 STQHILNIMQGGKDDPEMGEIAAQCQQEAYDLFLKAAEQEKEWAKYLFKDGSMIGLNEQI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY++FI N+R + L + + NP PWM +
Sbjct: 305 LCQYVEFITNQRMKSVNLPQPYPESTNPLPWMKNWL 340
>gi|269213593|ref|ZP_05982340.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
cinerea ATCC 14685]
gi|269146056|gb|EEZ72474.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
cinerea ATCC 14685]
Length = 377
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 70/343 (20%), Positives = 135/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 7 PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 64 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E I A+A Y L +
Sbjct: 124 THIIRNIVNDPSIVFDDIVENEYIIARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKLV 183
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
++ ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 184 NVSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ +E Q++ + +A E +A G +GLN
Sbjct: 243 LTSTQHMLNLMRSGVDDPEMAEIAEELQEECFKLFKKAAEQEKEWAAYLFKDGSMIGLNK 302
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 303 EILSQYVEYITNLRMQAVGLPIGFEGANQNPIPWINAWLSSDN 345
>gi|296128314|ref|YP_003635564.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM
20109]
gi|296020129|gb|ADG73365.1| Ribonucleoside-diphosphate reductase [Cellulomonas flavigena DSM
20109]
Length = 326
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 66/348 (18%), Positives = 130/348 (37%), Gaps = 34/348 (9%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
++ + D+ + + N+L K W+ N W+P +VP+ +D+ W +
Sbjct: 2 TPTGKLKLVDR---VSAINWNRLQDEKDLEVWD---RLVGNFWLPEKVPVSNDIQSWAT- 54
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
LT+ E+ M R +++ +++ P AF E+VH+ ++
Sbjct: 55 --LTEAEKTMTTRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSY 112
Query: 132 QYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
I ++L + E F E P++ KA L Y +
Sbjct: 113 SSIFSTLISTKEIDEAFRWSEENPNLQRKAEIVLDYYRGDD---------------PLKR 157
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 158 KVASTMLESFLFYSGFYAPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLERV 217
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
E + + +L E E+ Y + +GL ++++++ AN+ +G
Sbjct: 218 SEAERAELKDYTFNLLFELYDNEVEYTQDLY--DELGLT-EDVKKFLRYNANKALMNLGY 274
Query: 310 EPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
E LF E NP + + + +FF + Y + + D
Sbjct: 275 EALFPRDETDVNPAILAALSPNADENHDFFSGSGSSYVIGKAVNTEDD 322
>gi|332093862|gb|EGI98916.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
boydii 5216-82]
Length = 376
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 136/336 (40%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y L + T
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLCELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244
Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 245 GTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|291283479|ref|YP_003500297.1| Ribonucleoside-diphosphate reductase 1, beta subunit, B2
[Escherichia coli O55:H7 str. CB9615]
gi|290763352|gb|ADD57313.1| Ribonucleoside-diphosphate reductase 1, beta subunit, B2
[Escherichia coli O55:H7 str. CB9615]
Length = 389
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 21 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 77
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 78 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 137
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 138 HIIRNIVNDPSVVFDDIITNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 197
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 198 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 256
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 257 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 316
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 317 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 353
>gi|494379|pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
gi|494380|pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
gi|494553|pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
gi|494554|pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
Length = 375
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 134/337 (39%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + M + V + KY + + W P EV + D ++
Sbjct: 7 ATKNDQLKEPMFFGQPVQVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 64 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWL 339
>gi|284799957|ref|ZP_05985309.2| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
subflava NJ9703]
gi|284796454|gb|EFC51801.1| ribonucleoside-diphosphate reductase, beta subunit [Neisseria
subflava NJ9703]
Length = 377
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/342 (20%), Positives = 134/342 (39%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 8 KTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 65 NLPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ + I A+A Y L + T
Sbjct: 125 HIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYTQYYNLLGEGSHNVGGKLVT 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ E Q + + +A E +A G +GLN
Sbjct: 244 TSTQHMLNLMRAGADDPEMAEIANELQDECFNLFKKAAEQEKEWAAYLFKDGSMIGLNKE 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ T+NP PW++ +
Sbjct: 304 ILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 345
>gi|4389292|pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
gi|40889714|pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
gi|40889715|pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 7 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS +F
Sbjct: 64 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RD +LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDAALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339
>gi|183599610|ref|ZP_02961103.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827]
gi|188021860|gb|EDU59900.1| hypothetical protein PROSTU_03095 [Providencia stuartii ATCC 25827]
Length = 378
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 74/336 (22%), Positives = 134/336 (39%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+KR + + M + +V + KY + + W P EV + D + N
Sbjct: 10 QKRNDQLLEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---N 66
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
GL D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 67 GLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 126
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
+II ++ D +F+ E I +A Y TL +
Sbjct: 127 HIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTLIEMTNYYHMFGEGTHTCNGKQIT 186
Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 187 VSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 246
Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + E + + + +A E +A +G +GLN
Sbjct: 247 GTQHMLNLLRSGQDDPEMAEIAAECEDECYKLFVDAAEQEKEWAEYLFSEGSMIGLNKDI 306
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 307 LCQYVEYITNIRMQAVGLKLPFEARSNPIPWINAWL 342
>gi|237808189|ref|YP_002892629.1| ribonucleotide-diphosphate reductase subunit beta [Tolumonas
auensis DSM 9187]
gi|237500450|gb|ACQ93043.1| ribonucleotide reductase [Tolumonas auensis DSM 9187]
Length = 377
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 70/342 (20%), Positives = 132/342 (38%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
++ + + M ++ +V + KY + W P EV + D +++
Sbjct: 8 KQPNDARKEPMFFGQTVNVARYDQQKYEVFERLIEKQLSFFWRPEEVDVSQDRIDYQT-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 66 -LPPHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-----------------SFT 175
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVNDPAVVFDDIVVNEQIIKRAEDIAGYYDELIELTQYWQLLGEGTHQVNGKTVV 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSRRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ N +E + + +A E +A G +GLN
Sbjct: 244 TGTQHMLNILREGNDDPEMAEIARELHDECFALFKKAAEQEKEWASYLFKDGSMLGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY++FI N R +GL F +NP PW++ ++
Sbjct: 304 ILCQYVEFITNVRMQGVGLPLAFDADRQNPLPWINTWLNSDN 345
>gi|146312444|ref|YP_001177518.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp.
638]
gi|145319320|gb|ABP61467.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Enterobacter sp. 638]
Length = 376
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 76/336 (22%), Positives = 137/336 (40%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y L + T
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISHYYDELIEMTSYWHLLGEGTHSVNGKTVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLT 244
Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +++P + +E +Q+ + A L E +A G +GLN
Sbjct: 245 GTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVLAALQEKEWAEYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GLE FK NP PW++ +
Sbjct: 305 LCQYIEYITNIRMQAVGLELPFKTRSNPIPWINTWL 340
>gi|26248623|ref|NP_754663.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
CFT073]
gi|74312755|ref|YP_311174.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei
Ss046]
gi|91211528|ref|YP_541514.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
UTI89]
gi|110642443|ref|YP_670173.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
536]
gi|157157492|ref|YP_001463584.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
E24377A]
gi|161485800|ref|NP_708125.3| ribonucleotide-diphosphate reductase subunit beta [Shigella
flexneri 2a str. 301]
gi|161486465|ref|NP_837840.2| ribonucleotide-diphosphate reductase subunit beta [Shigella
flexneri 2a str. 2457T]
gi|191166513|ref|ZP_03028343.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli B7A]
gi|191170278|ref|ZP_03031832.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli F11]
gi|194433322|ref|ZP_03065602.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
dysenteriae 1012]
gi|209919687|ref|YP_002293771.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
SE11]
gi|215487452|ref|YP_002329883.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O127:H6 str. E2348/69]
gi|218554798|ref|YP_002387711.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
IAI1]
gi|218559152|ref|YP_002392065.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
S88]
gi|218695841|ref|YP_002403508.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
55989]
gi|218700706|ref|YP_002408335.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
IAI39]
gi|227887293|ref|ZP_04005098.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli 83972]
gi|253772842|ref|YP_003035673.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162246|ref|YP_003045354.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
B str. REL606]
gi|256017603|ref|ZP_05431468.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
gi|260844831|ref|YP_003222609.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
coli O103:H2 str. 12009]
gi|260856285|ref|YP_003230176.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
coli O26:H11 str. 11368]
gi|260868965|ref|YP_003235367.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
coli O111:H- str. 11128]
gi|293446578|ref|ZP_06663000.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
gi|300818165|ref|ZP_07098377.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 107-1]
gi|300822109|ref|ZP_07102251.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 119-7]
gi|300981251|ref|ZP_07175428.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 200-1]
gi|300983269|ref|ZP_07176508.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 45-1]
gi|301048988|ref|ZP_07195975.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 185-1]
gi|306814652|ref|ZP_07448814.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
NC101]
gi|307311198|ref|ZP_07590842.1| ribonucleotide reductase [Escherichia coli W]
gi|309793115|ref|ZP_07687543.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 145-7]
gi|331647890|ref|ZP_08348982.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli M605]
gi|331668939|ref|ZP_08369787.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli TA271]
gi|331678186|ref|ZP_08378861.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli H591]
gi|26109028|gb|AAN81231.1|AE016763_190 Ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
CFT073]
gi|73856232|gb|AAZ88939.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
sonnei Ss046]
gi|91073102|gb|ABE07983.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
UTI89]
gi|110344035|gb|ABG70272.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
536]
gi|157079522|gb|ABV19230.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli E24377A]
gi|190903473|gb|EDV63192.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli B7A]
gi|190909794|gb|EDV69379.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli F11]
gi|194418416|gb|EDX34505.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
dysenteriae 1012]
gi|209912946|dbj|BAG78020.1| ribonucleoside diphosphate reductase beta subunit [Escherichia coli
SE11]
gi|215265524|emb|CAS09927.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Escherichia coli O127:H6 str. E2348/69]
gi|218352573|emb|CAU98352.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Escherichia coli 55989]
gi|218361566|emb|CAQ99157.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Escherichia coli IAI1]
gi|218365921|emb|CAR03663.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Escherichia coli S88]
gi|218370692|emb|CAR18503.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Escherichia coli IAI39]
gi|222033996|emb|CAP76737.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
coli LF82]
gi|227835643|gb|EEJ46109.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli 83972]
gi|242377869|emb|CAQ32637.1| nrdB, subunit of B2 protein and GDP reductase [multifunctional]
[Escherichia coli BL21(DE3)]
gi|253323886|gb|ACT28488.1| ribonucleotide reductase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253974147|gb|ACT39818.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
B str. REL606]
gi|253978314|gb|ACT43984.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
BL21(DE3)]
gi|257754934|dbj|BAI26436.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
coli O26:H11 str. 11368]
gi|257759978|dbj|BAI31475.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
coli O103:H2 str. 12009]
gi|257765321|dbj|BAI36816.1| ribonucleoside diphosphate reductase 1, beta subunit [Escherichia
coli O111:H- str. 11128]
gi|281179326|dbj|BAI55656.1| ribonucleoside diphosphate reductase beta subunit [Escherichia coli
SE15]
gi|291323408|gb|EFE62836.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
gi|294490302|gb|ADE89058.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli IHE3034]
gi|300299180|gb|EFJ55565.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 185-1]
gi|300307615|gb|EFJ62135.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 200-1]
gi|300408603|gb|EFJ92141.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 45-1]
gi|300525239|gb|EFK46308.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 119-7]
gi|300529309|gb|EFK50371.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 107-1]
gi|305852046|gb|EFM52498.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
NC101]
gi|306908704|gb|EFN39201.1| ribonucleotide reductase [Escherichia coli W]
gi|307554301|gb|ADN47076.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
protein [Escherichia coli ABU 83972]
gi|308123401|gb|EFO60663.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 145-7]
gi|312946856|gb|ADR27683.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O83:H1 str. NRG 857C]
gi|313651060|gb|EFS15459.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
flexneri 2a str. 2457T]
gi|315061535|gb|ADT75862.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Escherichia coli W]
gi|315292180|gb|EFU51532.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 153-1]
gi|320178793|gb|EFW53756.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
ATCC 9905]
gi|320196104|gb|EFW70728.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
WV_060327]
gi|320199830|gb|EFW74419.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
EC4100B]
gi|323156512|gb|EFZ42666.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
coli EPECa14]
gi|323161696|gb|EFZ47579.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
coli E128010]
gi|323168602|gb|EFZ54282.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
sonnei 53G]
gi|323171914|gb|EFZ57558.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
coli LT-68]
gi|323176838|gb|EFZ62428.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
coli 1180]
gi|323184146|gb|EFZ69523.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
coli 1357]
gi|323188037|gb|EFZ73332.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
coli RN587/1]
gi|323377884|gb|ADX50152.1| Ribonucleoside-diphosphate reductase [Escherichia coli KO11]
gi|324006608|gb|EGB75827.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 57-2]
gi|324013118|gb|EGB82337.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 60-1]
gi|324117882|gb|EGC11781.1| ribonucleotide reductase [Escherichia coli E1167]
gi|325496725|gb|EGC94584.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
fergusonii ECD227]
gi|330912066|gb|EGH40576.1| ribonucleotide reductase of class 1a (aerobic), beta subunit
[Escherichia coli AA86]
gi|331043614|gb|EGI15752.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli M605]
gi|331064133|gb|EGI36044.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli TA271]
gi|331074646|gb|EGI45966.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli H591]
gi|332096162|gb|EGJ01165.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
dysenteriae 155-74]
gi|332754883|gb|EGJ85248.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
flexneri 4343-70]
gi|332755286|gb|EGJ85650.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
flexneri K-671]
gi|332756386|gb|EGJ86737.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
flexneri 2747-71]
gi|332766056|gb|EGJ96266.1| nrdB [Shigella flexneri 2930-71]
gi|333001382|gb|EGK20950.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
flexneri VA-6]
gi|333002603|gb|EGK22163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
flexneri K-272]
gi|333016476|gb|EGK35807.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
flexneri K-304]
gi|333016745|gb|EGK36073.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
flexneri K-227]
Length = 376
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 244 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|327394563|dbj|BAK11985.1| ribonucleoside-diphosphate reductase 1 beta subunit NrdB [Pantoea
ananatis AJ13355]
Length = 376
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 76/336 (22%), Positives = 140/336 (41%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I A+A QY L + T
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDLIEMTSYWHLLGEGTHQVNGKSVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + E +++ + +A L E +A G +GLN
Sbjct: 245 GTQHMLNLLRTGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 305 LCQYIEYITNIRMQAVGLDLPFETRSNPIPWINAWL 340
>gi|225075859|ref|ZP_03719058.1| hypothetical protein NEIFLAOT_00882 [Neisseria flavescens
NRL30031/H210]
gi|224952805|gb|EEG34014.1| hypothetical protein NEIFLAOT_00882 [Neisseria flavescens
NRL30031/H210]
Length = 388
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 70/341 (20%), Positives = 131/341 (38%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 19 KTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 75
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 76 NLPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWSFSETIHSRSYT 135
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFV 191
+II ++ D +F+ + I A+A Y L + + + L
Sbjct: 136 HIIRNIVNDPSVVFDDIVQNKYIIARAEDIACYYDDLIEYTQYYNLLGEGSHNIGGKLVT 195
Query: 192 FYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ V E + FY FA + M G A+ + I RDE+LHL
Sbjct: 196 VSLRELKKKLYLCLMCVNVLEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 255
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ E Q + + +A E +A G +GLN
Sbjct: 256 STQHMLNLMRAGADDPEMAEIANELQDECFNLFKKAAEQEKEWAAYLFKDGSMIGLNKEI 315
Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ T+NP PW++ +
Sbjct: 316 LAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 356
>gi|300936793|ref|ZP_07151685.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 21-1]
gi|300458078|gb|EFK21571.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 21-1]
Length = 405
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 37 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 93
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 94 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 153
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 154 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 213
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 214 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 272
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 273 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 332
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 333 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 369
>gi|324112772|gb|EGC06748.1| ribonucleotide reductase [Escherichia fergusonii B253]
Length = 389
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 21 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 77
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 78 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 137
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 138 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKTVT 197
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 198 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 256
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 257 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 316
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 317 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 353
>gi|322692090|ref|YP_004221660.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
longum subsp. longum JCM 1217]
gi|320456946|dbj|BAJ67568.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
longum subsp. longum JCM 1217]
Length = 330
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 66/351 (18%), Positives = 132/351 (37%), Gaps = 32/351 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
++PI K + + D+ + ++ N+L K W+ N W+P +VP+ +D+
Sbjct: 1 MAPISIPRKPLKLIDR---VSATNWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W+ +T+DE + R +++ +++ P AF E+V
Sbjct: 55 SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111
Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ I ++L E F+ + KA L Y + +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ + Q + +L+E E+ Y + VGL E+++++ N+
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGLT-DDVEKFLRYNGNKAL 273
Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+G LF NP + + + +FF + Y G + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324
>gi|218690398|ref|YP_002398610.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
ED1a]
gi|218427962|emb|CAR08882.2| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Escherichia coli ED1a]
Length = 376
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKAVT 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 244 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|291618170|ref|YP_003520912.1| NrdB [Pantoea ananatis LMG 20103]
gi|291153200|gb|ADD77784.1| NrdB [Pantoea ananatis LMG 20103]
Length = 387
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 76/336 (22%), Positives = 140/336 (41%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + KY + + W P EV + D ++
Sbjct: 19 QNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 75
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 76 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 135
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I A+A QY L + T
Sbjct: 136 HIIRNIVNDPAVVFDDIVTNQQILARAQDISQYYDDLIEMTSYWHLLGEGTHQVNGKSVT 195
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 196 VSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 255
Query: 237 FGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + E +++ + +A L E +A G +GLN
Sbjct: 256 GTQHMLNLLRTGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNKDI 315
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 316 LCQYIEYITNIRMQAVGLDLPFETRSNPIPWINAWL 351
>gi|56460472|ref|YP_155753.1| ribonucleotide-diphosphate reductase subunit beta [Idiomarina
loihiensis L2TR]
gi|56179482|gb|AAV82204.1| Ribonucleotide reductase, beta subunit [Idiomarina loihiensis L2TR]
Length = 377
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 75/337 (22%), Positives = 133/337 (39%), Gaps = 26/337 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+++ N + M S +V + K+ + + W P E+ + D + N
Sbjct: 8 QEQNNPLTEPMFLGNSVNVARYDQQKHSIFEKLIEKQISFFWRPEEIDVSRDRIDF---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
LT E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLTASEKHVFISNLKYQTLLDSIQGRSPNIALLPIVSLPELETWIETWSFFETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+I+ +L D E+F I +AN +Y L T
Sbjct: 125 HILRNLFSDPSEVFEDIVINEQIKIRANDISKYYDDLIFYTQLLQTHGEGDVVVEGKTHT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
T+ ++ L E + FY FA + M G A+ + I RDE++HL
Sbjct: 185 VTQREIKKKLFLCINSVNALEAIRFYVSFACTFAFAERELMEGNAKIIKLIARDENVHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +E + + + A E +AH G +GLN
Sbjct: 245 STQHILNLWQYGEDDPEMKEIAEELRDDAYEIFMTAVKQEKQWAHYLFKDGSMIGLNESM 304
Query: 292 CEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVI 327
QY+++IAN R IG + F NP PWM++ +
Sbjct: 305 LCQYVEYIANLRMQAIGFDAPFENQRSNPLPWMNKYL 341
>gi|15802782|ref|NP_288809.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 EDL933]
gi|15832372|ref|NP_311145.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. Sakai]
gi|16130170|ref|NP_416738.1| ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like
protein [Escherichia coli str. K-12 substr. MG1655]
gi|82544520|ref|YP_408467.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
Sb227]
gi|82777644|ref|YP_403993.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
dysenteriae Sd197]
gi|89109052|ref|AP_002832.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Escherichia coli str. K-12 substr. W3110]
gi|157161718|ref|YP_001459036.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
HS]
gi|170081853|ref|YP_001731173.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
protein [Escherichia coli str. K-12 substr. DH10B]
gi|187731010|ref|YP_001881065.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
CDC 3083-94]
gi|188495860|ref|ZP_03003130.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli 53638]
gi|195935609|ref|ZP_03080991.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. EC4024]
gi|218548311|ref|YP_002382102.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
fergusonii ATCC 35469]
gi|218705765|ref|YP_002413284.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
UMN026]
gi|238901409|ref|YP_002927205.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
protein [Escherichia coli BW2952]
gi|254794126|ref|YP_003078963.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. TW14359]
gi|256022083|ref|ZP_05435948.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
4_1_40B]
gi|261223312|ref|ZP_05937593.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. FRIK2000]
gi|261259138|ref|ZP_05951671.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. FRIK966]
gi|293405702|ref|ZP_06649694.1| nrdB [Escherichia coli FVEC1412]
gi|293410599|ref|ZP_06654175.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
gi|298381383|ref|ZP_06990982.1| nrdB [Escherichia coli FVEC1302]
gi|309785072|ref|ZP_07679705.1| ribonucleoside-diphosphate reductase 1, subunit beta [Shigella
dysenteriae 1617]
gi|312973510|ref|ZP_07787682.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
coli 1827-70]
gi|57014104|sp|P69924|RIR2_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta;
AltName: Full=Protein B2; AltName: Full=Protein R2;
AltName: Full=Ribonucleotide reductase 1
gi|57014105|sp|P69925|RIR2_ECO57 RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta;
AltName: Full=Protein B2; AltName: Full=Protein R2;
AltName: Full=Ribonucleotide reductase 1
gi|12516573|gb|AAG57364.1|AE005456_1 ribonucleoside diphosphage reductase 1, beta subunit, B2
[Escherichia coli O157:H7 str. EDL933]
gi|146967|gb|AAA24224.1| ribonucleoside diphosphate reductase B2 subunit precursor
[Escherichia coli]
gi|1788567|gb|AAC75295.1| ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like
protein [Escherichia coli str. K-12 substr. MG1655]
gi|1799582|dbj|BAA16054.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Escherichia coli str. K12 substr. W3110]
gi|13362587|dbj|BAB36541.1| ribonucleoside-diphosphate reductase 1 beta subunit [Escherichia
coli O157:H7 str. Sakai]
gi|81241792|gb|ABB62502.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
dysenteriae Sd197]
gi|81245931|gb|ABB66639.1| ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Shigella
boydii Sb227]
gi|157067398|gb|ABV06653.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli HS]
gi|169889688|gb|ACB03395.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
protein [Escherichia coli str. K-12 substr. DH10B]
gi|187428002|gb|ACD07276.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella boydii
CDC 3083-94]
gi|188491059|gb|EDU66162.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli 53638]
gi|218355852|emb|CAQ88465.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Escherichia fergusonii ATCC 35469]
gi|218432862|emb|CAR13756.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Escherichia coli UMN026]
gi|238863475|gb|ACR65473.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
protein [Escherichia coli BW2952]
gi|254593526|gb|ACT72887.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
protein [Escherichia coli O157:H7 str. TW14359]
gi|284922226|emb|CBG35308.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
042]
gi|291427910|gb|EFF00937.1| nrdB [Escherichia coli FVEC1412]
gi|291471067|gb|EFF13551.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
gi|298278825|gb|EFI20339.1| nrdB [Escherichia coli FVEC1302]
gi|308927442|gb|EFP72916.1| ribonucleoside-diphosphate reductase 1, subunit beta [Shigella
dysenteriae 1617]
gi|309702545|emb|CBJ01872.1| ribonucleoside-diphosphate reductase 1 beta chain [Escherichia coli
ETEC H10407]
gi|310332105|gb|EFP99340.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
coli 1827-70]
gi|315615496|gb|EFU96128.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
coli 3431]
gi|320184866|gb|EFW59654.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
flexneri CDC 796-83]
gi|320663001|gb|EFX30318.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O55:H7 str. USDA 5905]
gi|327252504|gb|EGE64163.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
coli STEC_7v]
gi|332094036|gb|EGI99088.1| ribonucleoside-diphosphate reductase 1 subunit beta [Shigella
boydii 3594-74]
gi|332344015|gb|AEE57349.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli UMNK88]
Length = 376
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 244 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|4389291|pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
Length = 375
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 70/337 (20%), Positives = 135/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 7 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS +F
Sbjct: 64 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + Y FA + M G A+ + I RD +LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRXYVSFACSFAFAERELMEGNAKIIRLIARDAALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339
>gi|194427189|ref|ZP_03059740.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli B171]
gi|194436109|ref|ZP_03068211.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli 101-1]
gi|300918603|ref|ZP_07135191.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 115-1]
gi|300931418|ref|ZP_07146747.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 187-1]
gi|301303305|ref|ZP_07209430.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 124-1]
gi|194414810|gb|EDX31081.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli B171]
gi|194424837|gb|EDX40822.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli 101-1]
gi|300414255|gb|EFJ97565.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 115-1]
gi|300460788|gb|EFK24281.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 187-1]
gi|300841479|gb|EFK69239.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 124-1]
gi|323961541|gb|EGB57149.1| ribonucleotide reductase [Escherichia coli H489]
gi|323973062|gb|EGB68256.1| ribonucleotide reductase [Escherichia coli TA007]
Length = 393
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 25 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 81
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 82 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 141
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 142 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 201
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 202 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 260
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 261 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 320
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 321 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 357
>gi|157879968|pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
gi|157879969|pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
Length = 375
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 70/337 (20%), Positives = 133/337 (39%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + M + V + KY + + W P EV + D ++
Sbjct: 7 ATKNDQLKEPMFFGQPVQVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 64 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + Y FA + M G A+ + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRXYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWL 339
>gi|331663742|ref|ZP_08364652.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli TA143]
gi|323977567|gb|EGB72653.1| ribonucleotide reductase [Escherichia coli TW10509]
gi|331059541|gb|EGI31518.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli TA143]
Length = 389
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 21 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 77
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 78 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 137
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 138 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 197
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 198 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 256
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 257 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 316
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 317 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 353
>gi|331658316|ref|ZP_08359278.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli TA206]
gi|307626227|gb|ADN70531.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
UM146]
gi|331056564|gb|EGI28573.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli TA206]
Length = 389
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 21 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 77
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 78 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 137
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 138 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 197
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 198 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 256
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 257 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 316
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 317 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 353
>gi|189403970|ref|ZP_02786340.2| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4501]
gi|217327202|ref|ZP_03443285.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. TW14588]
gi|301026864|ref|ZP_07190263.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 196-1]
gi|301647674|ref|ZP_07247468.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 146-1]
gi|189368305|gb|EDU86721.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4501]
gi|217319569|gb|EEC27994.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. TW14588]
gi|260448673|gb|ACX39095.1| Ribonucleoside-diphosphate reductase [Escherichia coli DH1]
gi|299879524|gb|EFI87735.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 196-1]
gi|301074204|gb|EFK89010.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 146-1]
gi|326339582|gb|EGD63393.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. 1125]
Length = 393
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 25 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 81
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 82 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 141
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 142 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 201
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 202 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 260
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 261 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 320
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 321 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 357
>gi|42543295|pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-D84e (D84e
Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
Reductase)
gi|42543296|pdb|1PM2|B Chain B, Crystal Structure Of Manganese Substituted R2-D84e (D84e
Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
Reductase)
Length = 339
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 72/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 7 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + ES+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 64 ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWL 339
>gi|325578589|ref|ZP_08148689.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
parainfluenzae ATCC 33392]
gi|325159825|gb|EGC71955.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
parainfluenzae ATCC 33392]
Length = 376
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 70/336 (20%), Positives = 127/336 (37%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D +
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG--------------- 177
+II ++ D +F+ I +A Y L S
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYAVDGKECV 184
Query: 178 -TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
T ++ L + E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +E +Q++ + A E +A G +GLN
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKEWADYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F NP PW++ +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFGARSNPIPWINAWL 340
>gi|145298925|ref|YP_001141766.1| ribonucleotide-diphosphate reductase subunit beta [Aeromonas
salmonicida subsp. salmonicida A449]
gi|142851697|gb|ABO90018.1| ribonucleoside-diphosphate reductase, beta subunit [Aeromonas
salmonicida subsp. salmonicida A449]
Length = 377
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 73/334 (21%), Positives = 137/334 (41%), Gaps = 26/334 (7%)
Query: 21 DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ M +S +V + K+ + W P EV + D ++ L E+
Sbjct: 15 KEPMFFGQSVNVARYDQQKHEVFERLIEKQLSFFWRPEEVDVSHDRIDYQ---ALPPHEQ 71
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
+ NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II ++
Sbjct: 72 HIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIV 131
Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPS----------------FTTGTKDADQ 183
+ G++F+ I +A + L + T T +
Sbjct: 132 NNPGQVFDDIVTNEQILKRAGSISCFYDDLIEATALYNLHGEGTHSVAGQMRTITLRELK 191
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ L + E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 192 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHMLN 251
Query: 244 QIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
++ ++P + + E +Q + EA + E +A G +GLN QY+++
Sbjct: 252 LMRTGQDDPEMAEISAECEQACFEIFKEAAIQEKEWAEYLFQDGSMIGLNKDILCQYVEY 311
Query: 299 IANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK 331
I N R + +GL+P F +NP PW++ +
Sbjct: 312 ITNLRMNAVGLQPAFAGAKQNPIPWINTWLSSDN 345
>gi|317164437|gb|ADV07978.1| ribonucleotide-diphosphate reductase subunit beta [Neisseria
gonorrhoeae TCDC-NG08107]
Length = 377
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 134/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 7 PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 64 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWVETWSFSETIHSRSY 123
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 124 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPV 183
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T + ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 184 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 243 LTGTQHMLNLMRSGVDDPEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 302
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL F+ +NP PW++ +
Sbjct: 303 EILSQYVEYITNLRMQAVGLSAGFEGANQNPIPWINAWLSSDN 345
>gi|329298015|ref|ZP_08255351.1| ribonucleotide-diphosphate reductase subunit beta [Plautia stali
symbiont]
Length = 376
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 73/336 (21%), Positives = 136/336 (40%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------T 176
+II ++ D ++F+ I A+A +Y L + T
Sbjct: 125 HIIRNIVNDPSQVFDDIVTNEQILARAQDISKYYDDLIEMTNYWHLLGEGTHQVAGKSVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ KE + + + +A E +A G +GLN
Sbjct: 245 GTQHMLNLMRTGEDDPEMKEIAAECRDECFDLFKKAAEQEKEWAEYLFSGGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 305 LCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340
>gi|161502570|ref|YP_001569682.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. arizonae serovar 62:z4,z23:-- str.
RSK2980]
gi|160863917|gb|ABX20540.1| hypothetical protein SARI_00614 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 376
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 138/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGVGRHTVNGKTIT 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + +++P + +E +Q+ + +A E +A G +GLN
Sbjct: 244 TGTQHMLNLLRSGVDDPEMADIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|255026984|ref|ZP_05298970.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes FSL J2-003]
Length = 336
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 72/318 (22%), Positives = 140/318 (44%), Gaps = 19/318 (5%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N + + + Y + Y N+W+P EV M+ D + L++ E+
Sbjct: 25 IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+G A+ +S I I ++++P A +E +H+ ++ Y++ S+
Sbjct: 82 DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F + R P+I + + + + E L + + EG+
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGIN 192
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GFA +L R NKM G + +I RDE H F +VI I ENP L T+E +
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEY 252
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENP 319
+ A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N
Sbjct: 253 THEAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNT 311
Query: 320 FPWMSEVID--LKKEKNF 335
W+ D + + +F
Sbjct: 312 MTWIKAYADNFTETKTDF 329
>gi|329119976|ref|ZP_08248648.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
bacilliformis ATCC BAA-1200]
gi|327463889|gb|EGF10203.1| ribonucleotide-diphosphate reductase beta subunit [Neisseria
bacilliformis ATCC BAA-1200]
Length = 384
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 69/342 (20%), Positives = 136/342 (39%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+++ + + M + +V + K+ + + W P E+ + D +
Sbjct: 15 KQKNDALKEPMFFGQPVNVARYDQQKFEVFEKLIEKQLSFFWRPEEIDVSRDRIDY---A 71
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 72 NLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 131
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-----------------SFT 175
+II ++ D +F+ + I A+A Y L +
Sbjct: 132 HIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYYNLLGEGVHQVGGKTVV 191
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 192 VKLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 250
Query: 236 NFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ E Q + + +A E +A G +GLN
Sbjct: 251 TSTQHMLNLMRAGADDPEMAEIAVELQDECFKLFKKAAEQEKEWAAYLFKDGSMIGLNKD 310
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
QY+++I N R +GL+P F + +NP PW++ +
Sbjct: 311 ILCQYVEYITNHRMIAVGLDPAFPASNQNPIPWINAWLSSDN 352
>gi|332290530|ref|YP_004421382.1| ribonucleotide-diphosphate reductase subunit beta [Gallibacterium
anatis UMN179]
gi|330433426|gb|AEC18485.1| ribonucleotide-diphosphate reductase subunit beta [Gallibacterium
anatis UMN179]
Length = 376
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 132/337 (39%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D ++S
Sbjct: 8 QHKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQS-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 66 -LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ I +A Y L S +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNQEIIKRARDISAYYDDLIRDSQLYSLYGEGTYTVDGKEYQ 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + +E QQ++ + A E +A+ G +GLN
Sbjct: 244 TGTQHILNIMAAGQDDPEMAEIAEECQQEAYDLFVAAAEQEKEWANYLFKDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLPLPFTTRSNPIPWINAWL 340
>gi|261493906|ref|ZP_05990416.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261495801|ref|ZP_05992236.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261308535|gb|EEY09803.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261310439|gb|EEY11632.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 376
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 72/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D +
Sbjct: 8 QHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSQDRIDYAQ-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 66 -LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS----------FTTGTKDAD 182
+II ++ D +F+ I +A Y L S + K +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYSLYGEGSYQVDGKTCE 184
Query: 183 QEFL------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + N +E +Q++ + A E A+A G +GLN
Sbjct: 245 GTQHILNIMTYGNDDPEMAEIARECRQEAYELFLSAAEQEKAWAEYLFKDGSMIGLNRDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL FK NP PW++ +
Sbjct: 305 LVQYIEYITNIRMQAVGLPLPFKARSNPIPWINAWL 340
>gi|254361270|ref|ZP_04977413.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
PHL213]
gi|153092766|gb|EDN73809.1| ribonucleoside-diphosphate reductase [Mannheimia haemolytica
PHL213]
Length = 376
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 72/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D +
Sbjct: 8 QHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSQDRIDYAQ-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 66 -LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS----------FTTGTKDAD 182
+II ++ D +F+ I +A Y L S + K +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYSLYGEGSYQVDGKTCE 184
Query: 183 QEFL------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + N +E +Q++ + A E A+A G +GLN
Sbjct: 245 GTQHILNIMAYGNDDPEMAEIARECRQEAYELFLSAAEQEKAWAEYLFKDGSMIGLNRDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL FK NP PW++ +
Sbjct: 305 LVQYIEYITNIRMQAVGLPLPFKARSNPIPWINAWL 340
>gi|170682190|ref|YP_001744431.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
SMS-3-5]
gi|170519908|gb|ACB18086.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli SMS-3-5]
gi|315285847|gb|EFU45287.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 110-3]
gi|315298059|gb|EFU57328.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 16-3]
Length = 393
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 25 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 81
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 82 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 141
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 142 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 201
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 202 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 260
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 261 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 320
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 321 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 357
>gi|300897697|ref|ZP_07116095.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 198-1]
gi|301022393|ref|ZP_07186277.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 69-1]
gi|331683911|ref|ZP_08384507.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli H299]
gi|300358575|gb|EFJ74445.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 198-1]
gi|300397543|gb|EFJ81081.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 69-1]
gi|323967677|gb|EGB63089.1| ribonucleotide reductase [Escherichia coli M863]
gi|331078863|gb|EGI50065.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli H299]
Length = 393
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 25 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 81
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 82 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 141
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 142 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 201
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 202 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 260
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 261 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 320
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 321 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 357
>gi|293392273|ref|ZP_06636607.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290952807|gb|EFE02926.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 376
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 70/336 (20%), Positives = 129/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D +
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
+II ++ + +F+ I +A Y L S T T D +
Sbjct: 125 HIIRNIVNNPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKECV 184
Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ + E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VSLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +E +Q++ + A E +A G +GLN
Sbjct: 245 GTQHILNIMAAGQDDPEMAKIAEECKQEAYDLFLAAAEQEKDWADYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340
>gi|304445703|pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
gi|304445704|pdb|2XOF|B Chain B, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
Length = 375
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 7 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS +
Sbjct: 64 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSXT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339
>gi|283786035|ref|YP_003365900.1| ribonucleoside-diphosphate reductase 1 beta chain [Citrobacter
rodentium ICC168]
gi|282949489|emb|CBG89102.1| ribonucleoside-diphosphate reductase 1 beta chain [Citrobacter
rodentium ICC168]
Length = 376
Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 134/336 (39%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
+II ++ D +F+ I +A Y L + D +
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLDEGTHTVNGKTVT 184
Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244
Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + +E +Q+ + +A L E +A G +GLN
Sbjct: 245 GTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAALQEKEWADYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|262402402|ref|ZP_06078963.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
sp. RC586]
gi|262351184|gb|EEZ00317.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
sp. RC586]
Length = 360
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 71/316 (22%), Positives = 124/316 (39%), Gaps = 25/316 (7%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
KY + + W P EV + D + L D E+ + NL + +S+
Sbjct: 16 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 72
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+ +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I
Sbjct: 73 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHILK 132
Query: 158 KANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFVFYV---------------VFEGMWF 201
+A Y L + + + + + E + F
Sbjct: 133 RAKDIAHYYDDLIQLTNDYHRYGEGQHQINGETVNVSLKNLKKKLYLCLMSVNALEAIRF 192
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEF 257
Y FA + M G A+ + I RDE+LHL ++N ++ +E
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEEC 252
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
+Q+S + EA E +A G +GLN QY+++I N R +GLEP +
Sbjct: 253 KQESFDLFKEAAEQEKEWAAYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPTA 312
Query: 316 TENPFPWMSEVIDLKK 331
T NP PW++ +
Sbjct: 313 TTNPIPWINAWLSSDN 328
>gi|304398198|ref|ZP_07380072.1| ribonucleotide reductase [Pantoea sp. aB]
gi|304354064|gb|EFM18437.1| ribonucleotide reductase [Pantoea sp. aB]
Length = 376
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 74/336 (22%), Positives = 136/336 (40%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF--------TTGTKDADQE 184
+II ++ D +F+ I A+A +Y L + T D
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDLIEMTNYWHQLGEGTHKVNDKQVV 184
Query: 185 FLQDLFVFYVVF--------EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + E +++ + +A L E +A G +GLN
Sbjct: 245 GTQHMLNLLRSGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 305 LCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340
>gi|157144813|ref|YP_001452132.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter
koseri ATCC BAA-895]
gi|157082018|gb|ABV11696.1| hypothetical protein CKO_00540 [Citrobacter koseri ATCC BAA-895]
Length = 376
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 75/336 (22%), Positives = 137/336 (40%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++S
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQS-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 66 -LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y L + T
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISHYYDELIEMTSYWHLLGEGTHNVNGKTVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLT 244
Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + I++P + +E +Q + +A E +A G +GLN
Sbjct: 245 GTQHMLNLLRSGIDDPEMAEIAEESKQACYDLFVQAAQQEKEWADYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GLE F+ NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLELPFQTRSNPIPWINTWL 340
>gi|260913913|ref|ZP_05920387.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC
43325]
gi|260632000|gb|EEX50177.1| ribonucleoside-diphosphate reductase [Pasteurella dagmatis ATCC
43325]
Length = 376
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 70/336 (20%), Positives = 131/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDADQEFL- 186
+II ++ D +F+ I +A Y L + + GT + D +
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEEIIKRAKDISCYYDDLIRDTQLYTLYGEGTYNVDGQECT 184
Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +E +Q++ + A E +A G +GLN
Sbjct: 245 GTQHILNIMASGQDDPEMAEIVEECKQEAYDLFVAAAEQEKEWASYLFKDGSMIGLNRDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340
>gi|261867684|ref|YP_003255606.1| ribonucleotide-diphosphate reductase subunit beta [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261413016|gb|ACX82387.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 376
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D +
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
+II ++ D +F+ I +A Y L S T T D +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKECV 184
Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ + E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VSLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +E +Q++ + A E +A G +GLN
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKDWADYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340
>gi|212716021|ref|ZP_03324149.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM
16992]
gi|212661388|gb|EEB21963.1| hypothetical protein BIFCAT_00933 [Bifidobacterium catenulatum DSM
16992]
Length = 330
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 67/351 (19%), Positives = 132/351 (37%), Gaps = 32/351 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
++PI +R+ + D+ + + N+L K W+ N W+P +VP+ +DL
Sbjct: 1 MAPISVPRQRIKLIDR---VSAINWNKLEDDKDLEVWD---RLTGNFWLPEKVPVSNDLP 54
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+W+ +++ E + R +++ +++ P AF E+V
Sbjct: 55 VWR---AMSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111
Query: 127 HSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ I ++L E F+ E + KA L Y + S
Sbjct: 112 HAKSYSSIFSTLCSTRQIDEAFSWSEENEYLQRKARIVLDYYEGDS-------------- 157
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 158 -PLKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
E + + +L+E E+ Y VGL E+++++ N+
Sbjct: 217 GLERVSEDKRGELRDYTYDLLNELYDNEVEYTRSLYE--PVGLT-QDVEKFLRYNGNKAL 273
Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+G LF NP + + + +FF + Y G ++ D
Sbjct: 274 MNLGYPALFPQEICDVNPSILAALSPNADENHDFFSGSGSSYVMGKSVETD 324
>gi|225351964|ref|ZP_03742987.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157211|gb|EEG70550.1| hypothetical protein BIFPSEUDO_03569 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 330
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 67/351 (19%), Positives = 133/351 (37%), Gaps = 32/351 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
++PI +R+ + D+ + + N+L K W+ N W+P +VP+ +DL
Sbjct: 1 MAPISVPRQRIKLIDR---VSAINWNKLEDDKDLEVWD---RLTGNFWLPEKVPVSNDLP 54
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+W++ +++ E + R +++ +++ P AF E+V
Sbjct: 55 VWRT---MSEAEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111
Query: 127 HSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ I ++L E F+ E + KA L Y + S
Sbjct: 112 HAKSYSSIFSTLCSTRQIDEAFSWSEENEYLQRKARIVLDYYEGDS-------------- 157
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 158 -PLKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
E + + +L+E E+ Y VGL E+++++ N+
Sbjct: 217 GLELVSEDKRGELRDYTYDLLNELYDNEVEYTRSLYE--PVGLT-QDVEKFLRYNGNKAL 273
Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+G LF NP + + + +FF + Y G ++ D
Sbjct: 274 MNLGYPALFPQEICDVNPSILAALSPNADENHDFFSGSGSSYVMGKSVETD 324
>gi|308187586|ref|YP_003931717.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans
C9-1]
gi|308058096|gb|ADO10268.1| ribonucleoside-diphosphate reductase 1 beta chain [Pantoea vagans
C9-1]
Length = 376
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 74/336 (22%), Positives = 136/336 (40%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF--------TTGTKDADQE 184
+II ++ D +F+ I A+A +Y L + T D
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQILARAQDISRYYDDLIEMTNYWHQLGEGTHQVNDKQVV 184
Query: 185 FLQDLFVFYVVF--------EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + E +++ + +A L E +A G +GLN
Sbjct: 245 GTQHMLNLLRSGEDDPEMKEIAAECREECFELFKKAALQEKEWAEYLFSGGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 305 LCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340
>gi|258544274|ref|ZP_05704508.1| ribonucleoside-diphosphate reductase, beta subunit [Cardiobacterium
hominis ATCC 15826]
gi|258520512|gb|EEV89371.1| ribonucleoside-diphosphate reductase, beta subunit [Cardiobacterium
hominis ATCC 15826]
Length = 325
Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats.
Identities = 65/320 (20%), Positives = 127/320 (39%), Gaps = 19/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
Q+ P +Y E + +++W+ TE D+ +K+ +T ER + R + +
Sbjct: 9 RIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYKTV--ITPRERTALTRAMLAIS 66
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +YR+ PE A E H + +++ LG++ E+F+
Sbjct: 67 QVEVSV-KRFWGDLYRYFPKPEIDDVGGTFAESEIRHKDAYSFLLEKLGMN--EMFSQIT 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P++ + + + + + F+ L +F + E + + F I+S
Sbjct: 124 EYPALMRRIEYMEDFMRD---------KDIGRERFVLSLVMFSLFVEHISLFGQFLIIMS 174
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N GI+ + ++E +H FGI + I+ E+P L+T +F + + + + A
Sbjct: 175 FNKHRNLFKGISNAVEATSKEEEIHGRFGIALYGIIRDEHPRLFTPDFYDELQQLANHAL 234
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
E G + + + E Y+ N +G+ + W
Sbjct: 235 EAERGILRWIFEDGDLDFITLDTVENYITNRYNNSLEILGINAPYLVDTKKLRETEWFDI 294
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
I KE +FF R T+Y +
Sbjct: 295 EILSGKEGDFFYKRSTDYSK 314
>gi|61680624|pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
gi|61680625|pdb|1YFD|B Chain B, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
Length = 375
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 7 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS +
Sbjct: 64 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSHT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339
>gi|317048919|ref|YP_004116567.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
gi|316950536|gb|ADU70011.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
Length = 376
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 75/336 (22%), Positives = 134/336 (39%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF--------------TTGT 178
+II ++ D +F+ I A+A +Y L + T T
Sbjct: 125 HIIRNIVNDPSLVFDDIVTNEQILARAQDISKYYDDLIEMTNYWHLLGEGTHQVAGKTVT 184
Query: 179 KDADQEFLQDLFVFYVV--FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
D Q V E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VDLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ K E + + + +A E +A G +GLN
Sbjct: 245 GTQHMLNLMRTGEDDPEMKEIAAECRDECYDLFKKAAEQEKEWAEYLFSGGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 305 LCQYIEYITNIRMQAVGLDLPFQTRSNPIPWINSWL 340
>gi|15602584|ref|NP_245656.1| ribonucleotide-diphosphate reductase subunit beta [Pasteurella
multocida subsp. multocida str. Pm70]
gi|12721013|gb|AAK02803.1| NrdB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 376
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 131/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDADQEFL- 186
+II ++ D +F+ I +A Y L S + GT + D +
Sbjct: 125 HIIRNIVNDPSVIFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYTLYGEGTYNVDGQDCV 184
Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +E +Q++ + A E +A G +GLN
Sbjct: 245 GTQHILNIMASGQDDPEMAEIVEECKQEAYDLFVAAAEQEKEWADYLFKDGSMIGLNRDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340
>gi|205353394|ref|YP_002227195.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|205273175|emb|CAR38137.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|326628485|gb|EGE34828.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9]
Length = 376
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKTVV 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+D ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + +++P + +E +Q+ + +A E +A G +GLN
Sbjct: 244 TGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|296455120|ref|YP_003662264.1| ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
longum JDM301]
gi|296184552|gb|ADH01434.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
longum JDM301]
Length = 330
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 67/351 (19%), Positives = 131/351 (37%), Gaps = 32/351 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+
Sbjct: 1 MAPISIPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W+ +T+DE + R +++ +++ P AF E+V
Sbjct: 55 SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111
Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ I ++L E F+ + KA L Y + +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ + Q + +L+E E+ Y + VGL E+++++ N+
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGLT-DDVEKFLRYNGNKAL 273
Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+G LF NP S + + +FF + Y G + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILASLSPNADENHDFFSGSGSSYVMGKAEETD 324
>gi|311085920|gb|ADP66002.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
aphidicola str. LL01 (Acyrthosiphon pisum)]
gi|311086491|gb|ADP66572.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
aphidicola str. TLW03 (Acyrthosiphon pisum)]
gi|311087626|gb|ADP67705.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
aphidicola str. JF98 (Acyrthosiphon pisum)]
Length = 359
Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats.
Identities = 68/315 (21%), Positives = 122/315 (38%), Gaps = 24/315 (7%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
KY + + W P E+ + D ++ L D+E+ + NL + +S+
Sbjct: 16 KYKIFEQLIEKQLSFFWRPEEIDLSRDRIDFQ---NLPDNEKHIFISNLKYQTLLDSIQG 72
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+ +A +S PE ++ +F E +HS ++ +II ++ +F+ +I
Sbjct: 73 RSPNIAFLPIISIPELETWIETWSFSETIHSRSYTHIIRNIVNCPSLVFDDIISNKNIYD 132
Query: 158 KANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFVFYV---------------VFEGMWF 201
+A Y L + + + + + V E + F
Sbjct: 133 RAQNISIYYDELINLTSYWHLLGEGIHLINGKKIHINLRFLKKRLYLCLISVNVLEAIRF 192
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV----INQIKIENPHLWTKEF 257
Y FA + M G A+ + I RDE+LHL + N EN E
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHILNLLSNIKNNENMEDVVLEC 252
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++++ + A E +A G +GLN QY+++I N R H IG + FK
Sbjct: 253 KEEAINIFISAAQQEKKWASYLFKSGSMLGLNKDILCQYIEYITNIRMHAIGFKMPFKKQ 312
Query: 317 ENPFPWMSEVIDLKK 331
NP PW+++ +
Sbjct: 313 SNPIPWINDWLTSDN 327
>gi|56412825|ref|YP_149900.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|197361758|ref|YP_002141394.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|56127082|gb|AAV76588.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|197093234|emb|CAR58679.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
Length = 376
Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats.
Identities = 70/337 (20%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIETTSYWHLLGEGTHTVNGKTVV 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + +++P + +E +Q+ + +A E +A G +GLN
Sbjct: 244 TGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|23465253|ref|NP_695856.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
longum NCC2705]
gi|23325884|gb|AAN24492.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium
longum NCC2705]
Length = 330
Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats.
Identities = 66/351 (18%), Positives = 130/351 (37%), Gaps = 32/351 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+
Sbjct: 1 MAPISIPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W+ +T+DE + R +++ +++ P AF E+V
Sbjct: 55 SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111
Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ I ++L E F+ + KA L Y + +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ + Q + +L+E E+ Y VGL E+++++ N+
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDC--VGLT-DDVEKFLRYNGNKAL 273
Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+G LF NP + + + +FF + Y G + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324
>gi|145633337|ref|ZP_01789068.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
influenzae 3655]
gi|144986183|gb|EDJ92773.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
influenzae 3655]
Length = 376
Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats.
Identities = 72/336 (21%), Positives = 130/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D +
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
+II ++ D +F+ I +A Y L S T T D +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYGEGTYTVDGKKCV 184
Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ + E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +E +Q++ + A E A+A G +GLN
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNRDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340
>gi|261211025|ref|ZP_05925315.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
sp. RC341]
gi|260840000|gb|EEX66600.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
sp. RC341]
Length = 360
Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats.
Identities = 71/316 (22%), Positives = 124/316 (39%), Gaps = 25/316 (7%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
KY + + W P EV + D + L D E+ + NL + +S+
Sbjct: 16 KYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---GKLPDHEKHIFISNLKYQTLLDSIQG 72
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+ +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ E I
Sbjct: 73 RSPNVALLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPAVVFDDIVENEHIIK 132
Query: 158 KANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFVFYV---------------VFEGMWF 201
+A Y L + + + + + E + F
Sbjct: 133 RAKDIAHYYDDLIQLTNDYHRYGEGQHQINGETINVSLKNLKKKLYLCLMSVNALEAIRF 192
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEF 257
Y FA + M G A+ + I RDE+LHL ++N ++ +E
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEEC 252
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-Y 315
+Q+S + EA E +A G +GLN QY+++I N R +GLEP +
Sbjct: 253 KQESFDLFKEAAEQEKEWAAYLFKDGSMIGLNRDILCQYVEYITNIRMQAVGLEPAYPTA 312
Query: 316 TENPFPWMSEVIDLKK 331
T NP PW++ +
Sbjct: 313 TTNPIPWINAWLSSDN 328
>gi|16273547|ref|NP_439802.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae Rd KW20]
gi|68250262|ref|YP_249374.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae 86-028NP]
gi|145629252|ref|ZP_01785051.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae 22.1-21]
gi|145631490|ref|ZP_01787259.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae R3021]
gi|145639184|ref|ZP_01794791.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae PittII]
gi|145641092|ref|ZP_01796673.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae R3021]
gi|260581255|ref|ZP_05849073.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
influenzae RdAW]
gi|260582634|ref|ZP_05850423.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
influenzae NT127]
gi|319776092|ref|YP_004138580.1| ribonucleoside-diphosphate reductase subunit beta [Haemophilus
influenzae F3047]
gi|319896901|ref|YP_004135096.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
influenzae F3031]
gi|329123256|ref|ZP_08251824.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
aegyptius ATCC 11116]
gi|1172943|sp|P43755|RIR2_HAEIN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|1574510|gb|AAC23306.1| ribonucleoside diphosphate reductase, beta chain (nrdB)
[Haemophilus influenzae Rd KW20]
gi|68058461|gb|AAX88714.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
influenzae 86-028NP]
gi|144978755|gb|EDJ88478.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae 22.1-21]
gi|144982920|gb|EDJ90433.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae R3021]
gi|145271746|gb|EDK11656.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae PittII]
gi|145274253|gb|EDK14118.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae 22.4-21]
gi|260092082|gb|EEW76027.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
influenzae RdAW]
gi|260094306|gb|EEW78205.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
influenzae NT127]
gi|301170418|emb|CBW30024.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
[Haemophilus influenzae 10810]
gi|309750762|gb|ADO80746.1| Ribonucleoside diphosphate reductase 1, beta subunit [Haemophilus
influenzae R2866]
gi|309972945|gb|ADO96146.1| Ribonucleoside diphosphate reductase 1, beta subunit [Haemophilus
influenzae R2846]
gi|317432405|emb|CBY80760.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
influenzae F3031]
gi|317450683|emb|CBY86903.1| ribonucleoside-diphosphate reductase beta chain [Haemophilus
influenzae F3047]
gi|327471465|gb|EGF16913.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
aegyptius ATCC 11116]
Length = 376
Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats.
Identities = 72/336 (21%), Positives = 130/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D +
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
+II ++ D +F+ I +A Y L S T T D +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYGEGTYTVDGKECV 184
Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ + E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +E +Q++ + A E A+A G +GLN
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNRDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340
>gi|193062401|ref|ZP_03043496.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli E22]
gi|192932067|gb|EDV84666.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli E22]
Length = 393
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 70/337 (20%), Positives = 136/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 25 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 81
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 82 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 141
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 142 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 201
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 202 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 260
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E + + + +A E +A G +GLN
Sbjct: 261 TGTQHMLNLLRSGADDPEMAEIAEECKLECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 320
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 321 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 357
>gi|3891570|pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
gi|3891571|pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
Length = 340
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 72/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 7 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS +F
Sbjct: 64 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339
>gi|3891582|pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli
gi|3891583|pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli
Length = 340
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 7 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 64 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339
>gi|113970253|ref|YP_734046.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
MR-4]
gi|114047558|ref|YP_738108.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
MR-7]
gi|113884937|gb|ABI38989.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Shewanella sp. MR-4]
gi|113889000|gb|ABI43051.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Shewanella sp. MR-7]
Length = 376
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 72/337 (21%), Positives = 133/337 (39%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + M +S +V + KY + + W P EV + D + S
Sbjct: 8 QTPNDATREPMFFGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDYNS-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 66 -LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ I +A +Y L +
Sbjct: 125 HIIRNIVNDPSVIFDDIVVNQEILRRATDIAEYYDHLIKLTQVYHLLGEGTHVIDGEPIE 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
T+ + + + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNTRTLKKALYLCMMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
N ++ ++ ++P + E QQ++ + +A E +A G +GLN
Sbjct: 244 NSTQHILTIMQAGKDDPEMGEIAAECQQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQ 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N+R + L + NP PWM +
Sbjct: 304 ILCQYVEYITNQRMKSVNLPQPYAEQSNPLPWMKNWL 340
>gi|213693323|ref|YP_002323909.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213524784|gb|ACJ53531.1| Ribonucleoside-diphosphate reductase [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320459505|dbj|BAJ70126.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
longum subsp. infantis ATCC 15697]
Length = 330
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 67/351 (19%), Positives = 131/351 (37%), Gaps = 32/351 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+
Sbjct: 1 MAPISIPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W+ +T+DE + R +++ +++ P AF E+V
Sbjct: 55 SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111
Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ I ++L E F+ + KA L Y + +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ + Q + +L+E E+ Y + VGL E+++++ N+
Sbjct: 217 GIAQLGDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGLT-DDVEKFLRYNGNKAL 273
Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+G LF NP S + + +FF + Y G + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILASLSPNADENHDFFSGSGSSYVMGKAEETD 324
>gi|296103863|ref|YP_003614009.1| ribonucleotide-diphosphate reductase beta subunit [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295058322|gb|ADF63060.1| ribonucleotide-diphosphate reductase beta subunit [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 376
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 72/336 (21%), Positives = 135/336 (40%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y L + T
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGIAHYYDELIEMTSYWHLLGEGTHNVNGKTVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLT 244
Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + +E +Q+ + A E +A G +GLN
Sbjct: 245 GTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|251792451|ref|YP_003007177.1| ribonucleotide-diphosphate reductase subunit beta [Aggregatibacter
aphrophilus NJ8700]
gi|315634378|ref|ZP_07889665.1| ribonucleotide-diphosphate reductase beta subunit [Aggregatibacter
segnis ATCC 33393]
gi|247533844|gb|ACS97090.1| ribonucleoside-diphosphate reductase, beta subunit [Aggregatibacter
aphrophilus NJ8700]
gi|315476968|gb|EFU67713.1| ribonucleotide-diphosphate reductase beta subunit [Aggregatibacter
segnis ATCC 33393]
Length = 376
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D +
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
+II ++ D +F+ I +A Y L S T T D +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYSLYGEGTYTVDGKECV 184
Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ + E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +E +Q++ + A E +A G +GLN
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKDWADYLFKDGSMIGLNRDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340
>gi|117619492|ref|YP_856857.1| ribonucleotide-diphosphate reductase subunit beta [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117560899|gb|ABK37847.1| ribonucleoside-diphosphate reductase, beta subunit [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 377
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 71/334 (21%), Positives = 130/334 (38%), Gaps = 26/334 (7%)
Query: 21 DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ M +S +V + K+ + W P EV + D ++ L E+
Sbjct: 15 KEPMFFGQSVNVARYDQQKHEVFERLIEKQLSFFWRPEEVDVSHDRIDFQ---ALPPHEQ 71
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
+ NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II ++
Sbjct: 72 HIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWAFSETIHSRSYTHIIRNIV 131
Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPS----------------FTTGTKDADQ 183
++F+ I +A + L + T T +
Sbjct: 132 NTPAQVFDDIVTNEQILKRAGSISHFYDDLIEATALYNLHGEGTHRVAGRDVTITLRELK 191
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ L + E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 192 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLTGTQHMLN 251
Query: 244 QIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
++ E +Q + EA + E +A G +GLN QY+++
Sbjct: 252 LMRSGQDDPEMAEIAAECEQACFELFKEAAIQEKEWAEYLFQDGSMIGLNKDILCQYVEY 311
Query: 299 IANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK 331
I N R + +GL+P F +NP PW++ +
Sbjct: 312 ITNLRMNAVGLQPAFAGAKQNPIPWINTWLSSDN 345
>gi|16765605|ref|NP_461220.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|62180851|ref|YP_217268.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161613001|ref|YP_001586966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Paratyphi B str. SPB7]
gi|167549728|ref|ZP_02343487.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167992612|ref|ZP_02573709.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168237293|ref|ZP_02662351.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168242393|ref|ZP_02667325.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168261709|ref|ZP_02683682.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168466025|ref|ZP_02699895.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168817991|ref|ZP_02829991.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194442577|ref|YP_002041539.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194449379|ref|YP_002046332.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194735273|ref|YP_002115349.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197247637|ref|YP_002147234.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197262505|ref|ZP_03162579.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|198242288|ref|YP_002216347.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|200387602|ref|ZP_03214214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204929071|ref|ZP_03220214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|207857697|ref|YP_002244348.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|213161593|ref|ZP_03347303.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|224583238|ref|YP_002637036.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|1172945|sp|P37427|RIR2_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 1 subunit beta;
AltName: Full=Protein B2; AltName: Full=Protein R2;
AltName: Full=Ribonucleotide reductase 1
gi|510349|emb|CAA51453.1| nrdB [Salmonella enterica subsp. enterica serovar Typhimurium]
gi|16420817|gb|AAL21179.1| ribonucleoside-diphosphate reductase 1, beta subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|62128484|gb|AAX66187.1| ribonucleoside-diphosphate reductase 1, beta subunit [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161362365|gb|ABX66133.1| hypothetical protein SPAB_00707 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401240|gb|ACF61462.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194407683|gb|ACF67902.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194710775|gb|ACF89996.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195631367|gb|EDX49927.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197211340|gb|ACH48737.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197240760|gb|EDY23380.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197289678|gb|EDY29041.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197936804|gb|ACH74137.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199604700|gb|EDZ03245.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204321615|gb|EDZ06814.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205325266|gb|EDZ13105.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205329222|gb|EDZ15986.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205338588|gb|EDZ25352.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205344845|gb|EDZ31609.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205349363|gb|EDZ35994.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|206709500|emb|CAR33844.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|224467765|gb|ACN45595.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|261247486|emb|CBG25313.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
enterica subsp. enterica serovar Typhimurium str.
D23580]
gi|267994368|gb|ACY89253.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhimurium str.
14028S]
gi|301158836|emb|CBW18349.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|312913268|dbj|BAJ37242.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhimurium str.
T000240]
gi|320086715|emb|CBY96487.1| ribonucleoside diphosphage reductase 1, beta subunit, B2
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|321223022|gb|EFX48093.1| Ribonucleotide reductase of class Ia aerobic, beta subunit
[Salmonella enterica subsp. enterica serovar Typhimurium
str. TN061786]
gi|322617030|gb|EFY13936.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322617664|gb|EFY14563.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322624706|gb|EFY21535.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322630255|gb|EFY27025.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322634436|gb|EFY31169.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322639146|gb|EFY35838.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322640143|gb|EFY36809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322645769|gb|EFY42293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322651544|gb|EFY47919.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322656105|gb|EFY52404.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322659457|gb|EFY55704.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322665919|gb|EFY62102.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322669843|gb|EFY65984.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322673828|gb|EFY69925.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322678586|gb|EFY74642.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322683618|gb|EFY79632.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322687694|gb|EFY83664.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|322715327|gb|EFZ06898.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Choleraesuis str. A50]
gi|323130608|gb|ADX18038.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhimurium str. 4/74]
gi|323196209|gb|EFZ81366.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323198377|gb|EFZ83479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323204185|gb|EFZ89196.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323208571|gb|EFZ93510.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323212337|gb|EFZ97160.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323218256|gb|EGA02966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323222986|gb|EGA07335.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323227421|gb|EGA11586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323232251|gb|EGA16354.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323235716|gb|EGA19800.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323241124|gb|EGA25160.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323244866|gb|EGA28868.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323248577|gb|EGA32508.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323251597|gb|EGA35465.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323255474|gb|EGA39237.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323263076|gb|EGA46622.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323268136|gb|EGA51613.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323270771|gb|EGA54209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326624097|gb|EGE30442.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Dublin str. 3246]
gi|332989211|gb|AEF08194.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
Length = 376
Score = 156 bits (393), Expect = 7e-36, Method: Composition-based stats.
Identities = 70/337 (20%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKTVV 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + +++P + +E +Q+ + +A E +A G +GLN
Sbjct: 244 TGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|163748931|ref|ZP_02156182.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella
benthica KT99]
gi|161331307|gb|EDQ02195.1| ribonucleotide-diphosphate reductase beta subunit [Shewanella
benthica KT99]
Length = 376
Score = 156 bits (393), Expect = 7e-36, Method: Composition-based stats.
Identities = 83/346 (23%), Positives = 135/346 (39%), Gaps = 37/346 (10%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
NN L P+ G+ VNV AR DV KY + + W P EV +
Sbjct: 11 NNACLEPMFMGQS-VNV-------ARYDVQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L D E+ + NL + +S+ + +A +S PE ++ +F
Sbjct: 58 KDKIDY---AALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS------------ 170
E +HS ++ +II ++ D +F+ + I +A QY L
Sbjct: 115 SETIHSRSYTHIIRNIVNDPSIIFDDIVKNEEILKRATDIAQYYDDLILLTQAFHLHGEG 174
Query: 171 ----SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
+ T+ ++ L V V E + FY FA + N M G A+ +
Sbjct: 175 THIVNGKELLVTQRTIKKSLYLCMVSVNVLEAIRFYVSFACSFAFAERNVMEGNAKIIRL 234
Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS----RTMLHEATLLEIAYAHETMPK 282
I RDE+LHLN ++ ++ E ++ + +A E +A
Sbjct: 235 IARDEALHLNSTQHILKIMRAGVDDPEMGEIAEECEQLAYDIFVKAAEQEKEWAQYLFKD 294
Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
G +GLN QY+++I N R + L P + NP PWM +
Sbjct: 295 GSMIGLNEAILCQYVEYITNERMKSVNLTPHYDEITNPLPWMKNWL 340
>gi|1941986|pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
gi|1941987|pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
Length = 340
Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 7 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 64 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVAFACSFAFAERELMEGNAKIIRLIARDEALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 339
>gi|332974578|gb|EGK11498.1| ribonucleotide-diphosphate reductase beta subunit [Kingella kingae
ATCC 23330]
Length = 384
Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 75/338 (22%), Positives = 132/338 (39%), Gaps = 28/338 (8%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
N + M + +V + KY + + W P EV + D + L D
Sbjct: 19 NPLTEPMFFGQPVNVARYDQQKYEVFEKLIEKQISFFWRPEEVDLSRDRIDY---ANLPD 75
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + NL + +S+ + + +S PE ++ AF E +HS ++ +II
Sbjct: 76 HEKHIFISNLKYQTLLDSIQGRSPNVGFLPLVSIPELETWIETWAFFETIHSRSYTHIIR 135
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FTTGTK 179
++ D +F+ + I A+A Y L + T +
Sbjct: 136 NIVNDPSVVFDDIVQNDYIIARAEDIACYYDDLIEYTQYFNLLGEGKHTVNGKEITISLR 195
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ ++ L V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 196 ELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQ 254
Query: 240 DVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
++N ++ L E Q + + +A E +A G +GLN Q
Sbjct: 255 HMLNLMRSGVDDLDMAEIAAELQDECFELFKKAAEQEKEWAAYLFKDGSMIGLNKDILCQ 314
Query: 295 YMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
Y+++I N R +GL+ F T+NP PW++ +
Sbjct: 315 YVEYITNHRMLAVGLQAAFPQATQNPIPWINAWLSSDN 352
>gi|238021387|ref|ZP_04601813.1| hypothetical protein GCWU000324_01286 [Kingella oralis ATCC 51147]
gi|237868367|gb|EEP69373.1| hypothetical protein GCWU000324_01286 [Kingella oralis ATCC 51147]
Length = 384
Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 134/343 (39%), Gaps = 28/343 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ N + M + +V + KY + + W P EV + D +
Sbjct: 14 PKTPNNALLEPMFLGQPVNVARYDQQKYETFEKLIEKQISFFWRPEEVDLSRDRIDY--- 70
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + + + +S PE ++ +F E +HS ++
Sbjct: 71 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVGLLPLVSLPELETWIETWSFFETIHSRSY 130
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-----------------SF 174
+II ++ D +F+ + I A+A Y L +
Sbjct: 131 THIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYFNLLGVGEHRVNGKTI 190
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
++ ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 191 VVSERELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 250 LTSTQHMLNLMRGGAEGAEWAEIAAELQNECFELFKKAAEQEKEWAEYLFKDGSMIGLNK 309
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
QY+++I N R +GL+P F+ T+NP PW++ +
Sbjct: 310 DILCQYVEYITNARMLAVGLQPAFEKATQNPIPWINTWLSSDN 352
>gi|168229641|ref|ZP_02654699.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|194471700|ref|ZP_03077684.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|238913487|ref|ZP_04657324.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Tennessee str.
CDC07-0191]
gi|194458064|gb|EDX46903.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|205335835|gb|EDZ22599.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
Length = 376
Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 139/337 (41%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-----------------SSPSFT 175
+II ++ D +F+ I +A Y L +S +
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNSKTVV 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + +++P + +E +Q+ + +A E +A G +GLN
Sbjct: 244 TGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|113461104|ref|YP_719172.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
somnus 129PT]
gi|170717681|ref|YP_001784756.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
somnus 2336]
gi|112823147|gb|ABI25236.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Haemophilus somnus 129PT]
gi|168825810|gb|ACA31181.1| Ribonucleoside-diphosphate reductase [Haemophilus somnus 2336]
Length = 376
Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 72/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M +V + KY + + W P EV + D ++
Sbjct: 8 QTKNNQLLEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG--------------- 177
+II ++ D +F+ I +A Y L S G
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRARDISSYYDDLIRDSQLYGLYGEGTYTVDGKACK 184
Query: 178 -TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
T + L + E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +E +Q++ + A E +A G +GLN
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYELFVAAAEQEKEWADYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340
>gi|16761204|ref|NP_456821.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
gi|29141101|ref|NP_804443.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|25285831|pir||AD0791 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503503|emb|CAD07510.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
enterica subsp. enterica serovar Typhi]
gi|29136727|gb|AAO68292.1| ribonucleoside-diphosphate reductase 1 beta chain [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
Length = 376
Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats.
Identities = 70/337 (20%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVNDPAIVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKTVV 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + +++P + +E +Q+ + +A E +A G +GLN
Sbjct: 244 TGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFRDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|256422447|ref|YP_003123100.1| ribonucleotide reductase [Chitinophaga pinensis DSM 2588]
gi|256037355|gb|ACU60899.1| ribonucleotide reductase [Chitinophaga pinensis DSM 2588]
Length = 324
Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats.
Identities = 69/320 (21%), Positives = 125/320 (39%), Gaps = 18/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
Q P +Y + + + W+ EV D + S L ER ++ +L A
Sbjct: 7 RLQYKPFEYPEVLQFTEAINKSFWVHAEVDFTADTQDFHSH--LNPAERTAVRNSLLAIA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E + +Y HL PE A E HS + ++ LG + F
Sbjct: 65 QIEV-AVKSFWGNLYNHLPKPEMNGLGSTFAECEFRHSEAYSRLVEVLGYNSQ--FEKLV 121
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
EVP I + + S + + +E+ L +F ++ E + ++ FA ILS
Sbjct: 122 EVPVIRQRIEYL--------SDALSNAKSTDTREYTISLILFSILIENVSLFSQFAIILS 173
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
R M ++ + DE +H N GI +IN+I+ E P ++ + + ++ E+
Sbjct: 174 FTRFKGLMKNVSNIIAWTSVDEQIHANAGIYLINKIREEYPEMFDEATITRVSNLVKESI 233
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
+E +G + ++ +M++ A+ +I L LF + P W E
Sbjct: 234 EVESNILDWIFSEGKIDTVSKEHLVNFMKYRADDSLKKINLPALFNISTEDNKPMLWFEE 293
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
+ +FF R +Y +
Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313
>gi|152971181|ref|YP_001336290.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|206577425|ref|YP_002237361.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
pneumoniae 342]
gi|262043285|ref|ZP_06016416.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288934289|ref|YP_003438348.1| ribonucleotide reductase [Klebsiella variicola At-22]
gi|330000612|ref|ZP_08303755.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
MS 92-3]
gi|150956030|gb|ABR78060.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|206566483|gb|ACI08259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
pneumoniae 342]
gi|259039384|gb|EEW40524.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288889018|gb|ADC57336.1| ribonucleotide reductase [Klebsiella variicola At-22]
gi|328537954|gb|EGF64133.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
MS 92-3]
Length = 376
Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats.
Identities = 71/329 (21%), Positives = 134/329 (40%), Gaps = 27/329 (8%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M + +V + KY + + W P EV + D ++ L + E+
Sbjct: 16 EPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II ++
Sbjct: 73 IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVN 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFTTGTKDADQ 183
D +F+ I +A Y +L + T ++ +
Sbjct: 133 DPATVFDDIVTNEQIQKRAEGISHYYDSLIEMTSYWHLLGEGTHTVNGKTVTVNLRELKK 192
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ L + E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 193 KLYLCLMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLTGTQHMLN 251
Query: 244 --QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
+ ++P + +E +Q+ + A E +A G +GLN QY+++
Sbjct: 252 LLRSGSDDPEMAEIAEECKQECYDLFVLAAQQEKEWADYLFRDGSMIGLNKDILCQYVEY 311
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVI 327
I N R +GL+ F+ NP PW++ +
Sbjct: 312 ITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|257454213|ref|ZP_05619483.1| ribonucleoside-diphosphate reductase, beta subunit [Enhydrobacter
aerosaccus SK60]
gi|257448386|gb|EEV23359.1| ribonucleoside-diphosphate reductase, beta subunit [Enhydrobacter
aerosaccus SK60]
Length = 377
Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats.
Identities = 72/342 (21%), Positives = 139/342 (40%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + K+ + + W P E+ + D + +
Sbjct: 8 QTKNDPLLEPMFFGQPVNVARYDQQKFPVFEQLIEKQLSFFWRPEEIDVSKDRLDF---S 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L+ E+ + NL + +S+ + + +S PE ++ +F E +HS ++
Sbjct: 65 NLSVHEQHIFLSNLKYQTLLDSIQGRSPNAVLLPLVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
+II ++ D ++F+ + P I +A ++ +
Sbjct: 125 HIIRNVVNDPSKVFDDIVDNPFILERATGIAKFYDELYQLSQLYNLYGEGRHVIDGKPVE 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+ + L V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRLLKTKLYLCLVAINVL-EAIRFYVSFACSFAFAERKLMEGNAKIIKMIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
N +IN Q ++P + ++ QQ++ + +A E A+A G +GLN
Sbjct: 244 NGTQHMINLMQWGKDDPDMVEIAQDCQQQAIEIFKDAAEQEKAWAKYLFKNGSMIGLNEN 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK 331
QY+++I N R IGL P+F NP PW++ +
Sbjct: 304 ILVQYVEYITNLRMDAIGLPPIFAAIKNNPIPWINAWLSSDN 345
>gi|239622882|ref|ZP_04665913.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Bifidobacterium longum subsp. infantis CCUG 52486]
gi|312133660|ref|YP_004000999.1| nrdf [Bifidobacterium longum subsp. longum BBMN68]
gi|317482331|ref|ZP_07941351.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA]
gi|322690138|ref|YP_004209872.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
longum subsp. infantis 157F]
gi|239514879|gb|EEQ54746.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Bifidobacterium longum subsp. infantis CCUG 52486]
gi|291517762|emb|CBK71378.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Bifidobacterium longum subsp. longum F8]
gi|311772922|gb|ADQ02410.1| NrdF [Bifidobacterium longum subsp. longum BBMN68]
gi|316916211|gb|EFV37613.1| ribonucleotide reductase [Bifidobacterium sp. 12_1_47BFAA]
gi|320461474|dbj|BAJ72094.1| ribonucleotide-diphosphate reductase beta subunit [Bifidobacterium
longum subsp. infantis 157F]
Length = 330
Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats.
Identities = 66/351 (18%), Positives = 131/351 (37%), Gaps = 32/351 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+
Sbjct: 1 MAPISIPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W+ +T+DE + R +++ +++ P AF E+V
Sbjct: 55 SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111
Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ I ++L E F+ + KA L Y + +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ + Q + +L+E E+ Y + VGL E+++++ N+
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGLT-DDVEKFLRYNGNKAL 273
Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+G LF NP + + + +FF + Y G + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324
>gi|90412217|ref|ZP_01220223.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
profundum 3TCK]
gi|90326941|gb|EAS43326.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
profundum 3TCK]
Length = 377
Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats.
Identities = 71/335 (21%), Positives = 136/335 (40%), Gaps = 28/335 (8%)
Query: 21 DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ M +S +V + K+ + + W P EV + D + N L + E+
Sbjct: 15 KEPMFFGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSGDRIDY---NNLPEHEK 71
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
+ NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II ++
Sbjct: 72 HIFISNLKYQTLLDSIQGRSPNVALLPIVSIPELETWIETWSFSETIHSRSYTHIIRNIV 131
Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTL-----------------SSPSFTTGTKDAD 182
D +F+ E I +A +Y L + + T ++
Sbjct: 132 NDPAIVFDDIVENDYIIKRAGDISKYYDDLIAATSDYHRLGEGKHTVNGETITVNLREIK 191
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
++ + + E + FY FA + M G A+ + I RDE+LHL ++
Sbjct: 192 KKLYVCMMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHIL 250
Query: 243 NQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQ 297
N ++ + +E QQ+ + EA E +A G +GLN QY++
Sbjct: 251 NLLRGRHDDPEMADIAQECQQECFEIFKEAAEQEKEWAEYLFKDGSMIGLNKEILCQYVE 310
Query: 298 FIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
+I N R +GL+ + +NP PW++ +
Sbjct: 311 YITNLRMKAVGLDQAYPGANQNPIPWINSWLSSDN 345
>gi|319779630|ref|YP_004130543.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Taylorella equigenitalis MCE9]
gi|317109654|gb|ADU92400.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Taylorella equigenitalis MCE9]
Length = 377
Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats.
Identities = 73/341 (21%), Positives = 134/341 (39%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ N + M +S +V + KY + + W P E+ + D +
Sbjct: 8 QTPNNALKEPMFFGQSVNVARYDQQKYEIFEKLIEKQLSFFWRPEEIDVSQDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
GL D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 65 GLPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS----------FTTGTKDAD 182
+II ++ +D +F+ I +A +Y L + ++
Sbjct: 125 HIIRNISVDPSSIFDDIVRNKHILERAQDISKYYDELIELTQFYEMFGEGVHNVNGREIK 184
Query: 183 QEFL------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ V E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSIYELKKRLYLCLMAVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIK--IENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + E + + + A E A+A G +GLN
Sbjct: 245 STQHMLNIMSSGADDPEMAHIASELKNQCFELFKSAAEQEKAWAEYLFKDGSMIGLNKEI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK 331
QY+++I N R +GLE F ++ NP PW++ +
Sbjct: 305 LIQYVEYITNIRMSAVGLEEAFPQSKQNPIPWINTWLTSDN 345
>gi|256832970|ref|YP_003161697.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM
20603]
gi|256686501|gb|ACV09394.1| Ribonucleoside-diphosphate reductase [Jonesia denitrificans DSM
20603]
Length = 325
Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats.
Identities = 69/351 (19%), Positives = 131/351 (37%), Gaps = 37/351 (10%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
++ + D+ + N++ K W+ N W+P +VP+ +D+ W +
Sbjct: 1 MSTGKIKLIDR---VTAINWNRIEDDKDLEVWD---RLVGNFWVPEKVPVSNDIQSWAT- 53
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
LT E+ + R +++ +++ P L AF E+VH+ ++
Sbjct: 54 --LTPQEQELTTRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSY 111
Query: 132 QYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
I ++L E F E P + KA L+Y +
Sbjct: 112 STIFSTLISTPEIDEAFRWSEENPHLQRKAEIILEYYRGDD---------------PLKR 156
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 157 KVASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEAV 216
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
+E + + +L+E E+AY VGL ++++++ AN+ +G
Sbjct: 217 TPERREELKAYTFDLLYELYDNEVAYTESLYDG--VGLT-EDVKKFLRYNANKALLNLGY 273
Query: 310 EPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
E LF E NP + + + +FF + Y G + WD
Sbjct: 274 EALFPKDETDVNPAILSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324
>gi|119774862|ref|YP_927602.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
amazonensis SB2B]
gi|119767362|gb|ABL99932.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Shewanella amazonensis SB2B]
Length = 391
Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats.
Identities = 73/336 (21%), Positives = 128/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + M +S +V + +Y + + W P EV + D +
Sbjct: 23 QTPNDATREPMFFGQSVNVARYDQQRYEVFEKLIEKQLSFFWRPEEVDVSRDKIDF---G 79
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D ER + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 80 KLPDHERHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 139
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-------FTTGTKDADQEF 185
+II ++ D +F+ I +A Y L + T T D
Sbjct: 140 HIIRNIVNDPSSVFDDIVVNEEILKRAGDISAYYDELIKLTQIYHLHGEGTHTVDGHVVD 199
Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ + E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 200 VTVRALKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLN 259
Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ E QQ++ + A E +A G +GLN
Sbjct: 260 STQHILNIMQGGKDDAEMAEIAIECQQEAYDLFLRAAEQEKEWAKYLFKDGSMIGLNEQI 319
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N+R + L + + NP PWM +
Sbjct: 320 LCQYVEYITNQRMKSVNLPLPYPESTNPLPWMKNWL 355
>gi|145634465|ref|ZP_01790175.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
influenzae PittAA]
gi|229845068|ref|ZP_04465204.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae 6P18H1]
gi|229846892|ref|ZP_04466999.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae 7P49H1]
gi|145268445|gb|EDK08439.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
influenzae PittAA]
gi|229810381|gb|EEP46100.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae 7P49H1]
gi|229812040|gb|EEP47733.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae 6P18H1]
Length = 376
Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats.
Identities = 73/336 (21%), Positives = 131/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D +
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
+II ++ D +F+ I +A Y L S T T D +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYSEGTYTVDGKECV 184
Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ + E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + L +E +Q++ + A E A+A G +GLN
Sbjct: 245 GTQHILNIMAAGQDDLEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNRDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340
>gi|114563305|ref|YP_750818.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
frigidimarina NCIMB 400]
gi|114334598|gb|ABI71980.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Shewanella frigidimarina NCIMB 400]
Length = 376
Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats.
Identities = 69/336 (20%), Positives = 129/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + M +S +V + KY + + W P EV + D +
Sbjct: 8 QTPNDSTKEPMFFGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDF---G 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 65 NLPEHEQHIFLSNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
+II ++ + +F+ + I +A Y L + + +
Sbjct: 125 HIIRNIVNNPSLVFDDIVQNDEILKRAGDIAAYYDDLINLTQINNLLGEGTHIINGKEIT 184
Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 185 VNSRILKKSLYLCMMSVNALEAIRFYVSFACSFAFAERRVMEGNAKIIRLIARDEALHLN 244
Query: 237 FGIDVI--NQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++ Q ++P + E +Q++ + +A E +A G +GLN
Sbjct: 245 STQHILALMQGGKDDPEMGEIAAECKQEAYDLFVKAAEQEKEWAKYLFKDGSMIGLNEQI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY++FI N+R + L + NP PWM +
Sbjct: 305 LCQYVEFITNQRMKSVHLPQPYDEQSNPLPWMKNWL 340
>gi|24373963|ref|NP_718006.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
oneidensis MR-1]
gi|24348405|gb|AAN55450.1|AE015682_5 ribonucleoside-diphosphate reductase, beta subunit [Shewanella
oneidensis MR-1]
Length = 376
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 133/337 (39%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + M +S +V + KY + + W P EV + D + S
Sbjct: 8 QTPNDATREPMFFGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDYNS-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 66 -LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ I +A ++ L +
Sbjct: 125 HIIRNIVNDPSVIFDDIVVNHEILRRATDIAEFYDHLIKLTQIYHLLGEGTHVIDGEPVE 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
T+ + + + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNTRTLKKALYLCMMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
N ++ ++ ++P + E QQ++ + +A E +A G +GLN
Sbjct: 244 NSTQHILTIMQGGKDDPEMGEIAIECQQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQ 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N+R + L + NP PWM +
Sbjct: 304 ILCQYVEYITNQRMKSVNLPQPYAEQTNPLPWMKNWL 340
>gi|83754022|pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space
Group P6(1)22
Length = 340
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 244 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|269957220|ref|YP_003327009.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica
DSM 15894]
gi|269305901|gb|ACZ31451.1| Ribonucleoside-diphosphate reductase [Xylanimonas cellulosilytica
DSM 15894]
Length = 326
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 67/350 (19%), Positives = 131/350 (37%), Gaps = 37/350 (10%)
Query: 13 GEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
++ + D+ + + N+L K W+ N W+P +VP+ +D+ W +
Sbjct: 3 PTGKLKLIDR---VSAINWNRLDDEKDLEVWD---RLVGNFWVPEKVPVSNDIQSWAT-- 54
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L++ E+ M R +++ +++ P AF E+VH+ ++
Sbjct: 55 -LSEAEKNMTTRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYS 113
Query: 133 YIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
I ++L + E F P++ KA L+Y +
Sbjct: 114 SIFSTLISTKEIDEAFAWSEANPNLQRKAEIVLEYYRGDD---------------PLKRK 158
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENP 250
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 159 VASTMLESFLFYSGFYAPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLALES 218
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
E + + +L E E+ Y G +GL ++++++ AN+ +G E
Sbjct: 219 QERQDEIKAYTFELLFELYENEVEYTEALY--GELGLT-EDVKKFLRYNANKALMNLGYE 275
Query: 311 PLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
LF E NP + + + +FF + Y G + WD
Sbjct: 276 ALFPKEETDVNPAILAALSPNADENHDFFSGSGSSYVIGKAVDTTDDDWD 325
>gi|310830452|ref|YP_003965553.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
polymyxa SC2]
gi|309249919|gb|ADO59485.1| Ribonucleoside-diphosphate reductase, beta subunit [Paenibacillus
polymyxa SC2]
Length = 342
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 75/341 (21%), Positives = 146/341 (42%), Gaps = 19/341 (5%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
N ++ + S + ++ ++ Y NHW+P+E+PM D + + L +
Sbjct: 13 NKSNRIIEGESSGILNWDDIRLPQMYKLYRVLIGNHWIPSEIPMNVDKSDF---PMLPTN 69
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
+ KR +G A +S+ V + +L++ +E +H+ ++ Y+++S
Sbjct: 70 TQNTFKRIIGLLAVLDSMQT-MFVGDVREYLTDSSLEAVAAIIGQQEVIHNQSYSYVLSS 128
Query: 138 LGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
L + E+F ++ P + + + Q + + F + L V+
Sbjct: 129 LVSYTEQLEIFEYWKNDPILLKRNLFIRDAYQAFRES-------PSPETFFKALVADMVL 181
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++FY FA +L R KM+ ++ YI RDE+ H F ++ Q+ I+ P L T+
Sbjct: 182 -EGIFFYAAFAFFYNLARDQKMLATSQMISYIQRDENQHCYFFAELYKQLLIDFPQLNTE 240
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+ + + EA E +A + G G++ Y++ IAN R +GL ++
Sbjct: 241 QNKTFVYNFMDEAVRHETEWAEYVL-DGIEGIDLDEFRGYIRHIANNRLRLMGLPAAYEG 299
Query: 316 TENPFPW---MSEVIDLKKEKNFFETRVTEYQQGAEL-KWD 352
N PW S+ + FE + Y + ++ WD
Sbjct: 300 VSNTMPWIRPFSDEALNDTLTDQFEAKPRTYTKASQDNDWD 340
>gi|268591162|ref|ZP_06125383.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
rettgeri DSM 1131]
gi|291313388|gb|EFE53841.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
rettgeri DSM 1131]
Length = 378
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 72/336 (21%), Positives = 133/336 (39%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M + +V + KY + + W P EV + D + N
Sbjct: 10 QKKNDQMLEPMFFGQPVNVARYDQQKYPIFEKLIEKQLSFFWRPEEVDVSRDRIDY---N 66
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 67 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 126
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
+II ++ D +F+ E I +A + L +
Sbjct: 127 HIIRNIVNDPAIIFDDIVENEEILKRAKDISGFYDDLIEMTNYYHMFGEGTHTCNGKQVT 186
Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 187 VSLRQLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 246
Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + E +Q+ + +A E +A +G +GLN
Sbjct: 247 GTQHMLNLLRSGQDDPEMAEIAAECEQECYDLFVQAAEQEKEWADYLFSEGSMIGLNKDI 306
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 307 LCQYVEYITNIRMQAVGLKLPFETRSNPIPWINAWL 342
>gi|156933156|ref|YP_001437072.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
sakazakii ATCC BAA-894]
gi|156531410|gb|ABU76236.1| hypothetical protein ESA_00966 [Cronobacter sakazakii ATCC BAA-894]
Length = 376
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 71/328 (21%), Positives = 128/328 (39%), Gaps = 25/328 (7%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M + +V + KY + + W P EV + D ++ L + E+
Sbjct: 16 EPMFFGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ---ALPEHEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II ++
Sbjct: 73 IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVN 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTTGTKDADQE 184
D +F+ I +A Y L + T ++
Sbjct: 133 DPAVVFDDIVTNEQILKRAEGISHYYDDLIEMTSYWHLLGEGTHSVNGKTVTVNLHELKK 192
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
L + E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 193 KLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNL 252
Query: 245 IKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
++ +E +Q+ + A E +A G +GLN QY+++I
Sbjct: 253 MRSGEDDPEMAAIAEECKQECYDLFVLAAQQEKEWAEYLFQGGSMIGLNKDILCQYVEYI 312
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVI 327
N R +GL+ FK NP PW++ +
Sbjct: 313 TNIRMQAVGLDLPFKTRSNPIPWINTWL 340
>gi|52425023|ref|YP_088160.1| ribonucleotide-diphosphate reductase subunit beta [Mannheimia
succiniciproducens MBEL55E]
gi|52307075|gb|AAU37575.1| NrdF protein [Mannheimia succiniciproducens MBEL55E]
Length = 376
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 69/336 (20%), Positives = 129/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V++ KY + + W P EV + D +
Sbjct: 8 QNKNDQLKEPMFFGQNVNVSRYDQQKYETFEKLIEKQLSFFWRPEEVDVAQDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP----------SFTTGTKDAD 182
+II ++ D +F+ I +A Y L ++ K+
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYNLFGEGTYKVEGKECK 184
Query: 183 QEFL------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VTLRNLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +E +Q++ + A E A+A G +GLN
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFLAAAEQEKAWADYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQARSNPIPWINAWL 340
>gi|167856024|ref|ZP_02478769.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
parasuis 29755]
gi|219871494|ref|YP_002475869.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
parasuis SH0165]
gi|167852863|gb|EDS24132.1| ribonucleotide-diphosphate reductase subunit alpha [Haemophilus
parasuis 29755]
gi|219691698|gb|ACL32921.1| ribonucleotide-diphosphate reductase beta subunit [Haemophilus
parasuis SH0165]
Length = 325
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 64/320 (20%), Positives = 129/320 (40%), Gaps = 19/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
Q+ P +Y E + +++W+ TE D+ +++ + D ER ++ R + +
Sbjct: 9 RIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRT--NINDHERHVLTRAMLAIS 66
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +Y + PE A E H + +++ LGL++ +F
Sbjct: 67 QVEVNV-KRFWGELYHYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLND--MFTQIT 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E+ + + + + + +F+ L +F + E + + F ++S
Sbjct: 124 EIEPLMKRIRYMEDFMRE---------KDTGKGQFVLSLVLFSLFVEHISLFGQFIIMMS 174
Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N GI+ + ++E +H FGI + + E+ L+T EF ++ +T+ +A
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGRFGIALYEILSDEHSELFTPEFFEELKTLSQQAF 234
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
E +G + ++ + E Y+ N +GLEP + W
Sbjct: 235 EAERGILDWIFEEGDLSFISRKTVENYIMNRYNNSLSILGLEPPYDVDPELLKETEWFDI 294
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
I KE +FF R T+Y +
Sbjct: 295 EIISTKETDFFNKRSTDYSK 314
>gi|260598671|ref|YP_003211242.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
turicensis z3032]
gi|260217848|emb|CBA32365.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Cronobacter
turicensis z3032]
Length = 376
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 72/336 (21%), Positives = 131/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNNQLLEPMFFGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y L + T
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQILKRAEGISHYYDDLIEMTSYWHLLGEGTHSVNGKTVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLHELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ +E +Q+ + A E +A G +GLN
Sbjct: 245 GTQHMLNLMRSGEDDPEMAIIAEECKQECYDLFVLAAQQEKEWAEYLFQGGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ FK NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLDLPFKTRSNPIPWINTWL 340
>gi|242238482|ref|YP_002986663.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya dadantii
Ech703]
gi|242130539|gb|ACS84841.1| ribonucleotide reductase [Dickeya dadantii Ech703]
Length = 376
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 70/336 (20%), Positives = 131/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLQEPMFFGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS------------FTTGTKD 180
+II ++ D +F+ I +A + L + T D
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEEILKRARDISGFYDELIELTSYYHLLGEGTHQVNGKTVD 184
Query: 181 ADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ L+ + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 INVYQLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ +E QQ+ + A E +A G +GLN
Sbjct: 245 GTQHMLNLMRSGQDDPEMAKVAEECQQQCYDLFVMAAQQEKEWAEYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFETRTNPIPWINAWL 340
>gi|294140834|ref|YP_003556812.1| ribonucleoside-diphosphate reductase subunit beta [Shewanella
violacea DSS12]
gi|293327303|dbj|BAJ02034.1| ribonucleoside-diphosphate reductase, beta subunit [Shewanella
violacea DSS12]
Length = 376
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 82/346 (23%), Positives = 134/346 (38%), Gaps = 37/346 (10%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQ 62
NN L P+ G+ VNV AR DV KY + + W P EV +
Sbjct: 11 NNARLEPMFMGQS-VNV-------ARYDVQ-----KYEVFEKLIEKQLSFFWRPEEVDVS 57
Query: 63 DDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
D + L D E+ + NL + +S+ + +A +S PE ++ +F
Sbjct: 58 KDKIDY---AALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSF 114
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-------------- 168
E +HS ++ +II ++ D +F+ E I +A QY
Sbjct: 115 SETIHSRSYTHIIRNIVNDPSIIFDDIVENEEILKRATDIAQYYDDLILLTQAFHLHGEG 174
Query: 169 --LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
+ + T+ ++ L V V E + FY FA + N M G A+ +
Sbjct: 175 THIINGKELLVTQRTIKKSLYLCMVSVNVLEAIRFYVSFACSFAFAERNVMEGNAKIIRL 234
Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS----RTMLHEATLLEIAYAHETMPK 282
I RDE+LHLN ++ ++ E ++ + +A E +A
Sbjct: 235 IARDEALHLNSTQHILKIMRAGADDPEMGEIAKECEQLAYDIFVKAAEQEKEWAQYLFKD 294
Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
G +GLN QY+++I N R + L + NP PWM +
Sbjct: 295 GSMIGLNQAILCQYVEYITNERMKSVNLPCHYDEITNPLPWMKNWL 340
>gi|262274472|ref|ZP_06052283.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
[Grimontia hollisae CIP 101886]
gi|262221035|gb|EEY72349.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
[Grimontia hollisae CIP 101886]
Length = 360
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 69/316 (21%), Positives = 124/316 (39%), Gaps = 25/316 (7%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
KY + + W P EV + +D + N L + E+ + NL + +S+
Sbjct: 16 KYEIFEKLIEKQLSFFWRPEEVDVSNDRIDY---NKLPEHEKHIFISNLKYQTLLDSIQG 72
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+ +A+ +S PE ++ +F E +HS ++ +II ++ + +F+ I
Sbjct: 73 RSPNVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVTNPSLVFDDIVVNEHIIK 132
Query: 158 KANWALQYTQTL---SSPSFTTGTKDADQEFL-------------QDLFVFYVVFEGMWF 201
+AN Y L +S G + + E + F
Sbjct: 133 RANDIAGYYDDLIQATSDYHRLGEGEHTVNGQTVVVSLRELKKKLYICLMSVNALEAIRF 192
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEF 257
Y FA + M G A+ + I RDE+LHL ++N ++ + KE
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLNILRSGDDDPEMAEIAKEC 252
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KY 315
+Q + A E +A G +GLN QY+++I N R +GL+P +
Sbjct: 253 EQVCFDLFKNAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNLRMAAVGLKPAYQGA 312
Query: 316 TENPFPWMSEVIDLKK 331
+NP PW++ +
Sbjct: 313 NQNPIPWINAWLSSDN 328
>gi|227328222|ref|ZP_03832246.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 376
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 73/336 (21%), Positives = 133/336 (39%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y +L + T
Sbjct: 125 HIIRNIVNDPSLVFDDIVTNDEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKTVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ + +E QQ+ + A E +A G +GLN
Sbjct: 245 GTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWL 340
>gi|91793308|ref|YP_562959.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
denitrificans OS217]
gi|91715310|gb|ABE55236.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Shewanella denitrificans OS217]
Length = 376
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 130/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + M +S +V + KY + + W P EV + D +
Sbjct: 8 QTPNDATKEPMFFGQSVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDKIDF---T 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
+II ++ D +F+ I +A +Y L + A +
Sbjct: 125 HIIRNIVNDPSVIFDDIVVNDEILKRAGDIAKYYDDLIHLTQIFNLHGAGTHLIEGKQVT 184
Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 185 VNLRVLKKSLYLCMMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLN 244
Query: 237 FGIDVI--NQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++ Q ++P + E QQ++ + ++A E +A G +GLN
Sbjct: 245 STQHILALMQGGKDDPEMAEIAIECQQQAYDLFYKAAEQEKEWAKYLFKDGSMIGLNEQI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N+R + L + NP PWM +
Sbjct: 305 LCQYVEYITNQRMKSVHLPQPYAEISNPLPWMKNWL 340
>gi|227114436|ref|ZP_03828092.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 376
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 73/336 (21%), Positives = 133/336 (39%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y +L + T
Sbjct: 125 HIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKTVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ + +E QQ+ + A E +A G +GLN
Sbjct: 245 GTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWL 340
>gi|261822457|ref|YP_003260563.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
wasabiae WPP163]
gi|261606470|gb|ACX88956.1| ribonucleotide reductase [Pectobacterium wasabiae WPP163]
Length = 376
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 73/336 (21%), Positives = 133/336 (39%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y +L + T
Sbjct: 125 HIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKTVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLHTLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ + +E QQ+ + A E +A G +GLN
Sbjct: 245 GTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWL 340
>gi|59711808|ref|YP_204584.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio fischeri
ES114]
gi|197336251|ref|YP_002156001.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio fischeri
MJ11]
gi|59479909|gb|AAW85696.1| ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like
protein [Vibrio fischeri ES114]
gi|197317741|gb|ACH67188.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio fischeri
MJ11]
Length = 377
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 73/341 (21%), Positives = 138/341 (40%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+++ + + M S +V + K+ + + W P EV + D + N
Sbjct: 8 QEKNDQLKEPMFLGNSVNVARYDQQKFQIFEKLIEKQLSFFWRPEEVDVSGDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 NLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------T 176
+II ++ + +F+ E I +A Y L + T
Sbjct: 125 HIIRNIVNNPSVIFDDIVENEEILKRAKDIAHYYDNLIQATNDYHRFGEGTHVLNGQEIT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+K ++ L + E + FY FA + M G A+ + I RDESLHL
Sbjct: 185 ISKRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDESLHLT 244
Query: 237 FGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P E +Q+ + A E +A+ G +GLN
Sbjct: 245 STQHMLNLLRTGQDDPEFVEIAAECEQECFDLFKAAAEQEKQWANYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL ++ T+NP PW++ +
Sbjct: 305 LCQYVEYITNLRMKAVGLNSAYEGATQNPIPWINSWLSSDN 345
>gi|28393533|gb|AAO42187.1| putative ribonucleoside-diphosphate reductase small chain
[Arabidopsis thaliana]
Length = 243
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 23/206 (11%)
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + + +T KA WA+++ S + V + EG++F
Sbjct: 41 IFFVQSKPFLVTKKAEWAMKWINGSQS--------------FAERIVAFACVEGIFFSGS 86
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F I L + M G+ + I RDE LH +F + + ++ + + + + +
Sbjct: 87 FCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLRTKFD-------EDRLKAI 139
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
+ +A +E + + + VG+N QY++F+A+R +G ++ T NPF WM
Sbjct: 140 VCDAVEIEREFVCDALSCALVGMNRELMSQYIEFVADRLLAALGCGKVYGVT-NPFDWM- 197
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
E+I L+ + NFFE RV EYQ+ + +
Sbjct: 198 ELISLQGKTNFFEKRVGEYQKASVMS 223
>gi|269102947|ref|ZP_06155644.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
[Photobacterium damselae subsp. damselae CIP 102761]
gi|268162845|gb|EEZ41341.1| ribonucleotide reductase of class Ia (aerobic) beta subunit
[Photobacterium damselae subsp. damselae CIP 102761]
Length = 377
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 73/334 (21%), Positives = 132/334 (39%), Gaps = 26/334 (7%)
Query: 21 DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ M + +V + K+ + + W P EV + D + N L D E+
Sbjct: 15 KEPMFFGQPVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSGDRIDY---NNLPDHEK 71
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
+ NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II ++
Sbjct: 72 HIFISNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYTHIIRNIV 131
Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEFL------ 186
D +F+ I +A +Y L S + T T D +
Sbjct: 132 NDPAIVFDDIVSNEYIIKRAGDISRYYDELISATNDYHRLGEGTHTVDGKTITINLRDLK 191
Query: 187 ---QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 192 KKLYLCIMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILN 251
Query: 244 QIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
++ + KE + + + A E +A G +GLN QY+++
Sbjct: 252 LLRNGHDDPEMAEIAKESEAECFDIFKRAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEY 311
Query: 299 IANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK 331
I N R + +GLE + T+NP PW++ +
Sbjct: 312 ITNLRMNAVGLEHAYTGATQNPIPWINSWLSSDN 345
>gi|227547058|ref|ZP_03977107.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
longum subsp. infantis ATCC 55813]
gi|227212475|gb|EEI80364.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
longum subsp. infantis ATCC 55813]
Length = 330
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 65/351 (18%), Positives = 130/351 (37%), Gaps = 32/351 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+
Sbjct: 1 MAPISIPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W+ +T+DE + +++ +++ P AF E+V
Sbjct: 55 SWQ---KMTEDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111
Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ I ++L E F+ + KA L Y + +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ + Q + +L+E E+ Y + VGL E+++++ N+
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VGLT-DDVEKFLRYNGNKAL 273
Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+G LF NP + + + +FF + Y G + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324
>gi|312967536|ref|ZP_07781751.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
coli 2362-75]
gi|312287733|gb|EFR15638.1| ribonucleoside-diphosphate reductase 1 subunit beta [Escherichia
coli 2362-75]
Length = 359
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 69/312 (22%), Positives = 128/312 (41%), Gaps = 26/312 (8%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
KY + + W P EV + D ++ L + E+ + NL + +S+
Sbjct: 16 KYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 72
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+ +A+ +S PE ++ AF E +HS ++ +II ++ D +F+ I
Sbjct: 73 RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQK 132
Query: 158 KANWALQYTQTLSS-----------------PSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+A Y L + T ++ ++ L + E +
Sbjct: 133 RAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNAL-EAIR 191
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKE 256
FY FA + M G A+ + I RDE+LHL ++N + ++P + +E
Sbjct: 192 FYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEE 251
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+Q+ + +A E +A G +GLN QY+++I N R +GL+ F+
Sbjct: 252 CKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQT 311
Query: 316 TENPFPWMSEVI 327
NP PW++ +
Sbjct: 312 RSNPIPWINTWL 323
>gi|261494146|ref|ZP_05990649.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
haemolytica serotype A2 str. BOVINE]
gi|261310312|gb|EEY11512.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
haemolytica serotype A2 str. BOVINE]
Length = 325
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 66/320 (20%), Positives = 130/320 (40%), Gaps = 19/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
+ P +Y E + +++W+ TE D+ +++ + D ER ++ R + +
Sbjct: 9 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--INDHERHVLTRAMLAIS 66
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +YR+ PE A E H + +++ LGL+ E+F+
Sbjct: 67 QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIH 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E+ + + + + + EF+ L +F + E + + F ++S
Sbjct: 124 EIEPLMNRIRYMESFMKD---------KDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMS 174
Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N GI+ + ++E +H FGI + ++ E+ L+T EF + +T+ ++A
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAF 234
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
E +G + + + E Y++ N +GLEP W
Sbjct: 235 EAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLEPPHDIDPELLKETEWFDI 294
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
I KE +FF R T+Y +
Sbjct: 295 EILSTKETDFFNKRSTDYSK 314
>gi|34419511|ref|NP_899524.1| aerobic ribonucleoside diphosphate reductase small subunit [Vibrio
phage KVP40]
gi|34333192|gb|AAQ64347.1| aerobic ribonucleoside diphosphate reductase small subunit [Vibrio
phage KVP40]
Length = 374
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 61/342 (17%), Positives = 128/342 (37%), Gaps = 22/342 (6%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
I K ++ L ++++ +K+G + + W P EV + D
Sbjct: 3 KTIFNKNKVDHLGQPLFLGEDPNISRFETVKHGVFEQLTEKQLSFFWRPEEVDLTLDSQE 62
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
+ + + + + + +NL + + +S+ +A S+ ++ F E +H
Sbjct: 63 F---DRMPEHWKHVFTQNLKYQSLLDSVQGRAPNIAFLPICSDNSLENWITTWDFSETIH 119
Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
S ++ +I+ +L + +F+ SI A+A ++ L + +
Sbjct: 120 SRSYTHIMRNLYSNPSAVFDEIVLDKSIMARAEAVTEHYDKLIAETQKLNQLKTMNLDEA 179
Query: 188 D--------------LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
E + FY FA + M G A+ + I RDE L
Sbjct: 180 HILMQESAVKEALYLCMHAVNALEAIRFYVSFACTFNFAEQGIMEGNAKVMKLIARDEQL 239
Query: 234 HLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
HL +I+ + E Q ++ + + E +AH +G GLN
Sbjct: 240 HLKGTQALISIWQNYKDDPEMAEISLRLQPEAEKIFMQVVDQEKEWAHSLFSQGTVPGLN 299
Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
A +Y++++A+ R +GL + ++P PW+ + ++
Sbjct: 300 AQILCEYVEYLADSRMRSVGLNSPYPRRKHPLPWIRKWLNSD 341
>gi|253687496|ref|YP_003016686.1| ribonucleotide reductase [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251754074|gb|ACT12150.1| ribonucleotide reductase [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 376
Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 73/336 (21%), Positives = 134/336 (39%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y +L + T
Sbjct: 125 HIIRNIVNDPSLVFDDIVTNEEILKRAKDISGYYDSLIEMTGYYHLLGEGTHQVNGKSVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VDLHSLKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ + +E QQ+ + A E +A G +GLN
Sbjct: 245 GTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFQTRTNPIPWINAWL 340
>gi|190150315|ref|YP_001968840.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303253584|ref|ZP_07339722.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307245900|ref|ZP_07527985.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307247988|ref|ZP_07530018.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307254872|ref|ZP_07536697.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307259315|ref|ZP_07541044.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307263658|ref|ZP_07545269.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189915446|gb|ACE61698.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302647504|gb|EFL77722.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306853260|gb|EFM85480.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306855503|gb|EFM87676.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306862169|gb|EFM94138.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306866682|gb|EFM98541.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306871035|gb|EFN02768.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 376
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 132/337 (39%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D ++S
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A +S PE ++ F E +HS ++
Sbjct: 66 -LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ I +A Y L S +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQYQ 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L V+ E + FY FA + M G A+ ++I RDE LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNVL-EAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+++N I +E +Q++ + A E +A G +GLN
Sbjct: 244 TGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNED 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+Y+++I N R +GL F + NP PW++ +
Sbjct: 304 ILVKYVEYITNIRMQAVGLPRPFAASSNPIPWINAWL 340
>gi|294788520|ref|ZP_06753762.1| ribonucleoside-diphosphate reductase, beta subunit [Simonsiella
muelleri ATCC 29453]
gi|294483397|gb|EFG31082.1| ribonucleoside-diphosphate reductase, beta subunit [Simonsiella
muelleri ATCC 29453]
Length = 384
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 70/334 (20%), Positives = 130/334 (38%), Gaps = 28/334 (8%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M + +V + KY + + W P EV + D + L + E+
Sbjct: 23 EPMFFGQPVNVARYDQQKYEVFEKLIEKQISFFWRPEEVDLSRDRMDY---AKLPEHEKH 79
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II ++
Sbjct: 80 IFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWAFFETIHSRSYTHIIRNIVN 139
Query: 141 DEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFTTGTKDADQ 183
D +F+ + I A+A Y +++ T ++ +
Sbjct: 140 DPSVVFDDIVQNEYIIARAEDIACYYNDLIEYTQYFNLLGEGKHLINNKEITISLRELKK 199
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ L V+ E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 200 KLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTSTQHMLN 258
Query: 244 QIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
++ E + + +A E +A G +GLN QY+++
Sbjct: 259 LMRNGTDDPEMAEIAAELHDECVALFKKAAAQEKEWAAYLFKDGSMIGLNKDILGQYVEY 318
Query: 299 IANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
I N R +GL F +NP PW++ +
Sbjct: 319 ITNLRMSAVGLPQAFPKALQNPIPWINAWLSSDN 352
>gi|254672337|emb|CBA05511.1| ribonucleoside-diphosphate reductase beta chain [Neisseria
meningitidis alpha275]
Length = 345
Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 72/336 (21%), Positives = 133/336 (39%), Gaps = 28/336 (8%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 14 PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 70
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 71 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 130
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ E ITA+A Y L +
Sbjct: 131 THIIRNIVNDPSVVFDDIVENEYITARAEDIACYYDDLIEYTQYYNLLGEGVHNVGGKPI 190
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T + ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 191 TVSLRGLKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 249
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ E Q + + +A E +A G +GLN
Sbjct: 250 LTGTQHMLNLMRSGVDDSEMAEIAAELQDECFQLFKKAAEQEKEWAAYLFKDGSMIGLNK 309
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMS 324
QY+++I N R +GL F+ +NP PW++
Sbjct: 310 EILSQYVEYITNLRMQAVGLPAGFEGANQNPIPWIN 345
>gi|251790602|ref|YP_003005323.1| ribonucleotide-diphosphate reductase subunit beta [Dickeya zeae
Ech1591]
gi|247539223|gb|ACT07844.1| ribonucleotide reductase [Dickeya zeae Ech1591]
Length = 376
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 131/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLLEPMFFGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
GL + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 GLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A + L + T
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEEILKRAKDISGFYDELIELTSYYHLLGEGTHQVNGKTVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 INLYELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ +E QQ+ + A E +A G +GLN
Sbjct: 245 GTQHMLNLMRAGQDDPEMAQVAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFETRTNPIPWINAWL 340
>gi|126208467|ref|YP_001053692.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
pleuropneumoniae L20]
gi|165976419|ref|YP_001652012.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|303251074|ref|ZP_07337260.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307250239|ref|ZP_07532194.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307252630|ref|ZP_07534523.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307261475|ref|ZP_07543145.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|126097259|gb|ABN74087.1| ribonucleoside-diphosphate reductase subunit beta [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165876520|gb|ABY69568.1| ribonucleoside-diphosphate reductase, beta chain [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|302650084|gb|EFL80254.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306857725|gb|EFM89826.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306859875|gb|EFM91895.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306868827|gb|EFN00634.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 376
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 132/337 (39%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D ++S
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A +S PE ++ F E +HS ++
Sbjct: 66 -LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ I +A Y L S +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQYQ 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L V+ E + FY FA + M G A+ ++I RDE LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNVL-EAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+++N I +E +Q++ + A E +A G +GLN
Sbjct: 244 TGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNED 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+Y+++I N R +GL F + NP PW++ +
Sbjct: 304 ILVKYVEYITNIRMQAVGLPRPFAASSNPIPWINAWL 340
>gi|296393703|ref|YP_003658587.1| ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM
44985]
gi|296180850|gb|ADG97756.1| Ribonucleoside-diphosphate reductase [Segniliparus rotundus DSM
44985]
Length = 334
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 64/333 (19%), Positives = 128/333 (38%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P +VP+ +D+ W + L +DE+ + R
Sbjct: 25 NWNRVADEKDAEVWD---RLVGNFWLPEKVPLSNDIQSWHT---LNEDEQRLTMRVFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ + +++ P AF E+VH+ ++ I ++L E F
Sbjct: 79 TLLDTIQGSVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLTGTPEIDEAFR 138
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA L+ + V + E FY+GF
Sbjct: 139 WSEENPALQKKAAIVLERYRGDD---------------PLKRKVASTLLESFLFYSGFYL 183
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + ++L +
Sbjct: 184 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLQMSTPERREELKDFTFSLLFD 243
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 244 LYENEVEYTQDLY--DPVGLT-EDVKKFLRYNANKALMNLGYEGLFPKDETAVNPAILSA 300
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 333
>gi|271499642|ref|YP_003332667.1| ribonucleotide reductase [Dickeya dadantii Ech586]
gi|270343197|gb|ACZ75962.1| ribonucleotide reductase [Dickeya dadantii Ech586]
Length = 376
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 65/336 (19%), Positives = 129/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLLEPMFFGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDLFV 191
+II ++ D +F+ I +A + L + + + +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEILKRAKDISGFYDELIELTSYYHLLGEGTHQINSKTVT 184
Query: 192 FYVV---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLYELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ + ++ + ++ A E +A G +GLN
Sbjct: 245 GTQHMLNLMRAGQDDPEMAQIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFETRTNPIPWINAWL 340
>gi|152979144|ref|YP_001344773.1| ribonucleotide-diphosphate reductase subunit beta [Actinobacillus
succinogenes 130Z]
gi|150840867|gb|ABR74838.1| Ribonucleoside-diphosphate reductase [Actinobacillus succinogenes
130Z]
Length = 376
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 72/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D +
Sbjct: 8 QNKNDQLLEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG--------------- 177
+II ++ D +F+ I +A Y L S
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDDLIRDSQLYSLYGEGTYQVDGKECA 184
Query: 178 -TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
T ++ L + E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VTLRNLKKRLYLCLMSVNALEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +E +Q++ + A E A+A G +GLN
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFEARSNPIPWINAWL 340
>gi|237732274|ref|ZP_04562755.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
30_2]
gi|226907813|gb|EEH93731.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
30_2]
Length = 376
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/329 (21%), Positives = 135/329 (41%), Gaps = 27/329 (8%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M + +V + KY + + W P EV + D ++ L + E+
Sbjct: 16 EPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDFQ---ALPEHEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II ++
Sbjct: 73 IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVN 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFTTGTKDADQ 183
D +F+ I +A Y L + ++ +
Sbjct: 133 DPAVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVVVNLRELKK 192
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ L + E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 193 KLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 251
Query: 244 --QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
+ +++P + +E +Q+ + +A L E +A G +GLN QY+++
Sbjct: 252 LLRSGVDDPEMAEIAEECKQECYDLFVQAALQEKEWADYLFRDGSMIGLNKDILCQYVEY 311
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVI 327
I N R +GL+ F+ NP PW++ +
Sbjct: 312 ITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|260768282|ref|ZP_05877216.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
furnissii CIP 102972]
gi|260616312|gb|EEX41497.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
furnissii CIP 102972]
gi|315179989|gb|ADT86903.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio furnissii
NCTC 11218]
Length = 377
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/341 (20%), Positives = 133/341 (39%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ N + M + +V + KY + + W P EV + D +
Sbjct: 8 QKKNNQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------T 176
+II ++ D +F+ E I +A + L +
Sbjct: 125 HIIRNIVNDPAIVFDDIVENEHIIKRAKDIAHFYDDLIQMTNDYHRFGEGTHELNGETVH 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLKGLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ +E +Q+ + +A E +A G +GLN
Sbjct: 245 GTQHMINLLRNGMDDFEFLQIAEECKQECFDLFKQAAEQEKEWAEYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
QY+++I N R +GL+ + T NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLDAAYPSATTNPIPWINAWLSSDN 345
>gi|90409249|ref|ZP_01217354.1| ribonucleotide-diphosphate reductase beta subunit [Psychromonas sp.
CNPT3]
gi|90309647|gb|EAS37827.1| ribonucleotide-diphosphate reductase beta subunit [Psychromonas sp.
CNPT3]
Length = 381
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/341 (20%), Positives = 124/341 (36%), Gaps = 30/341 (8%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ + M +V + K+ + + W P E+ + D + L
Sbjct: 12 DALKEPMFFGNPVNVARYDQQKFEVFEKLIEKQLSFFWRPEEIDVSRDRIDF---MNLPS 68
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +I+
Sbjct: 69 HEQHIFISNLKYQTLLDSIQGRSPNMALLPIVSLPELETWIETWSFSETIHSRSYTHILR 128
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLS---------------------SPSFT 175
+L D E+F I +A+ QY L +
Sbjct: 129 NLFTDPSEVFEDIVTNVEIQKRASDIAQYYDALIHAVQFMQLHGLEQSKIEYLDLDGNPE 188
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
T ++ L E + FY FA + + + G A+ + I RDE+LHL
Sbjct: 189 KLTLRVIKKKLYLCMCSINALEAIRFYVSFACSFAFAERDLLEGNAKIIKLIARDEALHL 248
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAHETMPKG-FVGLNAP 290
N ++N E + + A E +A G +GLN
Sbjct: 249 NSTQQILNIWADGKDDPEMAEIAIECHAKGRDIFLTAAAQEKEWAAYLFKDGSMIGLNEV 308
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
QY+++I+N R IG E F+ NP PW++ +
Sbjct: 309 ILCQYVEYISNVRMQAIGYEAPFEIKNNPIPWINHWLISDN 349
>gi|283832326|ref|ZP_06352067.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
youngae ATCC 29220]
gi|291071973|gb|EFE10082.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
youngae ATCC 29220]
Length = 376
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/329 (21%), Positives = 135/329 (41%), Gaps = 27/329 (8%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M + +V + KY + + W P EV + D ++ L + E+
Sbjct: 16 EPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II ++
Sbjct: 73 IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVN 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFTTGTKDADQ 183
D +F+ I +A Y L + ++ +
Sbjct: 133 DPAVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVVVNLRELKK 192
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ L + E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 193 KLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 251
Query: 244 --QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQF 298
+ +++P + +E +Q+ + +A L E +A G +GLN QY+++
Sbjct: 252 LLRSGVDDPEMAEIAEECKQECYDLFVQAALQEKEWADYLFRDGSMIGLNKDILCQYVEY 311
Query: 299 IANRRCHQIGLEPLFKYTENPFPWMSEVI 327
I N R +GL+ F+ NP PW++ +
Sbjct: 312 ITNIRMQAVGLDLPFQTRSNPIPWINTWL 340
>gi|27904669|ref|NP_777795.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
gi|38605263|sp|Q89AS5|RIR2_BUCBP RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|27904066|gb|AAO26900.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
Length = 376
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 76/354 (21%), Positives = 138/354 (38%), Gaps = 28/354 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M +S ++++ KY + + W P EV + D ++
Sbjct: 8 KNKNNQLYEPMFFGQSVNISRYDQQKYEIFEKLIEKQLSFFWRPEEVDLSRDYIDFQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 NLPQHEKHIFVSNLKYQTLLDSIQGRSPNIALLPIVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ +F+ + +I +A +Y L +
Sbjct: 125 HIIRNIINTPSLIFDDIIDNKNIANRAKDIAKYYDDLIELTSYWHLFGEGKHTINGKKIK 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+ ++ L + E + FY FA + KM G A+ + I RDE+LHL
Sbjct: 185 IDLHELKKKLYLCLISVNAL-EAIRFYVSFACSFAFAEREKMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDV----INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+ N E +KE ++ + + E +A G +GLN
Sbjct: 244 TSTQHILNILHNDKNNEGMSDISKECYEECYHLFIRVSDQEKIWAKYLFQNGSMLGLNQE 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWM-SEVIDLKKEKNFFETRVTEY 343
QY+++I N R IGL FK NP PW+ S +I + E V+ Y
Sbjct: 304 ILSQYIEYITNIRMKAIGLPSPFKILSNPIPWINSWLISDNVQVAPQEISVSSY 357
>gi|221316490|ref|ZP_03598295.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. NCIB 3610]
Length = 347
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 73/336 (21%), Positives = 130/336 (38%), Gaps = 15/336 (4%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+RM + S + + +E W+P EV M D W + + + E+ +
Sbjct: 20 ERMFDDVSGILFWDDIINQVYYELIKEMREVFWIPDEVSMSKDKVQWAT--EMNEMEQEL 77
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
+G A +S+ +A Y ++ + + + A E +H+ ++ YI++S+
Sbjct: 78 FLNAIGILAVLDSIATYFDNVAAY-YIRDSAIKALMAFVAAMETIHNESYTYILSSVSSK 136
Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
+ +V K + ++ L F ++ E V EG+ F
Sbjct: 137 -----AVSLDVFERPKKNEFMIR-RNKLMMDLFDEFIQNPTPETFAKGLVAMSGLEGLCF 190
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
GF R KM G QYI RDE H F ++ I + P L T+EF +
Sbjct: 191 VNGFTPFYHFNRNGKMFGTGTVIQYIQRDEMKHSYFQTILVRDILTQYPELNTEEFSEFV 250
Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
E LE + + K ++ ++Y+ + AN +GL+ +F +NP P
Sbjct: 251 YDFFTELVQLEREFCEDLY-KNTPDIDIEEVKEYIGYRANLILDNLGLDQIFSAKKNPMP 309
Query: 322 W---MSEVIDLKKEKNFFETRVTEYQQGAEL--KWD 352
W +++FFE + Y + E WD
Sbjct: 310 WITAFDPDNLNNTKRDFFEDKEVNYGKANEQKNDWD 345
>gi|117530173|ref|YP_851016.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis
phage Ma-LMM01]
gi|86990305|dbj|BAE79256.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis
phage Ma-LMM01]
gi|117165785|dbj|BAF36093.1| ribonucleoside-diphosphate reductase beta subunit [Microcystis
phage Ma-LMM01]
gi|124270949|dbj|BAF45776.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage
Ma-LMM02]
gi|124270951|dbj|BAF45777.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage
Ma-LMM03]
gi|124270953|dbj|BAF45778.1| ribonucleoside-diphosphate reductase beta subunit [Cyanophage
Ma-HPM05]
Length = 348
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 78/359 (21%), Positives = 143/359 (39%), Gaps = 30/359 (8%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
L PI + +R+ ++ L +KY WA + N W+P + D+
Sbjct: 5 LPPIFNPSGDDSPQKRRLFGGNPTNIINLKDVKYKWASHLFTEMRANIWIPQATDLTPDI 64
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ + + + R L + +SL + L + ++ PE + Q +E
Sbjct: 65 NNYVT---MPPNMRRAFDGMLSYLTFLDSLQTRVLPL-LMPVITAPEVSICMGEQLSQEQ 120
Query: 126 VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
VHS ++ YII ++ + ++ ++RE P + + + +
Sbjct: 121 VHSQSYAYIIETVIPTDKRDYIYELWREDPVLLKRCEYIQNLYDRYIH--------EMTM 172
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
E V + EG++F+ GF ++ M A+ + I RDE HL ++I
Sbjct: 173 ENYTISMVSDFLLEGIYFFPGFRLFYAIANERYMSATADIIKLIERDEQTHLKLISNIIR 232
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
E +W + + +A EI + + G G+NA + EQY +++ N R
Sbjct: 233 TGLAEGTLMWDT---DEIIDLFRKAAEYEIEWGLH-IGLGVNGINATTIEQYAKYLCNIR 288
Query: 304 CHQIGLEPLFK---YTENPFPWMSEVIDLKKE-----KNFFETRVTEYQQGAEL--KWD 352
IGL +F+ Y+ NP+ + E NFFE+ V Y+ A++ WD
Sbjct: 289 ARAIGLPTVFEGRQYSRNPYAHLERFAATTGEDSITRDNFFESGVI-YRNPAKVVDGWD 346
>gi|90581239|ref|ZP_01237037.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum
S14]
gi|90437610|gb|EAS62803.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio angustum
S14]
Length = 377
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 75/342 (21%), Positives = 138/342 (40%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ R + + M +S +V + K+ + + W P EV + D + N
Sbjct: 8 QTRNDQLKEPMFFGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSGDRINY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 NLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ + +F+ E I +A +Y L S + FT
Sbjct: 125 HIIRNIVNNPSVVFDDIVENEHIIKRAGDISKYYDALISATNDYHRYGEGSHSANGVPFT 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLHELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ + E +Q+ + A E +A G +GLN
Sbjct: 244 TGTQHILNLLRNGHDDPEMAEIAAECEQECFDIFKAAAEQEKEWADYLFKDGSMIGLNKQ 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL P + T+NP PW++ +
Sbjct: 304 ILCQYVEYITNLRMVAVGLRPAYDGATQNPIPWINSWLSSDN 345
>gi|71892252|ref|YP_277986.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Blochmannia pennsylvanicus str. BPEN]
gi|71796358|gb|AAZ41109.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 376
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 70/341 (20%), Positives = 134/341 (39%), Gaps = 27/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M + ++ + K+ + + W P E+ + D ++S
Sbjct: 8 QNKNNQLLEPMFLGQPVNIARFDQQKHSIFEKLIEKQLSFFWRPEEIDISKDRIDFQS-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 66 -LPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELEIWVETWSFFETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
+II ++ +F+ I +A Y +++ +
Sbjct: 125 HIIRNIVNHPSLIFDDIISNKEILKRAKDISTYYDNLIELTSYYHILGPGIHQINNNTVA 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+ ++ L V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLHELKKKLYLCLISVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
N ++N ++ + E QQ+S + A E +A+ G +GLN
Sbjct: 244 NATQHILNLMRSGSDDPEMADISTECQQESYALFLMAAEQEKNWANYLFKDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
QY+++I N R IGL F N PW++ +
Sbjct: 304 ILCQYIEYITNIRMQAIGLRTPFNIKSNVIPWINSWLSSDN 344
>gi|238897538|ref|YP_002923217.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229465295|gb|ACQ67069.1| ribonucleoside-diphosphate reductase 1, beta subunit [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 376
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 132/336 (39%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ N + M ++ +V + KY E + W P E+ + D ++S
Sbjct: 8 QKKNNQLLEPMFLGQTVNVARYDQQKYPIFEELIEKQLSFFWRPEEIDVSRDRIDYQS-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 66 -LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL------ 186
+II ++ D +F+ I +A Y L + D +
Sbjct: 125 HIIRNIVNDPSCIFDDIVTNNEILKRAKDISAYYDDLIKMTSYYHLLDEGTHQVNGKTTV 184
Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLYALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLM 244
Query: 237 FGIDVI--NQIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++ + ++P + +E QQ+ + A E +A G +GLN
Sbjct: 245 GTQHMLDLMRSGKDDPEMADIAQECQQECSDLFLLAAQQEKEWAAYLFRDGSMIGLNQDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY++++ N R + L+ F NP PW++ +
Sbjct: 305 LCQYIEYMTNIRMQAVKLDAPFSIRTNPIPWINSWL 340
>gi|317506846|ref|ZP_07964618.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974]
gi|316254774|gb|EFV14072.1| ribonucleotide reductase [Segniliparus rugosus ATCC BAA-974]
Length = 332
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 66/356 (18%), Positives = 138/356 (38%), Gaps = 35/356 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+ P++ + D +++ A + N+++ K W+ N W+P +VP+ +D+
Sbjct: 1 MHPLETESSQKAPDKVKLVRA-INWNRVVDEKDSEVWD---RLVGNFWLPEKVPLSNDIQ 56
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W + L + E+ + R +++ +++ P AF E+V
Sbjct: 57 SWHT---LNEHEQQLTMRVFTGLTLLDTIQGAVGAVSLIPDALTPHEEAVYTNIAFMESV 113
Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ I ++L E F E P++ KA L+ +
Sbjct: 114 HAKSYSSIFSTLSNTPEIDEAFRWSEENPNLQRKAAIVLERYRGDD-------------- 159
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 160 -PLKRKVASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQR 218
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ +E + + ++L + E+ Y + VGL ++++++ AN+
Sbjct: 219 GLAASTEQRREELKDFTFSLLFDLYENEVEYTQDLY--DPVGLT-EDVKKFLRYNANKAL 275
Query: 305 HQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ +G E LF E NP + + + +FF + Y G + WD
Sbjct: 276 NNLGYEGLFPKDETSVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 331
>gi|209695249|ref|YP_002263178.1| ribonucleotide-diphosphate reductase subunit beta [Aliivibrio
salmonicida LFI1238]
gi|208009201|emb|CAQ79455.1| ribonucleoside-diphosphate reductase 1 beta chain [Aliivibrio
salmonicida LFI1238]
Length = 377
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/341 (20%), Positives = 136/341 (39%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+++ + + M S +V + K+ + + W P EV + D + N
Sbjct: 8 QEKNDQLKEPMFLGNSVNVARYDQQKFQVFEKLIEKQLSFFWRPEEVDVSGDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 NLPEHEQHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
+I+ ++ D +F+ E I +A Y L + T T + ++
Sbjct: 125 HIVRNIVNDPAIIFDDIVENEEILKRAKDIAHYYDNLIQATNDYHRFGEGTHTVNGEEII 184
Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSKRELKKTLYLCLMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P E +Q + A E +A+ G +GLN
Sbjct: 245 STQHMVNLLRTGQDDPEFVEIAAECEQDCFDLFKAAAEQEKEWANYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL + T+NP PW++ +
Sbjct: 305 LCQYVEYITNLRMKAVGLSGAYDGATQNPIPWINSWLSSDN 345
>gi|154283275|ref|XP_001542433.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1]
gi|150410613|gb|EDN06001.1| hypothetical protein HCAG_02604 [Ajellomyces capsulatus NAm1]
Length = 255
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 18/189 (9%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
D+ +L + L PLKY W+ Y A + W E+ + DL W N L DDER
Sbjct: 78 DEPLLQENPNRFVLFPLKYHEIWQMYKKAEASFWTAEEIDLSKDLHDWN--NRLNDDERY 135
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+V + PE R + Q E +HS T+ +I +
Sbjct: 136 FISHVLAFFAASDGIVNENLVERFSGEVQVPEARCFYGFQIMMENIHSETYSLLIDTYIK 195
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
+ + LF+ +P I KA+WA+++ + D D F Q L F V E
Sbjct: 196 EPKQRTYLFDAIETIPCIRKKADWAIRWIE------------DKDSTFAQRLVAFAAV-E 242
Query: 198 GMWFYTGFA 206
G++F FA
Sbjct: 243 GIFFSGSFA 251
>gi|322514736|ref|ZP_08067762.1| ribonucleotide-diphosphate reductase beta subunit [Actinobacillus
ureae ATCC 25976]
gi|322119331|gb|EFX91447.1| ribonucleotide-diphosphate reductase beta subunit [Actinobacillus
ureae ATCC 25976]
Length = 376
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 70/337 (20%), Positives = 132/337 (39%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D ++S
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A +S PE ++ F E +HS ++
Sbjct: 66 -LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ I +A Y L S +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQYQ 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L V+ E + FY FA + M G A+ ++I RDE LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNVL-EAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+++N + +E +Q++ + A E +A G +GLN
Sbjct: 244 TGTQNMLNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNED 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+Y+++I N R +GL F + NP PW++ +
Sbjct: 304 ILVKYVEYITNIRMQAVGLPRPFATSSNPIPWINAWL 340
>gi|54309624|ref|YP_130644.1| ribonucleotide-diphosphate reductase subunit beta [Photobacterium
profundum SS9]
gi|46914062|emb|CAG20842.1| putative ribonucleoside-diphosphate reductase,beta subunit
[Photobacterium profundum SS9]
Length = 377
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 73/335 (21%), Positives = 136/335 (40%), Gaps = 28/335 (8%)
Query: 21 DKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+ M +S +V + K+ + + W P EV + D + N L D E+
Sbjct: 15 KEPMFFGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSGDRIDY---NNLPDHEK 71
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
+ NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II ++
Sbjct: 72 HIFISNLKYQTLLDSIQGRSPNVALLPIVSIPELETWIETWSFSETIHSRSYTHIIRNIV 131
Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTL-----------------SSPSFTTGTKDAD 182
D +F+ E I +A +Y L + + T ++
Sbjct: 132 NDPAIVFDDIVENEYIIKRAGDISKYYDDLIAATSDYHRLGEGKHTVNGETITVNLREIK 191
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
++ + + E + FY FA + M G A+ + I RDE+LHL ++
Sbjct: 192 KKLYVCMMSVNAL-EAIRFYVSFACSFAFAEREVMEGNAKIIKLIARDEALHLTGTQHIL 250
Query: 243 NQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQ 297
N ++ + +E QQ+ + EA E +A G +GLN QY++
Sbjct: 251 NLLRGRHDDPEMADIAQECQQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKEILCQYVE 310
Query: 298 FIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKK 331
+I N R +GLE + +NP PW++ +
Sbjct: 311 YITNLRMKAVGLEQAYPGANQNPIPWINSWLSSDN 345
>gi|257464834|ref|ZP_05629205.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
minor 202]
gi|257450494|gb|EEV24537.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
minor 202]
Length = 326
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 64/320 (20%), Positives = 132/320 (41%), Gaps = 19/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
+ P +Y E + +++W+ TE D+ +++ +TD ER ++ R + +
Sbjct: 10 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--ITDHERHVLTRAMLAIS 67
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +YR+ PE A E H + +++ LGL+ E+F+ +
Sbjct: 68 QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 124
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
++ + + + + + EF+ L +F + E + + F ++S
Sbjct: 125 DIEPLMNRIRYMESFMKD---------KDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 175
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N GI+ + ++E +H FGI + ++ E+ L+T F ++ +T+ ++A
Sbjct: 176 FNKYKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPAFFEELQTLANQAF 235
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
E +G + ++ + Y++ N +GLEP W
Sbjct: 236 EAEKGILDWIFEEGDLSFISKETVLNYIKSRYNNSLVTLGLEPPHNINPELLKETAWFDI 295
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
I KE +FF R T+Y +
Sbjct: 296 EILSTKETDFFNKRSTDYSK 315
>gi|217973230|ref|YP_002357981.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
baltica OS223]
gi|304408853|ref|ZP_07390474.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS183]
gi|307302856|ref|ZP_07582611.1| Ribonucleoside-diphosphate reductase [Shewanella baltica BA175]
gi|217498365|gb|ACK46558.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS223]
gi|304352674|gb|EFM17071.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS183]
gi|306913216|gb|EFN43638.1| Ribonucleoside-diphosphate reductase [Shewanella baltica BA175]
gi|315267707|gb|ADT94560.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS678]
Length = 376
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 75/336 (22%), Positives = 131/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + M +S +V + KY + + W P EV + D +
Sbjct: 8 QTPNDATREPMFLGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---G 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
+II ++ D +F+ I ++A Y L + T D +
Sbjct: 125 HIIRNIVNDPSVIFDDIVVNKEILSRATDIAAYYDHLIQLTQVFHLLGAGTHVIDGKEVI 184
Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ + E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 185 VNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLN 244
Query: 237 FGIDV--INQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+ I Q ++P + E QQ++ + +A E +A G +GLN
Sbjct: 245 STQHILSIMQGGKDDPEMGEIAAECQQEAFDLFFKAAEQEKEWAKYLFKDGSMIGLNEQI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY++FI N+R + L + NP PWM +
Sbjct: 305 LCQYVEFITNQRMKSVNLPQPYPEITNPLPWMKNWL 340
>gi|53728876|ref|ZP_00348266.1| COG0208: Ribonucleotide reductase, beta subunit [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126207635|ref|YP_001052860.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
pleuropneumoniae L20]
gi|165975603|ref|YP_001651196.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|190149418|ref|YP_001967943.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303249851|ref|ZP_07336055.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303251971|ref|ZP_07338142.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307247133|ref|ZP_07529185.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|307249355|ref|ZP_07531349.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|307251676|ref|ZP_07533581.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307253912|ref|ZP_07535764.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307256172|ref|ZP_07537959.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|307258366|ref|ZP_07540107.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|307260605|ref|ZP_07542297.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|307262736|ref|ZP_07544363.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|126096427|gb|ABN73255.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165875704|gb|ABY68752.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|189914549|gb|ACE60801.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302649401|gb|EFL79586.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302651418|gb|EFL81570.1| ribonucleoside-diphosphate reductase beta subunit 1 [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306856382|gb|EFM88533.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|306858649|gb|EFM90711.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306860873|gb|EFM92881.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306863116|gb|EFM95058.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306865353|gb|EFM97249.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|306867550|gb|EFM99397.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306869682|gb|EFN01467.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|306871881|gb|EFN03598.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 325
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 65/320 (20%), Positives = 130/320 (40%), Gaps = 19/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
+ P +Y E + +++W+ TE D+ ++ + D ER ++ R + +
Sbjct: 9 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAMLAIS 66
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +YR+ PE A E H + +++ LGL+ E+F+ +
Sbjct: 67 QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
++ + + + + + EF+ L +F + E + + F ++S
Sbjct: 124 DIEPLMNRIRYMESFMKD---------KDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 174
Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N GI+ + ++E +H FGI + ++ E+ L+T EF + +T+ +A
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILREEHSELFTPEFFEDLKTLSSQAF 234
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
E +G + ++ E Y++ N +GLEP + W
Sbjct: 235 EAECGILDWIFEEGDLSFISREEVENYIRSRYNNSLMTLGLEPPYDVNPELLKETEWFDI 294
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
I KE +FF R T+Y +
Sbjct: 295 EILSTKETDFFNKRSTDYSK 314
>gi|307257037|ref|ZP_07538813.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306864521|gb|EFM96428.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 376
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 131/337 (38%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D ++S
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A +S PE ++ F E +HS ++
Sbjct: 66 -LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ I +A Y L S +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQYQ 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L V+ E + FY FA + M G A+ ++I RDE LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNVL-EAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+++N I +E +Q++ + A E +A G +GLN
Sbjct: 244 TGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNED 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+Y+++I N R +GL F NP PW++ +
Sbjct: 304 ILVKYVEYITNIRMQAVGLPRPFATASNPIPWINAWL 340
>gi|319944853|ref|ZP_08019115.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia
mirabilis ATCC 51599]
gi|319741423|gb|EFV93848.1| ribonucleotide-diphosphate reductase subunit beta [Lautropia
mirabilis ATCC 51599]
Length = 333
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 75/362 (20%), Positives = 132/362 (36%), Gaps = 40/362 (11%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
MA + + EK V + + N+L K W N W+P +VP
Sbjct: 1 MARQEQVIDMSNKEKARKV---PL---AINWNRLQDEKDLEVWN---RLTANFWLPEKVP 51
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ +D+ W + L ++E+ + R +++ ++ P L
Sbjct: 52 LSNDVQSWAT---LREEEQTLTIRVFTGLTLLDTIQNTVGAPSMMPDAQTPHEEAVLTNI 108
Query: 121 AFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
AF EAVH+ ++ I ++L E F E P + AKA L+ S P
Sbjct: 109 AFMEAVHARSYSSIFSTLCSTREVDEAFRWSEENPQLQAKARLILEEYDAASDP------ 162
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
+ V E FY+GF + K+ A+ + I+RDE++H +
Sbjct: 163 --------LQRKIASVFLESFLFYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYI 214
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
+ P + + ++L E +E Y E + +GL + ++ +
Sbjct: 215 GYKFQRALARLPEADQARLKDFAFSLLFELYEVEALYTEELYDR--IGLT-EDVKAFLHY 271
Query: 299 IANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----K 350
AN+ +G E LF NP +S + + +FF + Y G +
Sbjct: 272 NANKALQNLGYEALFPPAACEVNP-AILSALSPDSENHDFFSGSGSSYVIGKAVATEDED 330
Query: 351 WD 352
WD
Sbjct: 331 WD 332
>gi|33519930|ref|NP_878762.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Blochmannia floridanus]
gi|33504276|emb|CAD83168.1| ribonucleoside-diphosphate reductase 1 beta chain [Candidatus
Blochmannia floridanus]
Length = 376
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 71/341 (20%), Positives = 137/341 (40%), Gaps = 27/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M + ++ + K+ + + W P E+ + D ++S
Sbjct: 8 QNKNNQLLEPMFFGQPVNIARFDQQKHIIFEKLIEKQLSFFWRPEEIDISKDRIDYQS-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 66 -LPNHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELETWVETWSFFETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-----------------SSPSFT 175
+II ++ +F+ I +A Y L ++ + T
Sbjct: 125 HIIRNIVNHPSVIFDDIVTNKEILKRAKDISMYYDDLIKLTNYYYTLGIGKHRVNNTTIT 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+ ++ L V+ E + FY FA + M G A+ ++I RDESLHL
Sbjct: 185 VNLHELKKKLYLCLISVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIRFIARDESLHL 243
Query: 236 NFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
N ++N ++ + + Q++S + A E +AH G +GLN
Sbjct: 244 NATQHILNLMRSGSDDPEMVDISLICQEESYNLFLMAAEQEKTWAHYLFKDGSMIGLNKE 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
QY+++I N R IGL+ F N PW++ +
Sbjct: 304 ILCQYIEYITNIRMQAIGLKTPFNTKTNSIPWINAWLSSDN 344
>gi|307244959|ref|ZP_07527056.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306854124|gb|EFM86332.1| Ribonucleoside-diphosphate reductase, beta subunit 1
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
Length = 325
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 65/320 (20%), Positives = 130/320 (40%), Gaps = 19/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
+ P +Y E + +++W+ TE D+ ++ + D ER ++ R + +
Sbjct: 9 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAMLAIS 66
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +YR+ PE A E H + +++ LGL+ E+F+ +
Sbjct: 67 QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
++ + + + + + EF+ L +F + E + + F ++S
Sbjct: 124 DIEPLMNRIRYMESFMKD---------KDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 174
Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N GI+ + ++E +H FGI + ++ E+ L+T EF + +T+ +A
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIVLYEILREEHSELFTPEFFEDLKTLSSQAF 234
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
E +G + ++ E Y++ N +GLEP + W
Sbjct: 235 EAECGILDWIFEEGDLSFISREEVENYIRSRYNNSLMTLGLEPPYDVNPELLKETEWFDI 294
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
I KE +FF R T+Y +
Sbjct: 295 EILSTKETDFFNKRSTDYSK 314
>gi|325268103|ref|ZP_08134749.1| ribonucleotide-diphosphate reductase beta subunit [Kingella
denitrificans ATCC 33394]
gi|324980488|gb|EGC16154.1| ribonucleotide-diphosphate reductase beta subunit [Kingella
denitrificans ATCC 33394]
Length = 384
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 71/342 (20%), Positives = 131/342 (38%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + M + +V + KY + W P EV + D +
Sbjct: 15 KNPNDPLTEPMFFGQPVNVARYDQQKYIAFENLIEKQISFFWRPEEVDLSRDRIDY---A 71
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + + +S PE ++ AF E +HS ++
Sbjct: 72 NLPEHEKHIFISNLKYQTLLDSIQGRSPNVGFLPLVSIPELETWIETWAFFETIHSRSYT 131
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ + I A+A Y L +
Sbjct: 132 HIIRNIVNDPSVVFDDIVQNEYILARAEDIACYYDDLIEYTQYFNLLGEGTHTVNGKIVE 191
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+ ++ L V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 192 VSLHELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 250
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ + ++ QQ+ + +A E +A G +GLN
Sbjct: 251 TSTQHMLNLMRGGSEGTEWAQIAQDLQQECFDLFVKAAEQEKEWASYLFKDGSMIGLNKD 310
Query: 291 SCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
QY+++I N R +GL F T+NP PW++ +
Sbjct: 311 ILCQYVEYITNHRMLAVGLPVAFPKSTQNPIPWINAWLSSDN 352
>gi|322515075|ref|ZP_08068083.1| ribonucleoside-diphosphate reductase beta subunit [Actinobacillus
ureae ATCC 25976]
gi|322118955|gb|EFX91132.1| ribonucleoside-diphosphate reductase beta subunit [Actinobacillus
ureae ATCC 25976]
Length = 326
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 65/320 (20%), Positives = 132/320 (41%), Gaps = 19/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
+ P +Y E + +++W+ TE D+ ++ + D ER ++ R + +
Sbjct: 10 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQNYR--IDINDHERHVLTRAMLAIS 67
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +YR+ PE A E H + +++ LGL+ E+F+ +
Sbjct: 68 QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 124
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
++ + + + + + EF+ L +F + E + + F ++S
Sbjct: 125 DIEPLMNRIRYMESFMKD---------KDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 175
Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N GI+ + ++E +H FGI + ++ E+ L+T EF ++ +T+ +A
Sbjct: 176 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEELKTLSTQAF 235
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
E +G + ++ + E Y++ N +GLEP + W
Sbjct: 236 EAECGILDWIFEEGDLSFISREAVENYIRSRYNNSLMTLGLEPPYDVNPELLKETEWFDI 295
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
I KE +FF R T+Y +
Sbjct: 296 EILSTKETDFFNKRSTDYSK 315
>gi|295134784|ref|YP_003585460.1| ribonucleotide reductase [Zunongwangia profunda SM-A87]
gi|294982799|gb|ADF53264.1| ribonucleotide reductase [Zunongwangia profunda SM-A87]
Length = 324
Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats.
Identities = 69/320 (21%), Positives = 129/320 (40%), Gaps = 18/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y + + + W+ +EV D+ + S LT E+ ++K++L A
Sbjct: 7 RLNYKPFEYPGVLDFTDAINQSFWVHSEVDFTADVQDFHSH--LTTGEKDVVKKSLLAIA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E + +Y+HL PE A E HS + ++ LG + F
Sbjct: 65 QIEV-AVKSFWGDLYKHLPKPEFNGLGSTFAECEFRHSQAYSRLLEVLGYNNE--FAKVV 121
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
EVP+I + + + + + ++++ L +F ++ E + ++ FA +LS
Sbjct: 122 EVPAIKKRIAYLTE--------ALEHTKAEDPKDYVSSLILFSILIENVSLFSQFAIVLS 173
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
R M ++ + DE +H N GI +INQI+ E P + +E +K ++ +
Sbjct: 174 FNRFKGVMKNVSNIIAWTSVDEQIHANAGIYIINQIREEYPDYFNEEMTRKLTDVVTRSI 233
Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325
+E G +N + +M+F + IGL + T P W E
Sbjct: 234 EVEEEILDWIFENGQLENINKKNLMDFMKFRLDDSLKSIGLPKQYNITAAEYQPMLWFEE 293
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
+ +FF R +Y +
Sbjct: 294 EVFANSLDDFFARRPVDYTK 313
>gi|330445621|ref|ZP_08309273.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328489812|dbj|GAA03770.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 377
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 75/342 (21%), Positives = 142/342 (41%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ R + + M +S +V + K+ + + W P EV + D + N
Sbjct: 8 QTRNDQLKEPMFFGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSGDRINY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 NLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ + +F+ E I +A +Y L + + FT
Sbjct: 125 HIIRNIVNNPSVVFDDIVENEHIIKRAGDISKYYDALIAATNDYHRFGEGNHSADGVPFT 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + E +Q+ + A E +A G +GLN
Sbjct: 244 TGTQHILNLLRTGQDDPEMAEIAVECEQECFDIFKSAAEQEKDWADYLFKDGSMIGLNKQ 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL P ++ T+NP PW++ +
Sbjct: 304 ILCQYVEYITNLRMSAVGLRPAYEGATQNPIPWINSWLSSDN 345
>gi|261253084|ref|ZP_05945657.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
orientalis CIP 102891]
gi|260936475|gb|EEX92464.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
orientalis CIP 102891]
Length = 377
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 76/343 (22%), Positives = 132/343 (38%), Gaps = 25/343 (7%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
K + + L +V + K+ + + W P EV + D +
Sbjct: 6 FNRTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS +
Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122
Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT--------------- 175
+ +II ++ D G +F+ E I +A Y L +
Sbjct: 123 YTHIIRNIVNDPGLVFDDIVENEHILKRAKDISGYYDDLIQLTNDYHRYGEGTHTINGEE 182
Query: 176 -TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T T ++ L + E + FY FA + M G A+ + I RDE+LH
Sbjct: 183 VTITLHNLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L +IN ++ +E +Q+ + EA E +A G +GLN
Sbjct: 243 LTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNK 302
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL + T NP PW++ +
Sbjct: 303 DILCQYVEYITNIRMQAVGLGAAYPEATSNPIPWINAWLSSDN 345
>gi|240950330|ref|ZP_04754600.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
minor NM305]
gi|240295141|gb|EER45960.1| ribonucleoside-diphosphate reductase beta chain [Actinobacillus
minor NM305]
Length = 326
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 64/320 (20%), Positives = 131/320 (40%), Gaps = 19/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
+ P +Y E + +++W+ TE D+ +++ +TD ER ++ R + +
Sbjct: 10 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--ITDHERHVLTRAMLAIS 67
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +YR+ PE A E H + +++ LGL+ E+F+ +
Sbjct: 68 QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIQ 124
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
++ + + + + + EF+ L +F + E + + F ++S
Sbjct: 125 DIEPLMNRIRYMESFMKD---------KDAGKGEFVLSLVLFSLFVEHISLFGQFLIMMS 175
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N GI+ + ++E +H FGI + ++ E+ L+T F ++ +T+ +A
Sbjct: 176 FNKYKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPAFFEELQTLASQAF 235
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
E +G + ++ + Y++ N +GLEP W
Sbjct: 236 EAEKGILDWIFEEGDLSFISKETVLNYIKSRYNNSLVTLGLEPPHDINPELLKETAWFDI 295
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
I KE +FF R T+Y +
Sbjct: 296 EILSTKETDFFNKRSTDYSK 315
>gi|163803511|ref|ZP_02197381.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4]
gi|159172687|gb|EDP57538.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp. AND4]
Length = 377
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 74/341 (21%), Positives = 133/341 (39%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + K+ + + W P EV + D + N
Sbjct: 8 QNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFV 191
+II ++ D +F+ E I +A Y L + + + +
Sbjct: 125 HIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHLLNGETVK 184
Query: 192 FYVV---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDESLHLN
Sbjct: 185 VSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDESLHLN 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ +E +Q+ + EA E +A G +GLN
Sbjct: 245 GTQHMINLLRNGQDDFIFMQIAEEVKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL + T NP PW++ +
Sbjct: 305 LSQYVEYITNIRMQAVGLPKAYPEATTNPIPWINAWLSSDN 345
>gi|307129979|ref|YP_003881995.1| Ribonucleotide reductase of class Ia (aerobic), subunit beta
[Dickeya dadantii 3937]
gi|306527508|gb|ADM97438.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Dickeya dadantii 3937]
Length = 376
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 69/337 (20%), Positives = 130/337 (38%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLLEPMFFGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ I +A + L +
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEEILKRAKDISGFYDELIELTSYYHLLGEGTHQVNGKTVN 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 INVYELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ +E QQ+ + A E +A G +GLN
Sbjct: 244 TGTQHMLNLMRAGQDDPEMAKIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLPLPFETRTNPIPWINAWL 340
>gi|117920413|ref|YP_869605.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella sp.
ANA-3]
gi|117612745|gb|ABK48199.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Shewanella sp. ANA-3]
Length = 391
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 72/337 (21%), Positives = 133/337 (39%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + M +S +V + KY + + W P EV + D + S
Sbjct: 23 QTPNDATREPMFFGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDYNS-- 80
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 81 -LPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 139
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ I +A +Y L +
Sbjct: 140 HIIRNIVNDPSVIFDDIVVNQEILRRATDIAEYYDHLIKLTQVYHLLGEGTHVIDGEPIE 199
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
T+ + + + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 200 VNTRTLKKALYLCMMSVNAL-EAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHL 258
Query: 236 NFGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
N ++ ++ ++P + E QQ++ + +A E +A G +GLN
Sbjct: 259 NSTQHILTIMQGGKDDPEMAEIAAECQQEAYNLFLKAAEQEKEWAKYLFKDGSMIGLNEQ 318
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N+R + L + NP PWM +
Sbjct: 319 ILCQYVEYITNQRMKSVNLPLPYAELSNPLPWMKNWL 355
>gi|153000811|ref|YP_001366492.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
baltica OS185]
gi|160875520|ref|YP_001554836.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
baltica OS195]
gi|151365429|gb|ABS08429.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS185]
gi|160861042|gb|ABX49576.1| Ribonucleoside-diphosphate reductase [Shewanella baltica OS195]
Length = 386
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 75/336 (22%), Positives = 131/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + M +S +V + KY + + W P EV + D +
Sbjct: 18 QTPNDATREPMFLGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---G 74
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 75 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 134
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
+II ++ D +F+ I ++A Y L + T D +
Sbjct: 135 HIIRNIVNDPSVIFDDIVVNKEILSRATDIAAYYDHLIQLTQVFHLLGAGTHVIDGKEVI 194
Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ + E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 195 VNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLN 254
Query: 237 FGIDV--INQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+ I Q ++P + E QQ++ + +A E +A G +GLN
Sbjct: 255 STQHILSIMQGGKDDPEMGEIAAECQQEAFDLFFKAAEQEKEWAKYLFKDGSMIGLNEQI 314
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY++FI N+R + L + NP PWM +
Sbjct: 315 LCQYVEFITNQRMKSVNLPQPYPEITNPLPWMKNWL 350
>gi|119944866|ref|YP_942546.1| ribonucleotide-diphosphate reductase subunit beta [Psychromonas
ingrahamii 37]
gi|119863470|gb|ABM02947.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Psychromonas ingrahamii 37]
Length = 381
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 72/341 (21%), Positives = 125/341 (36%), Gaps = 38/341 (11%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGW----AWEK-YLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + M VN +Y +E + W P E+ + D +
Sbjct: 12 DAMKEPMFFGNP-VNV---ARYDQQRFAVFEMLIEKQLSFFWRPEEIDVSRDRIDF---L 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 NLPDHEQHIFISNLKYQTLLDSIQGRSPNIALLPIVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----FTTGTKDADQEFLQ 187
+I+ +L + E+F I +A Y L + D D L+
Sbjct: 125 HILRNLFTEPAEIFEDIVTNVEIQKRATDISGYYDALIHATQFMQLHGLEQTDIDYINLE 184
Query: 188 D----------------LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
+ E + FY FA + + + G A+ + I RDE
Sbjct: 185 NQVEKLNLRAIKKKLYLCICSVNALEAIRFYVSFACSFAFAERDLLEGNAKIIKLIARDE 244
Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAHETMPKG-FVG 286
+LHLN ++N E + + +A E +A G +G
Sbjct: 245 ALHLNSTQQILNLWADGKDDPEMAEIAIECFAEGREIFLQAAQQEKDWAKYLFKDGSMIG 304
Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
LN QY+++IAN R IG P F+ NP PW++ +
Sbjct: 305 LNEQILSQYVEYIANLRMQAIGYAPEFEVKSNPIPWINNWL 345
>gi|322832009|ref|YP_004212036.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
gi|321167210|gb|ADW72909.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
Length = 376
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 73/337 (21%), Positives = 135/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + K+ + + W P E+ + D ++
Sbjct: 8 QNKNDQLLEPMFFGQSVNVARFDQQKHEIFEKLIEKQLSFFWRPEEIDVSRDRIDFQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPDHEKHIFLSNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y TL +
Sbjct: 125 HIIRNIVNDPAIVFDDIVTNEEILKRAKDISGYYDTLIEMTSYYHLLGEGTHQVNGKTVV 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRELKKKLYICLMSVNAL-EAVRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 243
Query: 236 NFGIDVIN--QIKIENPHLWTK--EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+N + ++P + E QQ+ + A E +A G +GLN
Sbjct: 244 TGTQHALNLLRSGQDDPEMAEIALECQQECHDLFVLAAQQEKDWAEYLFKDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ FK NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLDAPFKTRSNPIPWINAWL 340
>gi|21672460|ref|NP_660527.1| ribonucleotide-diphosphate reductase subunit beta [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gi|25091143|sp|Q8K9W4|RIR2_BUCAP RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|21623075|gb|AAM67738.1| ribonucleoside-diphosphate reductase 1 beta chain [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 376
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 72/339 (21%), Positives = 137/339 (40%), Gaps = 25/339 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ N + M +S ++ + KY + + W P E+ + D + +
Sbjct: 8 KKKNNQLKEPMFFGQSVNIARYDQQKYNIFEKLIEKQLSFFWRPEEIDLSKDRIDF---D 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L +E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 65 NLPSNEKHIFISNLKYQTLLDSIQGRSPNIAFLPIVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ + +F+ +I +A Y L +
Sbjct: 125 HIIRNIINNPSIVFDDIISNKNINDRAQDISIYYDELIRITAYWHLLGEGNHKINEKKVE 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ L + V E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 INLKLLKRRLYLCLISVNVLEAIRFYVSFACSFAFAEREIMEGNAKIIRLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + E + K E ++++ + A+ E +A G +GLN
Sbjct: 245 GTQHILNILNNEKNNENMKNTVLECREEAIKIFISASEQEKKWAKYLFQDGSMLGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
QY+++I N R H IG + F+ T NP PW++ ++
Sbjct: 305 LCQYIEYITNIRMHAIGFKMPFEKTSNPIPWINSWLNSD 343
>gi|118602534|ref|YP_903749.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Ruthia magnifica str. Cm (Calyptogena magnifica)]
gi|118567473|gb|ABL02278.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
Length = 378
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 71/332 (21%), Positives = 132/332 (39%), Gaps = 25/332 (7%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M S +V + K+ + + W P E+ + D + + L +E+
Sbjct: 16 QPMFFGDSMNVTRFDKQKFEIFEKLTEKQLSFFWRPEEIDVSKDKIDF---SKLLPNEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ +A +S PE ++ +F E +HS ++ +II ++
Sbjct: 73 IFVSNLQYQILLDSVQGRAPNIAFLPIVSLPEVENWIETWSFSETIHSRSYTHIIRAIIN 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSP--------SFTTGTKDADQEFLQDL--- 189
+ G +F+ + I +A A ++ L + ++ +
Sbjct: 133 EPGVIFDDIMKTDEIIQRAESASKHYDGLIKYTQAYLLHGTGKLKIQEEEVSIDLYCLKK 192
Query: 190 -----FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 193 QLYLTIMSVNILEAVRFYVSFACSFAFAERKVMEGNAKIIKMIARDEALHLTGTQHMLNL 252
Query: 245 IKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
+ L + E Q + TM EA E +A G +GLNA +QY+++I
Sbjct: 253 MSSGKDDLDMQKISKECQDEVITMFREACEQEKDWAEYLFRDGSMIGLNAQILKQYLEYI 312
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
N R + L +F NP PW++ +D
Sbjct: 313 TNVRMKALNLSLIFDECTNPLPWINHWLDSDN 344
>gi|311064961|ref|YP_003971687.1| ribonucleoside-diphosphate reductase subunit beta NrdF
[Bifidobacterium bifidum PRL2010]
gi|310867281|gb|ADP36650.1| NrdF Ribonucleoside-diphosphate reductase beta chain
[Bifidobacterium bifidum PRL2010]
Length = 330
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 65/351 (18%), Positives = 131/351 (37%), Gaps = 32/351 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+
Sbjct: 1 MAPISVPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W+ ++DDE + +++ +++ P AF E+V
Sbjct: 55 SWQ---KMSDDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111
Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ I ++L + F+ + KA L Y + S
Sbjct: 112 HAKSYSSIFSTLCSTKEIDTAFDWSERNEFLQKKAEIVLDYYEGDS-------------- 157
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 158 -PLKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQR 216
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+E ++ + +L+E E+ Y + VGL E+++++ N+
Sbjct: 217 GLERVSDAKREEMREYTYNLLNELYDNEVEYTESLYER--VGLT-DDVEKFLRYNGNKAL 273
Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+G LF NP + + + +FF + Y G + D
Sbjct: 274 MNLGYPALFPAEACDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324
>gi|293193572|ref|ZP_06609842.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
odontolyticus F0309]
gi|292819928|gb|EFF78930.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces
odontolyticus F0309]
Length = 320
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 68/341 (19%), Positives = 128/341 (37%), Gaps = 35/341 (10%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ + + N++ K W+ N W+P ++P+ +DL WK+ LT DE+LM
Sbjct: 4 EPVF-EAINWNKIQDDKDLEVWD---RLTGNFWLPEKIPLSNDLPSWKT---LTKDEQLM 56
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
R ++L +++ P AF E+VH+ ++ I ++L
Sbjct: 57 TNRVFTGLTLLDTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLST 116
Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
E E F E ++ KA Y + V + E
Sbjct: 117 EEINESFRWSNENEALQKKAEIVKSYYDGND---------------PEKRKVASTMLESF 161
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
FY+GF + K+ A+ + I+RDE++H + E+ + +
Sbjct: 162 LFYSGFYAPMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVNESSQERQDDLRD 221
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-- 317
+ ++L+E E Y + +GL ++++++ AN+ +G E LF
Sbjct: 222 YTYSLLYELYENEEQYTEDLY--DPLGLT-EDVKKFLRYNANKALMNLGYEALFPADATD 278
Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
NP + + + +FF + Y G + WD
Sbjct: 279 VNPAILAALSPNADENHDFFSGSGSSYVMGEVVDTEDEDWD 319
>gi|224283650|ref|ZP_03646972.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
bifidum NCIMB 41171]
gi|310288088|ref|YP_003939347.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium
bifidum S17]
gi|313140805|ref|ZP_07802998.1| ribonucleoside-diphosphate reductase subunit beta [Bifidobacterium
bifidum NCIMB 41171]
gi|309252025|gb|ADO53773.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium
bifidum S17]
gi|313133315|gb|EFR50932.1| ribonucleoside-diphosphate reductase subunit beta [Bifidobacterium
bifidum NCIMB 41171]
Length = 330
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 65/351 (18%), Positives = 131/351 (37%), Gaps = 32/351 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+
Sbjct: 1 MAPISVPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W+ ++DDE + +++ +++ P AF E+V
Sbjct: 55 SWQ---KMSDDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111
Query: 127 HSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ I ++L + F+ + KA L Y + S
Sbjct: 112 HAKSYSSIFSTLCSTKEIDAAFDWSERNEFLQKKAEIVLDYYEGDS-------------- 157
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 158 -PLKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQR 216
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+E ++ + +L+E E+ Y + VGL E+++++ N+
Sbjct: 217 GLERVSDAKREEMREYTYNLLNELYDNEVEYTESLYER--VGLT-DDVEKFLRYNGNKAL 273
Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+G LF NP + + + +FF + Y G + D
Sbjct: 274 MNLGYPALFPAEACDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324
>gi|238920521|ref|YP_002934036.1| ribonucleotide-diphosphate reductase subunit beta [Edwardsiella
ictaluri 93-146]
gi|238870090|gb|ACR69801.1| ribonucleoside-diphosphate reductase, beta subunit, putative
[Edwardsiella ictaluri 93-146]
Length = 376
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 67/336 (19%), Positives = 128/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M + +V + K+ + + W P EV + D ++
Sbjct: 8 QKKNDQLLEPMFFGQPVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFL----- 186
+II ++ D +F+ I +A Y L + + + +
Sbjct: 125 HIIRNIVTDPSLVFDDIVSNEEILKRARDISAYYDDLIETTGYYHLLGEGTHQINGKPVT 184
Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ E + + +A E +A G +GLN
Sbjct: 245 GTQHILNLMRAGQDDPEMAEIATECASQCYDLFVQAAQQEKEWAGYLFRDGSMIGLNRDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLPLPFETRSNPIPWINAWL 340
>gi|149190928|ref|ZP_01869191.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii
AK1]
gi|148835283|gb|EDL52257.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio shilonii
AK1]
Length = 377
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 74/342 (21%), Positives = 134/342 (39%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M + +V + K+ + + W P EV + D + N
Sbjct: 8 QTKNNALKEPMFLGQPVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF-----------------T 175
+II ++ D G +F+ E I +A Y L +
Sbjct: 125 HIIRNIVNDPGVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRFGEGTHNIKGEEVK 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
D ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLYDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+IN ++ +E +Q + EA E +A G +GLN
Sbjct: 244 TGTQHMINLLRNGQDDFSFMQIAEECKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I+N R +GL+ + T NP PW++ +
Sbjct: 304 ILCQYVEYISNVRMQAVGLDAAYPEATSNPIPWINAWLSSDN 345
>gi|325955614|ref|YP_004239274.1| ribonucleotide reductase [Weeksella virosa DSM 16922]
gi|323438232|gb|ADX68696.1| ribonucleotide reductase [Weeksella virosa DSM 16922]
Length = 324
Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats.
Identities = 66/320 (20%), Positives = 121/320 (37%), Gaps = 18/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y + W+ +EV D + S L ER IK +L A
Sbjct: 7 RINYKPFEYPEILTFTEAINKAFWVHSEVDFTADTQDFHSHLNL--AERTAIKHSLLAIA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E IY H PE A E HS + ++ LG ++ F
Sbjct: 65 QIEV-AVKTFWGDIYDHFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNDD--FQTLL 121
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
++P I + ++ S + + ++ L +F ++ E + ++ FA ILS
Sbjct: 122 DIPVIKGRVDY--------LSNALKDAKSSDRKSYVISLILFSILIENVSLFSQFAIILS 173
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
R M ++ + DE +H N GI ++N+IK E P +++E Q+ + ++ +
Sbjct: 174 FTRFKGYMKNVSNIIAWTSVDEQIHANAGIYIVNKIKEEFPDFFSEETIQEIKNVVTHSI 233
Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
+E +G + +M++ + +IG ++ T P W E
Sbjct: 234 EVESQILDWIFEQGEIETIKKKDLLNFMKYRVDESMLKIGFGKIYNITAEQYQPMVWFEE 293
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
+ +FF R +Y +
Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313
>gi|323650974|ref|YP_004243617.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. natto]
gi|323461614|dbj|BAJ77030.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. natto]
Length = 347
Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats.
Identities = 73/334 (21%), Positives = 130/334 (38%), Gaps = 13/334 (3%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+RM + S + + +E W+P EV M D W + + + E+ +
Sbjct: 20 ERMFDDVSGILFWDDIINQVYYELIKEMREVFWIPDEVSMSKDKVQWAT--EMNEMEQEL 77
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
+G A +S+ +A Y ++ + + + A E +H+ ++ YI++S+
Sbjct: 78 FLNAIGILAVLDSIATYFDNVAAY-YIRDSAIKALMAFVAAMETIHNESYTYILSSVSSK 136
Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
+ +V K + ++ L F ++ E V EG+ F
Sbjct: 137 -----AVSLDVFERPKKNEFMIR-RNKLMMDLFDEFIQNPTPETFAKGLVAMSGLEGLCF 190
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
GF R KM G QYI RDE H F ++ I + P L T+EF +
Sbjct: 191 VNGFTPFYHFNRNGKMFGTGTVIQYIQRDEMKHSYFQTILVRDILTQYPELNTEEFSEFV 250
Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
E LE + + K ++ ++Y+ + AN +GL+ +F +NP P
Sbjct: 251 YDFFTELVQLEREFCEDLY-KNTPDIDIEEVKEYIGYRANLILDNLGLDQIFAAKKNPMP 309
Query: 322 W---MSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
W +++FFE + Y + E K D
Sbjct: 310 WITAFDPDNLNNTKRDFFEDKEVNYGKANEQKND 343
>gi|238761950|ref|ZP_04622923.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
kristensenii ATCC 33638]
gi|238699678|gb|EEP92422.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
kristensenii ATCC 33638]
Length = 400
Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats.
Identities = 70/336 (20%), Positives = 129/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M +S +V + K+ + + W P E+ + D + N
Sbjct: 32 QNKNNQLLEPMFFGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 88
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 89 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 148
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y L +
Sbjct: 149 HIIRNIVNDPSIVFDDIVTNEEILKRAKDISGYYDDLIEMTSYYHLLGEGTHQVNGKTVV 208
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 209 VNLRELKKQLYLCVMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLT 268
Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ E ++ + ++ A E +A G +GLN
Sbjct: 269 GTQHIINLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKEI 328
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F NP PW++ +
Sbjct: 329 LCQYVEYITNIRMQAVGLGVPFNTRTNPIPWINSWL 364
>gi|212635281|ref|YP_002311806.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
piezotolerans WP3]
gi|212556765|gb|ACJ29219.1| Ribonucleoside-diphosphate reductase, beta subunit [Shewanella
piezotolerans WP3]
Length = 376
Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats.
Identities = 72/311 (23%), Positives = 118/311 (37%), Gaps = 24/311 (7%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
KY + + W P EV + D + S L E+ + NL + +S+
Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSKDKIDYAS---LPAHEKHIFISNLKYQTLLDSIQG 89
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+ +A +S PE ++ +F E +HS ++ +II ++ D +F+ E I
Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVENEEILK 149
Query: 158 KANWALQYTQTLS----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
+A Y L TK ++ L V V E + F
Sbjct: 150 RATDIAAYYDKLIRLSQACQLLGEGSHQIDGEVVEVTKREIKKALYLCMVSVNVLEAIRF 209
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
Y FA + N M G A+ + I RDE+LHLN ++ + E ++
Sbjct: 210 YVSFACSFAFAERNVMEGNAKIIRLIARDEALHLNSTQHILKIMHAGKDDPEMAEIAKEC 269
Query: 262 RT----MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ +A E +A G +GLN QY+++I N R + LE +
Sbjct: 270 EQTAIDIFVKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVEYITNERMKAVNLESPYAEQ 329
Query: 317 ENPFPWMSEVI 327
NP PWM +
Sbjct: 330 SNPLPWMKNWL 340
>gi|291455662|ref|ZP_06595052.1| ribonucleoside-diphosphate reductase, beta subunit [Bifidobacterium
breve DSM 20213]
gi|291382590|gb|EFE90108.1| ribonucleoside-diphosphate reductase, beta subunit [Bifidobacterium
breve DSM 20213]
Length = 330
Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats.
Identities = 65/351 (18%), Positives = 130/351 (37%), Gaps = 32/351 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+
Sbjct: 1 MAPISIPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W+ +T+DE + +++ +++ P AF E+V
Sbjct: 55 SWQ---KMTEDEHTLTMHVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111
Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ I ++L E F+ + KA L Y + +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ + Q + +L+E E+ Y + VGL E+++++ N+
Sbjct: 217 GIAQLTDAERMDMQDYTYDLLNELYDNEVEYTQSLYDR--VGLT-EDVEKFLRYNGNKAL 273
Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+G LF NP + + + +FF + Y G + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324
>gi|85059563|ref|YP_455265.1| ribonucleotide-diphosphate reductase subunit beta [Sodalis
glossinidius str. 'morsitans']
gi|84780083|dbj|BAE74860.1| ribonucleoside-diphosphate reductase 1 beta subunit [Sodalis
glossinidius str. 'morsitans']
Length = 376
Score = 153 bits (385), Expect = 6e-35, Method: Composition-based stats.
Identities = 72/328 (21%), Positives = 128/328 (39%), Gaps = 25/328 (7%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M +S +V + KY + + W P EV + D ++ L + E+
Sbjct: 16 EPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + +A+ +S PE ++ AF E +HS ++ +II ++
Sbjct: 73 IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVN 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTTGTKDADQE 184
D +F+ I +A Y L + ++
Sbjct: 133 DPSLVFDDIVTNEEILKRAKDISGYYDGLIELTSYYHLLGEGTHQVNGKTVVVNLHELKK 192
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
L + E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 193 KLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTSTQHMLNL 252
Query: 245 IKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
++ +E QQ+S + A E +A G +GLN QY+++I
Sbjct: 253 MRSGEDDPEMAEIARECQQESYDLFLLAAQQEKEWASYLFRDGSMIGLNKDILCQYVEYI 312
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVI 327
N R +GL+ F NP PW++ +
Sbjct: 313 TNIRMQSVGLDLPFATRSNPIPWINSWL 340
>gi|269139684|ref|YP_003296385.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202]
gi|267985345|gb|ACY85174.1| ribonucleotide reductase, beta subunit [Edwardsiella tarda EIB202]
gi|304559553|gb|ADM42217.1| Ribonucleotide reductase of class Ia, beta subunit [Edwardsiella
tarda FL6-60]
Length = 376
Score = 153 bits (385), Expect = 6e-35, Method: Composition-based stats.
Identities = 67/336 (19%), Positives = 129/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M + +V + K+ + + W P EV + D ++
Sbjct: 8 QKKNDQLLEPMFFGQPVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFL----- 186
+II ++ D +F+ I +A Y L + + + +
Sbjct: 125 HIIRNIVTDPALVFDDIVSNEEILKRARDISAYYDDLIESTGYYHLLGEGTHQINGKPVS 184
Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ E + + + +A E +A G +GLN
Sbjct: 245 GTQHILNLMRSGQDDPEMAEIAAECEDQCYDLFVQAAQQEKEWAGYLFRDGSMIGLNRDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLSLPFETRSNPIPWINAWL 340
>gi|148825799|ref|YP_001290552.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae PittEE]
gi|148715959|gb|ABQ98169.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae PittEE]
Length = 376
Score = 153 bits (385), Expect = 6e-35, Method: Composition-based stats.
Identities = 72/336 (21%), Positives = 130/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D +
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFSWRPEEVDVSQDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
+II ++ D +F+ I +A Y L S T T D +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAQDISSYYDDLIRDSQLYGLYGEGTYTVDGKECV 184
Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ + E + FY FA + M G A+ ++I RDE+LHL
Sbjct: 185 VTLRSLKKQLYLCLMSVNALEAIRFYVSFACSFAFAERRLMEGNAKIIKFIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + +E +Q++ + A E A+A G +GLN
Sbjct: 245 GTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQEKAWADYLFKDGSMIGLNRDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LVQYVEYITNIRMQAVGLPLPFQTRSNPIPWINAWL 340
>gi|42543287|pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
Ferrous Ions At Neutral Ph
gi|42543288|pdb|1PJ0|B Chain B, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
Ferrous Ions At Neutral Ph
gi|42543289|pdb|1PJ1|A Chain A, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
gi|42543290|pdb|1PJ1|B Chain B, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
Length = 375
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 136/337 (40%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + + P EV + D ++
Sbjct: 7 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFFRPEEVDVSRDRIDYQ--- 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + ES+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 64 ALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L + T
Sbjct: 124 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVT 183
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 184 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 242
Query: 236 NFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + ++P + +E +Q+ + +A E +A G +GLN
Sbjct: 243 TGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKD 302
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F NP PW++ +
Sbjct: 303 ILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWL 339
>gi|312885176|ref|ZP_07744856.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309367189|gb|EFP94761.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 377
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 72/343 (20%), Positives = 132/343 (38%), Gaps = 25/343 (7%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
K + + L +V + K+ + + W P EV + D +
Sbjct: 6 FNRTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDF-- 63
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
N L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS +
Sbjct: 64 -NKLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRS 122
Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT--------------- 175
+ +II ++ D G +F+ E I +A Y L +
Sbjct: 123 YTHIIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDLIQLTNDYHRYGEGKHVIGGEE 182
Query: 176 -TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
+ ++ L + E + FY FA + M G A+ + I RDE+LH
Sbjct: 183 VNVSLHNLKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242
Query: 235 LNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L +IN ++ +E +Q+ + +A E +A G +GLN
Sbjct: 243 LTGTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKDAAEQEKEWAEYLFKDGSMIGLNK 302
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL+ + T NP PW++ +
Sbjct: 303 DILSQYVEYITNIRMQAVGLDAAYPEATSNPIPWINAWLSSDN 345
>gi|323494790|ref|ZP_08099889.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
brasiliensis LMG 20546]
gi|323310983|gb|EGA64148.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
brasiliensis LMG 20546]
Length = 377
Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats.
Identities = 73/340 (21%), Positives = 134/340 (39%), Gaps = 26/340 (7%)
Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+ + + M +S +V + K+ + + W P EV + D + N
Sbjct: 9 NKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NK 65
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +
Sbjct: 66 LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRSYTH 125
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT----------------TG 177
II ++ D G +F+ E I +A Y L + T
Sbjct: 126 IIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDLIQMTNDYHRYGEGTHQINGEEVTI 185
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 186 KLHDLKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTG 245
Query: 238 GIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
+IN ++ +E +Q+ + +A E +A G +GLN
Sbjct: 246 TQHMINLLRNGQDDFSFMQIAEECKQECFDLFKDAAEQEKEWAEYLFKDGSMIGLNKDIL 305
Query: 293 EQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL+ + T NP PW++ +
Sbjct: 306 CQYVEYITNIRMQAVGLDAAYPEATSNPIPWINAWLSSDN 345
>gi|293395206|ref|ZP_06639492.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582]
gi|291422383|gb|EFE95626.1| ribonucleoside-diphosphate reductase [Serratia odorifera DSM 4582]
Length = 376
Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 133/336 (39%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + K+ + + W P EV + D ++
Sbjct: 8 QNKNDQLLEPMFFGQSVNVARFDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFL----- 186
+II ++ D +F+ I +A Y L + + + +
Sbjct: 125 HIIRNIVNDPALVFDDIVTNEEIKKRAKDISGYYDDLIEMTSYYHLLGEGTHQVNGQSVT 184
Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ ++P + E QQ+ + A E +A G +GLN
Sbjct: 245 GTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAQQEKEWAEYLFSGGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL FK NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLGAPFKTRSNPIPWINAWL 340
>gi|23335914|ref|ZP_00121145.1| COG0208: Ribonucleotide reductase, beta subunit [Bifidobacterium
longum DJO10A]
gi|189440326|ref|YP_001955407.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
longum DJO10A]
gi|189428761|gb|ACD98909.1| Ribonucleotide reductase beta subunit [Bifidobacterium longum
DJO10A]
Length = 330
Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats.
Identities = 65/351 (18%), Positives = 130/351 (37%), Gaps = 32/351 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
++PI K + + D+ + + N+L K W+ N W+P +VP+ +D+
Sbjct: 1 MAPISIPRKPLKLIDR---VSAINWNRLEDEKDLEVWD---RLTGNFWLPEKVPVSNDIP 54
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
W+ +T+DE + R +++ +++ P AF E+V
Sbjct: 55 SWQ---KMTEDEHTLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESV 111
Query: 127 HSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ I ++L E F+ + KA L Y + +
Sbjct: 112 HAKSYSSIFSTLCSTEQIDAAFDWSENNEFLQKKAEIVLDYYEG---------------D 156
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
V + E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 157 NPYKRKVASTLLESFLFYSGFYLPMYFSAHAKLTNTADVIRLIIRDEAVHGYYIGYKYQK 216
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ + Q + +L+E E+ Y + V L E+++++ N+
Sbjct: 217 GIAQLSDAERLDLQDYTYDLLNELYDNEVEYTQSLYDR--VDLT-DDVEKFLRYNGNKAL 273
Query: 305 HQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
+G LF NP + + + +FF + Y G + D
Sbjct: 274 MNLGYPALFPAEICDVNPAILAALSPNADENHDFFSGSGSSYVMGKAEETD 324
>gi|50120137|ref|YP_049304.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
atrosepticum SCRI1043]
gi|49610663|emb|CAG74108.1| ribonucleoside-diphosphate reductase 1 beta chain [Pectobacterium
atrosepticum SCRI1043]
Length = 376
Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats.
Identities = 74/336 (22%), Positives = 134/336 (39%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLLEPMFFGQSVNVARFDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y +L + T
Sbjct: 125 HIIRNIVNDPSLVFDDIVANEEILKRAKDISGYYDSLIEMTSYYHLLGEGTHQVNGKTVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLHALKKQLYVCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ + +E QQ+ + A E +A G +GLN
Sbjct: 245 GTQHMLNLMRSGHDDPEMAQIAEECQQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQGVGLSLPFQTRTNPIPWINAWL 340
>gi|89074073|ref|ZP_01160574.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
sp. SKA34]
gi|89050211|gb|EAR55722.1| ribonucleotide-diphosphate reductase beta subunit [Photobacterium
sp. SKA34]
Length = 377
Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats.
Identities = 74/342 (21%), Positives = 139/342 (40%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ R + + M +S +V + K+ + + W P EV + D + N
Sbjct: 8 QTRNDQLKEPMFFGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSGDRINY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 NLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPIVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ + +F+ E I +A +Y L + + FT
Sbjct: 125 HIIRNIVNNPSVVFDDIVENEHIVKRAGDISKYYDDLITVTNDYNRFGEGNHSANGIPFT 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ + E +Q + A E +A G +GLN
Sbjct: 244 TGTQHILNLLRNGHDDPEMVEIATECEQDCFDLFKAAAEQEKEWADYLFKDGSMIGLNKQ 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL P ++ T+NP PW++ +
Sbjct: 304 ILCQYVEYITNLRMVAVGLRPAYEGATQNPIPWINSWLSSDN 345
>gi|188533366|ref|YP_001907163.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia
tasmaniensis Et1/99]
gi|188028408|emb|CAO96269.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
tasmaniensis Et1/99]
Length = 376
Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats.
Identities = 73/336 (21%), Positives = 134/336 (39%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLLEPMFFGQPVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I ++A Y L + T
Sbjct: 125 HIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGEGTHQVNGKTIT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ E ++ R ++ A E +A G +GLN
Sbjct: 245 GTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQEKEWAEYLFSGGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R + +GL+ FK NP PW++ +
Sbjct: 305 LCQYIEYITNIRMNAVGLDLPFKTRSNPIPWINSWL 340
>gi|300717619|ref|YP_003742422.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
billingiae Eb661]
gi|299063455|emb|CAX60575.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
billingiae Eb661]
Length = 376
Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats.
Identities = 77/336 (22%), Positives = 136/336 (40%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N D+ M +S +V + KY + + W P EV + D ++
Sbjct: 8 QNKNNQLDEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
GL D E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 GLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS--------FTTGTKDADQE 184
+II ++ D +F+ I ++A Y L + T
Sbjct: 125 HIIRNIVNDPAIVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGEGTHQVNGKSIT 184
Query: 185 FLQDLFVFYVVF--------EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 INLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + +E +Q+ + A E +A G +GLN
Sbjct: 245 GTQHMLNLLRSGEDDPEMAEIARESRQECYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R H +GL+ FK NP PW++ +
Sbjct: 305 LCQYIEYITNIRMHAVGLDLPFKTRSNPIPWINSWL 340
>gi|261496013|ref|ZP_05992423.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|261308263|gb|EEY09556.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
haemolytica serotype A2 str. OVINE]
Length = 325
Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats.
Identities = 66/320 (20%), Positives = 130/320 (40%), Gaps = 19/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
+ P +Y E + +++W+ TE D+ +++ + D ER ++ R + +
Sbjct: 9 RLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYRTT--INDHERHVLTRAMLAIS 66
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +YR+ PE A E H + +++ LGL+ E+F+
Sbjct: 67 QVEVNV-KRFWGELYRYFPKPEMDDVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIH 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E+ + + + + + EF+ L +F + E + + F ++S
Sbjct: 124 EIEPLMNRIRYMESFMKD---------KDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMS 174
Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N GI+ + ++E +H FGI + ++ E+ L+T EF + +T+ ++A
Sbjct: 175 FNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAF 234
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
E +G + + + E Y++ N +GLEP W
Sbjct: 235 EAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLEPPHDIDPEFLKETEWFDI 294
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
I KE +FF R T+Y +
Sbjct: 295 EILSTKETDFFNKRSTDYSK 314
>gi|269794349|ref|YP_003313804.1| ribonucleoside-diphosphate reductase class Ib subunit beta
[Sanguibacter keddieii DSM 10542]
gi|269096534|gb|ACZ20970.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Sanguibacter keddieii DSM 10542]
Length = 325
Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 16 NWNRVEDEKDSEVWD---RLTGNFWLPEKVPVSNDIQSWAT---LTPVEKELTTRVFTGL 69
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L + + F
Sbjct: 70 TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLISTQEIDDAFR 129
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L+Y S V + E FY+GF
Sbjct: 130 WSEENANLQRKAEIVLEYYHGDS---------------PLKRKVASTLLESFLFYSGFYL 174
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + E + + +L E
Sbjct: 175 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKLSPAERDEMKAYTFELLFE 234
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 235 LYENEVQYTADLYDG--VGLT-EDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 291
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324
>gi|238788616|ref|ZP_04632408.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
frederiksenii ATCC 33641]
gi|238723211|gb|EEQ14859.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
frederiksenii ATCC 33641]
Length = 383
Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats.
Identities = 66/337 (19%), Positives = 130/337 (38%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M + +V + K+ + + W P E+ + D ++
Sbjct: 15 QNKNNQLLEPMFFGQPVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDYQ--- 71
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 72 NLPEHEKHIFISNLKYQTLLDSIQGRSPNIALLPIISIPELETWVETWSFSETIHSRSYT 131
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L +
Sbjct: 132 HIIRNIVNDPAIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVV 191
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 192 VNLRELKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 250
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ E ++ + ++ A E +A G +GLN
Sbjct: 251 TGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKE 310
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F NP PW++ +
Sbjct: 311 ILCQYVEYITNIRMQAVGLGIPFNTRTNPIPWINSWL 347
>gi|323497713|ref|ZP_08102728.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
sinaloensis DSM 21326]
gi|323317189|gb|EGA70185.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
sinaloensis DSM 21326]
Length = 377
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 76/341 (22%), Positives = 134/341 (39%), Gaps = 28/341 (8%)
Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
K+ + + M +S +V + K+ + + W P EV + D + N
Sbjct: 9 KKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NK 65
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +
Sbjct: 66 LPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRSYTH 125
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-----------------T 176
II ++ D G +F+ E I +A Y L +
Sbjct: 126 IIRNIVNDPGIVFDDIVENEHILKRAEDISHYYDDLIQLTNDYHRYGEGTHTINGEEVSI 185
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
D ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 186 KLHDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ +E +Q+ + EA E +A G +GLN
Sbjct: 245 GTQHMINLLRNGQDDFSFMQIAEECKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL + T NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLGAAYPEATSNPIPWINAWLSSDN 345
>gi|153835812|ref|ZP_01988479.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio harveyi
HY01]
gi|148867435|gb|EDL66832.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio harveyi
HY01]
Length = 377
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 72/341 (21%), Positives = 133/341 (39%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + K+ + + W P EV + D + N
Sbjct: 8 QNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFV 191
+II ++ D +F+ E I +A Y L + + + +
Sbjct: 125 HIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHVLNGETVK 184
Query: 192 FYVV---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 185 VSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLN 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ +E +Q+ + EA E +A G +GLN
Sbjct: 245 GTQHMINLLRNGQDDFSFMQIAEEAKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL + T NP PW++ +
Sbjct: 305 LSQYVEYITNIRMQAVGLPAAYPEATSNPIPWINAWLSSDN 345
>gi|148978906|ref|ZP_01815226.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales
bacterium SWAT-3]
gi|145962104|gb|EDK27390.1| ribonucleotide-diphosphate reductase beta subunit [Vibrionales
bacterium SWAT-3]
Length = 377
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 75/342 (21%), Positives = 134/342 (39%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M +S +V + K+ + + W P EV + D + N
Sbjct: 8 QKKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D G +F+ E I +A Y L
Sbjct: 125 HIIRNIVNDPGLVFDDIVENEEILKRAKDIAFYYDDLIKLTADYHRYGEGNHNINGEDVK 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
D ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 ISLHDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+IN ++ +E +Q+ + EA E +A G +GLN
Sbjct: 244 TGTQHMINLLRNGQDDFAFMQIAEECKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL + T NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLGTAYPEATSNPIPWINAWLSSDN 345
>gi|84386981|ref|ZP_00990005.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
splendidus 12B01]
gi|86148466|ref|ZP_01066756.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
MED222]
gi|218709927|ref|YP_002417548.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
splendidus LGP32]
gi|84378271|gb|EAP95130.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
splendidus 12B01]
gi|85833763|gb|EAQ51931.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
MED222]
gi|218322946|emb|CAV19123.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
splendidus LGP32]
Length = 377
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/341 (21%), Positives = 133/341 (39%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+++ + + M +S +V + K+ + + W P EV + D + N
Sbjct: 8 QQKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP----------SFTTGTKDAD 182
+II ++ D G +F+ E I +A Y L + +D
Sbjct: 125 HIIRNIVNDPGVVFDDIVENEEILKRAKDIAFYYDDLIKLTADYHRYGEGNHNINGEDVK 184
Query: 183 QEFL------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 ISLHDLKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ +E +Q+ + EA E +A G +GLN
Sbjct: 245 GTQHMINLLRNGQDDFEFMQIAEECKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL + T NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLGTAYPEATSNPIPWINAWLSSDN 345
>gi|42565480|gb|AAS21007.1| ribonucleoside-diphosphate reductase R2 [Hyacinthus orientalis]
Length = 197
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 54/211 (25%), Positives = 82/211 (38%), Gaps = 20/211 (9%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
V ++ +L D + P+KY WE Y A + W EV + D W+
Sbjct: 1 MPSVPSAVAEEPLLAPNPDRFCMFPIKYPEIWEMYKKAEASFWTAEEVDLSQDTRHWE-- 58
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
LT DER I L FFA+S+ +V N+ + + E R + Q E +HS +
Sbjct: 59 -ALTADERHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMY 117
Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
++ S D E LF+ +P + KA WAL++ S
Sbjct: 118 SLLLESYIKDPDEKNRLFHAIETIPCVAKKAEWALRWIDGGKS--------------FAQ 163
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
V + EG++F I L + M G
Sbjct: 164 RVVAFACVEGIFFSGVSCSIFWLKKRGLMPG 194
>gi|332162349|ref|YP_004298926.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|318606422|emb|CBY27920.1| ribonucleotide reductase of class Ia (aerobic),beta subunit
[Yersinia enterocolitica subsp. palearctica Y11]
gi|325666579|gb|ADZ43223.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330864218|emb|CBX74276.1| ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
enterocolitica W22703]
Length = 376
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 69/337 (20%), Positives = 131/337 (38%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M +S +V + K+ + + W P E+ + D + N
Sbjct: 8 QNKNNQLLEPMFFGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVV 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRELKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ E ++ + ++ A E +A G +GLN
Sbjct: 244 TGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKE 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLGVPFNTRTNPIPWINSWL 340
>gi|307104534|gb|EFN52787.1| hypothetical protein CHLNCDRAFT_10712 [Chlorella variabilis]
Length = 214
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 20/225 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ +L A ++ LLP+KY +E Y A ++W EV + D+ W+ LTDDER
Sbjct: 1 KEPILQANNERFCLLPVKYDRCFEYYKQAQASYWTAEEVDLSQDMRDWR---KLTDDERH 57
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ L FFA+S+ +V N+ + + PE R + Q+ EAVHS + ++
Sbjct: 58 FVSYVLAFFAASDGIVLENLSTRFMQEVQIPEARAFYAFQSAIEAVHSEMYGLLLEQYIR 117
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D E LF+ +P + KA WA+++ ++ + V Y E
Sbjct: 118 DPDERDLLFHAVDTIPCVQKKAQWAMKWIES--------------SSCFAERLVAYACVE 163
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
G+ F F I L + M G+ + I RDE LH +F +
Sbjct: 164 GIHFSGSFCSIFWLKKRQLMPGLTFSNEMISRDEGLHTDFACHLY 208
>gi|294637129|ref|ZP_06715438.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella
tarda ATCC 23685]
gi|291089663|gb|EFE22224.1| ribonucleoside-diphosphate reductase, beta subunit [Edwardsiella
tarda ATCC 23685]
Length = 376
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/337 (20%), Positives = 130/337 (38%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + K+ + + W P EV + D ++
Sbjct: 8 QNKNDQLLEPMFFGQPVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVTDPSVVFDDIVSNEEILKRARDISVYYDDLIESTGYYHLLGEGTHQVNGKTVI 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+D ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRDLKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ E + + + +A E +A G +GLN
Sbjct: 244 TGTQHILNLMRSGQDDPEMAEIAAECETQCYDLFVQAAQQEKDWASYLFRDGSMIGLNRD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLSLPFETRSNPIPWINAWL 340
>gi|319760602|ref|YP_004124540.1| ribonucleoside-diphosphate reductase 1 subunit beta [Candidatus
Blochmannia vafer str. BVAF]
gi|318039316|gb|ADV33866.1| ribonucleoside-diphosphate reductase 1 subunit beta [Candidatus
Blochmannia vafer str. BVAF]
Length = 376
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 71/335 (21%), Positives = 133/335 (39%), Gaps = 25/335 (7%)
Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
K+ N + M + ++ + K+ + + W P E+ + D ++S
Sbjct: 9 KKNNQLLEPMFLGQPVNIVRFDQQKHIIFEKLIEKQLSFFWRPEEIDISKDRIDYQS--- 65
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +
Sbjct: 66 LPDHEKHIFISNLKYQTLLDSIQGRSPNIALLPLISIPELETWVETWSFFETIHSRSYTH 125
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQEFLQDLFVF 192
II ++ +F+ I +A Y L ++ +++
Sbjct: 126 IIRNIVTHPSSVFDDIVTNKEILKRAKDISIYYDDLIKLTNYYHILGPGIHTINKNIVAV 185
Query: 193 YV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
+ V E + FY FA + M G A+ ++I RDESLHL+
Sbjct: 186 NLHELKKKLYLCLISINVLEAIRFYVSFACSFAFAERKLMEGNAKIIRFIARDESLHLSA 245
Query: 238 GIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
++N ++ E +Q +S + A E +AH G +GLN
Sbjct: 246 TQHILNLMQSGADDPEMAEISLMYQSESYNLFLMAAEQEKMWAHYLFKDGSMIGLNKEIL 305
Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R IGL+ F N PW++ +
Sbjct: 306 CQYIEYITNIRMQAIGLKAPFHIKANVIPWINSWL 340
>gi|325675841|ref|ZP_08155525.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
ATCC 33707]
gi|325553812|gb|EGD23490.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
ATCC 33707]
Length = 335
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 64/330 (19%), Positives = 125/330 (37%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P +VP+ +D+ W + LT +E+ + R
Sbjct: 26 NWNRVPDEKDSEVWD---RLTGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGL 79
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P L AF E+VH+ ++ I ++L + F
Sbjct: 80 TLLDTIQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFR 139
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA L Y + V + E FY+GF
Sbjct: 140 WSEENPNLQRKAQIVLDYYKGDD---------------PLKRKVASTLLESFLFYSGFYL 184
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 185 PMYWASRAKLTNTADVIRLIIRDEAVHGYYIGYKYQRGLERVTEAEREELKNYTFELLFE 244
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 245 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 301
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 302 LSPNADENHDFFSGSGSSYVIGKAVNTEDD 331
>gi|21959884|gb|AAM86526.1|AE013899_3 ribonucleoside-diphosphate reductase 1, beta subunit, B2 [Yersinia
pestis KIM 10]
gi|45435621|gb|AAS61179.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
biovar Microtus str. 91001]
Length = 391
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 70/337 (20%), Positives = 132/337 (39%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M +S +V + K+ + + W P E+ + D + N
Sbjct: 23 QNKNNQLLEPMFFGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 79
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 80 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 139
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L +
Sbjct: 140 HIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVV 199
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+D ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 200 VKLRDLKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 258
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAP 290
++N +++ E ++ + ++ A E +A G +GLN
Sbjct: 259 TGTQHILNLMRLGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKE 318
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F NP PW++ +
Sbjct: 319 ILCQYVEYITNIRMQAVGLGIPFSTRTNPIPWINSWL 355
>gi|156975012|ref|YP_001445919.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio harveyi
ATCC BAA-1116]
gi|156526606|gb|ABU71692.1| hypothetical protein VIBHAR_02734 [Vibrio harveyi ATCC BAA-1116]
Length = 377
Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/341 (21%), Positives = 133/341 (39%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + K+ + + W P EV + D + N
Sbjct: 8 QNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFV 191
+II ++ D +F+ E I +A Y L + + + +
Sbjct: 125 HIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHVLNGETVK 184
Query: 192 FYVV---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 185 VSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLN 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ +E +Q+ + EA E +A G +GLN
Sbjct: 245 GTQHMINLLRNGQDDFLFMQIAEEEKQECFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL + T NP PW++ +
Sbjct: 305 LSQYVEYITNIRMQAVGLPAAYPEATSNPIPWINAWLSSDN 345
>gi|260778827|ref|ZP_05887719.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
coralliilyticus ATCC BAA-450]
gi|260604991|gb|EEX31286.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
coralliilyticus ATCC BAA-450]
Length = 377
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/340 (21%), Positives = 133/340 (39%), Gaps = 26/340 (7%)
Query: 15 KRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+ + + M +S +V + K+ + + W P EV + D + N
Sbjct: 9 NKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---NK 65
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++ +
Sbjct: 66 LPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPEVETWIETWSFSETIHSRSYTH 125
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------SPSFTTGTKDADQ 183
II ++ D G +F+ E I +A Y L + T +D
Sbjct: 126 IIRNIVNDPGLVFDDIVENEHILKRAEDISHYYDDLIQMTNDYHRYGEGTHTINGEDVKI 185
Query: 184 EFL------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 186 SLHELKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTG 245
Query: 238 GIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
+IN ++ +E +Q+ + +A E +A G +GLN
Sbjct: 246 TQHMINLLRNGQDDFSFMQIAEECKQECFDLFKDAAEQEKEWAEYLFKDGSMIGLNKDIL 305
Query: 293 EQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL+ + T NP PW++ +
Sbjct: 306 CQYVEYITNIRMQAVGLDAAYPEATSNPIPWINAWLSSDN 345
>gi|116670901|ref|YP_831834.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter sp.
FB24]
gi|116611010|gb|ABK03734.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Arthrobacter sp. FB24]
Length = 324
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/336 (19%), Positives = 126/336 (37%), Gaps = 34/336 (10%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ K W NN W+P +VP+ +D+ W + LT DE+ + R
Sbjct: 12 EAINWNRIQDDKDVDVWN---RLVNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVF 65
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
+++ +++ P AF E+VH+ ++ I ++L + E
Sbjct: 66 TGLTLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDE 125
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
F E ++ KA + Y Q V + E FY+G
Sbjct: 126 AFRWSTENANLQKKAQIVMDYYQGDD---------------PLKRKVASTLLESFLFYSG 170
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F + K+ A+ + I+RDE++H + + + +E + + +
Sbjct: 171 FYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEEKRQEIKDYTFEL 230
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFP 321
L E E+ Y H+ VGL A ++++ + AN+ +G E +F NP
Sbjct: 231 LFELYENEVQYTHDLY--DSVGL-AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAI 287
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + + +FF + Y G + WD
Sbjct: 288 LSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323
>gi|156564205|ref|YP_001429715.1| nrd beta subunit [Bacillus phage 0305phi8-36]
gi|154622902|gb|ABS83782.1| nrd beta subunit [Bacillus phage 0305phi8-36]
Length = 352
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 78/311 (25%), Positives = 139/311 (44%), Gaps = 18/311 (5%)
Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
++ + N W P E+ M++D +W + LT E+ R A +SL +L
Sbjct: 48 YDISQTLEANFWRPVEIKMKEDEKMW---DSLTPIEQDTFLRVGTALACLDSLQVK-AIL 103
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKAN 160
+ R +N A +EA H+ ++ YI +SL + + FN + P + +
Sbjct: 104 EVIRFTTNSALANISAFIAQQEATHTTSYSYITSSLVRLPVQNQYFNETMKHPVLAKRNK 163
Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
L + + ++ + L + V + EG++FY+GFA L KM+
Sbjct: 164 LVLDVYEDFA--------ENPSLQNLFRMLVQSINLEGIYFYSGFAFFYWLASQQKMMKS 215
Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
+ YI RDE H F +I ++ ENP L T+E Q L EA E +A E +
Sbjct: 216 STMISYIQRDEMQHAYFIGLLIRRLLTENPELNTQENAQYIVDSLKEAVATEKEWAGEIL 275
Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW---MSEVIDLKKEKNFFE 337
GL+ + Y++++AN+R Q+G++ +++ NP PW S+ + + + FE
Sbjct: 276 -ADIEGLDLEEFDHYIEYLANKRVRQLGMDNIYEERGNPMPWIQVFSDEMMEHTKTDQFE 334
Query: 338 TRVTEYQQGAE 348
+ +Y +
Sbjct: 335 NKSRDYSGATK 345
>gi|328474726|gb|EGF45531.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
parahaemolyticus 10329]
Length = 377
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/341 (21%), Positives = 132/341 (38%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + K+ + + W P EV + D + N
Sbjct: 8 QNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFV 191
+II ++ D +F+ E I +A Y L + + + +
Sbjct: 125 HIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQTTNDYHRYGEGEHVINGETVK 184
Query: 192 FYVV---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 185 ISLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLN 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ +E +Q + EA E +A G +GLN
Sbjct: 245 GTQHMINLLRNGQDDFSFMQIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL + T NP PW++ +
Sbjct: 305 LSQYVEYITNIRMQAVGLPAAYPEATTNPIPWINAWLSSDN 345
>gi|123441721|ref|YP_001005705.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|122088682|emb|CAL11484.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia
enterocolitica subsp. enterocolitica 8081]
Length = 376
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 69/337 (20%), Positives = 131/337 (38%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M +S +V + K+ + + W P E+ + D + N
Sbjct: 8 QNKNNQLLEPMFFGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVV 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRELKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ E ++ + ++ A E +A G +GLN
Sbjct: 244 TGTQHILNLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKE 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLGIPFNTRTNPIPWINSWL 340
>gi|259907948|ref|YP_002648304.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia
pyrifoliae Ep1/96]
gi|224963570|emb|CAX55060.1| Ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
pyrifoliae Ep1/96]
gi|283477829|emb|CAY73745.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
pyrifoliae DSM 12163]
gi|310768143|gb|ADP13093.1| ribonucleotide-diphosphate reductase subunit beta [Erwinia sp.
Ejp617]
Length = 376
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/336 (21%), Positives = 135/336 (40%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLLEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I ++A Y L + T
Sbjct: 125 HIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGEGTHQVNGKTVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRALKKQLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ E ++ R ++ A E +A G +GLN
Sbjct: 245 GTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQEKEWAEYLFSGGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R + +GL+ FK NP PW++ +
Sbjct: 305 LCQYIEYITNIRMNAVGLDLPFKTRSNPIPWINSWL 340
>gi|91227184|ref|ZP_01261643.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
alginolyticus 12G01]
gi|262393879|ref|YP_003285733.1| ribonucleotide reductase of class Ia (aerobic) subunit beta [Vibrio
sp. Ex25]
gi|269967067|ref|ZP_06181135.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
alginolyticus 40B]
gi|91188712|gb|EAS75000.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
alginolyticus 12G01]
gi|262337473|gb|ACY51268.1| ribonucleotide reductase of class Ia (aerobic) beta subunit [Vibrio
sp. Ex25]
gi|269828326|gb|EEZ82592.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio
alginolyticus 40B]
Length = 377
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 74/341 (21%), Positives = 133/341 (39%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M +S +V + K+ + + W P EV + D + N
Sbjct: 8 QKKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFV 191
+II ++ D +F+ E I +A Y L + + + +
Sbjct: 125 HIIRNIVNDPAVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHVLNGETVK 184
Query: 192 FYVV---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 185 VSLYDLKKKLYICLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLN 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ +E +Q + EA E +A G +GLN
Sbjct: 245 GTQHMINLLRNGQDDFTFMQIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL + T NP PW++ +
Sbjct: 305 LSQYVEYITNIRMQAVGLPAAYPEATTNPIPWINAWLSSDN 345
>gi|167623961|ref|YP_001674255.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
halifaxensis HAW-EB4]
gi|167353983|gb|ABZ76596.1| Ribonucleoside-diphosphate reductase [Shewanella halifaxensis
HAW-EB4]
Length = 376
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 69/312 (22%), Positives = 125/312 (40%), Gaps = 26/312 (8%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
KY + + W P EV + D + L + E+ + NL + +S+
Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---AALPEHEKHIFISNLKYQTLLDSIQG 89
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+ +A +S PE ++ +F E +HS ++ +II ++ D +F+ E I
Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILK 149
Query: 158 KANWALQYTQTLSSPS-----------------FTTGTKDADQEFLQDLFVFYVVFEGMW 200
+A+ +Y L S T++ + + V+ E +
Sbjct: 150 RASDIAKYYDHLIKLSQAYHLLGEGSHEIDGEIIEVTTREIKKALYLCMVSVNVL-EAIR 208
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKE 256
FY FA + M G A+ + I RDE+LHLN ++ ++ ++P + KE
Sbjct: 209 FYVSFACSFAFAERKVMEGNAKIIRLIARDEALHLNSTQHILKIMQGGKDDPEMAEIAKE 268
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+Q + + +A E +A G +GLN QY+++I N R + +
Sbjct: 269 CEQTAIDIFVKAAEQEKEWAKYLFKDGSMIGLNETILCQYVEYITNERMKSVNFASPYAE 328
Query: 316 TENPFPWMSEVI 327
NP PWM +
Sbjct: 329 QTNPLPWMKNWL 340
>gi|108798796|ref|YP_638993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
sp. MCS]
gi|119867913|ref|YP_937865.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
sp. KMS]
gi|126434397|ref|YP_001070088.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
sp. JLS]
gi|108769215|gb|ABG07937.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Mycobacterium sp. MCS]
gi|119694002|gb|ABL91075.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Mycobacterium sp. KMS]
gi|126234197|gb|ABN97597.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Mycobacterium sp. JLS]
Length = 320
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 11 NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 64
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L + F
Sbjct: 65 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 124
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA +QY + V + E FY+GF
Sbjct: 125 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + E + + +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALQDPATQAELKDYTYELLFE 229
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 230 LYDNEVEYTQDLY--DSVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 319
>gi|325963521|ref|YP_004241427.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Arthrobacter phenanthrenivorans Sphe3]
gi|323469608|gb|ADX73293.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Arthrobacter phenanthrenivorans Sphe3]
Length = 324
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/336 (19%), Positives = 124/336 (36%), Gaps = 34/336 (10%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ K W NN W+P +VP+ +D+ W + LT E+ + R
Sbjct: 12 EAINWNRIQDDKDVDVWN---RLVNNFWLPEKVPLSNDVQSWNT---LTPAEQQLTMRVF 65
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
+++ +++ P AF E+VH+ ++ I ++L + E
Sbjct: 66 TGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDE 125
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
F E ++ KA + Y Q V + E FY+G
Sbjct: 126 AFRWSTENENLQKKAQIVMDYYQGDD---------------PLKRKVASTLLESFLFYSG 170
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F + K+ A+ + I+RDE++H + + +E + + +
Sbjct: 171 FYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLEAVSPERRQEIKDYTFEL 230
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFP 321
L E E+ Y H+ VGL A ++++ + AN+ +G E +F NP
Sbjct: 231 LFELYENEVQYTHDLYDG--VGL-AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAI 287
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + + +FF + Y G + WD
Sbjct: 288 LSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323
>gi|119961248|ref|YP_948075.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter
aurescens TC1]
gi|119948107|gb|ABM07018.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter
aurescens TC1]
Length = 324
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 62/323 (19%), Positives = 122/323 (37%), Gaps = 26/323 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + NN W+P +VP+ +D+ W + LT DE+ + R
Sbjct: 15 NWNKIQDDKDVEVWNRLVNNFWLPEKVPLSNDVQSWHT---LTPDEQQLTMRVFTGLTLL 71
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ +++ P AF E+VH+ ++ I ++L + + F
Sbjct: 72 DTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDDAFRWSL 131
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ KA + Y Q V + E FY+GF +
Sbjct: 132 ENENLQKKAQIVMDYYQGDD---------------PLKRKVASTLLESFLFYSGFYLPMY 176
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 177 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEARKQEIKDYTFELLFELYE 236
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+ Y H+ VGL A ++++ + AN+ +G E +F NP +
Sbjct: 237 NEVQYTHDLYDG--VGL-AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAILSALSP 293
Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G +
Sbjct: 294 NADENHDFFSGSGSSYVIGKAVN 316
>gi|254489413|ref|ZP_05102616.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp.
GAI101]
gi|214041920|gb|EEB82560.1| ribonucleoside-diphosphate reductase, beta subunit [Roseobacter sp.
GAI101]
Length = 324
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ W + L DER + R L
Sbjct: 15 NWNRIQDDKDLEVWN---RLTVNFWLPEKVPLSNDVQSWAT---LKPDERTLTIRVLTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ ++ P L AF EAVH+ ++ I ++L + + F
Sbjct: 69 TLLDTIQNTVGAPSLMPDAQTPHEEAVLTNIAFMEAVHARSYSSIFSTLCSTKEVDDAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ P + AK+ LQ + P + V E FY+GF
Sbjct: 129 WSEDNPHLQAKSRLILQEYNATADP--------------LKRKIASVFLESFLFYSGFYL 174
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + P + + +++ +
Sbjct: 175 PMYWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQRATEQLPQADRDALKDFAFSLMFD 234
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
+E Y E +GL + ++ + AN+ +G E LF NP ++
Sbjct: 235 LYEIEAHYTAELYDD--LGLT-EDVKAFLHYNANKALQNLGYEALFPAQVCEVNP-AILA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 ALSPDSENHDFFSGSGSSYVIGKAVATEDEDWD 323
>gi|294505968|ref|YP_003570026.1| Ribonucleoside-diphosphate reductase beta subunit [Salinibacter
ruber M8]
gi|294342296|emb|CBH23074.1| Ribonucleoside-diphosphate reductase beta subunit [Salinibacter
ruber M8]
Length = 324
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 68/323 (21%), Positives = 131/323 (40%), Gaps = 18/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
L P +Y E + ++W+ E + D+ ++ TD ER +IK+ + A
Sbjct: 7 RVNLKPYEYPHLLEFKTAIRQSYWVHDEFSFEGDVQDFR--VNCTDAERSVIKKTMLAIA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E IY L PE + A E H + +++ LGL++ F
Sbjct: 65 QVEV-AVKTFWADIYDRLPVPEVGAVGMTFAESEVRHLDAYSHLLELLGLND--AFERIE 121
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E+P++ + + + + ++ F + +F + E + ++ F +LS
Sbjct: 122 EIPALIDRVEY--------LNSALEGTGSRDERAFAHSILLFSIFIEHVSLFSQFLIMLS 173
Query: 211 LGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ K G+A + ++E +H FG++++N I+ E+P + F+Q+ R EA
Sbjct: 174 FDKHEKRFKGVANAVEATSKEEQIHGLFGVELMNIIREEHPEWFGPAFEQEVRAACEEAY 233
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
E G + L P + +++ N + ++P+F+ W E
Sbjct: 234 DAEQKVLDWIFADGELDFLPRPVVDAFLRDKFNESLKNVDVDPIFEVDPEHLGETRWFYE 293
Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
I L K +FF R T Y + +
Sbjct: 294 EILLTKGNDFFSKRSTSYSKMTQ 316
>gi|33152746|ref|NP_874099.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
ducreyi 35000HP]
gi|33148970|gb|AAP96488.1| ribonucleoside-diphosphate reductase, beta chain [Haemophilus
ducreyi 35000HP]
Length = 376
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 72/336 (21%), Positives = 125/336 (37%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D ++
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A +S PE ++ F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG--------------- 177
+II ++ D +F+ I +A Y L S
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRARDISCYYDDLIRDSQLYTLYGEGTYQVDGKACA 184
Query: 178 -TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
T + L + V E + FY FA + M G A+ ++I RDE LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNVLEAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLHLA 244
Query: 237 FGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N I E QQ++ + A E +A G +GLN
Sbjct: 245 GTQQMLNIIASGQDDPEMAEIAIECQQEAYDLFVAAAEQEKEWAEYLFKDGSMIGLNKEI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+Y+++I N R +GL F NP PW++ +
Sbjct: 305 LVKYVEYITNIRMQSVGLPLPFATQSNPIPWINAWL 340
>gi|222475861|ref|YP_002564382.1| ribonucleotide reductase [Halorubrum lacusprofundi ATCC 49239]
gi|222454232|gb|ACM58496.1| ribonucleotide reductase [Halorubrum lacusprofundi ATCC 49239]
Length = 336
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 68/323 (21%), Positives = 133/323 (41%), Gaps = 18/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
QL P +Y + + N++W+ TE D+ +K T E+ +IKR + A
Sbjct: 19 RTQLKPYEYNDFLDYKDAIRNSYWVHTEFNFSGDVQDFKVNT--TPAEKTVIKRTMLAIA 76
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E IY + E + A E H + +++ LG+ F
Sbjct: 77 QIEV-QVKTFWSDIYEEMPKAEIGSVGMTFAESEVRHMDAYSHLLDVLGITGD--FEEVT 133
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
EVP++ + + G D + ++ + +F + E + ++ F + S
Sbjct: 134 EVPAVKDRIEY--------LDECLERGQSDDTKGYVMSILLFSMFVEHVSLFSQFLIMTS 185
Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ K GIA + ++E +H FG+++++ I+ ENP L+ EF+ + R A
Sbjct: 186 FDKYEKKFKGIANAVEATSKEEQIHGLFGVELVDTIREENPGLFDDEFEAEIREACRRAY 245
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
E+ +G + L ++++ N+ +G+ P+F+ ++ W E
Sbjct: 246 EAEMGMLDWIFGEGELQFLPREYVNEFLKDRFNQSLENVGVYPMFETDDDLLDETRWFDE 305
Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
I + K+ +FF R T Y + +
Sbjct: 306 DIMMTKDNDFFSKRSTTYNKHTQ 328
>gi|170726650|ref|YP_001760676.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
woodyi ATCC 51908]
gi|169811997|gb|ACA86581.1| Ribonucleoside-diphosphate reductase [Shewanella woodyi ATCC 51908]
Length = 376
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 75/311 (24%), Positives = 127/311 (40%), Gaps = 24/311 (7%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
KY + + W P EV + D + L D E+ + NL + +S+
Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSKDKIDY---AALPDHEKHIFISNLKYQTLLDSIQG 89
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+ +A +S PE ++ +F E +HS ++ +II ++ D +F+ E I
Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFDDIVENEEILK 149
Query: 158 KANWALQYTQTLS----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
+A+ +Y TL TK ++ L + V E + F
Sbjct: 150 RASDIAEYYDTLIKLTQAFHLLGEGTHMIDGRELIVTKREIKKALYLCMMSVNVLEAIRF 209
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEF 257
Y FA + M G A+ + I RDE+LHLN +I Q ++P + KE
Sbjct: 210 YVSFACSFAFAERKVMEGNAKIIRLIARDEALHLNSTQHIIKLMQAGKDDPEMGEIAKEC 269
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+Q++ + +A E +A G +GLN QY+++I N R + L+ +
Sbjct: 270 EQQAYDIFVKAAEQEKEWARYLFKDGSMIGLNEQILCQYVEYITNERMKSVNLDLPYAQI 329
Query: 317 ENPFPWMSEVI 327
NP PWM +
Sbjct: 330 TNPLPWMKTWL 340
>gi|28898709|ref|NP_798314.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
parahaemolyticus RIMD 2210633]
gi|153839553|ref|ZP_01992220.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
parahaemolyticus AQ3810]
gi|260363692|ref|ZP_05776476.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
parahaemolyticus K5030]
gi|260879741|ref|ZP_05892096.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
parahaemolyticus AN-5034]
gi|260898785|ref|ZP_05907226.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
parahaemolyticus Peru-466]
gi|260901598|ref|ZP_05909993.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
parahaemolyticus AQ4037]
gi|28806927|dbj|BAC60198.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
parahaemolyticus RIMD 2210633]
gi|149746934|gb|EDM57922.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
parahaemolyticus AQ3810]
gi|308086689|gb|EFO36384.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
parahaemolyticus Peru-466]
gi|308093260|gb|EFO42955.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
parahaemolyticus AN-5034]
gi|308108691|gb|EFO46231.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
parahaemolyticus AQ4037]
gi|308113401|gb|EFO50941.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
parahaemolyticus K5030]
Length = 377
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 75/342 (21%), Positives = 134/342 (39%), Gaps = 28/342 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + K+ + + W P EV + D + N
Sbjct: 8 QNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT-----------------LSSPSFT 175
+II ++ D +F+ E I +A Y L+ +
Sbjct: 125 HIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQTTNDYHRYGEGEHVLNGETVK 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
D ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLYDLKKKLYICLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
N +IN ++ +E +Q + EA E +A G +GLN
Sbjct: 244 NGTQHMINLLRNGQDDFSFMQIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL + T NP PW++ +
Sbjct: 304 ILSQYVEYITNIRMQAVGLPAAYPEATTNPIPWINAWLSSDN 345
>gi|212712302|ref|ZP_03320430.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM
30120]
gi|212685048|gb|EEB44576.1| hypothetical protein PROVALCAL_03388 [Providencia alcalifaciens DSM
30120]
Length = 380
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/336 (21%), Positives = 134/336 (39%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ N + M + +V + KY + + W P EV + D + N
Sbjct: 12 QKKNNQLLEPMFFGQPVNVARFDQQKYPIFEKLIEKQLSFFWRPEEVDVARDRIDY---N 68
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 69 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLISIPELETWVETWSFSETIHSRSYT 128
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSP-SFTTGTKDADQEFL----- 186
+II ++ D +F+ E I +A Y TL ++ + F
Sbjct: 129 HIIRNIVNDPAIIFDDIVENEEILKRARDISAYYDTLIEMTNYYHMFGEGTHTFEGKEIT 188
Query: 187 ----------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 189 VSLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 248
Query: 237 FGIDVIN--QIKIENPHLWTKEFQQKS--RTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N + ++P + + + + +A E +A +G +GLN
Sbjct: 249 GTQHMLNLLRSGQDDPEMAEIAAECEEECYRLFVDAAEQEKEWAEYLFSEGSMIGLNKDI 308
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 309 LCQYVEYITNIRMQAVGLKLPFEARSNPIPWINAWL 344
>gi|312962626|ref|ZP_07777115.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens WH6]
gi|311283001|gb|EFQ61593.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudomonas
fluorescens WH6]
Length = 136
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 88/136 (64%), Positives = 108/136 (79%)
Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
M G+AEQ+QYI+RDES+HLNFGIDVINQIKIENPHLW E ++++ M+ + T LEI YA
Sbjct: 1 MTGVAEQFQYILRDESMHLNFGIDVINQIKIENPHLWDAEMKEEATQMILQGTQLEIEYA 60
Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336
+TMP+G +G+NA E Y++FIANRR QIGL+ + T NPFPWMSE++DLKKEKNFF
Sbjct: 61 RDTMPRGVLGMNAAMMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFF 120
Query: 337 ETRVTEYQQGAELKWD 352
ETRV EYQ G L WD
Sbjct: 121 ETRVIEYQTGGALSWD 136
>gi|126174279|ref|YP_001050428.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
baltica OS155]
gi|125997484|gb|ABN61559.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Shewanella baltica OS155]
Length = 376
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 75/336 (22%), Positives = 131/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + M +S +V + KY + + W P EV + D +
Sbjct: 8 QTPNDATREPMFLGQSVNVARYDQQKYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---G 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A +S PE ++ +F E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEF 185
+II ++ D +F+ I ++A Y L + T D +
Sbjct: 125 HIIRNIVNDPSVIFDDIVVNKEILSRATDIAAYYDHLIQLTQVFHLLGAGTHVIDGKEVI 184
Query: 186 L---------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ + E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 185 VNTRTLKKALYLCMMSVNALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLN 244
Query: 237 FGIDV--INQIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+ I Q ++P + E QQ++ + +A E +A G +GLN
Sbjct: 245 STQHILSIMQGGKDDPEMGEIAAECQQEAFDLFFKAAEQEKEWAKYLFKDGSMIGLNEQI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY++FI N+R + L + NP PWM +
Sbjct: 305 LCQYVEFITNQRMKSVNLPQPYLEITNPLPWMKNWL 340
>gi|238797463|ref|ZP_04640962.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
mollaretii ATCC 43969]
gi|238718734|gb|EEQ10551.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
mollaretii ATCC 43969]
Length = 376
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 69/337 (20%), Positives = 130/337 (38%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M + +V + K+ + + W P E+ + D + N
Sbjct: 8 QNKNNQLLEPMFFGQCVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVNDPAIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGSHQVNGKTVV 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRELKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAP 290
+IN ++ E ++ + ++ A E +A G +GLN
Sbjct: 244 TGTQHIINLMRSGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKE 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLGVPFNTRTNPIPWINSWL 340
>gi|47213107|emb|CAF89527.1| unnamed protein product [Tetraodon nigroviridis]
Length = 369
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 6/149 (4%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L + P++Y W+ Y A + W EV + DL W+S L DDER
Sbjct: 1 EEPLLKENPRRFVIFPIQYQDLWQMYKKAEASFWTAEEVDLSKDLQHWES---LKDDERF 57
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 58 FISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIK 117
Query: 141 DEGE---LFNMYREVPSITAKANWALQYT 166
+ E LFN +P + KA+WAL +
Sbjct: 118 EPSEREYLFNAIETLPCVKKKADWALNWI 146
Score = 61.3 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 323 AENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVM 355
>gi|76803441|ref|YP_327710.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Natronomonas
pharaonis DSM 2160]
gi|76559256|emb|CAI50863.1| ribonucleoside-diphosphate reductase, beta subunit 1 [Natronomonas
pharaonis DSM 2160]
Length = 336
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 69/320 (21%), Positives = 138/320 (43%), Gaps = 18/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
QL P +Y + + N++W+ TE D+ +++ T E+ +IKR + A
Sbjct: 19 RTQLKPYEYADFLDYKDAIRNSYWVHTEFNFSGDVQDFRTNT--TPAEKTVIKRTMLAIA 76
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E IY + E + A E H + +++ LG+ E F
Sbjct: 77 QIEV-QVKTFWADIYDEMPKTEVGNVGMTFAESEVRHMDAYSHLLDILGIT--EDFEEVT 133
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+VP+I + + +Y + D QE++ + +F E + ++ F ++S
Sbjct: 134 DVPAIEDRIEYLDKYLEK--------SESDDKQEYVMSILLFSTFVEHVSLFSQFLIMMS 185
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ K GIA + ++E +H FG++++ I+ ENP L+ ++F+++ + A
Sbjct: 186 FDKYKKKFKGIANAVEATSKEEQIHGLFGVELVETIREENPDLFDEDFEEEVQAACQRAF 245
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
E+ +G + L + +++ N+ +G+EP+F+ + W E
Sbjct: 246 EAEMKILDWIFGEGELEFLPRTHVDAFLRDRFNQSLENVGVEPIFEPDDGLLEETRWFDE 305
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
I + K+ +FF R T Y +
Sbjct: 306 DIMMTKDNDFFSKRSTTYNK 325
>gi|51595597|ref|YP_069788.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
pseudotuberculosis IP 32953]
gi|108806924|ref|YP_650840.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
Antiqua]
gi|108812924|ref|YP_648691.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
Nepal516]
gi|145599749|ref|YP_001163825.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
Pestoides F]
gi|149366796|ref|ZP_01888830.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
CA88-4125]
gi|153950490|ref|YP_001401734.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
pseudotuberculosis IP 31758]
gi|161484771|ref|NP_670275.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
KIM 10]
gi|161511422|ref|NP_992302.2| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
biovar Microtus str. 91001]
gi|162418296|ref|YP_001605847.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
Angola]
gi|165924721|ref|ZP_02220553.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165938305|ref|ZP_02226863.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Orientalis str. IP275]
gi|166009974|ref|ZP_02230872.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166211802|ref|ZP_02237837.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167400353|ref|ZP_02305866.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167419574|ref|ZP_02311327.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167424117|ref|ZP_02315870.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167470792|ref|ZP_02335496.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
FV-1]
gi|170025073|ref|YP_001721578.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
pseudotuberculosis YPIII]
gi|186894660|ref|YP_001871772.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
pseudotuberculosis PB1/+]
gi|218928372|ref|YP_002346247.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
CO92]
gi|229841157|ref|ZP_04461316.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229843262|ref|ZP_04463408.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
biovar Orientalis str. India 195]
gi|229894122|ref|ZP_04509308.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
Pestoides A]
gi|229903354|ref|ZP_04518467.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
Nepal516]
gi|270487164|ref|ZP_06204238.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
KIM D27]
gi|294503227|ref|YP_003567289.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
Z176003]
gi|51588879|emb|CAH20493.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia
pseudotuberculosis IP 32953]
gi|108776572|gb|ABG19091.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Yersinia pestis Nepal516]
gi|108778837|gb|ABG12895.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Yersinia pestis Antiqua]
gi|115346983|emb|CAL19874.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
CO92]
gi|145211445|gb|ABP40852.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Yersinia pestis Pestoides F]
gi|149291170|gb|EDM41245.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
CA88-4125]
gi|152961985|gb|ABS49446.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia
pseudotuberculosis IP 31758]
gi|162351111|gb|ABX85059.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
Angola]
gi|165913683|gb|EDR32302.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Orientalis str. IP275]
gi|165923781|gb|EDR40913.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165991370|gb|EDR43671.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166207573|gb|EDR52053.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166962315|gb|EDR58336.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167050302|gb|EDR61710.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167056966|gb|EDR66729.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|169751607|gb|ACA69125.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis
YPIII]
gi|186697686|gb|ACC88315.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+]
gi|229679124|gb|EEO75227.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
Nepal516]
gi|229689609|gb|EEO81670.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
biovar Orientalis str. India 195]
gi|229697523|gb|EEO87570.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229704007|gb|EEO91020.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
Pestoides A]
gi|262361266|gb|ACY57987.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
D106004]
gi|262365197|gb|ACY61754.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
D182038]
gi|270335668|gb|EFA46445.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
KIM D27]
gi|294353686|gb|ADE64027.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
Z176003]
gi|320015945|gb|ADV99516.1| ribonucleoside-diphosphate reductase 1 beta chain [Yersinia pestis
biovar Medievalis str. Harbin 35]
Length = 376
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 70/337 (20%), Positives = 132/337 (39%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M +S +V + K+ + + W P E+ + D + N
Sbjct: 8 QNKNNQLLEPMFFGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVV 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+D ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VKLRDLKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAP 290
++N +++ E ++ + ++ A E +A G +GLN
Sbjct: 244 TGTQHILNLMRLGEDDPEMAEIAEECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKE 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLGIPFSTRTNPIPWINSWL 340
>gi|312140539|ref|YP_004007875.1| ribonucleoside-diphosphate reductase nrdf [Rhodococcus equi 103S]
gi|311889878|emb|CBH49195.1| ribonucleoside-diphosphate reductase NrdF [Rhodococcus equi 103S]
Length = 329
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 64/330 (19%), Positives = 125/330 (37%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P +VP+ +D+ W + LT +E+ + R
Sbjct: 20 NWNRVPDEKDSEVWD---RLTGNFWLPEKVPVSNDIQSWAT---LTPNEQQLTMRVFTGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P L AF E+VH+ ++ I ++L + F
Sbjct: 74 TLLDTIQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSQIFSTLCTTREIDDAFR 133
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA L Y + V + E FY+GF
Sbjct: 134 WSEENPNLQRKAQIVLDYYKGDD---------------PLKRKVASTLLESFLFYSGFYL 178
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 179 PMYWASRAKLTNTADVIRLIIRDEAVHGYYIGYKYQRGLERVTEAEREELKNYTFELLFE 238
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 239 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 295
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAVNTEDD 325
>gi|238751211|ref|ZP_04612705.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
rohdei ATCC 43380]
gi|238710485|gb|EEQ02709.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
rohdei ATCC 43380]
Length = 399
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 130/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M +S +V + K+ + + W P E+ + D ++
Sbjct: 31 QNKNNQLLEPMFLGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDYQ--- 87
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 88 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 147
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y L +
Sbjct: 148 HIIRNIVNDPSVVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVV 207
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 208 VNLHALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLT 267
Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ E QQ+ + A E +A G +GLN
Sbjct: 268 GTQHILNLMRSGEDDPEMAEIAVECQQQCYDLFVLAAEQEKEWAEYLFRDGSMIGLNKEI 327
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL FK NP PW++ +
Sbjct: 328 LCQYVEYITNIRMQAVGLGTPFKTRTNPIPWINSWL 363
>gi|27366311|ref|NP_761839.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
vulnificus CMCP6]
gi|37679427|ref|NP_934036.1| ribonucleotide-diphosphate reductase subunit beta [Vibrio
vulnificus YJ016]
gi|320156821|ref|YP_004189200.1| ribonucleotide reductase of class Ia (aerobic), subunit beta
[Vibrio vulnificus MO6-24/O]
gi|27362512|gb|AAO11366.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Vibrio vulnificus CMCP6]
gi|37198171|dbj|BAC94007.1| ribonucleotide reductase, beta subunit [Vibrio vulnificus YJ016]
gi|319932133|gb|ADV86997.1| ribonucleotide reductase of class Ia (aerobic), beta subunit
[Vibrio vulnificus MO6-24/O]
Length = 377
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 74/344 (21%), Positives = 132/344 (38%), Gaps = 27/344 (7%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
K + + L +V + K+ + + W P EV + D +
Sbjct: 6 FNQTKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY-- 63
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
N L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS +
Sbjct: 64 -NKLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRS 122
Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-----------------SSPS 173
+ +II ++ D +F+ E I +A Y L + +
Sbjct: 123 YTHIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQLTNDYHRFGEGEHVVNGET 182
Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
+ ++ L + E + FY FA + M G A+ + I RDE+L
Sbjct: 183 IKVSLYELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEAL 241
Query: 234 HLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
HLN +IN ++ +E +Q+ + EA E +A G +GLN
Sbjct: 242 HLNGTQHMINLLRNGQDDFSFMQIAEEAKQQCFDLFKEAAEQEKEWAEYLFKDGSMIGLN 301
Query: 289 APSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK 331
QY+++I N R +GL + T NP PW++ +
Sbjct: 302 KDILCQYVEYITNIRMQAVGLPVAYPNATSNPIPWINAWLSSDN 345
>gi|238785708|ref|ZP_04629683.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
bercovieri ATCC 43970]
gi|238713393|gb|EEQ05430.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
bercovieri ATCC 43970]
Length = 376
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 68/337 (20%), Positives = 131/337 (38%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M + +V + K+ + + W P E+ + D + N
Sbjct: 8 QNKNNQLLEPMFFGQCVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVNDPAIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGSHQVNGKTVV 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRELKKQLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAP 290
++N ++ E ++ ++ ++ A E +A G +GLN
Sbjct: 244 TGTQHILNLMRSGEDDPEMAEIAEECQSQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKE 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F NP PW++ +
Sbjct: 304 ILCQYVEYITNIRMQAVGLGVPFNTRSNPIPWINSWL 340
>gi|163842202|ref|YP_001626607.1| ribonucleotide-diphosphate reductase subunit beta [Renibacterium
salmoninarum ATCC 33209]
gi|162955678|gb|ABY25193.1| ribonucleoside-diphosphate reductase beta chain [Renibacterium
salmoninarum ATCC 33209]
Length = 325
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 66/330 (20%), Positives = 124/330 (37%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + NN W+P +VP+ +D+ W + LT DE+ + R
Sbjct: 16 NWNRIQDDKDVEVWNRLVNNFWLPEKVPLSNDVQSWAT---LTPDEQQLTMRVFTGLTLL 72
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
++L +++ P AF E+VH+ ++ I ++L + E F
Sbjct: 73 DTLQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSV 132
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ KA + Y V + E FY+GF +
Sbjct: 133 ENENLQKKAQIVMNYYTGDD---------------PLKRKVASTLLESFLFYSGFYLPMY 177
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L+E
Sbjct: 178 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVSEERREEIKAYTFDLLYELYE 237
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
EI Y H+ VGL A ++++ + AN+ +G E +F NP +
Sbjct: 238 NEIQYTHDLY--DAVGL-AEDVKKFLHYNANKALMNLGYEAMFPSTVTDVNPAILSALSP 294
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 295 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 324
>gi|289178104|gb|ADC85350.1| Ribonucleoside-diphosphate reductase beta chain [Bifidobacterium
animalis subsp. lactis BB-12]
Length = 326
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 64/328 (19%), Positives = 121/328 (36%), Gaps = 29/328 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +D+ W+ ++D E + R
Sbjct: 17 NWNRLDDEKDLEVWD---RLTGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGL 70
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L E F+
Sbjct: 71 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEAFD 130
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ P + KA L Y + V + E FY+GF
Sbjct: 131 WSEKNPHLQRKAQIVLDYYEGDD---------------PLKRKVASTLLESFLFYSGFYL 175
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + E + + +L+E
Sbjct: 176 PMYFSSHAKLTNTADVIRLIIRDEAVHGYYIGYKYQKGLEMASDAKRAEMETYTYDLLNE 235
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
E+ Y H VGL+ E+++ + AN+ +G LF NP +
Sbjct: 236 LYENEVEYTHSLY--DEVGLS-DDVEKFLHYNANKALMNLGYPALFPSEICDVNPAILAA 292
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352
+ + +FF + Y G + D
Sbjct: 293 LSPNADENHDFFSGSGSSYVMGRAEETD 320
>gi|127512873|ref|YP_001094070.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
loihica PV-4]
gi|126638168|gb|ABO23811.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Shewanella loihica PV-4]
Length = 376
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 72/330 (21%), Positives = 124/330 (37%), Gaps = 29/330 (8%)
Query: 22 KRMLNA---RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
+ M + KY + + W P EV + D + L D E
Sbjct: 16 EPMFLGQSVNVARYDIQ--KYEVFEKLIEKQLSFFWRPEEVDVSKDKIDY---AALPDHE 70
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
+ + NL + +S+ + +A +S PE ++ +F E +HS ++ +II ++
Sbjct: 71 KHIFISNLKYQTLLDSIQGRSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNI 130
Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFL----------- 186
D +F+ + I +A+ Y L S + E
Sbjct: 131 VNDPSVVFDDIVQNEEILKRASDIADYYDNLIELSQIYHLMGEGTHEINGKTVEVTTRAI 190
Query: 187 ----QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
+ V E + FY FA + M G A+ + I RDE+LHLN ++
Sbjct: 191 KKALYLCMMSVNVLEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALHLNSTQHIL 250
Query: 243 N--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQ 297
Q ++P + KE +Q + + +A E +A G +GLN QY++
Sbjct: 251 KLMQGGKDDPEMAEIAKECEQTAIDIFVKAAEQEKEWAKYLFKDGSMIGLNEQILCQYVE 310
Query: 298 FIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+I N R + L + NP PWM +
Sbjct: 311 YITNERMKSVNLVSPYADQSNPLPWMKNWL 340
>gi|320095222|ref|ZP_08026924.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
oral taxon 178 str. F0338]
gi|319977850|gb|EFW09491.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
oral taxon 178 str. F0338]
Length = 319
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 65/336 (19%), Positives = 124/336 (36%), Gaps = 34/336 (10%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ K W+ N W+P +VP+ +DL W++ L DE+ M R
Sbjct: 7 EAINWNRIQDDKDLEVWD---RLTGNFWLPEKVPLSNDLPSWQT---LNKDEQTMTNRVF 60
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
++L +++ P AF E+VH+ ++ I ++L E E
Sbjct: 61 TGLTLLDTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINE 120
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
F E ++ KA Y + + E FY+G
Sbjct: 121 SFRWSNENEALQRKAQIIKSYYDGDDAEKRKV---------------ASTMLESFLFYSG 165
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F + K+ A+ + I+RDE++H + E+ + + + ++
Sbjct: 166 FYAPMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVGESTQERRDDLKDYTYSL 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFP 321
L+E E Y + +GL ++++++ AN+ +G E LF + NP
Sbjct: 226 LYELYENEEQYTEDLY--DPLGLT-EDVKKFLRYNANKALMNLGYEALFPHDATDVNPAI 282
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + + +FF + Y G + WD
Sbjct: 283 LAALSPNADENHDFFSGSGSSYVMGEVVDTEDEDWD 318
>gi|157371509|ref|YP_001479498.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
proteamaculans 568]
gi|157323273|gb|ABV42370.1| Ribonucleoside-diphosphate reductase [Serratia proteamaculans 568]
Length = 376
Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats.
Identities = 74/336 (22%), Positives = 135/336 (40%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M +S +V + K+ + + W P EV + D ++
Sbjct: 8 QNKNNQLLEPMFFGQSVNVARFDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y L + T
Sbjct: 125 HIIRNIVNDPAIVFDDIVTNEEILKRAKDISGYYDDLIEMTGYYHLLGEGTHQVNGKTVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
T A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VTLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ ++P + E QQ+ + A E +A G +GLN
Sbjct: 245 GTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAEQEKEWAEYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLGLPFATRSNPIPWINAWL 340
>gi|315605404|ref|ZP_07880447.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
oral taxon 180 str. F0310]
gi|315312973|gb|EFU61047.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces sp.
oral taxon 180 str. F0310]
Length = 329
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 68/347 (19%), Positives = 129/347 (37%), Gaps = 38/347 (10%)
Query: 20 DDKRM----LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
++ M + + N++ K W+ N W+P +VP+ +DL WK+ LT
Sbjct: 6 QEEPMAIEPVFEAINWNKIQDEKDLEVWD---RLTGNFWLPEKVPLSNDLPSWKT---LT 59
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
E+LM R ++L +++ P AF E+VH+ ++ I
Sbjct: 60 KGEQLMTNRVFTGLTLLDTLQGTVGAVSLIPDARTPHEEAVYTNIAFMESVHAKSYSSIF 119
Query: 136 TSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
++L E E F E ++ KA Y +
Sbjct: 120 STLLSTEEINESFRWSNENAALQKKAEIIKSYYDGDDAEKRKV---------------AS 164
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ E FY+GF + K+ A+ + I+RDE++H + E+
Sbjct: 165 TMLESFLFYSGFYAPMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAVNESSQER 224
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+ + + ++L+E E Y + +GL ++++++ AN+ +G E LF
Sbjct: 225 QDDLRDYTYSLLYELYENEEQYTEDLY--DPLGLT-EDVKKFLRYNANKALMNLGYEALF 281
Query: 314 KYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ NP + + + +FF + Y G + WD
Sbjct: 282 PHDATNVNPAILAALSPNADENHDFFSGSGSSYVMGEVVDTEDEDWD 328
>gi|183601891|ref|ZP_02963260.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
animalis subsp. lactis HN019]
gi|219682805|ref|YP_002469188.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
animalis subsp. lactis AD011]
gi|241190381|ref|YP_002967775.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|241195787|ref|YP_002969342.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|183218776|gb|EDT89418.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
animalis subsp. lactis HN019]
gi|219620455|gb|ACL28612.1| ribonucleoside-diphosphate reductase 2 beta chain [Bifidobacterium
animalis subsp. lactis AD011]
gi|240248773|gb|ACS45713.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|240250341|gb|ACS47280.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|295793368|gb|ADG32903.1| ribonucleotide-diphosphate reductase subunit beta [Bifidobacterium
animalis subsp. lactis V9]
Length = 321
Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats.
Identities = 64/328 (19%), Positives = 121/328 (36%), Gaps = 29/328 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +D+ W+ ++D E + R
Sbjct: 12 NWNRLDDEKDLEVWD---RLTGNFWLPEKVPVSNDIPDWRQ---MSDAEHTLTMRVFTGL 65
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L E F+
Sbjct: 66 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDEAFD 125
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ P + KA L Y + V + E FY+GF
Sbjct: 126 WSEKNPHLQRKAQIVLDYYEGDD---------------PLKRKVASTLLESFLFYSGFYL 170
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + E + + +L+E
Sbjct: 171 PMYFSSHAKLTNTADVIRLIIRDEAVHGYYIGYKYQKGLEMASDAKRAEMETYTYDLLNE 230
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
E+ Y H VGL+ E+++ + AN+ +G LF NP +
Sbjct: 231 LYENEVEYTHSLY--DEVGLS-DDVEKFLHYNANKALMNLGYPALFPSEICDVNPAILAA 287
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352
+ + +FF + Y G + D
Sbjct: 288 LSPNADENHDFFSGSGSSYVMGRAEETD 315
>gi|238753722|ref|ZP_04615083.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
ruckeri ATCC 29473]
gi|238707958|gb|EEQ00315.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
ruckeri ATCC 29473]
Length = 376
Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 129/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M + +V + K+ + + W P E+ + D + N
Sbjct: 8 QNKNNQLLEPMFLGQPVNVARFDQQKFAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEEILKRAKDISSYYDDLIEMTSYYHLLGEGNHQVNGKTVV 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLHALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ E QQ+ + A E +A G +GLN
Sbjct: 245 GTQHILNLMRSGEDDPEMAEIAVECQQQCYDLFVLAAEQEKEWAEYLFRDGSMIGLNKEI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL FK NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLGTPFKTRTNPIPWINAWL 340
>gi|226305840|ref|YP_002765800.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus
erythropolis PR4]
gi|229493405|ref|ZP_04387194.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
erythropolis SK121]
gi|226184957|dbj|BAH33061.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus
erythropolis PR4]
gi|229319721|gb|EEN85553.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
erythropolis SK121]
Length = 321
Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 64/330 (19%), Positives = 126/330 (38%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ +N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 12 NWNRVQDEKDAEVWD---RLVSNFWLPEKVPVSNDIPSWGT---LTAQEQQLTMRVFTGL 65
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ P AF E+VH+ ++ I ++L + F
Sbjct: 66 TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTPDIDDAFR 125
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA L Y S V + E FY+GF
Sbjct: 126 WSEENPNLQRKAQIVLDYYNGES---------------PLKRKVASTLLESFLFYSGFYL 170
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 171 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEQLTEAEREELKNYTFELLFE 230
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ + +G E LF E NP +
Sbjct: 231 LYENEVDYTQDLYDG--VGLT-EDVKKFLRYNANKALNNLGYEGLFPKDETDVNPAILSA 287
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 288 LSPNADENHDFFSGSGSSYVIGKAVNTEDD 317
>gi|15842613|ref|NP_337650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis CDC1551]
gi|31794226|ref|NP_856719.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
bovis AF2122/97]
gi|57117051|ref|YP_177921.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis H37Rv]
gi|121638932|ref|YP_979156.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|148662901|ref|YP_001284424.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis H37Ra]
gi|148824239|ref|YP_001288993.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis F11]
gi|167969649|ref|ZP_02551926.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis H37Ra]
gi|215405040|ref|ZP_03417221.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 02_1987]
gi|215412903|ref|ZP_03421607.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 94_M4241A]
gi|215428496|ref|ZP_03426415.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T92]
gi|215432000|ref|ZP_03429919.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis EAS054]
gi|215447324|ref|ZP_03434076.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T85]
gi|218754813|ref|ZP_03533609.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis GM 1503]
gi|219559083|ref|ZP_03538159.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T17]
gi|224991424|ref|YP_002646113.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
bovis BCG str. Tokyo 172]
gi|253797854|ref|YP_003030855.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis KZN 1435]
gi|254233678|ref|ZP_04927003.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
[Mycobacterium tuberculosis C]
gi|254365678|ref|ZP_04981723.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
[Mycobacterium tuberculosis str. Haarlem]
gi|254552123|ref|ZP_05142570.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|260188080|ref|ZP_05765554.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis CPHL_A]
gi|260202186|ref|ZP_05769677.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis T46]
gi|260206381|ref|ZP_05773872.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis K85]
gi|289444611|ref|ZP_06434355.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
tuberculosis T46]
gi|289448726|ref|ZP_06438470.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis CPHL_A]
gi|289553161|ref|ZP_06442371.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis KZN 605]
gi|289571250|ref|ZP_06451477.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis T17]
gi|289575758|ref|ZP_06455985.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis K85]
gi|289746856|ref|ZP_06506234.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 02_1987]
gi|289751720|ref|ZP_06511098.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis T92]
gi|289755164|ref|ZP_06514542.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis EAS054]
gi|289759173|ref|ZP_06518551.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T85]
gi|289763226|ref|ZP_06522604.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
[Mycobacterium tuberculosis GM 1503]
gi|294993448|ref|ZP_06799139.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 210]
gi|297635679|ref|ZP_06953459.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis KZN 4207]
gi|297732677|ref|ZP_06961795.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis KZN R506]
gi|298526518|ref|ZP_07013927.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 94_M4241A]
gi|306777354|ref|ZP_07415691.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu001]
gi|306781258|ref|ZP_07419595.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu002]
gi|306785899|ref|ZP_07424221.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu003]
gi|306790253|ref|ZP_07428575.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu004]
gi|306794748|ref|ZP_07433050.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu005]
gi|306798990|ref|ZP_07437292.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu006]
gi|306804833|ref|ZP_07441501.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu008]
gi|306809026|ref|ZP_07445694.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu007]
gi|306969126|ref|ZP_07481787.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu009]
gi|306973470|ref|ZP_07486131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu010]
gi|307081181|ref|ZP_07490351.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu011]
gi|307085780|ref|ZP_07494893.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu012]
gi|313660009|ref|ZP_07816889.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis KZN V2475]
gi|81671996|sp|Q50549|RIR2B_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta
nrdF2; AltName: Full=Ribonucleoside-diphosphate
reductase nrdF2; AltName: Full=Ribonucleotide reductase
R2-2 small subunit
gi|1395209|gb|AAB81406.1| ribonucleotide reductase R2-2 small subunit [Mycobacterium
tuberculosis]
gi|13882928|gb|AAK47464.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
[Mycobacterium tuberculosis CDC1551]
gi|31619821|emb|CAD96761.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2
(RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
[Mycobacterium bovis AF2122/97]
gi|41352780|emb|CAE55544.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF2
(RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
[Mycobacterium tuberculosis H37Rv]
gi|121494580|emb|CAL73061.1| Ribonucleoside-diphosphate reductase (beta chain) nrdF2
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|124599207|gb|EAY58311.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
[Mycobacterium tuberculosis C]
gi|134151191|gb|EBA43236.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
[Mycobacterium tuberculosis str. Haarlem]
gi|148507053|gb|ABQ74862.1| ribonucleoside-diphosphate reductase subunit beta NrdF2
[Mycobacterium tuberculosis H37Ra]
gi|148722766|gb|ABR07391.1| ribonucleoside-diphosphate reductase beta subunit nrdF2
[Mycobacterium tuberculosis F11]
gi|224774539|dbj|BAH27345.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
bovis BCG str. Tokyo 172]
gi|253319357|gb|ACT23960.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis KZN 1435]
gi|289417530|gb|EFD14770.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
tuberculosis T46]
gi|289421684|gb|EFD18885.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis CPHL_A]
gi|289437793|gb|EFD20286.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis KZN 605]
gi|289540189|gb|EFD44767.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis K85]
gi|289545004|gb|EFD48652.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis T17]
gi|289687384|gb|EFD54872.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 02_1987]
gi|289692307|gb|EFD59736.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis T92]
gi|289695751|gb|EFD63180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis EAS054]
gi|289710732|gb|EFD74748.1| ribonucleoside-diphosphate reductase (beta chain) nrdF2
[Mycobacterium tuberculosis GM 1503]
gi|289714737|gb|EFD78749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T85]
gi|298496312|gb|EFI31606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 94_M4241A]
gi|308214246|gb|EFO73645.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu001]
gi|308325901|gb|EFP14752.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu002]
gi|308329423|gb|EFP18274.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu003]
gi|308333268|gb|EFP22119.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu004]
gi|308336923|gb|EFP25774.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu005]
gi|308340739|gb|EFP29590.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu006]
gi|308344606|gb|EFP33457.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu007]
gi|308348554|gb|EFP37405.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu008]
gi|308353280|gb|EFP42131.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu009]
gi|308357113|gb|EFP45964.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu010]
gi|308361065|gb|EFP49916.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu011]
gi|308364701|gb|EFP53552.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis SUMu012]
gi|323718280|gb|EGB27458.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis CDC1551A]
gi|326902729|gb|EGE49662.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis W-148]
gi|328457631|gb|AEB03054.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Mycobacterium tuberculosis KZN 4207]
Length = 324
Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 65/330 (19%), Positives = 124/330 (37%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 15 NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P L AF E+VH+ ++ I ++L + F
Sbjct: 69 TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA LQY + V + E FY+GF
Sbjct: 129 WSEENRNLQRKAEIVLQYYRGDE---------------PLKRKVASTLLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDD 320
>gi|237747538|ref|ZP_04578018.1| ribonucleotide-diphosphate reductase subunit beta [Oxalobacter
formigenes OXCC13]
gi|229378900|gb|EEO28991.1| ribonucleotide-diphosphate reductase subunit beta [Oxalobacter
formigenes OXCC13]
Length = 376
Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 68/337 (20%), Positives = 130/337 (38%), Gaps = 27/337 (8%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M + +V + K+ + + W P EV + D ++
Sbjct: 8 QTKNNQLLEPMFFGQPVNVARYDQQKHEVFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ +I +A Y L +
Sbjct: 125 HIIRNIVNDPAIVFDDIVSNENIVRRATDISVYYDDLIEMTGYYHLLGEGTHQVNGKTVN 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
+ ++ L V+ E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VSLYELKKKLYMCLMSVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHL 243
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSR----TMLHEATLLEIAYAHETMPKG-FVGLNAP 290
++N + E ++ R + A E +A G +GLN
Sbjct: 244 TGTQHMLNLMGSGEDDPDMAEIAKECREQSIDLFVRAAEQEKEWADYLFRDGSMIGLNRD 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +G+ F+ NP PW++ +
Sbjct: 304 ILCQYVEYITNTRMQAVGMPLPFEIRSNPIPWINAWL 340
>gi|330004285|ref|ZP_08304843.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
MS 92-3]
gi|328536657|gb|EGF62979.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
MS 92-3]
Length = 380
Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 125/336 (37%), Gaps = 30/336 (8%)
Query: 18 NVDDKRMLNARS---DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+ + M S + KY + + W P EV + D + + L
Sbjct: 12 DATKEPMFLGNSVNVSRYDIQ--KYREFEKLIEKQLSFFWRPEEVDISQDRIDYMT--KL 67
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
D ER + NL + +S+ + + + S PE ++ AF E +HS ++ +I
Sbjct: 68 ADHERHIFNSNLRYQTLLDSVQGRSPNVTLLPLASIPELETWIETWAFSETIHSRSYTHI 127
Query: 135 ITSLGLDEGELFNMYREVP----------SITAKANWALQYTQTLSSPSFT-------TG 177
I + D E+F+ + K + + L F G
Sbjct: 128 IRGMVDDPSEIFDGIVTDEQIISRASSVSAEYDKLYQMVCAREHLGEDEFERLYASEFDG 187
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
Q L V E + FY FA + G + G A+ + I RDE+LH
Sbjct: 188 KPYPMQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKLLEGNAKIMRLIARDEALHCEG 247
Query: 238 GIDVINQIKIENPHLWTKEFQQKS----RTMLHEATLLEIAYAHETMPKG-FVGLNAPSC 292
++ ++ L K+ ++ + + E+ +A G +GLNA
Sbjct: 248 TERMLRNMRNGREGLLWKQIAEEEEPFVYQTMLDVAEQEMRWADYLFKDGSMIGLNAKIL 307
Query: 293 EQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVI 327
+QY+++ N ++ L PLF T +P PWM+ +
Sbjct: 308 KQYVKYRTNLAMKRLHLNPLFDDVTFDPLPWMNSWL 343
>gi|315445193|ref|YP_004078072.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Mycobacterium sp. Spyr1]
gi|315263496|gb|ADU00238.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Mycobacterium sp. Spyr1]
Length = 320
Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 66/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 11 NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 64
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L + F
Sbjct: 65 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTSEIDDAFR 124
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA +QY + V + E FY+GF
Sbjct: 125 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALADDATRQELKDYTYELLFE 229
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 230 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 319
>gi|292488819|ref|YP_003531706.1| ribonucleoside-diphosphate reductase 1 subunit beta [Erwinia
amylovora CFBP1430]
gi|292899970|ref|YP_003539339.1| ribonucleoside-diphosphate reductase 1 subunit beta [Erwinia
amylovora ATCC 49946]
gi|291199818|emb|CBJ46941.1| ribonucleoside-diphosphate reductase 1 beta subunit [Erwinia
amylovora ATCC 49946]
gi|291554253|emb|CBA21550.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
amylovora CFBP1430]
gi|312172977|emb|CBX81232.1| ribonucleoside-diphosphate reductase 1 beta chain [Erwinia
amylovora ATCC BAA-2158]
Length = 376
Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 74/336 (22%), Positives = 135/336 (40%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M +S +V + KY + + W P EV + D ++
Sbjct: 8 QNKNNQLLEPMFFGQSVNVARFDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWIETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I ++A Y L + T
Sbjct: 125 HIIRNIVNDPALVFDDIVTNEQILSRAKDISGYYDDLIEMTSYWHLLGEGTHQVNGKTVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ E ++ R ++ A E +A G +GLN
Sbjct: 245 GTQHMLNLLRSGVDDPEMAEIAKECRQECYDLFVLAAEQEKEWAEYLFSGGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R + +GL+ FK NP PW++ +
Sbjct: 305 LWQYIEYITNIRMNAVGLDLPFKTRSNPIPWINSWL 340
>gi|120403054|ref|YP_952883.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
vanbaalenii PYR-1]
gi|119955872|gb|ABM12877.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Mycobacterium vanbaalenii PYR-1]
Length = 324
Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats.
Identities = 67/333 (20%), Positives = 125/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K WE N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 15 NWNRLQDDKDAEVWE---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L + F
Sbjct: 69 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA +QY + V + E FY+GF
Sbjct: 129 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALESEATRQELKDYTYELLFE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323
>gi|83814991|ref|YP_444284.1| ribonucleoside-diphosphate reductase, beta subunit [Salinibacter
ruber DSM 13855]
gi|83756385|gb|ABC44498.1| ribonucleoside-diphosphate reductase, beta subunit [Salinibacter
ruber DSM 13855]
Length = 324
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 67/323 (20%), Positives = 131/323 (40%), Gaps = 18/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
L P +Y E + ++W+ E + D+ ++ TD ER +IK+ + A
Sbjct: 7 RVNLKPYEYPHLLEFKTAIRQSYWVHDEFSFEGDVQDFR--VNCTDAERSVIKKTMLAIA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E IY L PE + A E H + +++ LGL++ F
Sbjct: 65 QVEV-AVKTFWADIYDRLPVPEVGAVGMTFAESEVRHLDAYSHLLELLGLND--AFERIE 121
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E+P++ + + + + ++ F + +F + E + ++ F +LS
Sbjct: 122 EIPALIDRVEY--------LNSALEGTGSRDERAFAHSILLFSIFIEHVSLFSQFLIMLS 173
Query: 211 LGRANK-MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ K G+A + ++E +H FG++++N I+ E+P + F+Q+ R EA
Sbjct: 174 FDKHEKRFKGVANAVEATSKEEQIHGLFGVELMNIIREEHPEWFGPAFEQEVRAACEEAY 233
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
E G + L P + +++ N + ++P+F+ W E
Sbjct: 234 DAEQKVLDWIFADGELDFLPRPVVDAFLRDKFNESLKNVDVDPIFEVDPEHLGETRWFYE 293
Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
+ L K +FF R T Y + +
Sbjct: 294 EVLLTKGNDFFSKRSTSYSKMTQ 316
>gi|145224865|ref|YP_001135543.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
gilvum PYR-GCK]
gi|145217351|gb|ABP46755.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Mycobacterium gilvum PYR-GCK]
Length = 320
Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats.
Identities = 66/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 11 NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTAHEKQLTMRVFTGL 64
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L + F
Sbjct: 65 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTSEIDDAFR 124
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA +QY + V + E FY+GF
Sbjct: 125 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLALADDATRQELKDYTYELLFE 229
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 230 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVITEDEDWD 319
>gi|269963956|ref|ZP_06178265.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi
1DA3]
gi|269831299|gb|EEZ85449.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio harveyi
1DA3]
Length = 377
Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats.
Identities = 73/341 (21%), Positives = 132/341 (38%), Gaps = 26/341 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +S +V + K+ + + W P EV + D + N
Sbjct: 8 QNKNDQLKEPMFLGQSVNVARYDQQKFEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-TGTKDADQEFLQDLFV 191
+II ++ D +F+ E I +A Y L + + + +
Sbjct: 125 HIIRNIVNDPSVVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHVLNGETVK 184
Query: 192 FYVV---------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
+ E + FY FA + M G A+ + I RDE+LHLN
Sbjct: 185 VSLYDLKKKLYVCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLN 244
Query: 237 FGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+IN ++ +E +Q + EA E +A G +GLN
Sbjct: 245 GTQHMINLLRNGQDDFTFMQIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
QY+++I N R +GL + T NP PW++ +
Sbjct: 305 LSQYVEYITNIRMQAVGLPMAYPEATSNPIPWINAWLSSDN 345
>gi|254776333|ref|ZP_05217849.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
avium subsp. avium ATCC 25291]
Length = 320
Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats.
Identities = 68/333 (20%), Positives = 125/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +DL W + LT E+ M R
Sbjct: 11 NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTIRVFTGL 64
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L + F
Sbjct: 65 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 124
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA +QY + V + E FY+GF
Sbjct: 125 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAKRQELKDYTYELLFE 229
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 230 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 319
>gi|255535950|ref|YP_003096321.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Flavobacteriaceae bacterium 3519-10]
gi|255342146|gb|ACU08259.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit
[Flavobacteriaceae bacterium 3519-10]
Length = 324
Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats.
Identities = 69/320 (21%), Positives = 128/320 (40%), Gaps = 18/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y + + + W+ +EV D+ ++S L E+ +K L A
Sbjct: 7 RIGYKPFEYPEIMQFVEAINKSFWVHSEVDFTADVQDFQS--QLEPHEKNAVKNALLAIA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +Y HL PE A E HS + ++ LG ++ FN
Sbjct: 65 QIEVSV-KTFWGNLYNHLPKPELNGLGSTFAECEFRHSEAYSRLLEVLGYND--AFNHVV 121
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E+P+I + ++ S +E++ L +F ++ E + ++ FA ILS
Sbjct: 122 EIPAIKKRIDF--------LSNVLKHANSTTPKEYVSSLLLFSILIENVSLFSQFAIILS 173
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
R M ++ + DE +H N GI +IN+I+ E P L T + T++ +
Sbjct: 174 FTRFKGYMKNVSNIIAWTSVDEQIHANAGIYLINKIREEQPDLLTDSDIEDIYTLVDHSI 233
Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
LE G ++ + +M++ + +IG++ + + + P W E
Sbjct: 234 ELEAEILDWIFEMGEIDNVSKENLLNFMKYRVDDSLKKIGMQTRYNVSGDEYRPMVWFEE 293
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
+ +FF R +Y +
Sbjct: 294 EVFANSMDDFFAKRPVDYTK 313
>gi|220912864|ref|YP_002488173.1| ribonucleotide-diphosphate reductase subunit beta [Arthrobacter
chlorophenolicus A6]
gi|219859742|gb|ACL40084.1| Ribonucleoside-diphosphate reductase [Arthrobacter chlorophenolicus
A6]
Length = 324
Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats.
Identities = 66/336 (19%), Positives = 124/336 (36%), Gaps = 34/336 (10%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ K W NN W+P +VP+ +D+ W + LT E+ + R
Sbjct: 12 EAINWNRIQDDKDVDVWN---RLVNNFWLPEKVPLSNDVQSWNT---LTPVEQQLTMRVF 65
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
+++ +++ P AF E+VH+ ++ I ++L + E
Sbjct: 66 TGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDE 125
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
F E ++ KA + Y Q V + E FY+G
Sbjct: 126 AFRWSTENENLQKKAQIVMDYYQGDD---------------PLKRKVASTLLESFLFYSG 170
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F + K+ A+ + I+RDE++H + + +E + + +
Sbjct: 171 FYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALETVSEERRQEIKDYTFEL 230
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFP 321
L E E+ Y H+ VGL A ++++ + AN+ +G E +F NP
Sbjct: 231 LFELYENEVQYTHDLYDG--VGL-AEDVKKFLHYNANKALMNLGYEAMFPASVTDVNPAI 287
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + + +FF + Y G + WD
Sbjct: 288 LSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323
>gi|146329200|ref|YP_001209518.1| ribonucleotide reductase, beta subunit [Dichelobacter nodosus
VCS1703A]
gi|146232670|gb|ABQ13648.1| ribonucleotide reductase, beta subunit [Dichelobacter nodosus
VCS1703A]
Length = 325
Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats.
Identities = 69/323 (21%), Positives = 132/323 (40%), Gaps = 19/323 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
Q+ P +Y E + +++W+ TE D+ +K+ ++D ER + R++ +
Sbjct: 9 RIQIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQDYKT--AISDAERTALTRSMLAIS 66
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +Y + E A E H + +++ LG++ ELF
Sbjct: 67 QIEVSV-KRFWGDLYHYFPKAEIDDVGGTFAESEVRHKDAYSFLLEQLGMN--ELFTQIT 123
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+P++ A+ + + + +QE + L +F + E + + F ++S
Sbjct: 124 HIPALMARIEYMEAFMRN---------KDKNNQELVLSLVLFSLFVEHISLFGQFLIMMS 174
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ N GI+ + ++E +H FGI + + IK E+P L+T F +T+ +A
Sbjct: 175 FNKYRNLFKGISNAVEATSKEEEIHGRFGIALYHIIKEEHPDLFTDSFYHHLKTLADQAL 234
Query: 270 LLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSE 325
E + G + L + E Y+ N +G+E + E W
Sbjct: 235 AAERGILNWIFENGDLPFLQQKTVENYIVNRYNNSLSVLGIESPYTVDEERLKETQWFDI 294
Query: 326 VIDLKKEKNFFETRVTEYQQGAE 348
I KE +FF R T+Y + +
Sbjct: 295 EILSGKENDFFYKRSTDYSKKTK 317
>gi|270262779|ref|ZP_06191050.1| ribonucleoside-diphosphate reductase 1 subunit beta [Serratia
odorifera 4Rx13]
gi|270043463|gb|EFA16556.1| ribonucleoside-diphosphate reductase 1 subunit beta [Serratia
odorifera 4Rx13]
Length = 359
Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats.
Identities = 69/311 (22%), Positives = 125/311 (40%), Gaps = 24/311 (7%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
K+ + + W P EV + D ++ L + E+ + NL + +S+
Sbjct: 16 KHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKHIFISNLKYQTLLDSIQG 72
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+ +A+ +S PE ++ +F E +HS ++ +II ++ D +F+ I
Sbjct: 73 RSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVNDPALVFDDIVTNEEILK 132
Query: 158 KANWALQYTQTLS----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
+A Y L + T A ++ L + E + F
Sbjct: 133 RAKDISGYYDDLIEMTGYYHLLGEGTHQVNGKTVTVNLRALKKQLYICLMSVNALEAIRF 192
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK--IENPHL--WTKEF 257
Y FA + M G A+ + I RDE+LHL ++N ++ ++P + E
Sbjct: 193 YVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHILNLMRSGADDPEMAEIAVEC 252
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
QQ+ + A E +A G +GLN QY+++I N R +GL F+
Sbjct: 253 QQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLGLPFETR 312
Query: 317 ENPFPWMSEVI 327
NP PW++ +
Sbjct: 313 SNPIPWINAWL 323
>gi|229818600|ref|YP_002880126.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM
12333]
gi|229564513|gb|ACQ78364.1| Ribonucleoside-diphosphate reductase [Beutenbergia cavernae DSM
12333]
Length = 326
Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats.
Identities = 64/330 (19%), Positives = 124/330 (37%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W NN W+P +VP+ +D+ W + LTD E+ + R
Sbjct: 17 NWNRLQDEKDLEVWN---RLVNNFWLPEKVPVSNDIPSWGT---LTDVEKTLTMRVFTGL 70
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L + F
Sbjct: 71 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDDAFR 130
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA ++Y + V + E FY+GF
Sbjct: 131 WSEENSNLQRKAEIVMEYYRGDE---------------PLKRKVASTLLESFLFYSGFYL 175
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 176 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLEALAPEQREEIKSYTYELLFE 235
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 236 LYENEVQYTEDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPKDETDVNPAILAA 292
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 293 LSPNADENHDFFSGSGSSYVIGKAVNTEDD 322
>gi|111023403|ref|YP_706375.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
jostii RHA1]
gi|110822933|gb|ABG98217.1| ribonucleotide reductase [Rhodococcus jostii RHA1]
Length = 321
Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats.
Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 12 NWNRVQDEKDAEVWD---RLVGNFWLPEKVPVSNDIPSWGT---LTPQEKQLTMRVFTGL 65
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ P AF E+VH+ ++ I ++L + F
Sbjct: 66 TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFR 125
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA + Y Q V + E FY+GF
Sbjct: 126 WSEENPNLQRKAEIVMDYYQGDE---------------PLKRKVASTLLESFLFYSGFYL 170
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + + + + +L E
Sbjct: 171 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEQLTEAERDDLKNYTFELLFE 230
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 231 LYDNEVDYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 287
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 288 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 320
>gi|54026269|ref|YP_120511.1| ribonucleotide-diphosphate reductase subunit beta [Nocardia
farcinica IFM 10152]
gi|54017777|dbj|BAD59147.1| putative ribonucleoside-diphosphate reductase beta subunit
[Nocardia farcinica IFM 10152]
Length = 320
Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats.
Identities = 65/319 (20%), Positives = 121/319 (37%), Gaps = 31/319 (9%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
E + N W+P +VP+ +D+ W + LT E+ + R +++ ++
Sbjct: 22 EVWARLTGNFWLPEKVPVSNDIPSWNT---LTPHEQQLTMRVFTGLTLLDTIQGTVGAVS 78
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
+ P L AF E+VH+ ++ I ++L + E F E ++ KA
Sbjct: 79 LIPDALTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSEENRNLQRKAEI 138
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
L Y Q V + E FY+GF + K+ A
Sbjct: 139 VLDYYQGDD---------------PLKRKVASTLLESFLFYSGFYLPMHWSSRAKLTNTA 183
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I+RDE++H + + + +E + + +L+E E+ Y +
Sbjct: 184 DMIRLIIRDEAVHGYYIGYKYQRGLEQVSEAEREELKNYTFELLYELYENEVEYTQDLY- 242
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFET 338
VGL + ++++ AN+ +G E LF E NP + + + +FF
Sbjct: 243 -DEVGLT-EDVKTFLRYNANKALMNLGYEGLFPADETRVNPAILSALSPNADENHDFFSG 300
Query: 339 RVTEYQQGAEL-----KWD 352
+ Y G + WD
Sbjct: 301 SGSSYVIGKAVNTEDEDWD 319
>gi|254505962|ref|ZP_05118107.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
parahaemolyticus 16]
gi|219551185|gb|EED28165.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio
parahaemolyticus 16]
Length = 323
Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats.
Identities = 69/334 (20%), Positives = 123/334 (36%), Gaps = 35/334 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ WK LT +E+ + R
Sbjct: 13 NWNRMQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQTWKQ---LTQEEQTLTIRVFTGL 66
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A+ P L AF EAVH+ ++ + ++L E F
Sbjct: 67 TLLDTIQNTVGAPALMADARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFR 126
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P + KA L+ P V V E FY+GF
Sbjct: 127 WAEENPLLQKKAQLVLEDYLAQDDPLKKK--------------VASVFLESFLFYSGFYL 172
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + E + + ++ +++
Sbjct: 173 PMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAFNELSQQEQAKVKDEAYSLMFS 232
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
+E Y + VGL + ++ + AN+ +G EPLF NP M+
Sbjct: 233 LYEIESQYTESLYDQ--VGLT-EDVKHFLHYNANKALMNLGFEPLFPDELCQVNP-AIMA 288
Query: 325 EVI-DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + + +FF + Y G + WD
Sbjct: 289 ALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 322
>gi|320538993|ref|ZP_08038668.1| putative ribonucleoside diphosphate reductase 1, beta subunit,
ferritin-like protein [Serratia symbiotica str. Tucson]
gi|320030926|gb|EFW12930.1| putative ribonucleoside diphosphate reductase 1, beta subunit,
ferritin-like protein [Serratia symbiotica str. Tucson]
Length = 376
Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats.
Identities = 75/336 (22%), Positives = 137/336 (40%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M +S +V + K+ + + W P EV + D ++
Sbjct: 8 QNKNNPLLEPMFFGQSVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSCDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y L + T
Sbjct: 125 HIIRNIVNDPALVFDDIVTNEEILKRAKDISGYYDDLIEMTSYYHLLGEGRHQVNGKTVT 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
A ++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLRALKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLT 244
Query: 237 FGIDVINQIK--IENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ ++P + E QQ+ + A E +A G +GLN
Sbjct: 245 GTQHMLNLMRSGADDPEMAEIAVECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKDI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I+N R +GLE FK NP PW++ +
Sbjct: 305 LCQYVEYISNIRMQAVGLELPFKTRSNPIPWINAWL 340
>gi|326536452|ref|YP_004300883.1| NrdB aerobic ribonucleoside diphosphate reductase small subunit
[Aeromonas phage 65]
gi|312262798|gb|ADQ53054.1| NrdB aerobic ribonucleoside diphosphate reductase small subunit
[Aeromonas phage 65]
Length = 376
Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats.
Identities = 63/344 (18%), Positives = 127/344 (36%), Gaps = 24/344 (6%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
S + + + +V + +K ++ + W PTE+ M D
Sbjct: 3 STVFNTNIVDHTNQHMFFGEEPNVQRFDTMKTRVFYDLMDRQLSFFWRPTEIDMSKDSIQ 62
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV- 126
+ L+D + + +NL + +S+ L + H+S+ ++ E
Sbjct: 63 FHQ---LSDHAKHVYTQNLFVQSLLDSIQGRGPNLVLLPHVSDVTLENFITAWTMVEGTI 119
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD------ 180
HS ++ +++ ++ + E+F+ P I +A +Y + S
Sbjct: 120 HSDSYTHMVRAVYPNPTEVFDQVMLTPEIMKRAEAITKYYDAVLLESDKLSAMKFLNLDE 179
Query: 181 --------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDE 231
+E L E + FY F S M G A+ ++I RDE
Sbjct: 180 SVLNSQLTKLKESLYLCVHTINALEAIRFYVSFICNFSFPEFSGTMEGSAKIMKFIARDE 239
Query: 232 SLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKGFV-G 286
+LHL +I++ + E + K+ ++ E E +A M + G
Sbjct: 240 NLHLKATQTIISRWQTGKDDPEMVEIAKRLEGKAVSIFEEVVAQEKEWAEYLMGDKSLNG 299
Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLK 330
LN Y++++A+ R GL + +NP PW+++ ++
Sbjct: 300 LNRDVLCNYIEYLADNRMRSAGLPSSYAKRKNPLPWVTKWLNSD 343
>gi|238794995|ref|ZP_04638591.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
intermedia ATCC 29909]
gi|238725698|gb|EEQ17256.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
intermedia ATCC 29909]
Length = 376
Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 128/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M +S +V + K+ + + W P E+ + D + N
Sbjct: 8 QNKNNQLLEPMFFGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVI 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ E QQ+ + A E +A G +GLN
Sbjct: 245 GTQHILNLMRSGEDDPEMAEIAIECQQQCYDLFVLAAQQEKEWAEYLFRDGSMIGLNKEI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLGVPFATRTNPIPWINSWL 340
>gi|41409193|ref|NP_962029.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
avium subsp. paratuberculosis K-10]
gi|41398013|gb|AAS05643.1| NrdG [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 324
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 68/333 (20%), Positives = 125/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +DL W + LT E+ M R
Sbjct: 15 NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L + F
Sbjct: 69 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA +QY + V + E FY+GF
Sbjct: 129 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAKRQELKDYTYELLFE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323
>gi|118465359|ref|YP_883075.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
avium 104]
gi|118166646|gb|ABK67543.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
avium 104]
Length = 324
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 68/333 (20%), Positives = 125/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +DL W + LT E+ M R
Sbjct: 15 NWNRLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLQSWAT---LTAHEKQMTMRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L + F
Sbjct: 69 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA +QY + V + E FY+GF
Sbjct: 129 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDDAKRQELKDYTYELLFE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323
>gi|157961884|ref|YP_001501918.1| ribonucleotide-diphosphate reductase subunit beta [Shewanella
pealeana ATCC 700345]
gi|157846884|gb|ABV87383.1| Ribonucleoside-diphosphate reductase [Shewanella pealeana ATCC
700345]
Length = 376
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 69/311 (22%), Positives = 116/311 (37%), Gaps = 24/311 (7%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
KY + + W P EV + D + L + E+ + NL + +S+
Sbjct: 33 KYEVFEKLIEKQLSFFWRPEEVDVSRDKIDY---AALPEHEKHIFISNLKYQTLLDSIQG 89
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+ +A +S PE ++ +F E +HS ++ +II ++ D +FN E I
Sbjct: 90 RSPNVAFLPLVSLPELETWIETWSFSETIHSRSYTHIIRNIVNDPSIVFNDIVENEEILK 149
Query: 158 KANWALQYTQTLS----------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
+A+ Y L TK ++ L V V E + F
Sbjct: 150 RASDIANYYDHLIKLSQAYHLLGEGSHEIDGEIIEVTKREIKKALYLCMVSVNVLEAIRF 209
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
Y FA + M G A+ + I RDE+LHLN ++ + E ++
Sbjct: 210 YVSFACSFAFAERKVMEGNAKIIRLIARDEALHLNSTQHILKIMHAGKDDPEMAEIAKEC 269
Query: 262 RT----MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ +A E +A G +GLN QY+++I N R + +
Sbjct: 270 EQTAIDIFIKAAEQEKEWAKYLFKDGSMIGLNETILCQYVEYITNERMKAVNFASPYAEQ 329
Query: 317 ENPFPWMSEVI 327
NP PWM +
Sbjct: 330 TNPLPWMKNWL 340
>gi|317492553|ref|ZP_07950980.1| ribonucleotide reductase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316919303|gb|EFV40635.1| ribonucleotide reductase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 376
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 70/328 (21%), Positives = 129/328 (39%), Gaps = 25/328 (7%)
Query: 22 KRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
+ M +S +V + K+ + + W P EV + D ++ L + E+
Sbjct: 16 EPMFFGQSVNVARYDQQKHEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ---ALPEHEKH 72
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ NL + +S+ + +A+ +S PE ++ +F E +HS ++ +II ++
Sbjct: 73 IFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVN 132
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTTGTKDADQE 184
D +F+ I +A Y L + T A ++
Sbjct: 133 DPATVFDDIVTNEEILKRAKDISGYYDDLIEMSSYWHLLGEGTHNVNGKTVTVNLRALKK 192
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
L + E + FY FA + M G A+ + I RDE+LHL ++N
Sbjct: 193 QLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHILNL 252
Query: 245 IKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFI 299
++ E +Q+ + A E +A G +GLN QY+++I
Sbjct: 253 MRSGQDDPEMAEVAVECEQQCYDLFVLAAEQEKEWADYLFRDGSMIGLNKDILCQYVEYI 312
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVI 327
N R +GL+ F+ NP PW++ +
Sbjct: 313 TNIRMQAVGLKLPFQTRSNPIPWINAWL 340
>gi|319441868|ref|ZP_07991024.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
variabile DSM 44702]
Length = 332
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 57/339 (16%), Positives = 116/339 (34%), Gaps = 48/339 (14%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P +VP+ +D+ W + L++ E+ R
Sbjct: 23 NWNTIPDDKDLEVWD---RLTGNFWLPEKVPLSNDIKSWGT---LSEAEQTATMRVFTGL 76
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ ++ P AF E+VH+ ++ I +L + F
Sbjct: 77 TMLDTIQGTVGATSLIDDAVTPHEEAVFTNIAFMESVHAKSYSSIFMTLASTPQINDAFR 136
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA+ L + Q + E FY+GF
Sbjct: 137 WSEENENLQTKADIVLNFYQGDDPLKKKV---------------ASTLLESFLFYSGFYL 181
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + ++ +
Sbjct: 182 PMYWSSHAKLTNTADVIRLIIRDEAVHGYYIGYKYQRALEHETEARRQELKDHTFELVFD 241
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---------- 317
E Y + +G ++++++ AN+ + +G E LF E
Sbjct: 242 LYDNECQYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPVDETRVSPSIISA 298
Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQG---AELKWD 352
NP + +FF + Y G + D
Sbjct: 299 LNP--------GGDENHDFFSGSGSSYVIGKAENTVDDD 329
>gi|118469232|ref|YP_886661.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
smegmatis str. MC2 155]
gi|118469934|ref|YP_885432.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
smegmatis str. MC2 155]
gi|118170519|gb|ABK71415.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
smegmatis str. MC2 155]
gi|118171221|gb|ABK72117.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
smegmatis str. MC2 155]
Length = 324
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 68/333 (20%), Positives = 127/333 (38%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W N W+P +VP+ +D+ W + LTD+E+ + R
Sbjct: 15 NWNRLQDEKDAEVWH---RLTGNFWLPEKVPVSNDIQSWHT---LTDNEKQLTMRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P L AF E+VH+ ++ I ++L + F
Sbjct: 69 TLLDTIQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSNIFSTLCSTAEIDDAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA +QY + V + E FY+GF
Sbjct: 129 WSEENPNLQRKAAIVMQYYRGDE---------------PLKRKVASTLLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDEEKKQELKDYTYELLFE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 234 LYDNEVEYTQDLY--DSVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK-----WD 352
+ + +FF + Y G + WD
Sbjct: 291 LAPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323
>gi|257069608|ref|YP_003155863.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Brachybacterium faecium DSM 4810]
gi|256560426|gb|ACU86273.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Brachybacterium faecium DSM 4810]
Length = 322
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 59/336 (17%), Positives = 123/336 (36%), Gaps = 34/336 (10%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ K W+ N W+P ++P+ +D+ W + +++E+ M
Sbjct: 10 EAINWNRIPDPKDQEVWD---RLTGNFWLPEKIPLSNDIQSWSRR---SEEEQKMAMHVF 63
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
+++ +++ P AF E+VH+ ++ I ++L + E
Sbjct: 64 TGLTLLDTVQGTVGAISLIPDAVTPHEEAVYTNIAFMESVHAKSYSQIFSTLANTKQIDE 123
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
F+ + KA + Y + + V V+ E FY+G
Sbjct: 124 AFHWGATNEQLQKKAQIIMSYYEGDD---------------PEKRKVASVLLESFLFYSG 168
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F + ++ A+ + I+RDE++H + + + E + + ++
Sbjct: 169 FYLPMRYSSHGELTNTADIIRLIIRDEAVHGYYIGYKYQKAVEKLSAERQAELKDYTFSL 228
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFP 321
L E E Y + VG + ++++ AN+ +G E LF NP
Sbjct: 229 LMELYDNEEVYTEDIY--DPVGWT-EDVKVFLRYNANKALMNLGYEGLFPQEATQVNPAI 285
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAELK-----WD 352
S + + +FF + Y G ++ WD
Sbjct: 286 LASLSPNADENHDFFSGSGSSYVMGKAVETEDDDWD 321
>gi|227504013|ref|ZP_03934062.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
6940]
gi|227199407|gb|EEI79455.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
6940]
Length = 329
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 63/330 (19%), Positives = 122/330 (36%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P +VP+ +DL WK+ LT+ E+ R
Sbjct: 20 NWNTVPDDKDSEVWD---RLTGNFWLPEKVPVSNDLQSWKT---LTEHEQQTTMRVFAGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ P AF E+VH+ ++ I +L + F
Sbjct: 74 TLLDTIQGTVGAVSLLPDAKTPHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA + Y + + E FY+GF
Sbjct: 134 WSEENENLQRKAKIVMSYYKGADPLKKKV---------------ASTLLESFLFYSGFYL 178
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + E P +E + + +L+E
Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQNGYNELPAEKQEEIKGYTFDLLYE 238
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
EI Y + +G ++++++ AN+ + +G E LF E +P S
Sbjct: 239 LYDNEIDYTEDLY--DELGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDD 325
>gi|295395248|ref|ZP_06805456.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium
mcbrellneri ATCC 49030]
gi|294972010|gb|EFG47877.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium
mcbrellneri ATCC 49030]
Length = 324
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/341 (18%), Positives = 127/341 (37%), Gaps = 28/341 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
+ +K L + D ++ E + N W+P +VP+ +D+ W + LTDDE
Sbjct: 1 MSEKLKLVSHVDAINWNRIEDDVDMEVWDRLTANFWLPEKVPLSNDVQSWAT---LTDDE 57
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
+L+ R +++ +++ P AF E+VH+ ++ I ++L
Sbjct: 58 KLLTMRVFTGLTLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTL 117
Query: 139 GLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
E F E ++ KA + Y + V +
Sbjct: 118 CNTREIDEAFRWSTENQNLQKKAQIIVDYYRGDD---------------PLKRKVASTLL 162
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
E FY+GF + K+ A+ + I+RDE++H + + E
Sbjct: 163 ESFLFYSGFYLPMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQRALANESTERRDE 222
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY- 315
+ + +L++ E+ Y H+ VGL+ ++++ + AN+ +G E +F
Sbjct: 223 LKDYTFALLYDLYENEVQYTHDLY--DSVGLS-EDVKKFLNYNANKALMNLGYEAMFPST 279
Query: 316 --TENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
NP + + +FF + Y + + D
Sbjct: 280 VTDVNPAILSALSPSSDENHDFFSGSGSSYVIGKAENTEDD 320
>gi|238760194|ref|ZP_04621340.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
aldovae ATCC 35236]
gi|238701573|gb|EEP94144.1| Ribonucleoside-diphosphate reductase 1 subunit beta [Yersinia
aldovae ATCC 35236]
Length = 376
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 71/336 (21%), Positives = 128/336 (38%), Gaps = 25/336 (7%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + N + M +S +V + K+ + + W P E+ + D + N
Sbjct: 8 QNKNNQLLEPMFFGQSVNVARFDQQKHAIFEKLIEKQLSFFWRPEEIDVSRDRIDY---N 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 ALPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS----------------SPSFTT 176
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEILKRAKDISAYYDDLIEMTSYYHLLGEGTHQVNGKTVV 184
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
++ L + E + FY FA + M G A+ + I RDE+LHL
Sbjct: 185 VNLHELKKQLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIKMIARDEALHLT 244
Query: 237 FGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
++N ++ E QQ+ + A E +A G +GLN
Sbjct: 245 GTQHILNLMRAGEDDPEMAEIAIECQQQCYDLFVLAAEQEKEWAEYLFRDGSMIGLNKEI 304
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL F NP PW++ +
Sbjct: 305 LCQYVEYITNIRMQAVGLGIPFATRTNPIPWINSWL 340
>gi|269864946|ref|XP_002651751.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|269865852|ref|XP_002652068.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|269866233|ref|XP_002652201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220062966|gb|EED41855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063214|gb|EED41988.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063944|gb|EED42305.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 226
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 28/235 (11%)
Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSS 171
+ Q E +HS + +I +L D+ E LFN +PSI KA WA ++ + +S
Sbjct: 1 MFYGFQIAIENIHSEMYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASDTS 60
Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
V + EG++F FA I L + M G+ + I RDE
Sbjct: 61 FD--------------TRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDE 106
Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
LH +F + I + ++ EA +E + E++P +G+N
Sbjct: 107 GLHTDFACLLHKYINNK---------CTVIEDIVREAVAIEQEFLSESLPVSLIGMNCKL 157
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
QY++F+A+R +G + ++ + NPF +M E I L+ + NFFE R YQ+G
Sbjct: 158 MCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 210
>gi|298345735|ref|YP_003718422.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
curtisii ATCC 43063]
gi|304390565|ref|ZP_07372518.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
gi|298235796|gb|ADI66928.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
curtisii ATCC 43063]
gi|304326321|gb|EFL93566.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
curtisii subsp. curtisii ATCC 35241]
Length = 322
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/323 (18%), Positives = 119/323 (36%), Gaps = 26/323 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P ++P+ +D+ WK+ L +DE+ M R
Sbjct: 13 NWNDIEDDKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLL 69
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ +++ P AF E+VH+ ++ + ++L E E F
Sbjct: 70 DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEIKESFRWSE 129
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA+ L Y S + E FY+GF +
Sbjct: 130 ENEYLQKKAHIVLDYYHGNDSEKRKV---------------ASTMLESFLFYSGFYAPMY 174
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + E+ +E + + ++L +
Sbjct: 175 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAMRESSESRRQEMKDYTFSLLMDLYD 234
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E Y +GL ++++++ AN+ +G E LF + NP +
Sbjct: 235 NEELYTETLY--DPLGLT-EDVKKFLKYNANKALMNLGYEALFTADQVNVNPAILAALSP 291
Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
+ +FF + Y G +
Sbjct: 292 AADENHDFFSGSGSSYAIGTAEE 314
>gi|294877483|ref|XP_002768004.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239870142|gb|EER00722.1| ribonucleotide reductase R2 subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 247
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 22/201 (10%)
Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
++ +F +PS+ KA WAL + D F + L Y EG+
Sbjct: 45 QEKERIFEAIETIPSVQHKAEWALAWIN-------------DDNCFAERLVA-YACVEGI 90
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
F F + L + M G+ + I RDE LH +FG + N +T+ ++
Sbjct: 91 LFSGSFCALFWLKKRGLMPGLTFSNELISRDEGLHTDFGCLLY------NMLKFTRLPEE 144
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
+ ++ A +E + + +P G +G+NA +Y++F+A+R +G ++ + NP
Sbjct: 145 RVEDIVRSAVNVEREFITDALPVGLIGMNAELMGRYIEFVADRLLVALGYAKIYN-SANP 203
Query: 320 FPWMSEVIDLKKEKNFFETRV 340
F WM+ +I L+ + NFFE RV
Sbjct: 204 FDWMT-MISLQGKTNFFEKRV 223
>gi|312130784|ref|YP_003998124.1| ribonucleotide reductase [Leadbetterella byssophila DSM 17132]
gi|311907330|gb|ADQ17771.1| ribonucleotide reductase [Leadbetterella byssophila DSM 17132]
Length = 324
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/320 (20%), Positives = 117/320 (36%), Gaps = 18/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y + +W+ +EV D + S L+ ER +K +L A
Sbjct: 7 RINYKPFEYPEILTFTSAINKAYWVHSEVDFTADTQDFHSH--LSPAERSAVKNSLLAIA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E +Y H PE A E HS + ++ LG + F
Sbjct: 65 QIEV-AVKTFWGNLYDHFPKPEFNGLGTTFAECEFRHSEAYSRLLEVLGYNNE--FQKLL 121
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E+P I + + + ++++ L +F ++ E + ++ FA ILS
Sbjct: 122 EIPVIKQRVEYL--------GGVLKDTRSEDRKKYVISLILFTILIENVSLFSQFAIILS 173
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
R M ++ + DE +H N GI ++N I+ E P + E + + E+
Sbjct: 174 FTRFKGYMKNVSNIIAWTSVDEQIHANGGIYIVNTIRDEFPDFFDPETITQIEDTVRESI 233
Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSE 325
+E +G + +M+F + +IG PLF + P W E
Sbjct: 234 EVEERILDWIFSEGEIEIIKKKDLLNFMKFRIDDSMKKIGFSPLFHVSSADYQPIAWFEE 293
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
+ +FF R +Y +
Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313
>gi|294338139|emb|CBJ93977.1| Probable ribonucleotide reductase (small subunit) [Campylobacter
phage CP220]
Length = 369
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 67/330 (20%), Positives = 132/330 (40%), Gaps = 19/330 (5%)
Query: 17 VNVDDKRMLNA---RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
++ + + S + +KY + W EV D A + N
Sbjct: 10 IDFTKEPLFFGTGKNSQRYDV--IKYPIFETLFKKMAGFDWQEDEVQCTKDQADF---NV 64
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL-LRQAFEEAVHSHTFQ 132
L + + R L +S+ ++ I ++NPE + Q FE + HS ++
Sbjct: 65 LNEAMKHSYTRVLNKLIFLDSIQGRGLLQTIGSIVTNPELEVCMTEWQRFEISRHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT----LSSPSFTTGTKDADQEFLQD 188
+I+ S+ + ++F+ E+P + A+ + + ++ + + + +
Sbjct: 125 HILRSVYANPSKIFDESFEIPELLELADSISKPYEEAFEAVTKYHLGLIDTEEVKVKVLN 184
Query: 189 LFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRDESLH---LNFGIDVINQ 244
+ V + EG+ FY+GFA I S+ M + Q I RDE+LH I ++++
Sbjct: 185 MLVEINILEGVRFYSGFATIWSMHYSQGLMERTGKILQLICRDENLHLAITQNLIKILSR 244
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRR 303
E + EA E + KG F+G+ + Y++++ N+R
Sbjct: 245 SPEEGFINAWNSIKDNITDRYLEAADQEFKWIDYLFSKGAFLGMTPELAKNYIKYLINKR 304
Query: 304 CHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
IG + +F + +NP PW+ I+ K
Sbjct: 305 LKAIGFKEVFAGFNKNPIPWVETYINYDKN 334
>gi|262203177|ref|YP_003274385.1| ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM
43247]
gi|262086524|gb|ACY22492.1| Ribonucleoside-diphosphate reductase [Gordonia bronchialis DSM
43247]
Length = 334
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P +VP+ +D+ W + LT+ E+ + R
Sbjct: 25 NWNRVPDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWNT---LTEYEKQLTMRVFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ + P L AF E+VH+ ++ I ++L + E F
Sbjct: 79 TLLDTIQGTVGAVSLIPDATTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFR 138
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA + Y + V + E FY+GF
Sbjct: 139 WSEENDQLQRKAQIVMDYYRGDD---------------PLKRKVASTLLESFLFYSGFYL 183
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 184 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLEVQTAERRQELKDYTFELLFE 243
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y VGL ++++++ AN+ +G E +F E NP +
Sbjct: 244 LYDNESDYTEALY--DEVGLT-EDVKKFLRYNANKALMNLGYEAMFPKDETDVNPAILSA 300
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 333
>gi|315654326|ref|ZP_07907234.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
curtisii ATCC 51333]
gi|315657771|ref|ZP_07910651.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
gi|315491361|gb|EFU80978.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
curtisii ATCC 51333]
gi|315491568|gb|EFU81179.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
Length = 322
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/323 (18%), Positives = 120/323 (37%), Gaps = 26/323 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P ++P+ +D+ WK+ L +DE+ M R
Sbjct: 13 NWNDIEDDKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNEDEKNMTNRVFTGLTLL 69
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ +++ P AF E+VH+ ++ + ++L E E F
Sbjct: 70 DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSVFSTLLSTEEINESFRWSE 129
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA+ L Y + V + E FY+GF +
Sbjct: 130 ENEYLQKKAHIVLDYYHGND---------------PEKRKVASTMLESFLFYSGFYAPMY 174
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + E+ +E + + ++L +
Sbjct: 175 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLAMRESSESRRQEMKDYTFSLLMDLYD 234
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E Y +GL ++++++ AN+ +G E LF + NP +
Sbjct: 235 NEELYTETLY--DPLGLT-EDVKKFLKYNANKALMNLGYEALFTADQVNVNPAILAALSP 291
Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
+ +FF + Y G +
Sbjct: 292 AADENHDFFSGSGSSYAIGTAEE 314
>gi|297570727|ref|YP_003696501.1| ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum
DSM 20595]
gi|296931074|gb|ADH91882.1| Ribonucleoside-diphosphate reductase [Arcanobacterium haemolyticum
DSM 20595]
Length = 324
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 122/333 (36%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+++ K W+ N W+P ++P+ +D+ W + L E+LM R
Sbjct: 15 NWNKIIDEKDQEVWD---RLTGNFWLPEKIPLSNDIQSWNT---LKPHEQLMTTRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ P L AF E+VH+ ++ I ++L + E F
Sbjct: 69 TLLDTVQGTVGAISLIPDAITPHEEAVLTNIAFMESVHAKSYSSIFSTLISSQEIEETFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P + KA L Y + + V + E FY+GF
Sbjct: 129 WSEENPYLQKKAQIVLDYYRGDD---------------PEKRKVASTMLESFLFYSGFYA 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + Q E + ++L +
Sbjct: 174 PMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQQAVKRASAERQAELMDYTYSLLED 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y +GL + ++++ AN+ +G E LF + NP +
Sbjct: 234 LYENEEGYTESLY--DEMGLT-EDVKMFLRYNANKALMNLGYEALFPADQTAVNPAILAA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
+ + +FF + Y G WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGTAEATEDEDWD 323
>gi|323495950|ref|ZP_08101016.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
sinaloensis DSM 21326]
gi|323318985|gb|EGA71930.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
sinaloensis DSM 21326]
Length = 323
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 68/334 (20%), Positives = 124/334 (37%), Gaps = 35/334 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ WK LT++E+ + R
Sbjct: 13 NWNRMQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGL 66
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A+ P L AF EAVH+ ++ + +++ E F
Sbjct: 67 TLLDTIQNTVGAPALMADARTPHEEAVLTNIAFMEAVHARSYSSVFSTMCTTPQIDEAFR 126
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P + KA L+ P V V E FY+GF
Sbjct: 127 WADENPLLQKKAQLVLEDYLAQGDPLKKK--------------VASVFLESFLFYSGFYL 172
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + E + + ++ +++
Sbjct: 173 PMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAFNELSEQEQAKVKDEAYSLMFS 232
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
+E Y + VGL + ++ + AN+ +G EPLF NP M+
Sbjct: 233 LYEIESQYTESLYDQ--VGLT-EDVKHFLHYNANKALMNLGFEPLFPDELCQVNP-AIMA 288
Query: 325 EVI-DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + + +FF + Y G + WD
Sbjct: 289 ALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 322
>gi|294338336|emb|CBJ94375.1| Probable ribonucleotide reductase (small subunit) [Campylobacter
phage CPt10]
Length = 369
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/330 (20%), Positives = 132/330 (40%), Gaps = 19/330 (5%)
Query: 17 VNVDDKRMLNA---RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
++ + + S + +KY + W EV D A + N
Sbjct: 10 IDFTKEPLFFGTGKNSQRYDV--IKYPIFETLFKKMAGFDWQEDEVQCTKDQADF---NV 64
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL-LRQAFEEAVHSHTFQ 132
L + + R L +S+ ++ I ++NPE + Q FE + HS ++
Sbjct: 65 LNEAMKHSYTRVLNKLIFLDSIQGRGLLQTIGSIVTNPELEVCMTEWQRFEISRHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQT----LSSPSFTTGTKDADQEFLQD 188
+I+ S+ + ++F+ E+P + A+ + + ++ + + + +
Sbjct: 125 HILRSVYANPSKIFDESFEIPVLLELADSISKPYEEAFEAVTKYHLGLIDIEDVKVKVLN 184
Query: 189 LFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRDESLH---LNFGIDVINQ 244
+ + + EG+ FY+GFA I S+ M + Q I RDE+LH I ++++
Sbjct: 185 MLIEINILEGVRFYSGFATIWSMHYSQGLMERTGKILQLICRDENLHLAITQNLIKILSR 244
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRR 303
E + EA E + KG F+G+ + Y++++ N+R
Sbjct: 245 SPEEGFINAWNSIKDNITDRYLEAADQEFKWIDYLFSKGAFLGMTPELAKNYIKYLINKR 304
Query: 304 CHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
IG + +F + +NP PW+ I+ K
Sbjct: 305 LKAIGFKEVFAGFNKNPIPWVETYINYDKN 334
>gi|159184148|ref|NP_353105.2| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
tumefaciens str. C58]
gi|159139483|gb|AAK85890.2| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium
tumefaciens str. C58]
Length = 324
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/333 (18%), Positives = 119/333 (35%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W + L +E+ + R
Sbjct: 15 NWNRIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWGT---LKPEEQELTIRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + + + P L +F EAVH+ ++ I ++L + +
Sbjct: 69 TLLDTIQNGVGAVRLMPDSATPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDDAYR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + K+ ++ + V E FY+GF
Sbjct: 129 WSEENEFLQRKSAIIMREYDSGDPLKKKI---------------ASVFLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 174 PMFWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALDRLGEAQRQEIKDFAFDLLLE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y + VGL +Q++ + AN+ +G E LF NP +
Sbjct: 234 LYDNEAKYTEDLYDG--VGLT-EDVKQFLHYNANKALMNLGYEALFPAEACRVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323
>gi|169630485|ref|YP_001704134.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
abscessus ATCC 19977]
gi|169242452|emb|CAM63480.1| Probable ribonucleoside-diphosphate reductase beta subunit
[Mycobacterium abscessus]
Length = 324
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/319 (19%), Positives = 121/319 (37%), Gaps = 31/319 (9%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
E + N W+P +VP+ +D+ W + LTD E+ + R +++ ++
Sbjct: 26 EVWDRLTGNFWLPEKVPVSNDIQSWNT---LTDHEKQLTMRVFTGLTLLDTIQGTVGAVS 82
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
+ P AF E+VH+ ++ I ++L + F E P++ KA
Sbjct: 83 LIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTREIDDAFRWSEENPNLQRKAEI 142
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
++Y + V + E FY+GF + K+ A
Sbjct: 143 VMEYYRGDE---------------PLKRKVASTLLESFLFYSGFYLPMYWSSRAKLTNTA 187
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I+RDE++H + + E ++ + +L+E E Y +
Sbjct: 188 DMIRLIIRDEAVHGYYIGYKFQRGLERVDEAKRAEIKEYTYDLLYELYENETDYTEDLY- 246
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFET 338
VGL ++++++ AN+ +G E LF E NP + + + +FF
Sbjct: 247 -DEVGLT-EDVKKFLRYNANKALMNLGYEALFPREETDVNPAILSALSPNADENHDFFSG 304
Query: 339 RVTEYQQGAEL-----KWD 352
+ Y G + WD
Sbjct: 305 SGSSYVIGKAVNTEDEDWD 323
>gi|226365904|ref|YP_002783687.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
opacus B4]
gi|226244394|dbj|BAH54742.1| ribonucleoside-diphosphate reductase beta chain [Rhodococcus opacus
B4]
Length = 321
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 12 NWNRVQDEKDAEVWD---RLVGNFWLPEKVPVSNDIPSWGT---LTAQEKQLTMRVFTGL 65
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ P AF E+VH+ ++ I ++L + F
Sbjct: 66 TLLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTRDIDDAFR 125
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA + Y Q V + E FY+GF
Sbjct: 126 WSEENPNLQRKAEIVMDYYQGDE---------------PLKRKVASTLLESFLFYSGFYL 170
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + + + + +L E
Sbjct: 171 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEQLTEAERDDLKNYTFELLFE 230
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 231 LYDNEVDYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEGLFPKDETDVNPAILSA 287
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 288 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 320
>gi|183981661|ref|YP_001849952.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2
[Mycobacterium marinum M]
gi|183174987|gb|ACC40097.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2
[Mycobacterium marinum M]
Length = 324
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 15 NWNRVQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P L AF E+VH+ ++ I ++L + F
Sbjct: 69 TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L+Y + V + E FY+GF
Sbjct: 129 WSEENSNLQRKAEIVLEYYRGDD---------------PLKRKVASTLLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLAAADEARRTELKDYTYELLFE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTQDEDWD 323
>gi|118617484|ref|YP_905816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
ulcerans Agy99]
gi|118569594|gb|ABL04345.1| ribonucleoside-diphosphate reductase (beta chain) NrdF2
[Mycobacterium ulcerans Agy99]
Length = 324
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 124/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 15 NWNRVQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P L AF E+VH+ ++ I ++L + F
Sbjct: 69 TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L+Y + V + E FY+GF
Sbjct: 129 WSEENSNLQRKAEIVLEYYRGDD---------------PLKRKVASTLLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLAAADEARRTELKDYTYELLFE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATQDEDWD 323
>gi|296140644|ref|YP_003647887.1| ribonucleoside-diphosphate reductase [Tsukamurella paurometabola
DSM 20162]
gi|296028778|gb|ADG79548.1| Ribonucleoside-diphosphate reductase [Tsukamurella paurometabola
DSM 20162]
Length = 334
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 63/333 (18%), Positives = 123/333 (36%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P +VP+ +D+ W + LTD E+ + R
Sbjct: 25 NWNRVPDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTDYEKQLTMRVFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ + P L AF E+VH+ ++ I ++L + F
Sbjct: 79 TLLDTIQGTVGAVSLIPDATTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTREIDDAFR 138
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA + + + V + E FY+GF
Sbjct: 139 WSEENEQLQRKAQIVMDFYRGDD---------------PLKRKVASTLLESFLFYSGFYL 183
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 184 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLETESPQRREELKDYTFDLLME 243
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y VGL+ ++++++ AN+ +G E LF NP +
Sbjct: 244 LYANEEDYTESLY--DEVGLS-EDVKKFLRYNANKALMNLGYEALFPKDATDVNPAILSA 300
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 301 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 333
>gi|300776394|ref|ZP_07086252.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC
35910]
gi|300501904|gb|EFK33044.1| ribonucleoside-diphosphate reductase [Chryseobacterium gleum ATCC
35910]
Length = 371
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 66/320 (20%), Positives = 122/320 (38%), Gaps = 18/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y + + + W+ +EV D+ + S L E+ +K L A
Sbjct: 54 RVSYKPFEYPEVLQFVEAINKSFWVHSEVDFTADVQDFHS--QLEPHEKHAVKNALLAIA 111
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +Y HL PE A E HS + ++ LG ++ F
Sbjct: 112 QIEVSV-KTFWGNLYNHLPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDE--FLNVI 168
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E+P++ + + + +E++ L +F ++ E + ++ FA ILS
Sbjct: 169 EIPAVKGRIEFL--------GNALKHANSATPKEYVSALLLFSILVENVSLFSQFAIILS 220
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
R M ++ + DE +H N GI +IN+I+ E P L T + T++ E+
Sbjct: 221 FTRFKGFMKNVSNIIAWTSVDEQIHANAGIYLINKIREEQPDLLTDSDIEDIYTLVDESI 280
Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
E G ++ +M++ + +I ++ + T P W E
Sbjct: 281 AREGDILSWIFELGEIDNVSKEDLLNFMKYRVDDSLKKINMKTRYNITPEQYRPMVWFEE 340
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
+ +FF R +Y +
Sbjct: 341 EVFANSLDDFFAKRPVDYTK 360
>gi|15827930|ref|NP_302193.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
leprae TN]
gi|221230407|ref|YP_002503823.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
leprae Br4923]
gi|14195114|sp|Q9CBQ2|RIR2_MYCLE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|13093483|emb|CAC30684.1| ribonucleotide reductase small subunit [Mycobacterium leprae]
gi|219933514|emb|CAR71826.1| ribonucleotide reductase small subunit [Mycobacterium leprae
Br4923]
Length = 325
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 66/333 (19%), Positives = 125/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N L K W+ N W+P +VP+ +DL W + LT E+ + R
Sbjct: 16 NWNWLQDDKDAEVWD---RLTGNFWLPEKVPVSNDLPSWGT---LTASEKQLTMRVFTGL 69
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L E F
Sbjct: 70 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTAEIDEAFR 129
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA ++Y + V + E FY+GF
Sbjct: 130 WSEENNNLQRKAKIVMEYYRGDE---------------PLKRKVASTLLESFLFYSGFYL 174
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + E ++ + +L E
Sbjct: 175 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLVLVDDARRAELKEYTYELLFE 234
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 235 LYDNEVEYTQDLYDR--VGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 291
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 292 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 324
>gi|323359290|ref|YP_004225686.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum
StLB037]
gi|323275661|dbj|BAJ75806.1| ribonucleotide reductase, beta subunit [Microbacterium testaceum
StLB037]
Length = 324
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 58/327 (17%), Positives = 121/327 (37%), Gaps = 28/327 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + NN W+P +VP+ +D+ W + LT +E+ + R
Sbjct: 15 NWNRIQDDKDLEVWNRLVNNFWLPEKVPLSNDIQSWNT---LTPEEQTLTMRVFTGLTLL 71
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ +++ P AF E+VH+ ++ I ++L + E F
Sbjct: 72 DTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWST 131
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA + Y + V + E FY+GF +
Sbjct: 132 ENEFLQKKARIVMDYYRGDD---------------PLKRKVASTLLESFLFYSGFYLPMH 176
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + + + ++L+E
Sbjct: 177 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLETVDQARRDDIKDYTFSLLYELYD 236
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327
E+ Y VGL+ ++++ + AN+ +G E +F + NP +
Sbjct: 237 NEVGYTQSLY--DAVGLS-EDVKKFLHYNANKALMNLGYEAMFPSSVTNVNPAILSALSP 293
Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 294 NADENHDFFSGSGSSYVIGKAEATEDD 320
>gi|92112513|ref|YP_572441.1| ribonucleotide-diphosphate reductase subunit beta [Chromohalobacter
salexigens DSM 3043]
gi|91795603|gb|ABE57742.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Chromohalobacter salexigens DSM 3043]
Length = 326
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 63/322 (19%), Positives = 115/322 (35%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W N W+P +VP+ +D++ W + LT+ E+ + R
Sbjct: 17 NWNRLQDEKDLEVWN---RLTANFWLPEKVPLSNDVSAWNT---LTEQEQTLTIRVFTGL 70
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ + P +F E+VH+ ++ I ++L + +
Sbjct: 71 TLLDTIQGTIGAPTLIEDAVTPHEEAVFTNISFMESVHARSYSSIFSTLCATRDVDDAYR 130
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P + KA L + V V E FY+GF
Sbjct: 131 WSEENPHLQNKAELILNRYRMDD---------------PLMRKVASVFLESFLFYSGFYL 175
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + Q +E + + +L E
Sbjct: 176 PMYWASRGKLTNTADLIRLIIRDEAVHGYYIGYKFQQALARESAERQQEIKDATFDLLLE 235
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y VGL + ++ + AN+ +G EPLF NP +
Sbjct: 236 LYDNEVHYTESLYDD--VGLT-EEVKAFLHYNANKALMNLGYEPLFPGATEAVNPAILAA 292
Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
++ +FF + Y G
Sbjct: 293 LSPGAEENHDFFSGSGSSYVIG 314
>gi|296171158|ref|ZP_06852606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894294|gb|EFG74049.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 324
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 67/333 (20%), Positives = 124/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +DL W + LT E+ + R
Sbjct: 15 NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDLPSWAT---LTSGEKQLTMRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L + F
Sbjct: 69 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA +QY + V + E FY+GF
Sbjct: 129 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLALVDEAKRAELKDYTYELLFE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323
>gi|251797995|ref|YP_003012726.1| ribonucleotide-diphosphate reductase subunit beta [Paenibacillus
sp. JDR-2]
gi|247545621|gb|ACT02640.1| Ribonucleoside-diphosphate reductase [Paenibacillus sp. JDR-2]
Length = 318
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 61/309 (19%), Positives = 117/309 (37%), Gaps = 21/309 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+P+ DD W ++D ER + K LG +++ + I
Sbjct: 17 FWQQNVMQFWTDEEIPLSDDKMDWME---MSDTERTVYKNVLGGLTLLDTIQGGVGMPKI 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
H+ + + L + E +H+ ++ I T+L E +F + KA
Sbjct: 74 LEHVDGLQRKAVLAFMSMMEQIHAKSYSSIFTTLASTEEIDAIFQWVETNEQLQKKATLV 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+ Q + ++ L V E FY+GF L L KM E
Sbjct: 134 SSWYQGIE-----------TKQQLYKAMAASVFLESYLFYSGFFYPLYLAGQGKMTSSGE 182
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H + + ++ + + +++ +L+ E+ Y
Sbjct: 183 IIDLILRDESIHGLYVGVLAQELFNQFTPEEQAQLKEEVFALLNTLYENEVVYTDNLY-- 240
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL + Y+++ AN+ +G EP F NP + + + K+ +FF +
Sbjct: 241 SPIGL-QEDVKAYVRYNANKALMNLGFEPYFPEEPVNPIVF-NGISTHTKQHDFFSKKGN 298
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 299 GYVRTVHIE 307
>gi|99080359|ref|YP_612513.1| ribonucleotide-diphosphate reductase subunit beta [Ruegeria sp.
TM1040]
gi|99036639|gb|ABF63251.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Ruegeria sp. TM1040]
Length = 338
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 65/343 (18%), Positives = 125/343 (36%), Gaps = 32/343 (9%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
++ R + + N+L K W N W+P +VP+ +D+ W + LT D
Sbjct: 16 DMTQARAVPKAINWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSW---SQLTPD 69
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+ + R +++ + + P L +F EAVH+ ++ + ++
Sbjct: 70 EQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITPHEEAVLSNISFMEAVHARSYSSVFST 129
Query: 138 LGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
L E F E + AK+ L +SP + V
Sbjct: 130 LCQTTEVDEAFRWSAENEHLQAKSRLILGEYDATASP--------------LRKKIASVF 175
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
E FY+GF + ++ A+ + I+RDE++H + + K
Sbjct: 176 LESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRDEAIHGYYIGYKFQRGLERASEAERK 235
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
E + + +L + +E Y + +GL + ++ + AN+ +G E LF
Sbjct: 236 ELKDFAFGLLFDLYDIEARYTEQLYDG--LGLT-EDVKNFLHYNANKALQNLGFEALFPE 292
Query: 316 TE---NPFPWMSEVI-DLKKEKNFFETRVTEYQ--QGAELKWD 352
NP M+ + + +FF + Y + + D
Sbjct: 293 ETCRVNP-AIMAALSPGSDENHDFFSGSGSSYVIGKAVATEDD 334
>gi|240169547|ref|ZP_04748206.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
kansasii ATCC 12478]
Length = 320
Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats.
Identities = 65/330 (19%), Positives = 126/330 (38%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +D+ W + LT +E+ + R
Sbjct: 11 NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTANEKQLTMRVFTGL 64
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P L AF E+VH+ ++ I ++L + F
Sbjct: 65 TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 124
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA LQY + V + E FY+GF
Sbjct: 125 WSEENPNLQRKAEIVLQYYRGDE---------------PLKRKVASTLLESFLFYSGFYL 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + E + + +L E
Sbjct: 170 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDEVKRAELKDYTYELLFE 229
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 230 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 286
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKAVVTEDE 316
>gi|254819781|ref|ZP_05224782.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
intracellulare ATCC 13950]
Length = 322
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 70/333 (21%), Positives = 125/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +D A W++ LT E+ R
Sbjct: 13 NWNRLPDPKDAQVWD---RLTGNFWLPEKVPLSNDSASWQT---LTAQEQQTTVRVFTGL 66
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++ A +++ P L AF E+VH+ ++ I ++L + F+
Sbjct: 67 TLLDTTQATVGAVSMIADAVTPHEEAVLTNIAFMESVHAKSYSSIFSTLCSTRQIDDAFD 126
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
P + KA + Y + V+ E FY+GF
Sbjct: 127 WSERNPHLQRKAQIVVDYYRGDD---------------ALKRKAASVMLESFLFYSGFYL 171
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + E ++ + +L+
Sbjct: 172 PMYWSSRGKLTNTADIIRLIIRDEAVHGFYIGYKCQRGLAELSEPERSGHREYTYELLNA 231
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
EI YAH+ +G YM+F ANR +G EP+F ++ NP +
Sbjct: 232 LYTNEIDYAHDLYDG--LGWT-DDVLPYMRFNANRALANLGYEPMFGPSDCRVNPAVLSA 288
Query: 325 EVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
+ +FF + Y G+ + WD
Sbjct: 289 LDPGAGENHDFFSGSGSSYVIGSHQATEDADWD 321
>gi|38232564|gb|AAR15079.1| ribonucleotide reductase R2 subunit variant [Aedes albopictus]
Length = 219
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 22/208 (10%)
Query: 142 EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
+ LFN +P + KA+WAL + + Q + V + EG++F
Sbjct: 20 KRYLFNAIDNLPCVKKKADWALNWISS-------------KQANFGERVVAFAAVEGIFF 66
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
FA I L + M G+ + I RDE LH +F + + K Q++
Sbjct: 67 SGSFASIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLMFKYLVQ-------KPSQERV 119
Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
++ EA L+E + + +P +G+N QY++F+A+R ++G++ ++ T+NPF
Sbjct: 120 IEIIREAVLIEQEFLTKALPVDLLGMNCELMSQYIEFVADRLLLELGIDKIYN-TKNPFS 178
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+M E I L+ + NFFE +V EYQ+ +
Sbjct: 179 FM-EFISLEGKTNFFEKKVGEYQKWGVM 205
>gi|312883652|ref|ZP_07743377.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309368875|gb|EFP96402.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 323
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 68/331 (20%), Positives = 123/331 (37%), Gaps = 32/331 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P ++P+ +D+ WK LT+DE+++ R
Sbjct: 13 NWNRIQDNKDLEIWNRLTVNFWLPEKIPLSNDIQSWKQ---LTEDEQVLTTRVFTGLTLL 69
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + + P L AF EAVH+ ++ I ++L E F
Sbjct: 70 DTIQNTVGAPVLMKDARTPHEEAVLSNIAFMEAVHARSYSSIFSTLCTTPQIDEAFRWAE 129
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P + KA L S P + V E FY+GF +
Sbjct: 130 ENPLLQQKAKIILDDYLQDSGPLEKK--------------IASVFLESFLFYSGFYLPMH 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + E ++ + K+ ++L
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLGYQELDEARQEQLKDKAYSLLLSLYD 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327
+E Y + VGL + ++ + AN+ +G E LF NP M+ +
Sbjct: 236 IECQYTESLYDQ--VGLT-EDVKHFLHYNANKALMNLGFEALFPQELCNVNP-AIMAALS 291
Query: 328 -DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 292 PNSDENHDFFSGSGSSYVIGKAVVTEDEDWD 322
>gi|82492124|gb|ABB77921.1| ribonucleotide reductase beta chain [Environmental halophage 1
AAJ-2005]
Length = 358
Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats.
Identities = 70/349 (20%), Positives = 141/349 (40%), Gaps = 20/349 (5%)
Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+S E++ + D + + + L P +Y + + N++W+ E D
Sbjct: 17 NFMSEANKPERKDDTDSQSDIF--TARQHLKPYEYTDFLDYVDAVRNSYWVHDEFNFDGD 74
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ ++ T E+ IKR + A E IY + E + A E
Sbjct: 75 IQDYRVNT--TPAEQTTIKRTMLAIAQIEV-QVKTFWSDIYEDMPKAEVGNVGMTFAESE 131
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H + +++ LG+++ F EVP++ + + +Y + G+ + QE
Sbjct: 132 VRHMDAYSHLLDVLGIEDE--FEQITEVPAVQQRIEYLDEYLE--------MGSSENKQE 181
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ + +F E + ++ F + S + K GIA + ++E +H FG +++
Sbjct: 182 SVMGILMFSTFVEHVSLFSQFLIMTSFDKHEKKFKGIANAVEATSKEEQIHGLFGQELVE 241
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSCEQYMQFIANR 302
I+ ENP L+ +F + + +A E + G + L + +++ N+
Sbjct: 242 TIREENPDLFDDDFTDEIQDACQQAYEAESEILDWILEDGELDFLPREHIDAFLKDRFNQ 301
Query: 303 RCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQGAE 348
G++P+F E+ W E I + KE +FF R T Y + +
Sbjct: 302 SLDNAGVDPVFDPDEDVVDETRWFDEDIMMTKENDFFSKRSTTYNKHTQ 350
>gi|227876446|ref|ZP_03994558.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
mulieris ATCC 35243]
gi|269976014|ref|ZP_06183018.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
mulieris 28-1]
gi|306817405|ref|ZP_07451150.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
mulieris ATCC 35239]
gi|307700420|ref|ZP_07637459.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
mulieris FB024-16]
gi|227842987|gb|EEJ53184.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
mulieris ATCC 35243]
gi|269935842|gb|EEZ92372.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
mulieris 28-1]
gi|304649846|gb|EFM47126.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
mulieris ATCC 35239]
gi|307614405|gb|EFN93635.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
mulieris FB024-16]
Length = 322
Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats.
Identities = 61/323 (18%), Positives = 119/323 (36%), Gaps = 26/323 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P ++P+ +D+ WK+ L DE+LM R
Sbjct: 13 NWNDIEDEKDLEVWDRLTGNFWLPEKIPLSNDIPSWKT---LNADEKLMTNRVFTGLTLL 69
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ +++ P AF E+VH+ ++ I ++L E E F
Sbjct: 70 DTIQGTVGAVSLIPDSRTPHEEAVYTNIAFMESVHAKSYSSIFSTLLSTEEINESFQWSE 129
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ KA+ L Y + + E FY+GF +
Sbjct: 130 NNEFLQKKAHIVLDYYHGNDAEKRKV---------------ASTMLESFLFYSGFYAPMY 174
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + E+ +E + + ++L +
Sbjct: 175 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKFQVAMRESSSSRQEELRDYTYSLLTDLYD 234
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y +GL ++++ + AN+ +G E LF E NP +
Sbjct: 235 NEVLYTETLY--DTLGLT-EDVKKFLHYNANKALMNLGYEALFPPEEIDVNPAILAALSP 291
Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
++ +FF + Y G +
Sbjct: 292 AAEENHDFFSGSGSSYTIGTAEE 314
>gi|326381484|ref|ZP_08203178.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL
B-59395]
gi|326199731|gb|EGD56911.1| Ribonucleoside-diphosphate reductase [Gordonia neofelifaecis NRRL
B-59395]
Length = 333
Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats.
Identities = 64/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P +VP+ +D+ W + LTD E+ + R
Sbjct: 24 NWNRVQDDKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTDYEKTLTMRVFTGL 77
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L + E F
Sbjct: 78 TLLDTIQGTVGAISLIPDALTPHEEAVYTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFR 137
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA + Y + V + E FY+GF
Sbjct: 138 WSEENEYLQRKAQIVMDYYRGDD---------------PLKRKVASTLLESFLFYSGFYL 182
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 183 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKYQRGLEVQTPERRQELKDYTFELLFE 242
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y VGL+ ++++++ AN+ +G E +F E NP +
Sbjct: 243 LYDNETDYTEALY--DEVGLS-EDVKKFLRYNANKALMNLGYEAMFPKDETDVNPAILSA 299
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 300 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 332
>gi|325291517|ref|YP_004277381.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
sp. H13-3]
gi|325059370|gb|ADY63061.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
sp. H13-3]
Length = 324
Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats.
Identities = 61/333 (18%), Positives = 122/333 (36%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W + L +E+ + R
Sbjct: 15 NWNRIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWGT---LKPEEQTLTIRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + + + P L +F EAVH+ ++ I ++L + +
Sbjct: 69 TLLDTIQNGVGSVRLMADSATPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDDAYR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + K+ ++ + + + V V E FY+GF
Sbjct: 129 WSEENEFLQRKSALIMREYDSGN---------------PLKMKVASVFLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 174 PMFWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALERLGEAEKQEIKDFAFDLLLE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y + VGL +Q++ + AN+ +G E LF NP +
Sbjct: 234 LYDNEAKYTQDLYDG--VGLT-EDVKQFLHYNANKALMNLGYEALFPPEACRVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323
>gi|307944765|ref|ZP_07660103.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp.
TrichSKD4]
gi|307771979|gb|EFO31202.1| ribonucleoside-diphosphate reductase, beta subunit [Roseibium sp.
TrichSKD4]
Length = 329
Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats.
Identities = 67/334 (20%), Positives = 123/334 (36%), Gaps = 35/334 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W N W+P +VP+ +D+ W + L DE+ + R
Sbjct: 19 NWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSWAT---LHPDEQQLTIRVFTGL 72
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + P L AF EAVH+ ++ + ++L E F
Sbjct: 73 TLLDTIQNTVGAPTLMPDALTPHEEAVLTNIAFMEAVHARSYSSVFSTLCQTADVDEAFR 132
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + AK+ L SP V V E FY+GF
Sbjct: 133 WSEENEHLQAKSRLILDEYGAAGSP--------------LRKKVASVFLESFLFYSGFYL 178
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + +++ +E + + +++ +
Sbjct: 179 PMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRMQETLSEAERQEIKDFAFSLMFD 238
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
+E Y VGL + ++ + AN+ +G E LF + NP M+
Sbjct: 239 LYEIEGKYTESLYDG--VGLT-EDVKHFLHYNANKALMNLGYEALFPDSVCQVNP-AIMA 294
Query: 325 EVI-DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + + +FF + Y G + WD
Sbjct: 295 ALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 328
>gi|254471227|ref|ZP_05084629.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio
sp. JE062]
gi|211959373|gb|EEA94571.1| ribonucleoside-diphosphate reductase, beta subunit [Pseudovibrio
sp. JE062]
Length = 325
Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats.
Identities = 70/334 (20%), Positives = 125/334 (37%), Gaps = 35/334 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W +N W+P +VP+ +D+ W S LT +E+ + R
Sbjct: 15 NWNRLQDDKDLEIWN---RLTSNFWLPEKVPLSNDVQSWAS---LTPEEQQLTIRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A+ P L AF EAVH+ ++ + ++L + F
Sbjct: 69 TLLDTIQNTVGAPALMADAVTPHEEAVLTNIAFMEAVHARSYSSVFSTLCRTAEVDDAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + AK+ L+ SSP + V E FY+GF
Sbjct: 129 WSEENEFLQAKSRLILEEYNATSSPLKKK--------------IASVFLESFLFYSGFYL 174
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + E + + T+L +
Sbjct: 175 PMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLERLSEAERTEIKDFAFTLLFD 234
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
LE Y + +GL + ++ + N+ +G E LF T NP M+
Sbjct: 235 LYDLETKYTEDLY--DPLGLT-EDVKHFLHYNGNKALQNLGFEGLFPETICQVNP-AIMA 290
Query: 325 EVI-DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + + +FF + Y G + WD
Sbjct: 291 SLSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 324
>gi|254820788|ref|ZP_05225789.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
intracellulare ATCC 13950]
Length = 324
Score = 146 bits (367), Expect = 7e-33, Method: Composition-based stats.
Identities = 68/333 (20%), Positives = 125/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +DL W + LT E+ M R
Sbjct: 15 NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDLPSWGT---LTAHEKQMTMRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L + F
Sbjct: 69 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSNIFSTLCSTAEIDDAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ KA +QY + V + E FY+GF
Sbjct: 129 WSEENPNLQRKAEIVMQYYKGDE---------------PLKRKVASTLLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDARKQELKDYTYELLFE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + VGL ++++++ AN+ +G E LF E NP +
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVVTEDEDWD 323
>gi|227494314|ref|ZP_03924630.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
coleocanis DSM 15436]
gi|226832048|gb|EEH64431.1| ribonucleotide-diphosphate reductase subunit beta [Actinomyces
coleocanis DSM 15436]
Length = 322
Score = 146 bits (367), Expect = 7e-33, Method: Composition-based stats.
Identities = 63/336 (18%), Positives = 122/336 (36%), Gaps = 34/336 (10%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N+L K W+ N W+P ++P+ +D+ W + L +E+ M +
Sbjct: 10 EAINWNKLEDDKDLEVWD---RLTGNFWLPEKIPLSNDIPSWNT---LRPEEQDMTNKVF 63
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
++L +++ P L AF E+VH+ ++ I ++L + E
Sbjct: 64 TNLTLLDTLQGTVGAISLISDARTPHEEAVLTNIAFMESVHARSYSSIFSTLLSTQEINE 123
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F E + KA Y + E FY+G
Sbjct: 124 VFRWSEENEQVQRKAEIVNSYYVADDPLKKKV---------------ASTMLESFLFYSG 168
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F + K+ A+ + I+RDE++H + E+ +E + + +
Sbjct: 169 FYAPMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQLGVRESSEARQQELKDYTFDL 228
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFP 321
L+E E + + +GL ++++++ AN+ +G E LF NP
Sbjct: 229 LYELYDNEEQFTEDLY--DPLGLT-EDVKKFLRYNANKALMNLGYEALFPAESCDVNPAI 285
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
S + + +FF + Y G + WD
Sbjct: 286 LASLSPNADENHDFFSGSGSSYVIGDIEDTQDEDWD 321
>gi|256820037|ref|YP_003141316.1| ribonucleotide reductase [Capnocytophaga ochracea DSM 7271]
gi|315225453|ref|ZP_07867266.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea
F0287]
gi|256581620|gb|ACU92755.1| ribonucleotide reductase [Capnocytophaga ochracea DSM 7271]
gi|314944551|gb|EFS96587.1| ribonucleoside-diphosphate reductase [Capnocytophaga ochracea
F0287]
Length = 319
Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats.
Identities = 72/320 (22%), Positives = 120/320 (37%), Gaps = 23/320 (7%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y E + + W+ +EV D+ +KS LT E+ +KR L A
Sbjct: 7 RENYKPFEYPEVMEFVNAMHKSFWVHSEVEFTADIQDFKS--ELTPVEKEAVKRALLGIA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +Y PE A E HS + ++ LG + F
Sbjct: 65 QVEVSV-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLL 121
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
EVP ++N +Y + ++ + F ++ E ++ FA ILS
Sbjct: 122 EVPVFKERSNVLKEYL------------AKNRENAMERILFFTLIIENASLFSQFATILS 169
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
R + +A + DE LH N GI ++ +I ENP + K ++ + T +
Sbjct: 170 FTRFKGFLKNVANIIAWTSVDEQLHANAGIYILKKIFEENPEMKAKA-EEDATTFIRSYI 228
Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSE 325
LE +G + + YM++ + Q+GL F + P W E
Sbjct: 229 TLEDKMLDWIFEQGELEFFSKKDLSNYMRYRLDDSLTQLGLGKPFGISGEEAKPMMWFEE 288
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
+ + +FF R T Y +
Sbjct: 289 EVFSNELDDFFAKRPTAYTK 308
>gi|47566242|ref|ZP_00237270.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
G9241]
gi|47556795|gb|EAL15126.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
G9241]
Length = 322
Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats.
Identities = 75/309 (24%), Positives = 127/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKQEQVAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|194433043|ref|ZP_03065326.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
dysenteriae 1012]
gi|194418770|gb|EDX34856.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella
dysenteriae 1012]
gi|320180201|gb|EFW55137.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
ATCC 9905]
gi|332088601|gb|EGI93714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
dysenteriae 155-74]
Length = 319
Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats.
Identities = 62/326 (19%), Positives = 120/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKITDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + P +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKIPLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|52143985|ref|YP_082843.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
E33L]
gi|228984529|ref|ZP_04144706.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229155020|ref|ZP_04283134.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
ATCC 4342]
gi|51977454|gb|AAU19004.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
E33L]
gi|157955324|gb|ABW06037.1| NrdF [Bacillus thuringiensis serovar tochigiensis]
gi|228628578|gb|EEK85291.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
ATCC 4342]
gi|228775232|gb|EEM23621.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 322
Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats.
Identities = 75/309 (24%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|318606878|emb|CBY28376.1| ribonucleotide reductase of class Ib (aerobic),beta subunit
[Yersinia enterocolitica subsp. palearctica Y11]
Length = 323
Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats.
Identities = 61/330 (18%), Positives = 120/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W LT DE+ + R
Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSW---AKLTADEQQLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ + P +F EAVH+ ++ I ++L + E +
Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA+ LQ+ V E FY+GF +
Sbjct: 131 ENGPLQKKADIILQHYNNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
++ A+ + I+RDE++H + + + + +E + + +L +
Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKLDNNRRQEIKNFTFDLLQDLYD 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
EI Y VG ++++ + AN+ +G E LF ++ NP +
Sbjct: 236 NEIHYTESLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSP 292
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322
>gi|332162772|ref|YP_004299349.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325667002|gb|ADZ43646.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
Length = 323
Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats.
Identities = 61/330 (18%), Positives = 120/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W LT DE+ + R
Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSW---AKLTADEQQLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ + P +F EAVH+ ++ I ++L + E +
Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA+ LQ+ V E FY+GF +
Sbjct: 131 ENGPLQKKADIILQHYNNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
++ A+ + I+RDE++H + + + + +E + + +L +
Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKLDNNRRQEIKNFAFDLLQDLYD 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
EI Y VG ++++ + AN+ +G E LF ++ NP +
Sbjct: 236 NEIHYTESLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSP 292
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322
>gi|260426338|ref|ZP_05780317.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp.
SE45]
gi|260420830|gb|EEX14081.1| ribonucleoside-diphosphate reductase, beta subunit [Citreicella sp.
SE45]
Length = 324
Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats.
Identities = 69/330 (20%), Positives = 121/330 (36%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W N W+P +VP+ +D+ W + LT +E+ + R
Sbjct: 15 NWNRLQDDKDLEVWN---RLTVNFWLPEKVPLSNDVPSWAT---LTPEEQRLTIRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A+ P L AF EAVH+ ++ I ++L E F
Sbjct: 69 TLLDTIQNAVGAPAMMPDAQTPHEEAVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P + AKA L + P V V E FY+GF
Sbjct: 129 WSDENPHLQAKARAILGTYAPGADP--------------LKRKVASVFLESFLFYSGFYL 174
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 175 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRAMERETAERRQELKDYAFGLLFE 234
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
+E Y E +GL + ++ + AN+ +G E LF NP ++
Sbjct: 235 LYEIEGHYTEELYDD--LGLT-EEVKSFLHYNANKALQNLGFEALFPPEACEVNP-AILA 290
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 291 ALSPDSENHDFFSGSGSSYVIGRAVATEDD 320
>gi|308177564|ref|YP_003916970.1| ribonucleoside-diphosphate reductase subunit beta [Arthrobacter
arilaitensis Re117]
gi|307745027|emb|CBT75999.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter
arilaitensis Re117]
Length = 324
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 132/349 (37%), Gaps = 37/349 (10%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+++ + +K + N++ K W NN W+P +VP+ +D+ W +
Sbjct: 2 TEKIQLTNK---VEAINWNRIQDDKDVEVWN---RLVNNFWLPEKVPLSNDIQSWGT--- 52
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT+DE+L+ R ++L +++ P AF E+VH+ ++
Sbjct: 53 LTEDEKLLTMRVFTGLTLLDTLQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHAKSYSS 112
Query: 134 IITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
I ++L + E F E ++ KA Y +
Sbjct: 113 IFSTLASTKEIDEAFRWSTENVNLQKKAQIIESYYHGED---------------PLKRKI 157
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
+ E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 158 ASTLLESFLFYSGFYLPMHWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLENETE 217
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+E + + +++E E+ Y H+ VGL+ ++++ + AN+ +G E
Sbjct: 218 ERKQELKDYTFELMYELYENEVQYTHDLY--DPVGLS-EDVKKFLHYNANKALMNLGYEA 274
Query: 312 LFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK-----WD 352
+F +P + + + +FF + Y G + WD
Sbjct: 275 MFPSTVTDVSPAILAALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 323
>gi|238762669|ref|ZP_04623638.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
kristensenii ATCC 33638]
gi|238698974|gb|EEP91722.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
kristensenii ATCC 33638]
Length = 323
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 59/330 (17%), Positives = 119/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W LT +E+ + R
Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSW---AKLTAEEQQLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ + P +F EAVH+ ++ I ++L E +
Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCSTPDVDEAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ KAN L++ V E FY+GF +
Sbjct: 131 ENIALQKKANIILEHYNNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
++ A+ + I+RDE++H + + + +E + + +L +
Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDISRRQEIKNFAYNLLQDLYD 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y + VG ++++ + AN+ +G E LF + NP +
Sbjct: 236 NEVRYTADLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPADQANVNPAILAALSP 292
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322
>gi|30261453|ref|NP_843830.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
anthracis str. Ames]
gi|47526645|ref|YP_017994.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
anthracis str. 'Ames Ancestor']
gi|49184287|ref|YP_027539.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
anthracis str. Sterne]
gi|49477196|ref|YP_035577.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|65318723|ref|ZP_00391682.1| COG0208: Ribonucleotide reductase, beta subunit [Bacillus anthracis
str. A2012]
gi|118476922|ref|YP_894073.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
thuringiensis str. Al Hakam]
gi|165870361|ref|ZP_02215016.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. A0488]
gi|167634337|ref|ZP_02392658.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. A0442]
gi|167639338|ref|ZP_02397610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. A0193]
gi|170686782|ref|ZP_02878002.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. A0465]
gi|170706310|ref|ZP_02896771.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. A0389]
gi|177651561|ref|ZP_02934350.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. A0174]
gi|190568085|ref|ZP_03020995.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis Tsiankovskii-I]
gi|196035278|ref|ZP_03102683.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
W]
gi|196046555|ref|ZP_03113780.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
03BB108]
gi|218902561|ref|YP_002450395.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
AH820]
gi|225863317|ref|YP_002748695.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
03BB102]
gi|227815798|ref|YP_002815807.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. CDC 684]
gi|228914025|ref|ZP_04077647.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228932735|ref|ZP_04095607.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228945050|ref|ZP_04107411.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|229090407|ref|ZP_04221650.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
Rock3-42]
gi|229120993|ref|ZP_04250235.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
95/8201]
gi|229183646|ref|ZP_04310869.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
BGSC 6E1]
gi|229602752|ref|YP_002865867.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. A0248]
gi|254682483|ref|ZP_05146344.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
anthracis str. CNEVA-9066]
gi|254726146|ref|ZP_05187928.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
anthracis str. A1055]
gi|254733899|ref|ZP_05191613.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
anthracis str. Western North America USA6153]
gi|254740411|ref|ZP_05198102.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
anthracis str. Kruger B]
gi|254753802|ref|ZP_05205837.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
anthracis str. Vollum]
gi|254758897|ref|ZP_05210924.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
anthracis str. Australia 94]
gi|301052993|ref|YP_003791204.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
anthracis CI]
gi|30255307|gb|AAP25316.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. Ames]
gi|47501793|gb|AAT30469.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. 'Ames Ancestor']
gi|49178214|gb|AAT53590.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. Sterne]
gi|49328752|gb|AAT59398.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|72414680|emb|CAG28950.1| ribonucleoside-diphosphate reductase class Ib beta chain [Bacillus
anthracis]
gi|118416147|gb|ABK84566.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Bacillus thuringiensis str. Al Hakam]
gi|157955314|gb|ABW06029.1| NrdF [Bacillus thuringiensis serovar finitimus]
gi|164713856|gb|EDR19378.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. A0488]
gi|167512777|gb|EDR88151.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. A0193]
gi|167530225|gb|EDR92951.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. A0442]
gi|170128844|gb|EDS97710.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. A0389]
gi|170669305|gb|EDT20048.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. A0465]
gi|172082839|gb|EDT67902.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. A0174]
gi|190560819|gb|EDV14794.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis Tsiankovskii-I]
gi|195991955|gb|EDX55918.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
W]
gi|196022739|gb|EDX61421.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
03BB108]
gi|218537212|gb|ACK89610.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
AH820]
gi|225785957|gb|ACO26174.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
03BB102]
gi|227004217|gb|ACP13960.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. CDC 684]
gi|228599889|gb|EEK57486.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
BGSC 6E1]
gi|228662653|gb|EEL18251.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
95/8201]
gi|228692990|gb|EEL46708.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
Rock3-42]
gi|228814719|gb|EEM60979.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228826940|gb|EEM72702.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228845630|gb|EEM90659.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|229267160|gb|ACQ48797.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
anthracis str. A0248]
gi|300375162|gb|ADK04066.1| ribonucleotide-diphosphate reductase beta subunit [Bacillus cereus
biovar anthracis str. CI]
gi|324325470|gb|ADY20730.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 322
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 75/309 (24%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|114766102|ref|ZP_01445111.1| ribonucleoside-diphosphate reductase, beta subunit protein
[Pelagibaca bermudensis HTCC2601]
gi|114541657|gb|EAU44698.1| ribonucleoside-diphosphate reductase, beta subunit protein
[Roseovarius sp. HTCC2601]
Length = 326
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 69/330 (20%), Positives = 124/330 (37%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W N W+P +VP+ +D+ W + LT++ER + R
Sbjct: 17 NWNRLQDEKDLEVWN---RLTVNFWLPEKVPLSNDVQSWAT---LTEEERQLTIRVFTGL 70
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ + A+ P L AF EAVH+ ++ I ++L E F
Sbjct: 71 TLLDTIQNSVGAPAMMPDCLTPHEESVLTNIAFMEAVHARSYSSIFSTLCSTREVDEAFR 130
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P + AKA L+ + P + V E FY+GF
Sbjct: 131 WSDENPHLQAKARAVLETYAPEADP--------------LKRKIASVFLESFLFYSGFYL 176
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 177 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLELESPERRQELKDYAFGLLFE 236
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
+E Y E +GL + ++ + AN+ +G E LF NP ++
Sbjct: 237 LYDIEARYTEELYDG--IGLT-EEVKAFLHYNANKALQNLGFEALFPPEAAEVNP-AILA 292
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 293 ALSPDSENHDFFSGSGSSYVIGRAVATEDD 322
>gi|261343568|ref|ZP_05971213.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
rustigianii DSM 4541]
gi|282568717|gb|EFB74252.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
rustigianii DSM 4541]
Length = 323
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 62/330 (18%), Positives = 115/330 (34%), Gaps = 34/330 (10%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 14 NWNRIQDDKDLEVWNRLTTNFWLPEKVPLSNDINSWNT---LTATEKKLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + P L +F EAVH+ ++ I ++L E +
Sbjct: 71 DTIQNTVGAPCLMADAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTPDVDEAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ KA L Y V V E FY+GF +
Sbjct: 131 ENSALQNKAKIILSYY---------------CDSHPLKKKVASVFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + E ++ + ++L +
Sbjct: 176 WSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLATYNEQQQNEIKEFTFSLLFDLYE 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI--- 327
EI Y E VG + + ++ + AN+ +G E LF +S I
Sbjct: 236 NEIKYTQELY--DSVGWS-EDVKSFLHYNANKALMNLGYEALFPEA---ITQVSPEILSA 289
Query: 328 ---DLKKEKNFFETRVTEYQ--QGAELKWD 352
D + +FF + Y + + D
Sbjct: 290 LSPDANENHDFFSGSGSSYVIGKAVSTEDD 319
>gi|228926484|ref|ZP_04089556.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228833308|gb|EEM78873.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
Length = 322
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 76/309 (24%), Positives = 129/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AYA E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYAEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|313206313|ref|YP_004045490.1| ribonucleotide reductase [Riemerella anatipestifer DSM 15868]
gi|312445629|gb|ADQ81984.1| ribonucleotide reductase [Riemerella anatipestifer DSM 15868]
gi|315023179|gb|EFT36190.1| ribonucleotide reductase [Riemerella anatipestifer RA-YM]
gi|325336242|gb|ADZ12516.1| ribonucleoside-diphosphate reductase beta chain [Riemerella
anatipestifer RA-GD]
Length = 324
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 71/320 (22%), Positives = 122/320 (38%), Gaps = 18/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y + + + W+ +EV D+ + S L E+ +K L A
Sbjct: 7 RINYKPFEYPEVMQYIEAINKSFWVHSEVDFTADIQDFHS--QLEPHEKNAVKNALLAIA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +Y HL PE A E HS + ++ LG + F
Sbjct: 65 QIEVSV-KTFWGNLYNHLPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNNE--FLNVI 121
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P+I + ++ +E++ L +F ++ E + ++ FA ILS
Sbjct: 122 ENPAIRKRIDFLT--------DVLRNSNSSTPKEYVSSLLLFSILIENVSLFSQFAIILS 173
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
R M ++ + DE +H N GI +IN+IK E P L +E + ++ +
Sbjct: 174 FTRFKGYMKNVSNIIAWTSVDEQIHANAGIYIINKIKEEQPELLQEEDIEAIYNIVKTSV 233
Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
LE G L+ +M++ + +IG+ +F TE P W E
Sbjct: 234 ELEAEILDWIFEMGDLDHLSKKQLLSFMKYRIDDSLKRIGMASMFNITEEEYKPMVWFEE 293
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
+ +FF R +Y +
Sbjct: 294 EVFANSLDDFFAKRPVDYTK 313
>gi|184201049|ref|YP_001855256.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria
rhizophila DC2201]
gi|183581279|dbj|BAG29750.1| ribonucleoside-diphosphate reductase beta subunit [Kocuria
rhizophila DC2201]
Length = 326
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 63/342 (18%), Positives = 128/342 (37%), Gaps = 46/342 (13%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ K W+ +N W+P +VP+ +D+ WK+ LT +E+ + +
Sbjct: 14 EAINWNRVQDEKDTEVWD---RLTSNFWLPEKVPLSNDVQSWKT---LTAEEQDLTMKVF 67
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGE 144
+++ +++ AF E+VH+ ++ I ++L E
Sbjct: 68 TGLTLLDTIQGTVGAVSLIPDAKTLHEEAVYTNIAFMESVHAKSYSSIFSTLSSMKQIDE 127
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
F +E + KA+ L+Y + + E FY+G
Sbjct: 128 AFRWSKENEHLQRKADIVLRYYKGDDPLKKKV---------------ASTLLESFLFYSG 172
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F + K+ A+ + I+RDE++H + + ++ +E + + +
Sbjct: 173 FYLPMYFSSHAKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLLQESPQRQQELKDYTYDL 232
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
L E E+AYA VG ++++ + AN+ + +G E LF M+
Sbjct: 233 LDELYENEVAYAEALY--DSVGWT-EDVKKFLHYNANKALNNLGYEALFPRE------MT 283
Query: 325 EVI---------DLKKEKNFFETRVTEYQQGAELK-----WD 352
+V + + +FF + Y G + WD
Sbjct: 284 DVSPAILSSLSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 325
>gi|238750475|ref|ZP_04611976.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei
ATCC 43380]
gi|238711406|gb|EEQ03623.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia rohdei
ATCC 43380]
Length = 323
Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 60/330 (18%), Positives = 121/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W + LT +E+ + R
Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ + P +F EAVH+ ++ I ++L + + +
Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA+ LQ+ V E FY+GF +
Sbjct: 131 ENGPLQKKADIILQHYHNEDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + + +E + + +L +
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNNRRQEIKNFAFDLLQDLYD 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y + K VG + ++ + AN+ +G E LF + NP +
Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKSFLHYNANKALMNLGYEALFPANQAEVNPAILAALSP 292
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVITEDEDWD 322
>gi|123441277|ref|YP_001005264.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|122088238|emb|CAL11027.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia
enterocolitica subsp. enterocolitica 8081]
Length = 323
Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 61/330 (18%), Positives = 120/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W LT DE+ + R
Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSW---AKLTADEQQLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ + P +F EAVH+ ++ I ++L + E +
Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA+ LQ+ V E FY+GF +
Sbjct: 131 ENGPLQKKADIILQHYNNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
++ A+ + I+RDE++H + + + + +E + + +L +
Sbjct: 176 WSSRARLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNNRRQEIKNFAFDLLQDLYD 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
EI Y VG ++++ + AN+ +G E LF ++ NP +
Sbjct: 236 NEIHYTESLYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSP 292
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322
>gi|15841457|ref|NP_336494.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis CDC1551]
gi|57116932|ref|YP_177853.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis H37Rv]
gi|148661790|ref|YP_001283313.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis H37Ra]
gi|148823195|ref|YP_001287949.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis F11]
gi|167970496|ref|ZP_02552773.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis H37Ra]
gi|215404217|ref|ZP_03416398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 02_1987]
gi|215411671|ref|ZP_03420467.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 94_M4241A]
gi|215427336|ref|ZP_03425255.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T92]
gi|215430897|ref|ZP_03428816.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis EAS054]
gi|215446189|ref|ZP_03432941.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T85]
gi|218753694|ref|ZP_03532490.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis GM 1503]
gi|219557941|ref|ZP_03537017.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T17]
gi|253798971|ref|YP_003031972.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis KZN 1435]
gi|254232151|ref|ZP_04925478.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
[Mycobacterium tuberculosis C]
gi|254364798|ref|ZP_04980844.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
[Mycobacterium tuberculosis str. Haarlem]
gi|254551002|ref|ZP_05141449.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260186953|ref|ZP_05764427.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis CPHL_A]
gi|260201080|ref|ZP_05768571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T46]
gi|289443470|ref|ZP_06433214.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
tuberculosis T46]
gi|289447597|ref|ZP_06437341.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis CPHL_A]
gi|289554242|ref|ZP_06443452.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis KZN 605]
gi|289570077|ref|ZP_06450304.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis T17]
gi|289746076|ref|ZP_06505454.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 02_1987]
gi|289750559|ref|ZP_06509937.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis T92]
gi|289754082|ref|ZP_06513460.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis EAS054]
gi|289758093|ref|ZP_06517471.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T85]
gi|289762136|ref|ZP_06521514.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
[Mycobacterium tuberculosis GM 1503]
gi|294996911|ref|ZP_06802602.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 210]
gi|297634550|ref|ZP_06952330.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis KZN 4207]
gi|297731538|ref|ZP_06960656.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis KZN R506]
gi|298525478|ref|ZP_07012887.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 94_M4241A]
gi|306776213|ref|ZP_07414550.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu001]
gi|306779994|ref|ZP_07418331.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu002]
gi|306784744|ref|ZP_07423066.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu003]
gi|306789101|ref|ZP_07427423.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu004]
gi|306793436|ref|ZP_07431738.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu005]
gi|306797819|ref|ZP_07436121.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu006]
gi|306803700|ref|ZP_07440368.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu008]
gi|306808274|ref|ZP_07444942.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu007]
gi|306968097|ref|ZP_07480758.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu009]
gi|306972322|ref|ZP_07484983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu010]
gi|307080033|ref|ZP_07489203.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu011]
gi|307084607|ref|ZP_07493720.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu012]
gi|313658871|ref|ZP_07815751.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis KZN V2475]
gi|1710397|sp|Q10840|RIR2A_MYCTU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta
nrdF1; AltName: Full=Ribonucleotide reductase R2-1 small
subunit; AltName: Full=Ribonucleotide reductase small
subunit 1
gi|13881697|gb|AAK46308.1| ribonucleoside-diphosphate reductase R2-1, beta subunit
[Mycobacterium tuberculosis CDC1551]
gi|38490297|emb|CAE55444.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1
(RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
[Mycobacterium tuberculosis H37Rv]
gi|124601210|gb|EAY60220.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
[Mycobacterium tuberculosis C]
gi|134150312|gb|EBA42357.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
[Mycobacterium tuberculosis str. Haarlem]
gi|148505942|gb|ABQ73751.1| ribonucleoside-diphosphate reductase subunit beta NrdF1
[Mycobacterium tuberculosis H37Ra]
gi|148721722|gb|ABR06347.1| ribonucleoside-diphosphate reductase beta subunit nrdF1
[Mycobacterium tuberculosis F11]
gi|253320474|gb|ACT25077.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis KZN 1435]
gi|289416389|gb|EFD13629.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
tuberculosis T46]
gi|289420555|gb|EFD17756.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis CPHL_A]
gi|289438874|gb|EFD21367.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis KZN 605]
gi|289543831|gb|EFD47479.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis T17]
gi|289686604|gb|EFD54092.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 02_1987]
gi|289691146|gb|EFD58575.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis T92]
gi|289694669|gb|EFD62098.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis EAS054]
gi|289709642|gb|EFD73658.1| ribonucleoside-diphosphate reductase (beta chain) nrdF1
[Mycobacterium tuberculosis GM 1503]
gi|289713657|gb|EFD77669.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T85]
gi|298495272|gb|EFI30566.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 94_M4241A]
gi|308215325|gb|EFO74724.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu001]
gi|308327098|gb|EFP15949.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu002]
gi|308330477|gb|EFP19328.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu003]
gi|308334311|gb|EFP23162.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu004]
gi|308338113|gb|EFP26964.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu005]
gi|308341805|gb|EFP30656.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu006]
gi|308345291|gb|EFP34142.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu007]
gi|308349595|gb|EFP38446.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu008]
gi|308354222|gb|EFP43073.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu009]
gi|308358200|gb|EFP47051.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu010]
gi|308362132|gb|EFP50983.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu011]
gi|308365786|gb|EFP54637.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis SUMu012]
gi|323719468|gb|EGB28595.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis CDC1551A]
gi|326903590|gb|EGE50523.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis W-148]
gi|328458726|gb|AEB04149.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis KZN 4207]
Length = 322
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 69/333 (20%), Positives = 126/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+LL K WE N W+P ++P+ +DLA W++ L+ E+ R
Sbjct: 13 NWNRLLDAKDLQVWE---RLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGL 66
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++ A +A+ P L AF E+VH+ ++ I ++L + + F+
Sbjct: 67 TLLDTAQATVGAVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFD 126
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ P + KA + Y + V+ E FY+GF
Sbjct: 127 WSEQNPYLQRKAQIIVDYYRGDD---------------ALKRKASSVMLESFLFYSGFYL 171
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + + ++ + +LH
Sbjct: 172 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHT 231
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
EI YAH+ +G YM++ AN+ +G +P F NP +
Sbjct: 232 LYANEIDYAHDLY--DELGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAA 288
Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
+ +FF + Y G + WD
Sbjct: 289 LDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 321
>gi|319408170|emb|CBI81823.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
schoenbuchensis R1]
Length = 324
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 64/342 (18%), Positives = 122/342 (35%), Gaps = 31/342 (9%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ K + + N+L K W N W+P +VP+ +D+ W S LT++
Sbjct: 3 RISTKNPVICAVNWNKLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTEE 56
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
ER + R +++ +++ L AF EAVH+ ++ I ++
Sbjct: 57 ERKLTIRVFTGLTLLDTVQNTVGAISLMADAITEHEEAVLTNIAFMEAVHARSYSSIFST 116
Query: 138 LGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
L + F E ++ KA L+ + +
Sbjct: 117 LCSTAEVDDAFRWSEENANLQKKATLVLERYEASDPLKKKI---------------ASTL 161
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
E FY+GF + K+ A+ + I+RDE++H + + +
Sbjct: 162 LESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYVGYKFQLGFAKLDEAKKQ 221
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
E + + ML + +E Y + +GL + ++ + AN+ +G EPLF
Sbjct: 222 EIKDFAFNMLFDLYSIECKYTEDLY--DAIGLT-EDVKVFIHYNANKALMNLGFEPLFPP 278
Query: 316 T---ENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
NP + + + +FF + Y + D
Sbjct: 279 EVCRVNPAILAALSPNSDENHDFFSGSGSSYVIGKAVATTDD 320
>gi|283457964|ref|YP_003362570.1| ribonucleotide reductase subunit beta [Rothia mucilaginosa DY-18]
gi|283133985|dbj|BAI64750.1| ribonucleotide reductase, beta subunit [Rothia mucilaginosa DY-18]
Length = 325
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/336 (19%), Positives = 127/336 (37%), Gaps = 34/336 (10%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ K W+ N W+P +VP+ +D+ WK+ LT++E+ + R
Sbjct: 13 EAINWNRIEDEKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVF 66
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
+++ +++ AF E+VH+ ++ I ++L + E
Sbjct: 67 TGLTLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDE 126
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
F E + KA L Y + E FY+G
Sbjct: 127 AFRWASENEHLQKKAKIVLSYYTGDDPLKKKV---------------ASTLLESFLFYSG 171
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F + K+ A+ + I+RDE++H + Q + E ++ + +
Sbjct: 172 FYLPMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKFQQGLAKESAERQAELKEYTFNL 231
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWM 323
L+E E+AY H VG + ++++ + AN+ +G EP+F + N P +
Sbjct: 232 LYELYENEVAYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEPMFPASVTNVSPAI 288
Query: 324 SEVI--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + + +FF + Y G + WD
Sbjct: 289 LSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324
>gi|31793160|ref|NP_855653.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
bovis AF2122/97]
gi|224990358|ref|YP_002645045.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
bovis BCG str. Tokyo 172]
gi|260205258|ref|ZP_05772749.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis K85]
gi|289574653|ref|ZP_06454880.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis K85]
gi|31618751|emb|CAD94705.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDF1
(RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT) (R2F PROTEIN)
[Mycobacterium bovis AF2122/97]
gi|224773471|dbj|BAH26277.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
bovis BCG str. Tokyo 172]
gi|289539084|gb|EFD43662.1| ribonucleoside-diphosphate reductase subunit beta nrdF1
[Mycobacterium tuberculosis K85]
Length = 322
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 69/333 (20%), Positives = 126/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+LL K WE N W+P ++P+ +DLA W++ L+ E+ R
Sbjct: 13 NWNRLLDAKDLQVWE---RLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGL 66
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++ A +A+ P L AF E+VH+ ++ I ++L + + F+
Sbjct: 67 TLLDTAQATVGAVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFD 126
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ P + KA + Y + V+ E FY+GF
Sbjct: 127 WSEQNPYLQRKAQIIVDYYRGDD---------------ALKRKASSVMLESFLFYSGFYL 171
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + + ++ + +LH
Sbjct: 172 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHT 231
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
EI YAH+ +G YM++ AN+ +G +P F NP +
Sbjct: 232 LYANEIDYAHDLY--DELGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAA 288
Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
+ +FF + Y G + WD
Sbjct: 289 LDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 321
>gi|228990454|ref|ZP_04150419.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
pseudomycoides DSM 12442]
gi|228996556|ref|ZP_04156195.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
Rock3-17]
gi|229004206|ref|ZP_04162007.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
Rock1-4]
gi|228757067|gb|EEM06311.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
Rock1-4]
gi|228763188|gb|EEM12096.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
Rock3-17]
gi|228768980|gb|EEM17578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
pseudomycoides DSM 12442]
Length = 322
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 75/309 (24%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E+++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIVYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E E+F P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFEWVDSHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TGYYRRLLKPQVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAEFSAEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPRFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|229102053|ref|ZP_04232765.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
Rock3-28]
gi|228681373|gb|EEL35538.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
Rock3-28]
Length = 322
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TRYYRRLLKPQVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + Q+ E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFAELSAEDQQEVQKETQVLLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VDDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|229084444|ref|ZP_04216723.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
Rock3-44]
gi|228698872|gb|EEL51578.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
Rock3-44]
Length = 322
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 127/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSREEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDSHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P V V E FY+GF L L K+ E
Sbjct: 134 TGYYRRLLKPQVAKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTDEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEEVNRFVRYNANKGLMNLGLEPRFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|324111310|gb|EGC05292.1| ribonucleotide reductase [Escherichia fergusonii B253]
Length = 319
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYT 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E S+ KA Q+ + V E FY+GF
Sbjct: 124 WSEENASLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|255327220|ref|ZP_05368295.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
mucilaginosa ATCC 25296]
gi|255295838|gb|EET75180.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
mucilaginosa ATCC 25296]
Length = 325
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/336 (19%), Positives = 127/336 (37%), Gaps = 34/336 (10%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ K W+ N W+P +VP+ +D+ WK+ LT++E+ + R
Sbjct: 13 EAINWNRIEDEKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT---LTEEEKQLTMRVF 66
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
+++ +++ AF E+VH+ ++ I ++L + E
Sbjct: 67 TGLTLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSSIFSTLASTKEIDE 126
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
F E + KA L Y + E FY+G
Sbjct: 127 AFRWAAENEHLQKKAKIVLSYYTGDDPLKKKV---------------ASTLLESFLFYSG 171
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F + K+ A+ + I+RDE++H + + + E ++ + +
Sbjct: 172 FYLPMYWSSHAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKESAERQAELKEYTFNL 231
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWM 323
L+E E+AY H VG + ++++ + AN+ +G EP+F T N P +
Sbjct: 232 LYELYENEVAYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEPMFPATVTNVSPAI 288
Query: 324 SEVI--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + + +FF + Y G + WD
Sbjct: 289 LSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324
>gi|203454817|ref|YP_002225133.1| gp256 [Mycobacterium phage Myrna]
gi|197311865|gb|ACH62223.1| gp256 [Mycobacterium phage Myrna]
Length = 322
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 62/338 (18%), Positives = 123/338 (36%), Gaps = 31/338 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ L + N+++ K W NN W+P ++P+ +D+ W LT++ERL+
Sbjct: 5 EHTLTRAINWNRVIDEKDAEVWN---RLTNNFWLPEKIPVSNDVQSWHQ---LTEEERLI 58
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
R +++ +++ P AF E+VH+ ++ I ++L
Sbjct: 59 TMRVFTGLTMLDTIQGTVGAVSLIPDAITPHEEAVYTNIAFMESVHARSYSNIFSTLCST 118
Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
+ F E ++ KA L Y V + EG
Sbjct: 119 KEIDAAFRWSEENANLQKKAEIVLSYYNGDD---------------PLKRKVASTLLEGF 163
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
FY+GF + K+ A+ + I+RDE++H + + + +E +
Sbjct: 164 LFYSGFYLPMFWSSRGKLTNTADMIRLIIRDEAVHGYYIGYKFQKGLEKETKARQQELKD 223
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYT 316
+ +L E E Y + G ++++++ N+ +G + LF
Sbjct: 224 YTYELLFELFDNEQEYTQDLY--DATGQT-EDVKKFLRYNGNKALQNLGYDALFSRSDCD 280
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEY--QQGAELKWD 352
NP + + +FF + Y +G + D
Sbjct: 281 VNPAILSALSPGGDENHDFFSGSGSTYVMAKGVVTEDD 318
>gi|86148040|ref|ZP_01066342.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
MED222]
gi|85834173|gb|EAQ52329.1| ribonucleotide-diphosphate reductase beta subunit [Vibrio sp.
MED222]
Length = 320
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/331 (19%), Positives = 119/331 (35%), Gaps = 32/331 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+++ K W N W+P +VP+ +D+ WK LT++E+ + R
Sbjct: 10 NWNRMIDGKDLEIWN---RLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A+ P L AF EAVH+ ++ + ++L E F
Sbjct: 64 TLLDTIQNTVGAPALMEDARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFR 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P + KA L P V V E FY+GF
Sbjct: 124 WAEENPLLQKKAQIILDDYLAEGDPLKKK--------------VASVFLESFLFYSGFYL 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + ++ +++
Sbjct: 170 PMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAYQSLSEEEQARVKDEAYSLMFS 229
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
+E Y VGL + ++ + AN+ +G E LF NP M+
Sbjct: 230 LYEIETQYTESLY--DPVGLT-EDVKHFLHYNANKALMNLGFEALFPDELCQVNP-AIMA 285
Query: 325 EVI-DLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + + +FF + Y + + D
Sbjct: 286 ALSPNADENHDFFSGSGSSYVIGKAVATEDD 316
>gi|218690804|ref|YP_002399016.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
ED1a]
gi|218428368|emb|CAR09297.2| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
[Escherichia coli ED1a]
Length = 319
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 59/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + + + ++ + AN+ +G EPLF NP + +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAIFAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|212712928|ref|ZP_03321056.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM
30120]
gi|212684406|gb|EEB43934.1| hypothetical protein PROVALCAL_04026 [Providencia alcalifaciens DSM
30120]
Length = 323
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 62/330 (18%), Positives = 116/330 (35%), Gaps = 34/330 (10%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P ++P+ +D W + L DE+ + R
Sbjct: 14 NWNRIQDDKDLEVWNRLTSNFWLPEKIPLSNDTVSWNT---LKTDEQQLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
+++ + P L +F EAVH+ ++ I ++L D E +
Sbjct: 71 DTIQNTVGAPCLMEDAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDEAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ KA L Y V V E FY+GF +
Sbjct: 131 ENTALQNKAKIILSYY---------------CDSHPLKKKVASVFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + E + + ++L +
Sbjct: 176 WSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKALAHYSEQERNEIKDFTFSLLLDLYE 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI--- 327
EI Y E VG + + ++ + AN+ +G E LF + +S I
Sbjct: 236 NEIKYTQELYDG--VGWS-EDVKSFLHYNANKALMNLGYEALFPDS---ITQVSPEILSA 289
Query: 328 ---DLKKEKNFFETRVTEYQ--QGAELKWD 352
D + +FF + Y + + D
Sbjct: 290 LSPDANENHDFFSGSGSSYVIGKAVSTEDD 319
>gi|229095937|ref|ZP_04226913.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
Rock3-29]
gi|229114891|ref|ZP_04244304.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
Rock1-3]
gi|228668583|gb|EEL24012.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
Rock1-3]
gi|228687447|gb|EEL41349.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
Rock3-29]
Length = 322
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TRYYRRLLKPQVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + Q+ E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VDDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|146301802|ref|YP_001196393.1| ribonucleotide reductase [Flavobacterium johnsoniae UW101]
gi|146156220|gb|ABQ07074.1| ribonucleotide reductase [Flavobacterium johnsoniae UW101]
Length = 324
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 68/320 (21%), Positives = 124/320 (38%), Gaps = 18/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y + + +W+ TEV D + L+ E+ +K +L A
Sbjct: 7 RVNYKPFEYPEVLQFTEAINKAYWVHTEVDFTADTQDFH--AHLSLAEKTAVKNSLLAIA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E + IY H PE A E HS + ++ LG ++ F
Sbjct: 65 QIEV-AVKSFWGNIYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDE--FEKLL 121
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+VP I + ++ LS+ T ++D +++ L +F ++ E + ++ FA +LS
Sbjct: 122 DVPVIRRRVDY-------LSNVLKDTKSQDNR-KYMVSLILFSILIENVSLFSQFAILLS 173
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
R M ++ + DE +H N GI +IN+I+ E P + +E R + ++
Sbjct: 174 FTRFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDYFDEETLALVRETVKDSI 233
Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
+E +G + +M+F + QI + +F W E
Sbjct: 234 AVESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIPVIFDVKVEDYKALAWFEE 293
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
+ +FF R EY +
Sbjct: 294 EVFANSLDDFFAKRPVEYTK 313
>gi|152974880|ref|YP_001374397.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
subsp. cytotoxis NVH 391-98]
gi|152023632|gb|ABS21402.1| Ribonucleoside-diphosphate reductase [Bacillus cytotoxicus NVH
391-98]
Length = 322
Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats.
Identities = 73/309 (23%), Positives = 127/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E+ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQTTYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
H+ N + + L E VH+ ++ +I T+L +E E+F+ + P + KA
Sbjct: 74 LVHIENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDQHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TGYYRKLLKPQVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E ++ Q++++ +L E +E AY E
Sbjct: 187 IINLIIRDESIHGVFVGLLAQQIFAELSAEEQEDVQKETQDLLMELYEIETAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 ASIGL-VGEVNRFVRYNANKGLMNLGLEPRFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|225434341|ref|XP_002276454.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 841
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 62/268 (23%), Positives = 106/268 (39%), Gaps = 10/268 (3%)
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
K +L +LV N A RH + + + I D+
Sbjct: 568 KMHLYRLRPVATLVTNATNNARVRHAIINYLKSSMCVRVGVVGGFVGCCFVISDCSSTDD 627
Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
G+ +T + + S T K + F + L + EG++F
Sbjct: 628 GKFLLAAWNCRRLTCTDDIISLNAGDVWKGSTTYIGKLSSTLFAERLIA-FACVEGIFFS 686
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
F I L + M G+ + I R E LH +F + + ++ + P QK
Sbjct: 687 GSFCAIFWLKKKGLMPGLTFSNELISRYEGLHCDFACLLYSLLQKQLPW-------QKVH 739
Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
++HEA +E + E +P +G+ A Y++F+ +R +G E + ENPF W
Sbjct: 740 HIVHEAMEIETQFICEALPCALIGMKATLMSHYIKFVVDRLLVALGYERKYNV-ENPFDW 798
Query: 323 MSEVIDLKKEKNFFETRVTEYQQGAELK 350
M E I L+ NFF+ R+ +YQ+ + +
Sbjct: 799 M-EFIFLQGNANFFQRRMGDYQKASIMS 825
>gi|170765644|ref|ZP_02900455.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
albertii TW07627]
gi|170124790|gb|EDS93721.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
albertii TW07627]
Length = 319
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 122/326 (37%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ L K+ A+ + I+RDE++H + + + + +E ++ + +L E
Sbjct: 169 PMYLSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQKNQEKISLTQREELKRFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETTW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAKVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|270265355|ref|ZP_06193616.1| ribonucleoside-diphosphate reductase 2 subunit beta [Serratia
odorifera 4Rx13]
gi|270040759|gb|EFA13862.1| ribonucleoside-diphosphate reductase 2 subunit beta [Serratia
odorifera 4Rx13]
Length = 323
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W +N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 14 NWNSIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWAT---LTPKEQQLTIRVFTGL 67
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A+ P F EAVH+ ++ I ++L + +
Sbjct: 68 TLLDTIQNTVGAPALIADALTPHEEAVYSNIGFMEAVHARSYSSIFSTLCQTPDVDDAYR 127
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA+ L + ++ V E FY+GF
Sbjct: 128 WSEENHALQKKAHIILAHYRSDDPLLKKV---------------ASVFLESFLFYSGFYL 172
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + ++ + + +L +
Sbjct: 173 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDATRRQQVKNFAFDLLQD 232
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E VG + ++ + AN+ +G E LF NP +
Sbjct: 233 LYDNEVRYTEELYDG--VGWT-EDVKTFLHYNANKALMNLGYEALFPPAMAEVNPAILSA 289
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 322
>gi|309786253|ref|ZP_07680881.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
dysenteriae 1617]
gi|308925998|gb|EFP71477.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
dysenteriae 1617]
Length = 301
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 57/311 (18%), Positives = 114/311 (36%), Gaps = 26/311 (8%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ +N W+P +VP+ +D+ W++ LT E+ + R ++L ++
Sbjct: 1 MWNRLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGLTLLDTLQNVIGAPSL 57
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA 162
P L +F E VH+ ++ I ++L + + E + KA
Sbjct: 58 MPDALTPHEEAVLSNISFMEVVHARSYSSIFSTLCQTKDVDAAYAWSEENALLQRKAQII 117
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Q+ + + V E FY+GF + K+ A+
Sbjct: 118 QQHYRGDNPLKKKI---------------ASVFIESFLFYSGFWLPMYFSSRGKLTNTAD 162
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
+ I+RDE++H + + + +E + + +L E E+ Y E +
Sbjct: 163 LIRLIIRDEAVHGYYIGYKYQKSLEKISEAQREELKSFAFDLLLELYDNELQYTDELYAE 222
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETR 339
A + ++ + AN+ +G EPLF NP + + + +FF
Sbjct: 223 TPW---ADDVKTFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSGS 279
Query: 340 VTEYQQGAELK 350
+ Y G ++
Sbjct: 280 SSSYVMGKAVE 290
>gi|229160405|ref|ZP_04288403.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
R309803]
gi|228623129|gb|EEK79957.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
R309803]
Length = 322
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F + P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDKHPLLEKKAGIV 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + Q+ E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|213965886|ref|ZP_03394077.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
amycolatum SK46]
gi|213951464|gb|EEB62855.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
amycolatum SK46]
Length = 338
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 63/357 (17%), Positives = 122/357 (34%), Gaps = 40/357 (11%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P + N + + A D N + K W+ N W+P +VP+ +D+ W
Sbjct: 8 PSTPAHREKNPESRACPVAAIDWNTIPDDKDLEVWD---RLTGNFWLPEKVPLSNDIKSW 64
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ N L E+ R +++ +++ P AF E+VH+
Sbjct: 65 NTLNAL---EQRTTMRVFTGLTMLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHA 121
Query: 129 HTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
++ I +L + F E + KA L Y + +
Sbjct: 122 KSYSSIFQTLASTPEIQDAFRWGEENEYLQKKAKIILDYYEGDNPQKKKV---------- 171
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
+ E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 172 -----ASTLLESFLFYSGFYLPMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQRNL 226
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
E + + ++ + EI Y E +G ++++++ N+ +
Sbjct: 227 ERLTQAERDELKDYTFDLMFDLYDNEIQYTEEMY--DELGWT-EDVKRFLRYNGNKALNN 283
Query: 307 IGLEPLFKYTENPFPWMSEVI------DLKKEKNFFETRVTEYQQGAE-----LKWD 352
+G E +F E +S I + + +FF + Y G WD
Sbjct: 284 LGYEGMFPADETR---VSPSILSALSPNADENHDFFSGSGSSYVMGKAEVTQDEDWD 337
>gi|229177859|ref|ZP_04305232.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
172560W]
gi|228605650|gb|EEK63098.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
172560W]
Length = 322
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 127/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TGYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|218709884|ref|YP_002417505.1| ribonucleoside-diphosphate reductase subunit beta [Vibrio
splendidus LGP32]
gi|218322903|emb|CAV19080.1| Ribonucleoside-diphosphate reductase, beta subunit [Vibrio
splendidus LGP32]
Length = 323
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 65/331 (19%), Positives = 120/331 (36%), Gaps = 32/331 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+++ K W N W+P +VP+ +D+ WK LT++E+ + R
Sbjct: 13 NWNRMIDGKDLEIWN---RLTVNFWLPEKVPLSNDIQTWKQ---LTEEEQTLTIRVFTGL 66
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A+ P L AF EAVH+ ++ + ++L E F
Sbjct: 67 TLLDTIQNTVGAPALMEDARTPHEEAVLTNIAFMEAVHARSYSSVFSTLCTTPQIDEAFR 126
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+E P + KA L P V V E FY+GF
Sbjct: 127 WAQENPLLQKKAQIVLDDYLAEGDPLKKK--------------VASVFLESFLFYSGFYL 172
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + ++ +++
Sbjct: 173 PMHWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLAYQSLSEEEQARVKDEAYSLMFS 232
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
+E Y VGL + ++ + AN+ +G E LF NP M+
Sbjct: 233 LYEIETQYTESLY--DPVGLT-EDVKHFLHYNANKALMNLGFEALFPDELCQVNP-AIMA 288
Query: 325 EVI-DLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + + +FF + Y + + D
Sbjct: 289 ALSPNADENHDFFSGSGSSYVIGKAVATEDD 319
>gi|228907084|ref|ZP_04070948.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis IBL 200]
gi|157955401|gb|ABW06095.1| NrdF [Bacillus thuringiensis serovar toumanoffi]
gi|228852588|gb|EEM97378.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis IBL 200]
Length = 322
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TGYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|68069763|ref|XP_676793.1| ribonucleotide reductase small subunit [Plasmodium berghei strain
ANKA]
gi|56496646|emb|CAI04349.1| ribonucleotide reductase small subunit, putative [Plasmodium
berghei]
Length = 158
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 84/153 (54%), Gaps = 9/153 (5%)
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG+ F F I + NK+ G+ + I RDE LH +F + + ++ + P
Sbjct: 1 EGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLP------ 54
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
++ + ++ EA +E ++ E++P +G+N+ QY++F+A+R +G +F ++
Sbjct: 55 -EEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HS 112
Query: 317 ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
+NPF WM +I L+ + NFFE RV +YQ+ +
Sbjct: 113 KNPFNWMD-LISLQGKTNFFEKRVADYQKSGVM 144
>gi|300859086|ref|YP_003784069.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium
pseudotuberculosis FRC41]
gi|300686540|gb|ADK29462.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
pseudotuberculosis FRC41]
gi|302206792|gb|ADL11134.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium
pseudotuberculosis C231]
gi|302331346|gb|ADL21540.1| Ribonucleoside-diphosphate reductase beta chain [Corynebacterium
pseudotuberculosis 1002]
gi|308277038|gb|ADO26937.1| Ribonucleotide reductase, beta subunit [Corynebacterium
pseudotuberculosis I19]
Length = 328
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 66/336 (19%), Positives = 124/336 (36%), Gaps = 40/336 (11%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P +VP+ +DL W + L D E+ R
Sbjct: 19 NWNSIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLKSWGT---LNDLEKTTTMRVFTGL 72
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I +L + E F
Sbjct: 73 TMLDTIQGTVGAVSMIPDAITPHEEAVYTNIAFMESVHAKSYSNIFMTLASTKEINEAFR 132
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y + V + E FY+GF
Sbjct: 133 WSEENENLQKKAKIVLSYYEGAD---------------PLKRKVASTLLESFLFYSGFYL 177
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + Q E +E ++ + +L++
Sbjct: 178 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQQAVREQTPERQEELKEYTFDLLYD 237
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
EI Y + +G ++++++ AN+ + +G E LF E +S I
Sbjct: 238 LYDNEIQYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADECK---VSPAI 291
Query: 328 ------DLKKEKNFFETRVTEYQQG-----AELKWD 352
+ + +FF + Y G + WD
Sbjct: 292 LSALSPNADENHDFFSGSGSSYVIGKAENTTDDDWD 327
>gi|291295355|ref|YP_003506753.1| ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279]
gi|290470314|gb|ADD27733.1| Ribonucleoside-diphosphate reductase [Meiothermus ruber DSM 1279]
Length = 429
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 59/307 (19%), Positives = 121/307 (39%), Gaps = 23/307 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ E+P+ DD W + L+ +E+ + ++ L +++ + + +
Sbjct: 24 FWDQNVRQFWVDEEIPLADDKLTWMT---LSREEQRVYEQVLAGLTLLDTVQGSVGMPLL 80
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA 162
+H+ + + + + E +H+ ++ I ++L E ELF+ R P + K +
Sbjct: 81 SQHIESLQAKAVMGFMGAMEHMHAKSYSSIFSTLCTSERIAELFDWVRSEPVLQEKQTFV 140
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+ + V+ E FY+GF L L +M E
Sbjct: 141 HRRYLGVQDEQSL-----------YLGLAASVLLESFLFYSGFFYPLLLAGQGRMTSSGE 189
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H + + ++ P K ++ +ML LE Y+
Sbjct: 190 IINLIIRDESIHGVYVGLLAQEVYAGLPEAQQKTAREGVYSMLEHLAGLEERYSRMLY-- 247
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETR 339
+GL + + ++ A++ +GLEP F + NP ++ + K +FF T+
Sbjct: 248 TPLGLT-EAVVTFSRYNADKALMNLGLEPYFGVSAEAVNPVV-LAGLSTHTKNHDFFSTK 305
Query: 340 VTEYQQG 346
Y +
Sbjct: 306 GNGYVKA 312
>gi|228938567|ref|ZP_04101175.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228971446|ref|ZP_04132072.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228978059|ref|ZP_04138438.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis Bt407]
gi|157955340|gb|ABW06049.1| NrdF [Bacillus thuringiensis serovar thuringiensis]
gi|157955368|gb|ABW06070.1| NrdF [Bacillus thuringiensis serovar galechiae]
gi|157955384|gb|ABW06082.1| NrdF [Bacillus thuringiensis serovar sotto]
gi|228781720|gb|EEM29919.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis Bt407]
gi|228788313|gb|EEM36266.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228821165|gb|EEM67182.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|326939076|gb|AEA14972.1| ribonucleotide-diphosphate reductase [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 322
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 127/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQVAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDTHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TGYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|310816082|ref|YP_003964046.1| ribonucleoside-diphosphate reductase, beta subunit
[Ketogulonicigenium vulgare Y25]
gi|308754817|gb|ADO42746.1| ribonucleoside-diphosphate reductase, beta subunit
[Ketogulonicigenium vulgare Y25]
Length = 317
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 62/322 (19%), Positives = 123/322 (38%), Gaps = 28/322 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ + W +N W+P +VP+ +D+ W S T+ E+ + R
Sbjct: 7 NWNRIADDRDLEIWN---RLTSNFWLPEKVPLSNDIQSWSSF---TEAEKQLTIRVFTGL 60
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
+++ + A+ + P F EAVH+ ++ I ++L + E F
Sbjct: 61 TLLDTIQSKAGAPALMKDALTPHEEAVFANICFMEAVHARSYSSIFSTLCTTVEIDEAFR 120
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ KA L +T T+ ++ V E FY+GF
Sbjct: 121 WAELNKDLQRKA--------KLIEACYTDDTQPLKKKI------ASVFLESFMFYSGFYL 166
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L ++ A+ + I++DE++H + P +E + + +L +
Sbjct: 167 PLHWASRARLTNTADLIRLIIKDEAVHGYYIGYKFQLGYALLPEAEKEELKGFAYDLLLQ 226
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
+E +YA + +GL +Q++ + AN+ +G +P+F NP +
Sbjct: 227 LYEIECSYAADLYDG--IGLT-EDVKQFLHYNANKSLMNLGFDPIFPDEITNFNPAVLAA 283
Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
D + +FF + Y G
Sbjct: 284 LAPDANENHDFFSGSGSSYVIG 305
>gi|261820460|ref|YP_003258566.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
wasabiae WPP163]
gi|261604473|gb|ACX86959.1| Ribonucleoside-diphosphate reductase [Pectobacterium wasabiae
WPP163]
Length = 320
Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats.
Identities = 59/330 (17%), Positives = 120/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W + L ER + R
Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWGT---LNPRERQLTIRVFTGLTLL 67
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ + P L +F EAVH+ ++ I ++L L + +
Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P++ K++ L + ++ V E FY+GF +
Sbjct: 128 ENPALQKKSDIILSHYRSDDPLMKKV---------------ASVFLESFLFYSGFYLPMY 172
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + ++ + + +L +
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKADPARQQQVKNFAYDLLQDLYD 232
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+ Y E VG ++++ + AN+ +G E LF NP +
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319
>gi|322831489|ref|YP_004211516.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
gi|321166690|gb|ADW72389.1| Ribonucleoside-diphosphate reductase [Rahnella sp. Y9602]
Length = 327
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 59/330 (17%), Positives = 118/330 (35%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W + L+ E+ + R
Sbjct: 18 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LSAKEKQLTIRVFTGLTLL 74
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
+++ + + P F EAVH+ ++ I ++L D E +
Sbjct: 75 DTVQNVVGAPTLMKDAVTPHEEAVYSNICFMEAVHARSYSSIFSTLCATVDVDEAYRWSE 134
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ KA L Y V E FY+GF +
Sbjct: 135 ENVALQNKAAIILSYYDGEDPLMKKV---------------ASVFLESFLFYSGFYLPMY 179
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + ++ ++++ ++ +
Sbjct: 180 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKALALESEERQRQIKEQAFDLIQDLYD 239
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
EI Y E VG + ++++ + AN+ +G E LF NP +
Sbjct: 240 NEIRYTEELYDG--VGWS-EDVKKFLHYNANKALMNLGYEALFPASMADVNPAILSALSP 296
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 297 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 326
>gi|259417680|ref|ZP_05741599.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter
sp. TrichCH4B]
gi|259346586|gb|EEW58400.1| ribonucleoside-diphosphate reductase, beta subunit [Silicibacter
sp. TrichCH4B]
Length = 325
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 67/346 (19%), Positives = 126/346 (36%), Gaps = 35/346 (10%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
++ R + + N+L K W N W+P +VP+ +D+ W + LT D
Sbjct: 3 DMTQARAVPKAINWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSW---SQLTPD 56
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+ + R +++ + + P L AF EAVH+ ++ + ++
Sbjct: 57 EQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITPHEEAVLSNIAFMEAVHARSYSSVFST 116
Query: 138 LGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
L E F E + AK+ L +SP + V
Sbjct: 117 LCQTTEVDEAFRWSAENEHLQAKSRLILDEYDATASP--------------LRKKIASVF 162
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
E FY+GF + ++ A+ + I+RDE++H + + K
Sbjct: 163 LESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRDEAIHGYYIGYKFQRGMERLSEAERK 222
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
E + + +L + +E Y + +GL + ++ + AN+ +G E LF
Sbjct: 223 ELKDFAFGLLFDLYDIEARYTEQLYDG--LGLT-EDVKNFLHYNANKALQNLGFEALFPE 279
Query: 316 TE---NPFPWMSEVI-DLKKEKNFFETRVTEYQ--QGAELK---WD 352
NP M+ + + +FF + Y + + WD
Sbjct: 280 ETCRVNP-AIMAALSPGSDENHDFFSGSGSSYVIGKAEATEDEDWD 324
>gi|325496274|gb|EGC94133.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
fergusonii ECD227]
Length = 319
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDNPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLGKTSLEQREELKNFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|229189534|ref|ZP_04316550.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
ATCC 10876]
gi|228593979|gb|EEK51782.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
ATCC 10876]
Length = 322
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAKEQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|1395207|gb|AAB81405.1| ribonucleotide reductase R2-1 small subunit [Mycobacterium
tuberculosis str. Erdman]
Length = 321
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 69/333 (20%), Positives = 128/333 (38%), Gaps = 35/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+LL K WE N W+P ++P+ +DLA W++ L+ E+ R
Sbjct: 13 NWNRLLDAKDLQVWE---RLTGNFWLPEKIPLSNDLASWQT---LSSTEQQTTIRVFTGL 66
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++ A +A+ P L AF E+VH+ ++ I ++L + + F+
Sbjct: 67 TLLDTAQATVGAVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFD 126
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ P + KA + Y + + + V+ E FY+GF
Sbjct: 127 WSEQNPYLQRKAQIIVDYYRGDDAQAQR----------------SSVMLESFLFYSGFYL 170
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + + ++ + +LH
Sbjct: 171 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHT 230
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
EI YAH+ +G YM++ AN+ +G +P F NP +
Sbjct: 231 LYANEIDYAHDLY--DELGWT-DDVLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAA 287
Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
+ +FF + Y G + WD
Sbjct: 288 LDPGAGENHDFFSGSGSSYVMGTHQPTTDTDWD 320
>gi|167947199|ref|ZP_02534273.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 241
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 78/199 (39%), Positives = 115/199 (57%), Gaps = 2/199 (1%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
K VN DDKR++N +DVNQL P KY WAWE +L+A NHW P ++ M D+ +
Sbjct: 45 TKPVNPDDKRVVNGLTDVNQLAPFKYPWAWEYFLNANKNHWTPLDINMAQDVHDYHH--K 102
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT +ER + + L + +S+ L NI LA+ +S PE + Y RQ +EEA+H+ T+Q+
Sbjct: 103 LTLEERHIYENVLSYLTTSDILAMRNIGLAVMEKMSAPELQIYQARQVYEEALHTWTYQH 162
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I ++GLD+ E++N YR VP I K A + ++ +D + FL F
Sbjct: 163 CIETIGLDQVEIYNRYRVVPEINGKIQIANRRLHSILRSDVDLSNRDELENFLMAYLFFA 222
Query: 194 VVFEGMWFYTGFAQILSLG 212
+FEG+WFY GF+ I +L
Sbjct: 223 GIFEGVWFYNGFSPIFALQ 241
>gi|45478633|ref|NP_995489.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
biovar Microtus str. 91001]
gi|52788092|ref|YP_093920.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis]
gi|145597234|ref|YP_001154698.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
Pestoides F]
gi|162417832|ref|YP_001604568.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
Angola]
gi|229896974|ref|ZP_04512133.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Yersinia pestis Pestoides A]
gi|45357286|gb|AAS58680.1| putative ribonucleoside-diphosphate reductase beta subunit
[Yersinia pestis biovar Microtus str. 91001]
gi|52538021|emb|CAG27446.1| putative ribonucleoside-diphosphate reductase beta subunit
[Yersinia pestis]
gi|145213002|gb|ABP42407.1| ribonucleoside-diphosphate reductase class Ia beta subunit
[Yersinia pestis Pestoides F]
gi|162350804|gb|ABX84753.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
Angola]
gi|229700010|gb|EEO88050.1| Ribonucleotide reductase of class Ia (aerobic),beta subunit
[Yersinia pestis Pestoides A]
Length = 380
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 68/338 (20%), Positives = 126/338 (37%), Gaps = 26/338 (7%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ + M +S +V + KY + + W P EV + D + + L +
Sbjct: 12 DATKEPMFLGQSVNVARYDQQKYRDFEKLIEKQLSFFWRPEEVDITTDRIDFNT--KLQE 69
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
ER + NL + +S+ + + +S PE ++ +F E +HS ++ +II
Sbjct: 70 HERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPELETWVETWSFSETIHSRSYTHIIR 129
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-----------------TGTK 179
+ D +F+ I ++A L + G
Sbjct: 130 GMVDDPSIVFDGIVTDEEIISRAVSISSEYDRLYEMTCARQHLGEDEFERLYVSEFDGKP 189
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
Q L V E + FY FA + G + G + ++I RDE+LH
Sbjct: 190 YPLQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKLLEGNTKIMRFIARDEALHCEGTE 249
Query: 240 DVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
+I ++ L K E + + + E+ +A G +GLNA +
Sbjct: 250 RMIRFMRTGREGLMWKMIAAEEESFIYQTMMDVAGQEMRWADYLFKDGSMIGLNADILKS 309
Query: 295 YMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
Y+++ N ++GL PLF ++P WM++ +
Sbjct: 310 YVKYRTNLAMRRLGLRPLFPEIKDDPLVWMNKWLLSDT 347
>gi|218233288|ref|YP_002366135.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
B4264]
gi|229149653|ref|ZP_04277884.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
m1550]
gi|157955328|gb|ABW06040.1| NrdF [Bacillus thuringiensis serovar entomocidus]
gi|157955388|gb|ABW06085.1| NrdF [Bacillus thuringiensis serovar subtoxicus]
gi|157955409|gb|ABW06101.1| NrdF [Bacillus cereus]
gi|218161245|gb|ACK61237.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
B4264]
gi|228633863|gb|EEK90461.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
m1550]
Length = 322
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQDLLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|239917558|ref|YP_002957116.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Micrococcus luteus NCTC 2665]
gi|281413955|ref|ZP_06245697.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Micrococcus luteus NCTC 2665]
gi|239838765|gb|ACS30562.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Micrococcus luteus NCTC 2665]
Length = 323
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 71/338 (21%), Positives = 131/338 (38%), Gaps = 34/338 (10%)
Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
L + N+ ++ E + NN W+P +VP+ +D+ W + LTD+ERL+ R
Sbjct: 9 LVEAINWNR---IQDEKDVEVWNRLVNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMR 62
Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142
+++ +++ P L AF E+VH+ ++ I ++L
Sbjct: 63 VFTGLTLLDTIQGTVGAVSLIPDAMTPHEEAVLTNIAFMESVHAKSYSSIFSTLASTPEI 122
Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
E F RE ++ AKA ++ + E FY
Sbjct: 123 DEAFRWSRENRNLQAKARLIVERYDGQDPYKKKI---------------ASTLLESFLFY 167
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
+GF + L ++ A+ + I+RDE++H + + P +E + +
Sbjct: 168 SGFYWPMYLSAHARLTNTADLIRLIIRDEAVHGYYIGYKYQRSIETLPEEKREELKAFTF 227
Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
+L E E+ Y H+ VGL A ++++ + AN+ +G EP+F NP
Sbjct: 228 ELLFELYENEVEYTHDLY--DAVGL-AEDVKKFLHYNANKALMNLGYEPMFPAETTNVNP 284
Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
+ + + +FF + Y G WD
Sbjct: 285 AILSALSPNSDENHDFFSGSGSSYVIGKAENTEDEDWD 322
>gi|291284009|ref|YP_003500827.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli O55:H7 str. CB9615]
gi|290763882|gb|ADD57843.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli O55:H7 str. CB9615]
Length = 319
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISPGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|289705575|ref|ZP_06501967.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus
luteus SK58]
gi|289557804|gb|EFD51103.1| ribonucleoside-diphosphate reductase, beta subunit [Micrococcus
luteus SK58]
Length = 323
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 71/338 (21%), Positives = 131/338 (38%), Gaps = 34/338 (10%)
Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
L + N+ ++ E + NN W+P +VP+ +D+ W + LTD+ERL+ R
Sbjct: 9 LVEAVNWNR---IQDEKDVEVWNRLVNNFWLPEKVPLSNDVQSW---SHLTDEERLLSMR 62
Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142
+++ +++ P L AF E+VH+ ++ I ++L
Sbjct: 63 VFTGLTLLDTIQGTVGAVSLIPDAMTPHEEAVLTNIAFMESVHAKSYSSIFSTLASTPEI 122
Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
E F RE ++ AKA ++ + E FY
Sbjct: 123 DEAFRWSRENRNLQAKAGLIVERYDGQDPYKKKI---------------ASTLLESFLFY 167
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
+GF + L ++ A+ + I+RDE++H + + P +E + +
Sbjct: 168 SGFYWPMYLSAHARLTNTADLIRLIIRDEAVHGYYIGYKYQRSIETLPEEKREELKAFTF 227
Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
+L E E+ Y H+ VGL A ++++ + AN+ +G EP+F NP
Sbjct: 228 ELLFELYENEVEYTHDLY--DAVGL-AEDVKKFLHYNANKALMNLGYEPMFPAETTNVNP 284
Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAE-----LKWD 352
+ + + +FF + Y G WD
Sbjct: 285 AILSALSPNSDENHDFFSGSGSSYVIGKAENTEDEDWD 322
>gi|218547807|ref|YP_002381598.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia
fergusonii ATCC 35469]
gi|218355348|emb|CAQ87955.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
[Escherichia fergusonii ATCC 35469]
Length = 319
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 121/326 (37%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYT 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E S+ KA Q+ + + V E FY+GF
Sbjct: 124 WSEENASLQRKAQIIQQHYRGDNPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETTW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|157955336|gb|ABW06046.1| NrdF [Bacillus thuringiensis serovar kurstaki]
Length = 322
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E + +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELSEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|312137650|ref|YP_004004986.1| ribonucleoside-diphosphate reductase beta subunit nrdf [Rhodococcus
equi 103S]
gi|311886989|emb|CBH46298.1| ribonucleoside-diphosphate reductase beta subunit NrdF [Rhodococcus
equi 103S]
Length = 322
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 72/332 (21%), Positives = 126/332 (37%), Gaps = 34/332 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P ++P+ +DLA W + LTD ER M R
Sbjct: 13 NWNRVPDPKDAEVWD---RLTGNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGL 66
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFN 147
++ A +A+ P L AF E+VH+ ++ I ++L F
Sbjct: 67 TLLDTAQATVGAVAMIADAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTRQIDAAFE 126
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
P + KA + Y + + + V+ E FY+GF
Sbjct: 127 WSERNPHLQRKAQIVVDYYRGDDALARK---------------AASVMLESFLFYSGFYL 171
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ ++ A+ + I+RDE++H + + ++ + +L
Sbjct: 172 PMYWASHGELTNTADLIRLIIRDEAVHGYYIGYKCRKALERLDASARDAHRRYTYDLLET 231
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+AYA + VG A YM+F AN+ +G EP+F +E NP +
Sbjct: 232 LYANEVAYAADLY--DEVGWTAEVVS-YMRFNANKALANLGYEPMFPVSECQVNPAILSA 288
Query: 325 EVIDLKKEKNFFETRVTEY----QQGAE-LKW 351
+ +FF + Y Q+ E + W
Sbjct: 289 LDPGAGENHDFFSGSGSAYVIGKQKPTEDVDW 320
>gi|300932708|ref|ZP_07147964.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
resistens DSM 45100]
Length = 331
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 61/341 (17%), Positives = 118/341 (34%), Gaps = 50/341 (14%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P +VP+ +D+ W + L + ER R
Sbjct: 22 NWNSIPDDKDLEVWD---RLTANFWLPEKVPLSNDVQSWGT---LNEVERQTTMRVFTGL 75
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ +F E+VH+ ++ I +L + F
Sbjct: 76 TMLDTIQGTVGAVSLINDAQTMHEEAVYTNISFMESVHAKSYSSIFMTLASTPEINDAFR 135
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA L + + Q + V+ E FY+GF
Sbjct: 136 WSEENEHLQNKAKIILDFYEGDD---------------PQKRKIASVLLESFLFYSGFYL 180
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDES+H + + + +E + + +L E
Sbjct: 181 PMYWSSHAKLTNTADIIRLIIRDESVHGYYIGYKYQRAMEQESAARQEELKDHTFDLLLE 240
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---------- 317
E Y + +G ++++++ AN+ + +G E LF E
Sbjct: 241 LYDNEAQYTEDLY--DELGWT-EDVKRFLRYNANKALNNLGYEGLFPADETRVSPAILSA 297
Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
NP + +FF + Y G + WD
Sbjct: 298 LNP--------GGDENHDFFSGSGSSYVIGKAENTTDDDWD 330
>gi|157955305|gb|ABW06022.1| NrdF [Bacillus thuringiensis serovar aizawai]
gi|157955352|gb|ABW06058.1| NrdF [Bacillus thuringiensis serovar colmeri]
gi|157955372|gb|ABW06073.1| NrdF [Bacillus thuringiensis serovar indiana]
gi|157955405|gb|ABW06098.1| NrdF [Bacillus thuringiensis serovar wuhanensis]
Length = 322
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|238784826|ref|ZP_04628827.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
bercovieri ATCC 43970]
gi|238714242|gb|EEQ06253.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
bercovieri ATCC 43970]
Length = 323
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 59/330 (17%), Positives = 122/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W + LT +E+ + R
Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ + P +F EAVH+ ++ I ++L + + +
Sbjct: 71 DTIQNTLGAPALIKDAMTPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA+ LQ+ V E FY+GF +
Sbjct: 131 ENGPLQKKADIILQHYHNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L +
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLERVDNSRRQEIKNFAFDLLQDLYD 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y + K VG ++++ + AN+ +G E LF ++ +P +
Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322
>gi|157955319|gb|ABW06033.1| NrdF [Bacillus thuringiensis serovar pakistani]
Length = 322
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSTEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|119387083|ref|YP_918138.1| ribonucleotide-diphosphate reductase subunit beta [Paracoccus
denitrificans PD1222]
gi|119377678|gb|ABL72442.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Paracoccus denitrificans PD1222]
Length = 329
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 67/333 (20%), Positives = 121/333 (36%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W N W+P +VP+ +D+ W + L +ER + R
Sbjct: 20 NWNRLEDEKDLEVWN---RLTVNFWLPEKVPLSNDVQSWAT---LRPEERELTIRVFTGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A+ P L AF EAVH+ ++ I ++L L F
Sbjct: 74 TLLDTIQNTVGAPAMMPDALTPHEEAVLSNIAFMEAVHARSYSSIFSTLCLTPEVDAAFR 133
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P + KA L+ + S P + V E FY+GF
Sbjct: 134 WAEENPHLQQKARLVLEEYKAGSDP--------------LKRKIASVFLESFMFYSGFYL 179
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + + +++ +
Sbjct: 180 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLERLGEAERAALKDFAFSLIFD 239
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
+E Y E +GL + ++ + AN+ +G E LF NP ++
Sbjct: 240 LYDIEAKYTAELYDG--IGLT-EDVKSFLHYNANKALQNLGYEALFPPQACEVNP-AILA 295
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 296 ALSPDSENHDFFSGSGSSYVIGKAVATEDEDWD 328
>gi|30019505|ref|NP_831136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
ATCC 14579]
gi|229043194|ref|ZP_04190917.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
AH676]
gi|229078637|ref|ZP_04211194.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
Rock4-2]
gi|229108909|ref|ZP_04238513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
Rock1-15]
gi|229126769|ref|ZP_04255781.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
BDRD-Cer4]
gi|229144056|ref|ZP_04272472.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
BDRD-ST24]
gi|296502033|ref|YP_003663733.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
thuringiensis BMB171]
gi|29895049|gb|AAP08337.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
ATCC 14579]
gi|157955310|gb|ABW06026.1| NrdF [Bacillus thuringiensis serovar canadensis]
gi|157955392|gb|ABW06088.1| NrdF [Bacillus thuringiensis serovar thompsoni]
gi|157955396|gb|ABW06091.1| NrdF [Bacillus thuringiensis serovar tohokuensis]
gi|228639453|gb|EEK95867.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
BDRD-ST24]
gi|228656709|gb|EEL12535.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
BDRD-Cer4]
gi|228674565|gb|EEL29805.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
Rock1-15]
gi|228704707|gb|EEL57136.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
Rock4-2]
gi|228726156|gb|EEL77390.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
AH676]
gi|296323085|gb|ADH06013.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
thuringiensis BMB171]
Length = 322
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|305681191|ref|ZP_07403998.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
matruchotii ATCC 14266]
gi|305659396|gb|EFM48896.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
matruchotii ATCC 14266]
Length = 330
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P +VP+ +DL W + L + E+ R
Sbjct: 21 NWNTIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLKSWST---LNELEKQTTMRVFTGL 74
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ L AF E+VH+ ++ I +L + E F
Sbjct: 75 TLLDTIQGTVGAVSMLPDAVTLHEEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFR 134
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y V + E FY+GF
Sbjct: 135 WSEENENLQKKAKIILTYYDGAD---------------PLKRKVASTLLESFLFYSGFYL 179
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + Q + +E ++ + +L+E
Sbjct: 180 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKFQQALAKESPARQEELKEYTFDVLYE 239
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324
EIAY + +G ++++++ AN+ + +G E LF E P +
Sbjct: 240 LYENEIAYTEDLY--DPLGWT-EDVKRFLRYNANKALNNLGYEALFPADECQVSPAILSA 296
Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
+ + +FF + Y G + WD
Sbjct: 297 LSPNADENHDFFSGSGSSYVIGKAENTTDEDWD 329
>gi|82778048|ref|YP_404397.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
dysenteriae Sd197]
gi|81242196|gb|ABB62906.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
dysenteriae Sd197]
Length = 322
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F E VH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEVVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + + V E FY+GF
Sbjct: 124 WSEENALLQRKAQIIQQHYRGDNPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKSLEKISEAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKTFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSSSSYVMGKAVE 311
>gi|269217712|ref|ZP_06161566.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
oral taxon 848 str. F0332]
gi|269212647|gb|EEZ78987.1| ribonucleoside-diphosphate reductase, beta subunit [Actinomyces sp.
oral taxon 848 str. F0332]
Length = 325
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 60/330 (18%), Positives = 118/330 (35%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P ++P+ +D+ W + L E+ M R
Sbjct: 16 NWNRIEDEKDLEVWDRLTGNFWLPEKIPLSNDIPSWST---LKPHEQQMTTRVFTGLTLL 72
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ +++ P L AF E+VH+ ++ I ++L E E F
Sbjct: 73 DTVQGTVGAVSLIPDAVTPHEEAVLTNIAFMESVHAKSYSSIFSTLISTEEIDETFRWSE 132
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA L Y + + + E FY+GF +
Sbjct: 133 ENEYLQKKAKIILDYYRGEDAEKRKV---------------ASTMLESFLFYSGFYAPMY 177
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + E Q+ + +++ +
Sbjct: 178 WSAHAKLTNTADLIRLIIRDEAVHGYYIGYKYQKALAKASQERRDELQEYAYSLVMDLYD 237
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E Y +GL + +++ AN+ + +G E LF + NP +
Sbjct: 238 NEELYTESLY--DEMGLT-EDVKMFLRHNANKALNNLGYEALFGPDQTAVNPSILAALSP 294
Query: 328 DLKKEKNFFETRVTEYQQGAE-----LKWD 352
+ + +FF + Y G WD
Sbjct: 295 NADENHDFFSGSGSSYVIGTAEATTDDDWD 324
>gi|75759355|ref|ZP_00739452.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|218896385|ref|YP_002444796.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
G9842]
gi|228900033|ref|ZP_04064269.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis IBL 4222]
gi|228920164|ref|ZP_04083513.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228964415|ref|ZP_04125529.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar sotto str. T04001]
gi|74493187|gb|EAO56306.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|157955348|gb|ABW06055.1| NrdF [Bacillus thuringiensis serovar alesti]
gi|157955356|gb|ABW06061.1| NrdF [Bacillus thuringiensis serovar dakota]
gi|157955360|gb|ABW06064.1| NrdF [Bacillus thuringiensis serovar darmstadiensis]
gi|157955364|gb|ABW06067.1| NrdF [Bacillus thuringiensis serovar dendrolimus]
gi|157955380|gb|ABW06079.1| NrdF [Bacillus thuringiensis serovar ostriniae]
gi|218545942|gb|ACK98336.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
G9842]
gi|228795272|gb|EEM42764.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228839620|gb|EEM84912.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228859647|gb|EEN04071.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis IBL 4222]
Length = 322
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TGYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|209762238|gb|ACI79431.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
coli]
gi|320646030|gb|EFX15007.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H- str. 493-89]
gi|320651330|gb|EFX19761.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H- str. H 2687]
Length = 319
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|269865568|ref|XP_002651969.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063399|gb|EED42087.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 251
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 62/242 (25%), Positives = 102/242 (42%), Gaps = 20/242 (8%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ + P++Y WE Y + W EV M D + + LT +E+
Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D
Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LFN +PSI KA WA ++ + +S V + EG
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD--------------TRCVAFACVEG 188
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++F FA I L + M G+ + I RDE LH +F + I + + +
Sbjct: 189 IFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNKCTVIEDIVRK 248
Query: 259 QK 260
+
Sbjct: 249 RW 250
>gi|308172806|ref|YP_003919511.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
amyloliquefaciens DSM 7]
gi|307605670|emb|CBI42041.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
amyloliquefaciens DSM 7]
Length = 327
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 68/308 (22%), Positives = 120/308 (38%), Gaps = 20/308 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L E+ R L ++ N + I
Sbjct: 24 FYAQNVKQFWLPEEISLNGDLLSWK---ALGPAEQTTYMRGLAGLTLLDTEQGNTGMPII 80
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
+H++ + + L A E VH+ ++ I +L E E+F + P + KA
Sbjct: 81 AKHIAGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKTNPYLQRKAAL 140
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ + K+ D L V V E FY+GF L K+
Sbjct: 141 ITGLYRDI---------KEGDAISLYKALVASVYLESFLFYSGFYYPLYFAGQGKLTSSG 191
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E I+RDE++H + + +I + E + + +L E E+AY +
Sbjct: 192 EIINLIIRDEAIHGVYVGLLAQEIYGKQDPDVQLEMRDFAVELLTELYDNEVAYTEDLY- 250
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETRV 340
VGL ++++++ AN+ +G +P F+ NP M+ + K +FF +
Sbjct: 251 -DAVGLT-HDVKRFLRYNANKALQNLGFDPYFEEERPNPIV-MNGLNTKTKSHDFFSQKG 307
Query: 341 TEYQQGAE 348
Y++
Sbjct: 308 NGYKKATV 315
>gi|42780545|ref|NP_977792.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus cereus
ATCC 10987]
gi|42736465|gb|AAS40400.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
ATCC 10987]
Length = 322
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 127/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|227833933|ref|YP_002835640.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
aurimucosum ATCC 700975]
gi|262184936|ref|ZP_06044357.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
aurimucosum ATCC 700975]
gi|227454949|gb|ACP33702.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
aurimucosum ATCC 700975]
Length = 329
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 62/330 (18%), Positives = 123/330 (37%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P +VP+ +D+ WK+ LT+ E+ R
Sbjct: 20 NWNTIPDEKDLEVWD---RLTGNFWLPEKVPVSNDIPSWKT---LTEKEQETTMRVFAGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ P AF E+VH+ ++ I +L + F
Sbjct: 74 TLLDTIQGTVGAVSLLPDAVTPHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA + Y Q + + E FY+GF
Sbjct: 134 WSEENENLQRKAKIVMSYYQGDNPLKKKV---------------ASTLLESFLFYSGFFL 178
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + Q + +E + + +L++
Sbjct: 179 PMHFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQGYQKLSEPEQEEMKGYAFDLLYD 238
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
EI Y + +G ++++++ AN+ + +G E LF E +P S
Sbjct: 239 LYENEIDYTEDLY--DELGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + E D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEETTDD 325
>gi|238794433|ref|ZP_04638043.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
intermedia ATCC 29909]
gi|238726228|gb|EEQ17772.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
intermedia ATCC 29909]
Length = 330
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 62/333 (18%), Positives = 125/333 (37%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ W + LT +E+ + R
Sbjct: 21 NWNKIEDDKDLDVWN---RLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGL 74
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A+ + P +F EAVH+ ++ I ++L + + +
Sbjct: 75 TLLDTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYR 134
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA+ LQ+ V E FY+GF
Sbjct: 135 WSEENGPLQKKADIILQHYHNDDPLKKKI---------------ASVFLESFLFYSGFYL 179
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + Q + + +E + + +L +
Sbjct: 180 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQQGLEKVDNARRQEIKNFAFDLLQD 239
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + K VG ++++ + AN+ +G E LF ++ +P +
Sbjct: 240 LYDNEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAA 296
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 297 LSPNADENHDFFSGSGSSYVIGKAINTEDEDWD 329
>gi|323941488|gb|EGB37671.1| ribonucleotide reductase [Escherichia coli E482]
Length = 319
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ +W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPVWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|293415927|ref|ZP_06658567.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
gi|291432116|gb|EFF05098.1| ribonucleoside-diphosphate reductase [Escherichia coli B185]
Length = 319
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|225686158|ref|YP_002734130.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
melitensis ATCC 23457]
gi|256043236|ref|ZP_05446173.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
melitensis bv. 1 str. Rev.1]
gi|256262715|ref|ZP_05465247.1| ribonucleotide reductase [Brucella melitensis bv. 2 str. 63/9]
gi|260564448|ref|ZP_05834933.1| ribonucleotide reductase [Brucella melitensis bv. 1 str. 16M]
gi|265989661|ref|ZP_06102218.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
melitensis bv. 1 str. Rev.1]
gi|225642263|gb|ACO02176.1| Ribonucleoside-diphosphate reductase [Brucella melitensis ATCC
23457]
gi|260152091|gb|EEW87184.1| ribonucleotide reductase [Brucella melitensis bv. 1 str. 16M]
gi|263000330|gb|EEZ13020.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
melitensis bv. 1 str. Rev.1]
gi|263092503|gb|EEZ16756.1| ribonucleotide reductase [Brucella melitensis bv. 2 str. 63/9]
gi|326410495|gb|ADZ67559.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
melitensis M28]
gi|326553787|gb|ADZ88426.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
melitensis M5-90]
Length = 329
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 58/330 (17%), Positives = 115/330 (34%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ W++ L E+ + R
Sbjct: 20 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTTRVFTGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + + P L +F EAVH+ ++ I ++L L + +
Sbjct: 74 TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 133
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + K+ L V E FY+GF
Sbjct: 134 WSEENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYL 178
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 179 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 238
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 239 LYDNEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 295
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAVATEDE 325
>gi|330908707|gb|EGH37221.1| ribonucleotide reductase of class 1b (aerobic), beta subunit
[Escherichia coli AA86]
Length = 319
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARHEELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|225021562|ref|ZP_03710754.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii
ATCC 33806]
gi|224945553|gb|EEG26762.1| hypothetical protein CORMATOL_01583 [Corynebacterium matruchotii
ATCC 33806]
Length = 330
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 66/333 (19%), Positives = 123/333 (36%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P +VP+ +DL W + L D E+ R
Sbjct: 21 NWNTIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLKSWST---LNDLEKQTTMRVFTGL 74
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ L AF E+VH+ ++ I +L + E F
Sbjct: 75 TLLDTIQGTVGAVSMLPDAVTLHEEAVLTNIAFMESVHAKSYSNIFMTLASTKEINEAFR 134
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y V + E FY+GF
Sbjct: 135 WSEENENLQKKAKIILTYYDGAD---------------PLKRKVASTLLESFLFYSGFYL 179
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + Q + +E ++ + +L+E
Sbjct: 180 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKFQQALAKESPARQEELKEYTFDVLYE 239
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324
EIAY + +G ++++++ AN+ + +G E LF E P +
Sbjct: 240 LYENEIAYTEDLY--DPLGWT-EDVKRFLRYNANKALNNLGYEALFPADECQVSPAILSA 296
Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
+ + +FF + Y G + WD
Sbjct: 297 LSPNADENHDFFSGSGSSYVIGKAENTTDEDWD 329
>gi|172041159|ref|YP_001800873.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
urealyticum DSM 7109]
gi|171852463|emb|CAQ05439.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
urealyticum DSM 7109]
Length = 331
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 58/343 (16%), Positives = 117/343 (34%), Gaps = 47/343 (13%)
Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
+ + N++ + W+ N W+P +VP+ +D+ W + L D E+ R
Sbjct: 17 IIGSVNWNEVPDDRDLEVWD---RLTANFWLPEKVPVSNDIQSWAT---LNDAEKNATMR 70
Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142
+++ +++ + L AF E+VH+ ++ I +L
Sbjct: 71 VFTGLTMLDTIQGTVGAVSLIPEATTMHEEAVLTNIAFMESVHAKSYSQIFMTLASTREI 130
Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
+ F E ++ K LQY + + V+ E FY
Sbjct: 131 NDAFRWSEENENLQRKGEIILQYYKGDD---------------PLKRKIASVLLESFLFY 175
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
+GF + K+ A+ + I+RDES+H + + +E +
Sbjct: 176 SGFYLPMRWSSMGKLTNTADIIRLIIRDESVHGYYIGYKYQRALENESPERQEELKGFVV 235
Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----- 317
L + E+ Y +G ++++++ AN+ + +G + LF E
Sbjct: 236 EQLLDLYDNEVEYTESIY--DEIGWT-EDVKRFLRYNANKAMNNLGYDGLFPVEETRVSA 292
Query: 318 ------NPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
NP + +FF + Y + D
Sbjct: 293 AILAALNP--------GGDENHDFFSGSGSSYVIGKAETTTDD 327
>gi|229057079|ref|ZP_04196471.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
AH603]
gi|228720220|gb|EEL71799.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
AH603]
Length = 322
Score = 143 bits (359), Expect = 6e-32, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 126/309 (40%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q +++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFTELSAKEQQEVQTETQELLMELYEIELAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|229029125|ref|ZP_04185222.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
AH1271]
gi|228732183|gb|EEL83068.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
AH1271]
Length = 322
Score = 143 bits (359), Expect = 6e-32, Method: Composition-based stats.
Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TGYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + Q+ E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQLFTELSAEDQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|238796650|ref|ZP_04640156.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
mollaretii ATCC 43969]
gi|238719381|gb|EEQ11191.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
mollaretii ATCC 43969]
Length = 323
Score = 143 bits (359), Expect = 6e-32, Method: Composition-based stats.
Identities = 59/330 (17%), Positives = 123/330 (37%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W + LT +E+ + R
Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ + P +F EAVH+ ++ I ++L + + +
Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA+ LQ+ V E FY+GF +
Sbjct: 131 ENGPLQKKADIILQHYHNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + + +E + + +L +
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNNRRQEIKNFAFDLLQDLYD 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y + K VG ++++ + AN+ +G E LF ++ +P +
Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPSSQAAVSPAILAALSP 292
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322
>gi|312262463|gb|ADQ52758.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage PX29]
Length = 376
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 62/316 (19%), Positives = 121/316 (38%), Gaps = 25/316 (7%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
+K+ + + + W P EV + D + + L++ E+ + +NL + + +S+
Sbjct: 31 VKHPAIDKLTERSLSFFWRPEEVDLSKDAIDY---SRLSEQEQYVFTQNLKYQSLLDSVQ 87
Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
L +S+ ++ +F E +HS ++ +I+ +L +D +F+ I
Sbjct: 88 GRAPNLVFLPIVSDVALETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDAKIM 147
Query: 157 AKANWALQYTQTLS--------------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
A+A QY L SP +E + E M FY
Sbjct: 148 ARATSVTQYYDDLISELKTYDLLRQSVFSPELRVAQLTNVKEAMYLAMHAVNALEAMRFY 207
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQ 258
FA S G M G A+ + I RDE LHL +I + + + +
Sbjct: 208 VSFACTFSFGERGLMEGNAKIMRLIARDEQLHLKGTQYLIRAWQNGDDDSEMVDIARRLE 267
Query: 259 QKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316
K+ ++ E E +A + + GL+ Y+ ++ R +GL +
Sbjct: 268 SKAVSIFIEVAEQEKEWAKDLLGNVSIPGLSLAEMIDYIDYLTGSRMRSVGLPVPDEVNV 327
Query: 317 --ENPFPWMSEVIDLK 330
++P PW+ + ++
Sbjct: 328 PIKHPLPWIRKWLNSD 343
>gi|16130590|ref|NP_417162.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Escherichia coli str. K-12 substr. MG1655]
gi|74313247|ref|YP_311666.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sonnei
Ss046]
gi|89109469|ref|AP_003249.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
[Escherichia coli str. K-12 substr. W3110]
gi|157162127|ref|YP_001459445.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
HS]
gi|170019072|ref|YP_001724026.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
ATCC 8739]
gi|170082262|ref|YP_001731582.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Escherichia coli str. K-12 substr. DH10B]
gi|188492563|ref|ZP_02999833.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli 53638]
gi|193065983|ref|ZP_03047042.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli E22]
gi|193070996|ref|ZP_03051924.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli E110019]
gi|194427830|ref|ZP_03060376.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli B171]
gi|194439440|ref|ZP_03071516.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli 101-1]
gi|209920120|ref|YP_002294204.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
SE11]
gi|218696273|ref|YP_002403940.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
55989]
gi|238901820|ref|YP_002927616.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Escherichia coli BW2952]
gi|256019542|ref|ZP_05433407.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
gi|256024812|ref|ZP_05438677.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
4_1_40B]
gi|260845324|ref|YP_003223102.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
coli O103:H2 str. 12009]
gi|293448994|ref|ZP_06663415.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
gi|300906827|ref|ZP_07124508.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 84-1]
gi|300916824|ref|ZP_07133528.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 115-1]
gi|300922750|ref|ZP_07138839.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 182-1]
gi|300930529|ref|ZP_07145925.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 187-1]
gi|300949072|ref|ZP_07163119.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 116-1]
gi|300957447|ref|ZP_07169660.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 175-1]
gi|301026690|ref|ZP_07190101.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 196-1]
gi|301306007|ref|ZP_07212087.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 124-1]
gi|301327384|ref|ZP_07220633.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 78-1]
gi|301645345|ref|ZP_07245292.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 146-1]
gi|307139368|ref|ZP_07498724.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
H736]
gi|307314435|ref|ZP_07594040.1| Ribonucleoside-diphosphate reductase [Escherichia coli W]
gi|312973113|ref|ZP_07787286.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli 1827-70]
gi|331643364|ref|ZP_08344495.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli H736]
gi|331669414|ref|ZP_08370260.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli TA271]
gi|331678654|ref|ZP_08379328.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli H591]
gi|332280666|ref|ZP_08393079.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
gi|2507306|sp|P37146|RIR4_ECOLI RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta;
AltName: Full=R2F protein; AltName: Full=Ribonucleotide
reductase 2
gi|303325061|pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli
gi|303325062|pdb|3N38|A Chain A, Ribonucleotide Reductase Nrdf From Escherichia Coli Soaked
With Ferrous Ions
gi|303325063|pdb|3N39|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
gi|303325065|pdb|3N39|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
gi|303325067|pdb|3N3A|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
gi|303325069|pdb|3N3A|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
gi|303325071|pdb|3N3B|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
gi|303325073|pdb|3N3B|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
gi|1789031|gb|AAC75723.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Escherichia coli str. K-12 substr. MG1655]
gi|1800064|dbj|BAA16541.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
[Escherichia coli str. K12 substr. W3110]
gi|73856724|gb|AAZ89431.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Shigella
sonnei Ss046]
gi|157067807|gb|ABV07062.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli HS]
gi|169754000|gb|ACA76699.1| Ribonucleoside-diphosphate reductase [Escherichia coli ATCC 8739]
gi|169890097|gb|ACB03804.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Escherichia coli str. K-12 substr. DH10B]
gi|188487762|gb|EDU62865.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli 53638]
gi|192926397|gb|EDV81032.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli E22]
gi|192955654|gb|EDV86129.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli E110019]
gi|194414063|gb|EDX30339.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli B171]
gi|194421616|gb|EDX37627.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli 101-1]
gi|209762244|gb|ACI79434.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
coli]
gi|209913379|dbj|BAG78453.1| ribonucleoside-diphosphate reductase beta subunit [Escherichia coli
SE11]
gi|218353005|emb|CAU98821.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
[Escherichia coli 55989]
gi|238863480|gb|ACR65478.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Escherichia coli BW2952]
gi|257760471|dbj|BAI31968.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
coli O103:H2 str. 12009]
gi|291322084|gb|EFE61513.1| ribonucleoside-diphosphate reductase [Escherichia coli B088]
gi|299879612|gb|EFI87823.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 196-1]
gi|300315803|gb|EFJ65587.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 175-1]
gi|300401428|gb|EFJ84966.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 84-1]
gi|300415890|gb|EFJ99200.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 115-1]
gi|300420935|gb|EFK04246.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 182-1]
gi|300451458|gb|EFK15078.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 116-1]
gi|300461585|gb|EFK25078.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 187-1]
gi|300838718|gb|EFK66478.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 124-1]
gi|300846038|gb|EFK73798.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 78-1]
gi|301076379|gb|EFK91185.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 146-1]
gi|306906003|gb|EFN36524.1| Ribonucleoside-diphosphate reductase [Escherichia coli W]
gi|309703041|emb|CBJ02373.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
ETEC H10407]
gi|310333055|gb|EFQ00269.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli 1827-70]
gi|315061957|gb|ADT76284.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
[Escherichia coli W]
gi|315254452|gb|EFU34420.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 85-1]
gi|315615063|gb|EFU95700.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli 3431]
gi|320198428|gb|EFW73030.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
EC4100B]
gi|320656721|gb|EFX24609.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320662264|gb|EFX29661.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O55:H7 str. USDA 5905]
gi|320667315|gb|EFX34273.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. LSU-61]
gi|323173041|gb|EFZ58672.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli LT-68]
gi|323183202|gb|EFZ68599.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli 1357]
gi|323377462|gb|ADX49730.1| Ribonucleoside-diphosphate reductase [Escherichia coli KO11]
gi|323935630|gb|EGB31947.1| ribonucleotide reductase [Escherichia coli E1520]
gi|323946352|gb|EGB42381.1| ribonucleotide reductase [Escherichia coli H120]
gi|323960578|gb|EGB56205.1| ribonucleotide reductase [Escherichia coli H489]
gi|323971479|gb|EGB66714.1| ribonucleotide reductase [Escherichia coli TA007]
gi|324020305|gb|EGB89524.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 117-3]
gi|324120035|gb|EGC13912.1| ribonucleotide reductase [Escherichia coli E1167]
gi|331036835|gb|EGI09059.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli H736]
gi|331063082|gb|EGI34995.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli TA271]
gi|331073484|gb|EGI44805.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli H591]
gi|332103018|gb|EGJ06364.1| ribonucleotide-diphosphate reductase subunit beta [Shigella sp. D9]
gi|332344558|gb|AEE57892.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli UMNK88]
Length = 319
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|218680499|ref|ZP_03528396.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli
CIAT 894]
Length = 324
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 63/347 (18%), Positives = 123/347 (35%), Gaps = 35/347 (10%)
Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+N+ K + R+ + N++ K W N W+P +VP+ +D+ W + LT
Sbjct: 1 MNISIKPISRVRAINWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LT 54
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
E+ + R +++ + + P L +F EAVH+ ++ I
Sbjct: 55 AAEQQLTIRVFTGLTLLDTIQNGVGSIRLMEDAITPHEEAVLSNVSFMEAVHARSYSSIF 114
Query: 136 TSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
++L + E + K+ ++ +
Sbjct: 115 STLCSTPDVDNAYRWSEENEFLQRKSALIMEQYASGDPLKKKV---------------AS 159
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
V E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 160 VFLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLELLGEER 219
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+E + + +L E E Y + VGL ++++ + AN+ +G E LF
Sbjct: 220 RQELKDFAFDLLLELYDNEARYTEALYDR--VGLT-EDVKEFLHYNANKALMNLGYEALF 276
Query: 314 KYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
NP + + + +FF + Y G + WD
Sbjct: 277 PAEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323
>gi|158518255|gb|AAC48087.2| Hypothetical protein F58F9.1 [Caenorhabditis elegans]
Length = 500
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 19/209 (9%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L ++ + P+ + WE Y A W EV + D++ W+ LT DER
Sbjct: 307 EPLLAPNNNRFVVHPIVHRDIWEFYKKAVACFWTSEEVDLGKDMSHWE---ILTSDERQF 363
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
I L FFA+S+ +V N+ + E R + Q E +HS + ++ + D
Sbjct: 364 ISSILAFFAASDGIVTENLCSRFSTEVQVTEARFFYGFQIAVENIHSEMYAKLLEAYIRD 423
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ E LFN I AKA+W L++ D + F + L V EG
Sbjct: 424 DAERNILFNAITTFKFIKAKADWCLRWI------------SDHNAPFSERLAAVAAV-EG 470
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYI 227
++F + FA I L + + G+ + I
Sbjct: 471 IFFSSSFAAIFWLKKRGLLPGLTHSNELI 499
>gi|163939261|ref|YP_001644145.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
weihenstephanensis KBAB4]
gi|229010750|ref|ZP_04167947.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
DSM 2048]
gi|229132251|ref|ZP_04261107.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
BDRD-ST196]
gi|229166287|ref|ZP_04294046.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
AH621]
gi|163861458|gb|ABY42517.1| Ribonucleoside-diphosphate reductase [Bacillus weihenstephanensis
KBAB4]
gi|228617232|gb|EEK74298.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
AH621]
gi|228651189|gb|EEL07168.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
BDRD-ST196]
gi|228750424|gb|EEM00253.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus mycoides
DSM 2048]
Length = 322
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 126/309 (40%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q +++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFTELSAEEQQEVQTETQELLMELYEIELAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|284922618|emb|CBG35706.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
042]
Length = 319
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQKLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMKKISQAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|320173468|gb|EFW48667.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
dysenteriae CDC 74-1112]
Length = 319
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKNFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|261753311|ref|ZP_05997020.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
bv. 3 str. 686]
gi|261743064|gb|EEY30990.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
bv. 3 str. 686]
Length = 327
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 58/330 (17%), Positives = 115/330 (34%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ W++ L E+ + R
Sbjct: 18 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 71
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + + P L +F EAVH+ ++ I ++L L + +
Sbjct: 72 TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 131
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + K+ L V E FY+GF
Sbjct: 132 WSEENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYL 176
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 177 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 236
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 237 LYDNEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 293
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 294 LSPNADENHDFFSGSGSSYVIGKAVATEDE 323
>gi|218706176|ref|YP_002413695.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
UMN026]
gi|293406173|ref|ZP_06650099.1| ribonucleotide reductase beta subunit [Escherichia coli FVEC1412]
gi|298381910|ref|ZP_06991507.1| ribonucleoside-diphosphate reductase subunit beta [Escherichia coli
FVEC1302]
gi|300898656|ref|ZP_07116977.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 198-1]
gi|301019059|ref|ZP_07183270.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 69-1]
gi|331674197|ref|ZP_08374957.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli TA280]
gi|218433273|emb|CAR14173.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
[Escherichia coli UMN026]
gi|291426179|gb|EFE99211.1| ribonucleotide reductase beta subunit [Escherichia coli FVEC1412]
gi|298277050|gb|EFI18566.1| ribonucleoside-diphosphate reductase subunit beta [Escherichia coli
FVEC1302]
gi|300357684|gb|EFJ73554.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 198-1]
gi|300399412|gb|EFJ82950.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 69-1]
gi|331068291|gb|EGI39686.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli TA280]
Length = 319
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 121/326 (37%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDNPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKSQEKISQAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|15803196|ref|NP_289228.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 EDL933]
gi|15832793|ref|NP_311566.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. Sakai]
gi|168750919|ref|ZP_02775941.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4113]
gi|168755421|ref|ZP_02780428.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4401]
gi|168762471|ref|ZP_02787478.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4501]
gi|168768767|ref|ZP_02793774.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4486]
gi|168774792|ref|ZP_02799799.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4196]
gi|168778658|ref|ZP_02803665.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4076]
gi|168787931|ref|ZP_02812938.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC869]
gi|168800561|ref|ZP_02825568.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC508]
gi|195938430|ref|ZP_03083812.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. EC4024]
gi|208808703|ref|ZP_03251040.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4206]
gi|208813382|ref|ZP_03254711.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4045]
gi|208819985|ref|ZP_03260305.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4042]
gi|209400851|ref|YP_002272142.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4115]
gi|217327155|ref|ZP_03443238.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. TW14588]
gi|254794623|ref|YP_003079460.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. TW14359]
gi|261225973|ref|ZP_05940254.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Escherichia coli O157:H7 str. FRIK2000]
gi|261256769|ref|ZP_05949302.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Escherichia coli O157:H7 str. FRIK966]
gi|12517115|gb|AAG57786.1|AE005496_9 ribonucleoside-diphosphate reductase 2, beta chain [Escherichia
coli O157:H7 str. EDL933]
gi|13363010|dbj|BAB36962.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
O157:H7 str. Sakai]
gi|187769524|gb|EDU33368.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4196]
gi|188015002|gb|EDU53124.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4113]
gi|189003218|gb|EDU72204.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4076]
gi|189357305|gb|EDU75724.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4401]
gi|189362069|gb|EDU80488.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4486]
gi|189367242|gb|EDU85658.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4501]
gi|189372097|gb|EDU90513.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC869]
gi|189377142|gb|EDU95558.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC508]
gi|208728504|gb|EDZ78105.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4206]
gi|208734659|gb|EDZ83346.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4045]
gi|208740108|gb|EDZ87790.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4042]
gi|209162251|gb|ACI39684.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. EC4115]
gi|209762240|gb|ACI79432.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
coli]
gi|209762242|gb|ACI79433.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
coli]
gi|209762246|gb|ACI79435.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia
coli]
gi|217319522|gb|EEC27947.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli O157:H7 str. TW14588]
gi|254594023|gb|ACT73384.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Escherichia coli O157:H7 str. TW14359]
gi|320189007|gb|EFW63666.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. EC1212]
gi|320640665|gb|EFX10201.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. G5101]
gi|326338609|gb|EGD62435.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. 1044]
gi|326342863|gb|EGD66631.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O157:H7 str. 1125]
Length = 319
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|187734239|ref|YP_001881572.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
CDC 3083-94]
gi|187431231|gb|ACD10505.1| ribonucleoside-diphosphate reductase, beta subunit [Shigella boydii
CDC 3083-94]
Length = 319
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETSW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|323159821|gb|EFZ45793.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli E128010]
Length = 319
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K++ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLINTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|331648397|ref|ZP_08349485.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli M605]
gi|331042144|gb|EGI14286.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli M605]
Length = 319
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQTRREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|253772463|ref|YP_003035294.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162613|ref|YP_003045721.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
B str. REL606]
gi|297519661|ref|ZP_06938047.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
OP50]
gi|242378238|emb|CAQ33013.1| nrdF, subunit of ribonucleoside-diphosphate reductase 2, beta
subunit dimer and ribonucleoside-diphosphate reductase 2
[Escherichia coli BL21(DE3)]
gi|253323507|gb|ACT28109.1| Ribonucleoside-diphosphate reductase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974514|gb|ACT40185.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
B str. REL606]
gi|253978681|gb|ACT44351.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
BL21(DE3)]
Length = 319
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G +PLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYKPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|215487997|ref|YP_002330428.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O127:H6 str. E2348/69]
gi|215266069|emb|CAS10489.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
[Escherichia coli O127:H6 str. E2348/69]
Length = 319
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|325677552|ref|ZP_08157215.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
ATCC 33707]
gi|325551623|gb|EGD21322.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
ATCC 33707]
Length = 322
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 73/332 (21%), Positives = 127/332 (38%), Gaps = 34/332 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P ++P+ +DLA W + LTD ER M R
Sbjct: 13 NWNRVPDPKDAEVWD---RLTGNFWLPEKIPLSNDLASWAT---LTDTEREMTIRVFTGL 66
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFN 147
++ A +A+ P L AF E+VH+ ++ I ++L F
Sbjct: 67 TLLDTAQATVGAVAMIADAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTRQIDAAFE 126
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
P + KA + Y + + + V+ E FY+GF
Sbjct: 127 WSERNPHLQRKAQIVVDYYRGDDALARK---------------AASVMLESFLFYSGFYL 171
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + ++ + +L
Sbjct: 172 PMYWASHGKLTNTADLIRLIIRDEAVHGYYIGYKCRKALERLDASARDAHRRYTYALLET 231
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+AYA + VG A YM+F AN+ +G EP+F+ +E NP +
Sbjct: 232 LYANEVAYAADLY--DEVGWTAEVVS-YMRFNANKALANLGYEPMFRASECQVNPAILSA 288
Query: 325 EVIDLKKEKNFFETRVTEY----QQGAE-LKW 351
+ +FF + Y Q+ E + W
Sbjct: 289 LDPGAGENHDFFSGSGSAYVIGKQKPTEDVDW 320
>gi|326336655|ref|ZP_08202823.1| ribonucleoside-diphosphate reductase [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325691125|gb|EGD33096.1| ribonucleoside-diphosphate reductase [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 319
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 70/320 (21%), Positives = 115/320 (35%), Gaps = 23/320 (7%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y + W+ +EV D+ +KS L+ E+ +KR L A
Sbjct: 7 RENYKPFEYPEVMKFVDMMHQTFWVHSEVEFTADIQDFKS--NLSLIEKEAVKRALLGIA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E +Y PE A E HS + ++ LG + F
Sbjct: 65 QVEV-AVKTFWGDLYDIFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNNE--FETLL 121
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
EVP + +Y + ++ + F ++ E ++ FA ILS
Sbjct: 122 EVPIFKERNGVLKEYL------------AKNRENAMERILFFTLIIENASLFSQFATILS 169
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
R M +A + DE +H N GI ++ I ENP TK ++++ + E
Sbjct: 170 FTRFKGYMKNVANIIAWTSIDEQVHANAGIYILKTIFEENPEFRTKA-KEEATQFIREYI 228
Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
LLE +G + YM++ + Q+ L F T P W E
Sbjct: 229 LLEDKMLDWIFEEGELDFFTKKDLANYMRYRLDDALTQLDLGKPFGITAEEAKPMLWFEE 288
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
+ + + +FF R T Y +
Sbjct: 289 EVFVNELDDFFAKRPTAYTK 308
>gi|281179683|dbj|BAI56013.1| ribonucleoside-diphosphate reductase beta subunit [Escherichia coli
SE15]
Length = 319
Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|190893561|ref|YP_001980103.1| ribonucleoside-diphosphate reductase, beta subunit [Rhizobium etli
CIAT 652]
gi|190698840|gb|ACE92925.1| ribonucleoside-diphosphate reductase protein, beta subunit
[Rhizobium etli CIAT 652]
Length = 324
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 61/347 (17%), Positives = 124/347 (35%), Gaps = 35/347 (10%)
Query: 17 VNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+N+ K + R+ + N++ K W N W+P +VP+ +D+ W + LT
Sbjct: 1 MNISIKPISRVRAINWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LT 54
Query: 76 DDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
E+ + R +++ + + P L +F EAVH+ ++ I
Sbjct: 55 AAEQQLTIRVFTGLTLLDTIQNGVGAIRLMEDAMTPHEEAVLSNVSFMEAVHARSYSSIF 114
Query: 136 TSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
++L + + E + K+ ++ + +
Sbjct: 115 STLCSTPDIDDAYRWSEENEFLQRKSALIMEQYGSGDALKKKV---------------AS 159
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
V E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 160 VFLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEER 219
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
++ + + +L E E Y +GL ++++ + AN+ +G E LF
Sbjct: 220 RQQIKDFAFDLLLELYDNEARYTEALYDG--LGLT-EDVKKFLHYNANKALMNLGYEALF 276
Query: 314 KYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
NP + + + +FF + Y G + WD
Sbjct: 277 PAEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323
>gi|293412034|ref|ZP_06654757.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
gi|291468805|gb|EFF11296.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
Length = 319
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|332087397|gb|EGI92525.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
boydii 5216-82]
Length = 319
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ ++ LT E+ + R
Sbjct: 10 NWNKITDDKDLEVWN---RLTSNFWLPEKVPLSNDIP---ARQTLTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + P +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKIPLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|300941043|ref|ZP_07155562.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 21-1]
gi|300454207|gb|EFK17700.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 21-1]
Length = 319
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKNFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|163844498|ref|YP_001622153.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
ATCC 23445]
gi|163675221|gb|ABY39331.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 329
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 58/330 (17%), Positives = 115/330 (34%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ W++ L E+ + R
Sbjct: 20 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + + P L +F EAVH+ ++ I ++L L + +
Sbjct: 74 TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 133
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + K+ L V E FY+GF
Sbjct: 134 WSEENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYL 178
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 179 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 238
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 239 LYDNEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 295
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAVATEDE 325
>gi|94676795|ref|YP_588829.1| ribonucleotide-diphosphate reductase subunit beta [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
gi|94219945|gb|ABF14104.1| ribonucleoside-diphosphate reductase, beta subunit [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
Length = 376
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 69/338 (20%), Positives = 130/338 (38%), Gaps = 24/338 (7%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
+ +K + + L +V + KY + + W P EV + D ++
Sbjct: 6 FSPKKNNQLLEPMFLGQSVNVVRFDQQKYESFEKLIEKQLSFFWRPEEVDISLDRIDYQ- 64
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
L E+ + N+ + +S+ + +A+ +S PE ++ AF E +HS +
Sbjct: 65 --ALPQHEKHIFISNIKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRS 122
Query: 131 FQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFLQDL 189
+ +II ++ D +F+ I +A + L + + + + L
Sbjct: 123 YTHIIRNIVNDPSLVFDDIVTNTEILKRAKDIAAFYDDLIQMTSYFHLFGEGNHSINGKL 182
Query: 190 FVFYV---------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 183 VIVNQHELKKKLYLCLMSINALEAIRFYVSFACSFAFAERKLMEGNAKIIRLIARDEALH 242
Query: 235 LNFGIDVINQIK--IENPHLWTK--EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
L ++N ++ ++P + E Q S + A E +A G +GLN
Sbjct: 243 LAGTQHMLNLMRLGKDDPEMADIALECQHDSYHLFLXAANQEKDWASYLFRDGSMIGLNE 302
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R + L+ F NP PW++ +
Sbjct: 303 EILCQYIEYITNIRMQAVLLDLPFATRSNPIPWINSWL 340
>gi|327189837|gb|EGE56975.1| ribonucleoside-diphosphate reductase protein, beta subunit
[Rhizobium etli CNPAF512]
Length = 324
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 58/330 (17%), Positives = 114/330 (34%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 15 NWNRIEDEKDLEVWNRLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGLTLL 71
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + + P L +F EAVH+ ++ I ++L + +
Sbjct: 72 DTIQNGVGAIRLMEDAMTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYRWSE 131
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + K+ ++ + V E FY+GF +
Sbjct: 132 ENEFLQRKSALIMEQYGSGDPLKKKV---------------ASVFLESFLFYSGFYLPMY 176
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 177 WSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEERRQEIKDFAFDLLLELYD 236
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 237 NEARYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSP 293
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 294 NADENHDFFSGSGSSYVIGKAVATEDEDWD 323
>gi|331658787|ref|ZP_08359729.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli TA206]
gi|315298701|gb|EFU57955.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 16-3]
gi|331053369|gb|EGI25398.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli TA206]
Length = 319
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLLPDTLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFASRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|209551073|ref|YP_002282990.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209536829|gb|ACI56764.1| Ribonucleoside-diphosphate reductase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 324
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 60/333 (18%), Positives = 116/333 (34%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 15 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + + P L +F EAVH+ ++ I ++L + +
Sbjct: 69 TLLDTIQNGVGAVGLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + K+ ++ + V E FY+GF
Sbjct: 129 WSEENEFLQRKSTLIIEQYRCGDPLKKKV---------------ASVFLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEERKQEIKDFAFDLLLE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 234 LYDNEARYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323
>gi|191167101|ref|ZP_03028922.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli B7A]
gi|260856787|ref|YP_003230678.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
coli O26:H11 str. 11368]
gi|309795135|ref|ZP_07689554.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 145-7]
gi|331664233|ref|ZP_08365139.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli TA143]
gi|190902883|gb|EDV62611.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli B7A]
gi|257755436|dbj|BAI26938.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
coli O26:H11 str. 11368]
gi|308121106|gb|EFO58368.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 145-7]
gi|323154887|gb|EFZ41079.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli EPECa14]
gi|331058164|gb|EGI30145.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli TA143]
Length = 319
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|197284313|ref|YP_002150185.1| ribonucleotide-diphosphate reductase subunit beta [Proteus
mirabilis HI4320]
gi|194681800|emb|CAR41036.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis
HI4320]
Length = 322
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 61/335 (18%), Positives = 120/335 (35%), Gaps = 31/335 (9%)
Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
R + ++ E + N W+P ++P+ +D+ W + LT E+ + R
Sbjct: 8 RVNAINWNRIEDEKDLEVWNRLTMNFWLPEKIPLSNDIPSWNT---LTQAEKQLTIRVFT 64
Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--EL 145
+++ + P L F EAVH+ ++ I ++L L +
Sbjct: 65 GLTLLDTIQNTVGAPTLMPDAQTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDDA 124
Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
+ E + K++ L+Y Q V E FY+GF
Sbjct: 125 YRWSEENTYLQKKSDIILRYYQDSDPLKKKI---------------ASVFLESFLFYSGF 169
Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
+ K+ A+ + I+RDE++H + + L + + + ++L
Sbjct: 170 YLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQNQLLNKSSLEKQNIKDFAFSLL 229
Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMS 324
+ E+ Y + VG ++++ + AN+ +G E LF N P +
Sbjct: 230 LDLYDNEVKYTEDLY--DSVGWT-EDVKKFLHYNANKALMNLGYEALFPDEITNVSPAIL 286
Query: 325 EVI--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ D + +FF + Y G + WD
Sbjct: 287 SSLSPDANENHDFFSGSGSSYVIGKTINTEDDDWD 321
>gi|260869355|ref|YP_003235757.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
coli O111:H- str. 11128]
gi|257765711|dbj|BAI37206.1| ribonucleoside-diphosphate reductase 2, beta subunit [Escherichia
coli O111:H- str. 11128]
gi|323180097|gb|EFZ65649.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli 1180]
Length = 319
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y +E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTNELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|261342124|ref|ZP_05969982.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
cancerogenus ATCC 35316]
gi|288315455|gb|EFC54393.1| ribonucleoside-diphosphate reductase, beta subunit [Enterobacter
cancerogenus ATCC 35316]
Length = 319
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 60/331 (18%), Positives = 121/331 (36%), Gaps = 33/331 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ P + +F EAVH+ ++ I ++L + ++
Sbjct: 67 DTIQNTVGAPALMSDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDTAYDWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E S+ KAN L+Y Q V E FY+GF +
Sbjct: 127 ECESLQRKANLVLEYYQADDPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + +E + + +L +
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSEARREELKGFALDLLMDLYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
E++Y G+ + ++ + AN+ +G E LF NP +
Sbjct: 232 NELSYTEALYAGSGWE----DEVKAFLCYNANKALMNLGYEALFPPDMADVNPAILAALS 287
Query: 327 IDLKKEKNFFETRVTEYQQGAELK-----WD 352
+ + +FF + Y G ++ WD
Sbjct: 288 PNADENHDFFSGSGSSYVMGKAVETEDEDWD 318
>gi|256015100|ref|YP_003105109.1| ribonucleotide-diphosphate reductase beta subunit [Brucella microti
CCM 4915]
gi|255997760|gb|ACU49447.1| ribonucleotide-diphosphate reductase beta subunit [Brucella microti
CCM 4915]
Length = 329
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 56/327 (17%), Positives = 113/327 (34%), Gaps = 28/327 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W++ L E+ + R
Sbjct: 20 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 76
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + + P L +F EAVH+ ++ I ++L L + +
Sbjct: 77 DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 136
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + K+ L V E FY+GF +
Sbjct: 137 ENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYLPMY 181
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 182 WSSRAKLTNTADLIRLIIRDEAVHGYYIGHKFQRALEVLSEEKRQEIKDFAFELLLELYD 241
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 242 NEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSP 298
Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 299 NADENHDFFSGSGSSYVIGKAVATEDE 325
>gi|331654159|ref|ZP_08355159.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli M718]
gi|331047541|gb|EGI19618.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli M718]
Length = 319
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILTA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|17989274|ref|NP_541907.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
melitensis bv. 1 str. 16M]
gi|17985137|gb|AAL54171.1| ribonucleoside-diphosphate reductase beta chain [Brucella
melitensis bv. 1 str. 16M]
Length = 335
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 56/327 (17%), Positives = 113/327 (34%), Gaps = 28/327 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W++ L E+ + R
Sbjct: 26 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTTRVFTGLTLL 82
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + + P L +F EAVH+ ++ I ++L L + +
Sbjct: 83 DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 142
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + K+ L V E FY+GF +
Sbjct: 143 ENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYLPMY 187
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 188 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLELYD 247
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 248 NEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSP 304
Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 305 NADENHDFFSGSGSSYVIGKAVATEDE 331
>gi|300741626|ref|ZP_07071647.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
dentocariosa M567]
gi|300380811|gb|EFJ77373.1| ribonucleoside-diphosphate reductase, beta subunit [Rothia
dentocariosa M567]
Length = 325
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 132/349 (37%), Gaps = 36/349 (10%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
++V++ D + + N+L K W+ N W+P +VP+ +D+ WK+
Sbjct: 2 SEKVHLVDHPI--EAINWNRLEDDKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT--- 53
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT +E+ + R +++ +++ AF E+VH+ ++
Sbjct: 54 LTAEEKELTMRVFTGLTLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSS 113
Query: 134 IITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
I ++L + + F E + KA L Y
Sbjct: 114 IFSTLSSTKEIDDAFRWASENEHLQKKAKIILAYYTGDDPLKKKV--------------- 158
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
+ E FY+GF + K+ A+ + I+RDE++H + + +
Sbjct: 159 ASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKESP 218
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
E ++ + +L+E E+AY H VG + ++++ + AN+ +G E
Sbjct: 219 ERQAELKEYTFNLLYELYENEVAYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEA 275
Query: 312 LFKYT-ENPFPWMSEVI--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+F + N P + + + + +FF + Y G + WD
Sbjct: 276 MFPASVTNVSPAILSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324
>gi|311113720|ref|YP_003984942.1| ribonucleotide-diphosphate reductase subunit beta [Rothia
dentocariosa ATCC 17931]
gi|310945214|gb|ADP41508.1| ribonucleotide-diphosphate reductase subunit beta [Rothia
dentocariosa ATCC 17931]
Length = 325
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/349 (18%), Positives = 132/349 (37%), Gaps = 36/349 (10%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
++V++ D + + N+L K W+ N W+P +VP+ +D+ WK+
Sbjct: 2 SEKVHLVDHPI--EAINWNRLEDDKDLEVWD---RLTGNFWLPEKVPLSNDVPSWKT--- 53
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
LT +E+ + R +++ +++ AF E+VH+ ++
Sbjct: 54 LTAEEKELTMRVFTGLTLLDTIQGTVGAVSLLPDAVTAHEEAVYTNIAFMESVHAKSYSS 113
Query: 134 IITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
I ++L + + F E + KA L Y
Sbjct: 114 IFSTLSSTKEIDDAFRWASENEHLQKKAKIILAYYTGDDPLKKKV--------------- 158
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
+ E FY+GF + K+ A+ + I+RDE++H + + +
Sbjct: 159 ASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKESP 218
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
E ++ + +L+E E++Y H VG + ++++ + AN+ +G E
Sbjct: 219 ERQAELKEYTFNLLYELYENEVSYTHSLYDG--VGWS-EDVKKFLHYNANKALMNLGYEA 275
Query: 312 LFKYT-ENPFPWMSEVI--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+F + N P + + + + +FF + Y G + WD
Sbjct: 276 MFPASVTNVSPAILSALSPNADENHDFFSGSGSSYVIGKAVNTEDEDWD 324
>gi|157371959|ref|YP_001479948.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
proteamaculans 568]
gi|157323723|gb|ABV42820.1| Ribonucleoside-diphosphate reductase [Serratia proteamaculans 568]
Length = 323
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/330 (17%), Positives = 118/330 (35%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W +N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 14 NWNIIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPSWAT---LTPKEQQLTIRVFTGL 67
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A+ P +F EAVH+ ++ I ++L + +
Sbjct: 68 TLLDTIQNTVGAPALIADAITPHEEAVYSNISFMEAVHARSYSSIFSTLCQTPDVDDAYR 127
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA+ L + ++ V E FY+GF
Sbjct: 128 WSEENRALQKKASIILAHYRSDDPLMKKV---------------ASVFLESFLFYSGFYL 172
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + ++ + + +L +
Sbjct: 173 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDAARRQQVKNFAFDLLQD 232
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E VG + ++ + AN+ +G E LF NP +
Sbjct: 233 LYDNEVRYTEELYDG--VGWT-EDVKTFLHYNANKALMNLGYEALFPPSMAEVNPAILSA 289
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 290 LSPNADENHDFFSGSGSSYVIGKAVNTEDD 319
>gi|306840845|ref|ZP_07473592.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
BO2]
gi|306289240|gb|EFM60489.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
BO2]
Length = 327
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/330 (17%), Positives = 116/330 (35%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ W++ L E+ + R
Sbjct: 18 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 71
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + + P L +F EAVH+ ++ I ++L L + +
Sbjct: 72 TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 131
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + K+ L + V E FY+GF
Sbjct: 132 WSEENEFLQRKSTLILDQYHADNPLKKKI---------------ASVFLESFLFYSGFYL 176
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 177 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 236
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 237 LYDNEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 293
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 294 LSPNADENHDFFSGSGSSYVIGKAVATEDE 323
>gi|153949141|ref|YP_001400043.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
pseudotuberculosis IP 31758]
gi|152960636|gb|ABS48097.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia
pseudotuberculosis IP 31758]
Length = 323
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/330 (17%), Positives = 122/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 14 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LTPHEQQLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ + P +F EAVH+ ++ I ++L L + +
Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + KA+ LQ+ V E FY+GF +
Sbjct: 131 DNGPLQKKADIILQHYHNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + + +E + + +L +
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDSVHRQEIKNFAFDLLQDLYD 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y + VG ++++ + AN+ +G E LF ++ +P +
Sbjct: 236 NEVRYTEDLYDH--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322
>gi|324005772|gb|EGB74991.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 57-2]
Length = 319
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETTW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|253689503|ref|YP_003018693.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251756081|gb|ACT14157.1| Ribonucleoside-diphosphate reductase [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 320
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 59/330 (17%), Positives = 120/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W + L ER + R
Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWST---LNARERQLTIRVFTGLTLL 67
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ + P L +F EAVH+ ++ I ++L L + +
Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P++ K++ L + ++ V E FY+GF +
Sbjct: 128 ENPALQKKSDIILSHYRSDDPLMKKV---------------ASVFLESFLFYSGFYLPMY 172
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + ++ + + +L +
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKADPARQQQVKNFAYDLLQDLYD 232
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+ Y E VG ++++ + AN+ +G E LF NP +
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319
>gi|25027435|ref|NP_737489.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
efficiens YS-314]
gi|259506419|ref|ZP_05749321.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
[Corynebacterium efficiens YS-314]
gi|23492716|dbj|BAC17689.1| putative ribonucleotide reductase [Corynebacterium efficiens
YS-314]
gi|259165992|gb|EEW50546.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
[Corynebacterium efficiens YS-314]
Length = 339
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/319 (18%), Positives = 120/319 (37%), Gaps = 30/319 (9%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
+ + N W+P ++P+ +D+ W S +++ E L R +++ ++
Sbjct: 40 DIWNRLTTNFWLPEKIPVSNDIQKWNS---MSEAEHLATLRVFTGLTLLDTIQGTVGAVS 96
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
+ + L +F E+VH+ ++ I +L E F R + KA
Sbjct: 97 MIPDATTHHEEAVLTNISFMESVHAKSYSNIFMTLASTPEINEAFRWSRHNEHLQYKAKR 156
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
L Y Q S+P+ + V+ E + FY+GF L + K+ A
Sbjct: 157 ILDYYQQDSTPARKK--------------IASVMLESLLFYSGFYLPLRMASIGKLTNTA 202
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I+RDE++H + + ++ +L + E+ Y
Sbjct: 203 DVIRLIIRDEAIHGYYIGYKYQKHIATLSPEKQATNHDEAVELLLDLYDNELEYTRHVYD 262
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEV-IDLKKEKNFFET 338
+G + ++++ AN+ +G E +F + F M+ + + +FF
Sbjct: 263 D--LGWS-EDVSAFLRYNANKAMQNLGYESIFPVDQCKFDPGVMTSLDPSSNENHDFFSG 319
Query: 339 RVTEYQQG-----AELKWD 352
+ Y G ++ WD
Sbjct: 320 SGSSYVIGDVEATSDEDWD 338
>gi|218701171|ref|YP_002408800.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
IAI39]
gi|218371157|emb|CAR18988.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
[Escherichia coli IAI39]
Length = 319
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLTNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|116253995|ref|YP_769833.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium
leguminosarum bv. viciae 3841]
gi|115258643|emb|CAK09747.1| putative ribonucleoside-diphosphate reductase beta subunit
[Rhizobium leguminosarum bv. viciae 3841]
Length = 324
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 15 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + + + P L +F EAVH+ ++ I ++L + +
Sbjct: 69 TLLDTIQNGVGSIRLMEDAATPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + K+ ++ ++ V E FY+GF
Sbjct: 129 WSEENEFLQRKSALIMEQYRSGDPLKKKV---------------ASVFLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMVRLIIRDEAVHGYYIGYKFQRGLERLGDERKQEIKDFAFELLLE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 234 LYDNEAKYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323
>gi|47213105|emb|CAF89525.1| unnamed protein product [Tetraodon nigroviridis]
Length = 198
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 9/183 (4%)
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
+ + + V + EG++F FA I L + M G+ +
Sbjct: 11 HRWKKADWALNWIGNQKASYGERVVAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNEL 70
Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
I RDE LH +F + + K Q ++ A +E + E +P +G
Sbjct: 71 ISRDEGLHCDFACLMFKHLL-------HKPSAQTVGAIIRNAVEIEQEFLTEALPVKLIG 123
Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
+N ++Y++F+A+R ++G ++ ENPF +M E I L+ + NFFE RV EYQ+
Sbjct: 124 MNCQLMKRYIEFVADRLLLELGFAKIY-RAENPFDFM-ENISLEGKTNFFEKRVGEYQRM 181
Query: 347 AEL 349
+
Sbjct: 182 GVM 184
>gi|23500072|ref|NP_699512.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
1330]
gi|62317763|ref|YP_223616.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 1 str. 9-941]
gi|83269749|ref|YP_419040.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
melitensis biovar Abortus 2308]
gi|148558197|ref|YP_001257348.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ovis
ATCC 25840]
gi|161620390|ref|YP_001594276.1| ribonucleotide-diphosphate reductase subunit beta [Brucella canis
ATCC 23365]
gi|189023015|ref|YP_001932756.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
S19]
gi|254691263|ref|ZP_05154517.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 6 str. 870]
gi|254695435|ref|ZP_05157263.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 3 str. Tulya]
gi|254699051|ref|ZP_05160879.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 2 str. 86/8/59]
gi|254699599|ref|ZP_05161427.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
bv. 5 str. 513]
gi|254706144|ref|ZP_05167972.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
pinnipedialis M163/99/10]
gi|254711557|ref|ZP_05173368.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
pinnipedialis B2/94]
gi|254712154|ref|ZP_05173965.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
M644/93/1]
gi|254715225|ref|ZP_05177036.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
M13/05/1]
gi|254720036|ref|ZP_05181847.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
83/13]
gi|254732497|ref|ZP_05191075.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 4 str. 292]
gi|256029807|ref|ZP_05443421.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
pinnipedialis M292/94/1]
gi|256059454|ref|ZP_05449656.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
neotomae 5K33]
gi|256157977|ref|ZP_05455895.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
M490/95/1]
gi|256253064|ref|ZP_05458600.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
B1/94]
gi|256256449|ref|ZP_05461985.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 9 str. C68]
gi|260167086|ref|ZP_05753897.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
F5/99]
gi|260544998|ref|ZP_05820819.1| ribonucleotide reductase [Brucella abortus NCTC 8038]
gi|260568371|ref|ZP_05838840.1| ribonucleotide reductase [Brucella suis bv. 4 str. 40]
gi|260756870|ref|ZP_05869218.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 6 str. 870]
gi|260760301|ref|ZP_05872649.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 4 str. 292]
gi|260763541|ref|ZP_05875873.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 2 str. 86/8/59]
gi|260882684|ref|ZP_05894298.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 9 str. C68]
gi|261215815|ref|ZP_05930096.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 3 str. Tulya]
gi|261216944|ref|ZP_05931225.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
M13/05/1]
gi|261220160|ref|ZP_05934441.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
B1/94]
gi|261313587|ref|ZP_05952784.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
pinnipedialis M163/99/10]
gi|261319174|ref|ZP_05958371.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
pinnipedialis B2/94]
gi|261319814|ref|ZP_05959011.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
M644/93/1]
gi|261323425|ref|ZP_05962622.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
neotomae 5K33]
gi|261750056|ref|ZP_05993765.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
bv. 5 str. 513]
gi|261756480|ref|ZP_06000189.1| ribonucleotide reductase [Brucella sp. F5/99]
gi|265985045|ref|ZP_06097780.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
83/13]
gi|265986823|ref|ZP_06099380.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
pinnipedialis M292/94/1]
gi|265996493|ref|ZP_06109050.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
M490/95/1]
gi|297249809|ref|ZP_06933510.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella
abortus bv. 5 str. B3196]
gi|306839412|ref|ZP_07472226.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. NF
2653]
gi|306845616|ref|ZP_07478185.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
BO1]
gi|23463663|gb|AAN33517.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella suis
1330]
gi|62197956|gb|AAX76255.1| NrdF, ribonucleoside-diphosphate reductase, beta subunit [Brucella
abortus bv. 1 str. 9-941]
gi|82940023|emb|CAJ13054.1| Ribonucleotide reductase [Brucella melitensis biovar Abortus 2308]
gi|148369482|gb|ABQ62354.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella ovis
ATCC 25840]
gi|161337201|gb|ABX63505.1| Ribonucleoside-diphosphate reductase [Brucella canis ATCC 23365]
gi|189021589|gb|ACD74310.1| Ribonucleotide reductase [Brucella abortus S19]
gi|260098269|gb|EEW82143.1| ribonucleotide reductase [Brucella abortus NCTC 8038]
gi|260155036|gb|EEW90117.1| ribonucleotide reductase [Brucella suis bv. 4 str. 40]
gi|260670619|gb|EEX57559.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 4 str. 292]
gi|260673962|gb|EEX60783.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 2 str. 86/8/59]
gi|260676978|gb|EEX63799.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 6 str. 870]
gi|260872212|gb|EEX79281.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 9 str. C68]
gi|260917422|gb|EEX84283.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
bv. 3 str. Tulya]
gi|260918744|gb|EEX85397.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
B1/94]
gi|260922033|gb|EEX88601.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
M13/05/1]
gi|261292504|gb|EEX96000.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
M644/93/1]
gi|261298397|gb|EEY01894.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
pinnipedialis B2/94]
gi|261299405|gb|EEY02902.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
neotomae 5K33]
gi|261302613|gb|EEY06110.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
pinnipedialis M163/99/10]
gi|261736464|gb|EEY24460.1| ribonucleotide reductase [Brucella sp. F5/99]
gi|261739809|gb|EEY27735.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
bv. 5 str. 513]
gi|262550790|gb|EEZ06951.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
M490/95/1]
gi|264659020|gb|EEZ29281.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
pinnipedialis M292/94/1]
gi|264663637|gb|EEZ33898.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
83/13]
gi|297173678|gb|EFH33042.1| ribonucleoside-diphosphate reductase, beta subunit [Brucella
abortus bv. 5 str. B3196]
gi|306273937|gb|EFM55764.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp.
BO1]
gi|306405535|gb|EFM61800.1| ribonucleotide-diphosphate reductase subunit beta [Brucella sp. NF
2653]
Length = 329
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/330 (17%), Positives = 115/330 (34%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ W++ L E+ + R
Sbjct: 20 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + + P L +F EAVH+ ++ I ++L L + +
Sbjct: 74 TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYR 133
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + K+ L V E FY+GF
Sbjct: 134 WSEENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYL 178
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 179 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLE 238
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 239 LYDNEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 295
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAVATEDE 325
>gi|227112968|ref|ZP_03826624.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 320
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/330 (17%), Positives = 119/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W + L ER + R
Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWST---LNARERQLTIRVFTGLTLL 67
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ + P L +F EAVH+ ++ I ++L L + +
Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ K++ L + ++ V E FY+GF +
Sbjct: 128 ENTALQKKSDIILSHYRSDDPLMKKV---------------ASVFLESFLFYSGFYLPMY 172
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + ++ + + +L +
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKVDSARHQQVKNFAYDLLQDLYD 232
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+ Y E VG ++++ + AN+ +G E LF NP +
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319
>gi|218663032|ref|ZP_03518962.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli
IE4771]
Length = 324
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 59/333 (17%), Positives = 116/333 (34%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ + W N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 15 NWNRIEDDRDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + + P L +F EAVH+ ++ I ++L + +
Sbjct: 69 TLLDTIQNGVGSIRLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + K+ ++ + V E FY+GF
Sbjct: 129 WSEENEFLQRKSVLIMEQYGSGDPLKKKI---------------ASVFLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEERRQEIKDFAFDLLLE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 234 LYDNEARYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323
>gi|183598095|ref|ZP_02959588.1| hypothetical protein PROSTU_01459 [Providencia stuartii ATCC 25827]
gi|188020253|gb|EDU58293.1| hypothetical protein PROSTU_01459 [Providencia stuartii ATCC 25827]
Length = 323
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/327 (17%), Positives = 119/327 (36%), Gaps = 28/327 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P ++P+ +D++ W + LT E+ + R
Sbjct: 14 NWNRIEDDKDLEVWNRLTTNFWLPEKIPLSNDISSWNT---LTAAEQQLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 71 DTIQNTVGAPSLMSDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTSDVDDAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ KA + Y V V E FY+GF +
Sbjct: 131 ENSALQNKAKIIMSYY---------------CDSHPLKKKVASVFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + ++ KE + + ++L +
Sbjct: 176 WSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLLKYDEKTQKEIKDFTFSLLFDLYE 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
E+ Y E VG ++++ + AN+ +G E LF +P +
Sbjct: 236 NEVNYTQELY--DTVGWT-EDVKKFLHYNANKALMNLGYEALFPDVVTDVSPAILSALSP 292
Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
D + +FF + Y + + D
Sbjct: 293 DANENHDFFSGSGSSYVIGKAVSTEDD 319
>gi|33620698|ref|NP_891801.1| aerobic NDP reductase small subunit [Enterobacteria phage RB49]
gi|33438568|gb|AAL15125.2| aerobic NDP reductase small subunit [Enterobacteria phage RB49]
Length = 386
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/353 (16%), Positives = 124/353 (35%), Gaps = 40/353 (11%)
Query: 17 VNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
V++ ++ M + ++ E + W P E+ + D +
Sbjct: 9 VDIMNEPMFLGSGLGIARYDIQ--RHQVFEELIEKQLSFFWRPEEISLATDRIQY---LN 63
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
+ D E+ NL + +S+ A +S+P +L F E +HS ++ +
Sbjct: 64 MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTH 123
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ + +D F+ + P+I +A +Y + D + ++
Sbjct: 124 IMRNCFIDPASEFDQIIDNPAIMKRAESIGKYYDDVLYWIRKYENAKEDLRYWEERDDQT 183
Query: 194 VV---------------------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
+ E + FY FA S + G A+ ++
Sbjct: 184 ALDDARRFFEDTKRDLMASIYLCAHCVNALEAIRFYVSFACTFSFAERGLLEGNAKIMKF 243
Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPK 282
I RDE LHL +I Q + +E + ++ + + E +
Sbjct: 244 IARDEQLHLKGTQYIIRQWQTGVDGDEWKQIAEELEGEATKIFLDVVEQEKEWVDHLFAM 303
Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
G L+ + Y++++A+ R GL+ F +P PWM + ++ + +N
Sbjct: 304 GAIPNLSPEILKTYVEYLADSRMRAAGLKSPFSVRRHPLPWMRKWLNSDEVQN 356
>gi|254037718|ref|ZP_04871776.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
1_1_43]
gi|226839342|gb|EEH71363.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
1_1_43]
Length = 319
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALMPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|328543067|ref|YP_004303176.1| ribonucleoside-diphosphate reductase, beta subunit [polymorphum
gilvum SL003B-26A1]
gi|326412813|gb|ADZ69876.1| Ribonucleoside-diphosphate reductase, beta subunit [Polymorphum
gilvum SL003B-26A1]
Length = 325
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/339 (19%), Positives = 123/339 (36%), Gaps = 32/339 (9%)
Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
+ + D L+ E + N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 7 IRSVPDAVNWNRLRDPKDLEIWNRLTVNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIR 63
Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-- 142
+++ A+ P L AF EAVH+ ++ + ++L
Sbjct: 64 VFTGLTLLDTIQNMIGAPALMADAITPHEEAVLTNIAFMEAVHARSYSSVFSTLCRTAEV 123
Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
+ F E P + AK+ L +P + V E FY
Sbjct: 124 DDAFRWSAENPQLQAKSRLILNEYDASGTPLKKK--------------IASVFLESFLFY 169
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
+GF + K+ A+ + I+RDE++H + + +E + +
Sbjct: 170 SGFYLPMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLETVSEAERQEIKDFAF 229
Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENP 319
+++ + +E Y VGL + ++ + AN+ +G E LF NP
Sbjct: 230 SLMFDLYAIEAKYTESLCDG--VGLT-EDVKHFLHYNANKALMNLGYEALFPDAVCAVNP 286
Query: 320 FPWMSEVI-DLKKEKNFFETRVTEYQQGAEL-----KWD 352
M+ + + + +FF + Y G + WD
Sbjct: 287 -AIMAALSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 324
>gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254039813|gb|ACT56609.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040683|gb|ACT57479.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 125
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL
Sbjct: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60
Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA
Sbjct: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120
Query: 348 ELKWD 352
ELKWD
Sbjct: 121 ELKWD 125
>gi|213962351|ref|ZP_03390614.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
sputigena Capno]
gi|213955017|gb|EEB66336.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
sputigena Capno]
Length = 319
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 70/320 (21%), Positives = 119/320 (37%), Gaps = 23/320 (7%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y E + + W+ +EV D+ +KS L+ E+ +KR L A
Sbjct: 7 RENYKPFEYPEVMEFVNAMHKSFWVHSEVEFTADIQDFKS--NLSTVEQEAVKRALLGIA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V +Y PE A E HS + ++ LG + F
Sbjct: 65 QVEVSV-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLL 121
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
EVP + N +Y + ++ + F ++ E ++ FA ILS
Sbjct: 122 EVPIFKERNNILKEYL------------AKNRENAMERILFFTLIIENASLFSQFATILS 169
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
R + +A + DE LH N GI ++ +I E P + T + ++ +
Sbjct: 170 FTRFKGYLKNVANIIAWTSIDEQLHANAGIYILKKIFEERPEMKTIA-EHEATNFIRNYI 228
Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSE 325
LLE +G + + YM++ + Q+GL+ F + P W E
Sbjct: 229 LLEDKMLDWIFEQGELEFFSKKDLANYMRYRLDDSLTQLGLDKPFNISGDEAKPMMWFEE 288
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
+ + +FF R T Y +
Sbjct: 289 EVFSNELDDFFAKRPTAYTK 308
>gi|238759171|ref|ZP_04620339.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae
ATCC 35236]
gi|238702587|gb|EEP95136.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia aldovae
ATCC 35236]
Length = 323
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/330 (17%), Positives = 123/330 (37%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P ++P+ +D+ W + LT +E+ + R
Sbjct: 14 NWNKIEDDKDLEVWNRLTSNFWLPEKIPLSNDIPSWAT---LTPNEQQLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ + P +F EAVH+ ++ I ++L + + +
Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA+ LQ+ V E FY+GF +
Sbjct: 131 ENGPLQKKADIILQHYHNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + + E + + +L +
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEKVDNARRLEIKNFAFDLLQDLYD 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y + K VG ++++ + AN+ +G E LF ++ +P +
Sbjct: 236 NEVRYTEDLYDK--VGWT-EDVKKFLHYNANKALMNLGYEALFPISQAAVSPAILAALSP 292
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322
>gi|304406354|ref|ZP_07388010.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus
YK9]
gi|304344412|gb|EFM10250.1| Ribonucleoside-diphosphate reductase [Paenibacillus curdlanolyticus
YK9]
Length = 318
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/304 (21%), Positives = 117/304 (38%), Gaps = 21/304 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+P+ DD W L+D +R + + LG +++ + I
Sbjct: 19 FWNQNIMQFWTDEEIPLSDDKMSW---IELSDAQRELYMKVLGGLTLLDTIQGGVGIPKI 75
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWA 162
H+ + + L E +H+ ++ I T+L E +F + P + KA W
Sbjct: 76 VEHVDGLQRKAVLSFMGMMEQIHAKSYSSIFTTLASTEEIDGVFAWVKTQPQLQNKAEWI 135
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y +++P V+ E FY+GF L L KM E
Sbjct: 136 SVYYNNITTPKSL-----------YLALAASVLLESYLFYSGFFYPLFLAGQGKMTSSGE 184
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H + + ++ + E + R ++ E Y E
Sbjct: 185 IIDLILRDESIHGLYVGVLAQEVYRDLTPEERGEADTELRELIDRLHANEEVYTKELYSG 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
VGL A Y+++ N+ +GL+P+F E NP + + + K+ +FF +
Sbjct: 245 --VGL-ADEVLTYVRYNCNKGLMNLGLDPIFPEEEINPIVF-NGISTRTKQHDFFSKKGN 300
Query: 342 EYQQ 345
Y +
Sbjct: 301 GYVR 304
>gi|91212037|ref|YP_542023.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
UTI89]
gi|117624912|ref|YP_853853.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
APEC O1]
gi|218559668|ref|YP_002392581.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
S88]
gi|237706702|ref|ZP_04537183.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
3_2_53FAA]
gi|91073611|gb|ABE08492.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
UTI89]
gi|115514036|gb|ABJ02111.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
APEC O1]
gi|218366437|emb|CAR04189.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
[Escherichia coli S88]
gi|226899742|gb|EEH86001.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia sp.
3_2_53FAA]
gi|294492274|gb|ADE91030.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli IHE3034]
gi|315284934|gb|EFU44379.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 110-3]
gi|323951102|gb|EGB46978.1| ribonucleotide reductase [Escherichia coli H252]
gi|323957111|gb|EGB52836.1| ribonucleotide reductase [Escherichia coli H263]
Length = 319
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 59/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + + +E + + +L E
Sbjct: 169 PMYFASRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNQEKISQAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + + + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|222102712|ref|YP_002539751.1| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium
vitis S4]
gi|221739313|gb|ACM40046.1| ribonucleoside-diphosphate reductase 2 beta chain [Agrobacterium
vitis S4]
Length = 329
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/333 (17%), Positives = 116/333 (34%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ W L +E+ + R
Sbjct: 20 NWNRINDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSW---AALKPEEQQLTIRVFTGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + + P +F EAVH+ ++ I ++L + +
Sbjct: 74 TLLDTIQTSIGAPTLMEDSITPHEEAVYSNISFMEAVHARSYSSIFSTLCSTSDVDDAYR 133
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + K+ L++ + + V E FY+GF
Sbjct: 134 WSEENEFLQKKSALILEHYRNPD---------------PLKRKIASVFLESFLFYSGFYL 178
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ ++ A+ + I+RDE++H + + +E + + +L E
Sbjct: 179 PMFWSSRARLTNTADMIRLIIRDEAVHGYYIGYKFQRGLEPLSEEQRQETKDFAFDLLLE 238
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 239 LYDNEAKYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPPEACKVNPAILSA 295
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 328
>gi|157955332|gb|ABW06043.1| NrdF [Bacillus thuringiensis serovar galleriae]
gi|157955344|gb|ABW06052.1| NrdF [Bacillus thuringiensis serovar tolworthi]
Length = 322
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYHRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|157955376|gb|ABW06076.1| NrdF [Bacillus thuringiensis serovar morrisoni]
Length = 322
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 17/309 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYHRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H F + QI E +E Q++++ +L E +E+AY E
Sbjct: 187 IINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELLMELYEIEMAYTEEIY-- 244
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL +++++ AN+ +GLEP F+ E NP ++ + K +FF +
Sbjct: 245 TSIGL-VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGN 302
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 303 GYVKATNVE 311
>gi|227502986|ref|ZP_03933035.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
49725]
gi|306836783|ref|ZP_07469743.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
accolens ATCC 49726]
gi|227076047|gb|EEI14010.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
49725]
gi|304567329|gb|EFM42934.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
accolens ATCC 49726]
Length = 329
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 62/330 (18%), Positives = 118/330 (35%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K WE N W+P +VP+ +DL WK+ LT+ E+ R
Sbjct: 20 NWNNIPDDKDLEVWE---RLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ AF E+VH+ ++ I +L + F
Sbjct: 74 TLLDTIQGTVGAISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y + E FY+GF
Sbjct: 134 WSEENENLQKKAKIILSYYNGDDPLKKKV---------------ASTLLESFLFYSGFYL 178
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + Q + +E + + + E
Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQEYKKLDEKRQEELKDYTFDLAFE 238
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
EI Y + +G ++++++ AN+ + +G E LF E +P S
Sbjct: 239 LYDNEIDYTEDLY--DELGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDD 325
>gi|152964774|ref|YP_001360558.1| ribonucleotide-diphosphate reductase subunit beta [Kineococcus
radiotolerans SRS30216]
gi|151359291|gb|ABS02294.1| Ribonucleoside-diphosphate reductase [Kineococcus radiotolerans
SRS30216]
Length = 323
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/333 (17%), Positives = 117/333 (35%), Gaps = 37/333 (11%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W +N W+P +VP+ +D+ W+ L ER + R
Sbjct: 14 NWNRLQDDKDLEIWN---RLTSNFWLPEKVPLSNDVQSWQ---NLGAQERTLTLRVFTGL 67
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P AF E+VH+ ++ I ++L E F
Sbjct: 68 TLLDTIQGTVGAVSLIPDALTPHEEAVYTNIAFMESVHARSYSSIFSTLATTREIDEAFA 127
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ ++ KA+ L+Y V + E FY+GF
Sbjct: 128 WSEDNEALQRKASIVLEYYHGDD---------------PLKRKVASTLLESFLFYSGFFL 172
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ ++ A+ + I+RDE++H + + E + + +L+E
Sbjct: 173 PMHFSSRAQLTNTADLVRLIIRDEAVHGYYIGYKFQRGLELVDQAKRDEIKDYAFELLYE 232
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
E Y + VGL + ++ + AN+ +G E +F + I
Sbjct: 233 LYDNECKYTADLYDG--VGLT-EDVKTFLHYNANKALMNLGYEGMFPSD---MTKVDPSI 286
Query: 328 ------DLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 287 LSALSPNADENHDFFSGSGSSYVIGKAVATEDE 319
>gi|227358546|ref|ZP_03842871.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis
ATCC 29906]
gi|227161257|gb|EEI46331.1| ribonucleoside-diphosphate reductase beta chain [Proteus mirabilis
ATCC 29906]
Length = 337
Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 61/335 (18%), Positives = 121/335 (36%), Gaps = 31/335 (9%)
Query: 28 RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
R + ++ E + N W+P ++P+ +D+ W + LT E+ + R
Sbjct: 23 RVNAINWNRIEDEKDLEVWNRLTMNFWLPEKIPLSNDIPSWNT---LTQAEKQLTIRVFT 79
Query: 88 FFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--EL 145
+++ + P L F EAVH+ ++ I ++L L +
Sbjct: 80 GLTLLDTIQNTVGAPTLMPDAQTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDDA 139
Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
+ E + K++ L+Y Q V E FY+GF
Sbjct: 140 YRWSEENTYLQKKSDIILRYYQDSDPLKKKI---------------ASVFLESFLFYSGF 184
Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
+ K+ A+ + I+RDE++H + + L ++ + + ++L
Sbjct: 185 YLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQNQLLNKSSLEKQDIKDFAFSLL 244
Query: 266 HEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMS 324
+ E+ Y + VG ++++ + AN+ +G E LF N P +
Sbjct: 245 LDLYDNEVKYTEDLY--DSVGWT-EDVKKFLHYNANKALMNLGYEALFPDEITNVSPAIL 301
Query: 325 EVI--DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ D + +FF + Y G + WD
Sbjct: 302 SSLSPDANENHDFFSGSGSSYVIGKTINTEDDDWD 336
>gi|68535550|ref|YP_250255.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
jeikeium K411]
gi|68263149|emb|CAI36637.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
jeikeium K411]
Length = 331
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/339 (17%), Positives = 117/339 (34%), Gaps = 48/339 (14%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P +VP+ +D+ W + L D E+ R
Sbjct: 22 NWNSIPDEKDLEVWD---RLTANFWLPEKVPLSNDVPSWST---LNDMEKQATMRVFTGL 75
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ + + + P +F E+VH+ ++ I +L + F
Sbjct: 76 TMLDTIQGTVGAVKLIEDAATPHEEAVFTNISFMESVHAKSYSSIFMTLASTPEINDAFR 135
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA L + + + V+ E FY+GF
Sbjct: 136 WSEENEKLQNKAKIILDFYEGDD---------------PMKKKIASVLLESFLFYSGFYL 180
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDES+H + + +E ++ + +L E
Sbjct: 181 PMYWSSHAKLTNTADIIRLIIRDESVHGYYIGYKYQRALENETPERQEELKEHTFDLLLE 240
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---------- 317
E Y + +G ++++++ AN+ + +G E LF E
Sbjct: 241 LYDNEAQYTEDLY--DELGWT-EDVKRFLRYNANKALNNLGYEGLFPADETRVSPAILSA 297
Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQG---AELKWD 352
NP + +FF + Y G + D
Sbjct: 298 LNP--------GGDENHDFFSGSGSSYVIGKAENTVDDD 328
>gi|254702722|ref|ZP_05164550.1| ribonucleotide-diphosphate reductase subunit beta [Brucella suis
bv. 3 str. 686]
Length = 335
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 56/327 (17%), Positives = 113/327 (34%), Gaps = 28/327 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W++ L E+ + R
Sbjct: 26 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 82
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + + P L +F EAVH+ ++ I ++L L + +
Sbjct: 83 DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 142
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + K+ L V E FY+GF +
Sbjct: 143 ENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYLPMY 187
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 188 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLELYD 247
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 248 NEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSP 304
Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 305 NADENHDFFSGSGSSYVIGKAVATEDE 331
>gi|227329868|ref|ZP_03833892.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 320
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/330 (17%), Positives = 119/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W + L ER + R
Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWGT---LNARERQLTIRVFTGLTLL 67
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ + P L +F EAVH+ ++ I ++L L + +
Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ K++ L + ++ V E FY+GF +
Sbjct: 128 ENTALQKKSDIILSHYRSDDPLMKKV---------------ASVFLESFLFYSGFYLPMY 172
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + ++ + + +L +
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLAKADPARQQQVKNFAYDLLQDLYD 232
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+ Y E VG ++++ + AN+ +G E LF NP +
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289
Query: 328 DLKKEKNFFETRVTEYQQGAELK-----WD 352
+ + +FF + Y G + WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319
>gi|293411957|ref|ZP_06654682.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
gi|309797907|ref|ZP_07692288.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 145-7]
gi|220980068|emb|CAP72260.1| Ribonucleoside-diphosphate reductase subunit beta [Escherichia coli
LF82]
gi|291469512|gb|EFF12001.1| ribonucleoside-diphosphate reductase [Escherichia coli B354]
gi|308118515|gb|EFO55777.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 145-7]
gi|323934216|gb|EGB30640.1| ribonucleotide reductase [Escherichia coli E1520]
Length = 380
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 68/339 (20%), Positives = 130/339 (38%), Gaps = 28/339 (8%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ + M +S +V + KY + + W P EV + D + + L D
Sbjct: 12 DATKEPMFLGQSVNVARYDQQKYRDFEKLIERQLSFFWRPEEVDISSDRIDFNT--KLRD 69
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
ER + NL + +S+ + + +S PE ++ +F E +HS ++ +II
Sbjct: 70 HERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPELETWVETWSFSETIHSRSYTHIIR 129
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV- 195
+ D +F+ I +A L + + ++EF + Y
Sbjct: 130 GMVDDPSIVFDGIVTDEEIINRAISISAEYDRLYGMTCERQSL-GEKEFERLYVNEYGWE 188
Query: 196 -----------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
E + FY FA + G + G + ++I RDE+LH
Sbjct: 189 PYPLHRQLFRTLVSINALEAIRFYVSFACTFAFGERKLLEGNTKIMRFIARDEALHCEGT 248
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEAT----LLEIAYAHETMPKG-FVGLNAPSCE 293
+I ++ L KE ++++ E+ +A G +GLNA +
Sbjct: 249 ERMIRFMRTGREGLLWKEIAADEENVIYDTMKSVAEQEMNWADYLFKDGSMIGLNADILK 308
Query: 294 QYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
Y+++ N +++GL+ LF T +P WM++ +
Sbjct: 309 TYVKYRTNLAMNRLGLKALFPEVTTDPLVWMNKWLLTDT 347
>gi|50122260|ref|YP_051427.1| ribonucleotide-diphosphate reductase subunit beta [Pectobacterium
atrosepticum SCRI1043]
gi|49612786|emb|CAG76236.1| ribonucleoside-diphosphate reductase 2 beta chain [Pectobacterium
atrosepticum SCRI1043]
Length = 320
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 59/330 (17%), Positives = 120/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W + L ER + R
Sbjct: 11 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWST---LNTRERQLTIRVFTGLTLL 67
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ + P L +F EAVH+ ++ I ++L L + +
Sbjct: 68 DTIQNTLGAPTLMPDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTSEVDDAYRWSE 127
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P++ K++ L + ++ V E FY+GF +
Sbjct: 128 ENPALQKKSDIILSHYRSDDPLMKKV---------------ASVFLESFLFYSGFYLPMY 172
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + ++ + + +L +
Sbjct: 173 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALAKADPARQQQVKNFAYDLLQDLYD 232
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+ Y E VG ++++ + AN+ +G E LF NP +
Sbjct: 233 NEVLYTQELYDG--VGWT-EDVKKFLHYNANKALMNLGYEALFPASMTDVNPAILSALSP 289
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 290 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 319
>gi|239833484|ref|ZP_04681812.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum
intermedium LMG 3301]
gi|239821547|gb|EEQ93116.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum
intermedium LMG 3301]
Length = 328
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 56/327 (17%), Positives = 114/327 (34%), Gaps = 28/327 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W++ L +E+ + R
Sbjct: 19 NWNRIEDEKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKREEKQLTIRVFTGLTLL 75
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + + P L +F EAVH+ ++ I ++L L + +
Sbjct: 76 DTIQNAVGAVKLMDDAVTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 135
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + K+ L V E FY+GF +
Sbjct: 136 ENEFLQRKSVLILDQYHAGDPLKKKI---------------ASVFLESFLFYSGFYLPMY 180
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 181 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLERLNGEQKQEIKDFAFELLLELYD 240
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 241 NEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPADACKVNPAILSALSP 297
Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 298 NADENHDFFSGSGSSYVIGKAVATEDE 324
>gi|260448266|gb|ACX38688.1| Ribonucleoside-diphosphate reductase [Escherichia coli DH1]
gi|315137289|dbj|BAJ44448.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
DH1]
Length = 319
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKIFLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|260579705|ref|ZP_05847564.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
[Corynebacterium jeikeium ATCC 43734]
gi|258602135|gb|EEW15453.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
[Corynebacterium jeikeium ATCC 43734]
Length = 331
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/339 (17%), Positives = 117/339 (34%), Gaps = 48/339 (14%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P +VP+ +D+ W + L D E+ R
Sbjct: 22 NWNSIPDEKDLEVWD---RLTANFWLPEKVPLSNDVPSWST---LNDMEKQATMRVFTGL 75
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ + + + P +F E+VH+ ++ I +L + F
Sbjct: 76 TMLDTIQGTVGAVKLIEDAATPHEEAVFTNISFMESVHAKSYSSIFMTLASTPEINDAFR 135
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA L + + + V+ E FY+GF
Sbjct: 136 WSEENEKLQNKAKIILDFYEGDD---------------PMKKKIASVLLESFLFYSGFYL 180
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDES+H + + +E ++ + +L E
Sbjct: 181 PMYWSSHAKLTNTADIIRLIIRDESVHGYYIGYKYQRALENETPERQEELKEHTFDLLLE 240
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---------- 317
E Y + +G ++++++ AN+ + +G E LF E
Sbjct: 241 LYDNEAQYTEDLY--DELGWT-EDVKRFLRYNANKALNNLGYEGLFPADETRVSPAILSA 297
Query: 318 -NPFPWMSEVIDLKKEKNFFETRVTEYQQG---AELKWD 352
NP + +FF + Y G + D
Sbjct: 298 LNP--------GGDENHDFFSGSGSSYVIGKAENTVDDD 328
>gi|306812443|ref|ZP_07446641.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
NC101]
gi|222034376|emb|CAP77117.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli LF82]
gi|305854481|gb|EFM54919.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
NC101]
gi|312947211|gb|ADR28038.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
O83:H1 str. NRG 857C]
Length = 319
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + + + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|331684294|ref|ZP_08384886.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli H299]
gi|331077909|gb|EGI49115.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli H299]
Length = 319
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 118/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIHLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|312965591|ref|ZP_07779821.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli 2362-75]
gi|312289740|gb|EFR17630.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli 2362-75]
Length = 319
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISQAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + + Y G ++
Sbjct: 286 LSPNADENHDFFSSSGSSYVMGKAVE 311
>gi|300780546|ref|ZP_07090401.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
genitalium ATCC 33030]
gi|300533532|gb|EFK54592.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
genitalium ATCC 33030]
Length = 333
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 58/330 (17%), Positives = 121/330 (36%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P ++P+ +D+ W + L D E+L R
Sbjct: 24 NWNSIPDDKDQEVWD---RLTGNFWLPEKIPVSNDIPSWNT---LNDAEQLSTMRVFANL 77
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ--YIITSLGLDEGELFN 147
+++ +++ AF E+VH+ ++ Y+ + + F
Sbjct: 78 TLLDTIQGTVGAVSLIPDAKTLHEEAVYTNIAFMESVHAKSYSNIYMTLASTPQINDAFR 137
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Y + V+ E FY+GF
Sbjct: 138 WTEENAEVQRKAKIIQSYYCGDD---------------PLKRKIASVMLESFLFYSGFYL 182
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L+ +K+ A+ + I+RDE++H + + E ++ + +L++
Sbjct: 183 PLNWSVHSKLTNTADIIRLIIRDEAVHGYYIGYKYQVGLRDESQQRQDELKEHAFDLLYD 242
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
EI Y + +G ++++++ AN+ + +G E LF E +P S
Sbjct: 243 LYDNEIQYTEDLY--DPLGWT-EDVKRFLRYNANKALNNLGYEGLFPVDETRVSPAILAS 299
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + + D
Sbjct: 300 LAPNADENHDFFSGSGSSYVIGKAEDTQDD 329
>gi|295097265|emb|CBK86355.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 319
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 58/331 (17%), Positives = 121/331 (36%), Gaps = 33/331 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ P + +F EAVH+ ++ + ++L +
Sbjct: 67 DTIQNTVGAPALMSDALTPHEEAVMSNISFMEAVHARSYSSVFSTLCQTRDVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E S+ KA+ L+Y + V E FY+GF +
Sbjct: 127 ESASLQRKADLVLEYYRADEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L +
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKVSAEKREELKGFALDLLMDLYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
E++Y E G+ + ++ + AN+ +G E LF NP +
Sbjct: 232 NELSYTEELYAGTGWE----EDVKAFLCYNANKALMNLGYEALFPPEMAEVNPAILAALS 287
Query: 327 IDLKKEKNFFETRVTEYQQGAELK-----WD 352
+ + +FF + Y G ++ WD
Sbjct: 288 PNADENHDFFSGSGSSYVMGKAVETQDEDWD 318
>gi|20809684|gb|AAH28932.1| Similar to ribonucleotide reductase protein r2 class I [Homo
sapiens]
Length = 172
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 9/163 (5%)
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
+ V + EG++F FA I L + M G+ + I RDE LH +F + +
Sbjct: 6 ERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLV- 64
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
K +++ R ++ A +E + E +P +G+N +QY++F+A+R ++
Sbjct: 65 ------HKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLEL 118
Query: 308 GLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
G +F+ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 119 GFSKVFRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 159
>gi|157311531|ref|YP_001469574.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
Phi1]
gi|149380735|gb|ABR24740.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
Phi1]
Length = 386
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/353 (17%), Positives = 124/353 (35%), Gaps = 40/353 (11%)
Query: 17 VNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
V++ ++ M + ++ E + W P E+ + D +
Sbjct: 9 VDIMNEPMFLGSGLGIARYDIQ--RHQVFEELIEKQLSFFWRPEEISLATDRIQY---LN 63
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
+ D E+ NL + +S+ A +S+P +L F E +HS ++ +
Sbjct: 64 MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTH 123
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ + +D F+ + P+I +A QY + D + ++
Sbjct: 124 IMRNCFIDPASEFDQIIDNPAIMKRAESIGQYYDDVLYWIRKYENAKEDLRYWEERDDHT 183
Query: 194 VV---------------------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
+ E + FY FA S + G A+ ++
Sbjct: 184 ALDDARRFFEDTKRDLMASIYLCAHCVNALEAIRFYVSFACTFSFAERGLLEGNAKIMKF 243
Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPK 282
I RDE LHL +I Q + +E + ++ + + E +
Sbjct: 244 IARDEQLHLKGTQYIIRQWQTGADGDEWKQIAEELEGEATKIFLDVVEQEKEWVDHLFAM 303
Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
G L+ + Y++++A+ R GL+ F +P PWM + ++ + +N
Sbjct: 304 GAIPNLSPEILKTYVEYLADSRMRAAGLKSPFSVRRHPLPWMRKWLNSDEVQN 356
>gi|110642801|ref|YP_670531.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
536]
gi|191171432|ref|ZP_03032981.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli F11]
gi|300990601|ref|ZP_07179251.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 200-1]
gi|110344393|gb|ABG70630.1| ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
536]
gi|190908366|gb|EDV67956.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli F11]
gi|300305718|gb|EFJ60238.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 200-1]
gi|324014406|gb|EGB83625.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 60-1]
Length = 319
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------TSVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQEQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + + + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|170684037|ref|YP_001744827.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
SMS-3-5]
gi|170521755|gb|ACB19933.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli SMS-3-5]
Length = 319
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKKLEKISLAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + + + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|310641424|ref|YP_003946182.1| ribonucleoside-diphosphate reductase beta chain [Paenibacillus
polymyxa SC2]
gi|309246374|gb|ADO55941.1| Ribonucleoside-diphosphate reductase beta chain [Paenibacillus
polymyxa SC2]
Length = 321
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 66/309 (21%), Positives = 120/309 (38%), Gaps = 21/309 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+P+ DD W + L+D E+ + LG +++ + I
Sbjct: 20 FWNQNIMQFWTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQI 76
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWA 162
H+ + + L A E +H+ ++ I T+L E +F E P + KA
Sbjct: 77 MEHVDGLQRKAVLSFMAMMEQIHAKSYSSIFTTLASTEEIDGVFRWVEENPHLQTKAETI 136
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
QY + +P V+ E FY+GF L L K+ E
Sbjct: 137 RQYYMNIHTPKDL-----------YLAMAASVLLESYLFYSGFFYPLYLAGQGKLTCSGE 185
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H + + +I E ++ Q +L E Y +
Sbjct: 186 IIDLILRDESIHGVYVGVLAQEIYAELDEEEQRDLYQTLVGLLRYLHNNEEQYTEQIY-- 243
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL + ++++ AN+ +G +PLF+ E NP + + + K+ +FF +
Sbjct: 244 APIGL-VDDVKVFLRYNANKAMMNLGFDPLFEEEEVNPIVF-NGISTHTKQHDFFSKKGN 301
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 302 GYVRAMNVE 310
>gi|5230837|gb|AAD41037.1|AF112536_1 ribonucleotide reductase beta-chain [Corynebacterium glutamicum]
Length = 334
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/332 (17%), Positives = 126/332 (37%), Gaps = 35/332 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P +VP+ +D+ W + L + E+ R
Sbjct: 25 NWNSIPDSKDLEVWD---RLTGNFWLPEKVPVSNDIKSWGT---LNEVEKAATMRVFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ + L AF E+VH+ ++ I +L + F
Sbjct: 79 TLLDTIQGTVGAISLLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLASTAEINDAFR 138
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y + + V+ E FY+GF
Sbjct: 139 WSEENENLQRKAKIILSYYEGDD---------------PLKRKIASVILESFLFYSGFYL 183
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ +K+ A+ + I+RDE++H + + + +E ++ + +L++
Sbjct: 184 PMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTFDLLYD 243
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-----NPFPW 322
E Y+ + +G ++++++IAN+ + +G E LF E N
Sbjct: 244 LYDNETQYSEDLYDD--LGWT-EDVKRFLRYIANKALNNLGYEGLFPADETKVSPNILSA 300
Query: 323 MSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+S + + +FF + Y + + D
Sbjct: 301 LSP--NADENHDFFSGSGSSYVIGKAENTEDD 330
>gi|68161126|gb|AAY86994.1| ribonucleotide reductase M2b [Ictalurus punctatus]
Length = 192
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 64/214 (29%), Positives = 105/214 (49%), Gaps = 25/214 (11%)
Query: 132 QYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
+I + D E LFN +P + KA+WALQ+ D + F +
Sbjct: 1 SLLINTYIRDLKERDYLFNAIETLPYVKRKADWALQWI------------SDTNSTFAER 48
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L F V EG++F FA I L + M G+ + I RDE LH NF + +Q++
Sbjct: 49 LVAFAAV-EGIFFSGSFAAIFWLKKRGLMPGLTYSNELISRDEGLHCNFACLIYSQLQK- 106
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
K + + ++ +A +E + E +P +G+N+ +QY++F+A+R +G
Sbjct: 107 ------KPSADRVKDIITKAVRIEQEFLTEALPVDLIGINSYLMKQYIEFVADRLLTDLG 160
Query: 309 LEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
+ +++ ENPF +M E I L+ + NFFE RV E
Sbjct: 161 IPKVYE-AENPFDFM-EFISLEGKTNFFEKRVAE 192
>gi|86359305|ref|YP_471197.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium etli
CFN 42]
gi|86283407|gb|ABC92470.1| ribonucleoside-diphosphate reductase, beta subunit protein
[Rhizobium etli CFN 42]
Length = 324
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 15 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + + P L +F EAVH+ ++ I ++L + +
Sbjct: 69 TLLDTIQNGVGAVGLMEDAVTPHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + K+ ++ + + V E FY+GF
Sbjct: 129 WSEENEFLQRKSALIMEQYASGDALKKKV---------------ASVFLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLETLSEERRQEIKYFAFDLLLE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y VGL+ ++++ + AN+ +G E LF NP +
Sbjct: 234 LYDNEAKYTEALYDG--VGLS-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323
>gi|307625752|gb|ADN70056.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
UM146]
Length = 319
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + + +E + + +L E
Sbjct: 169 PMYFASRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNQEKISQAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + + + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKVLMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|268590425|ref|ZP_06124646.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
rettgeri DSM 1131]
gi|291314339|gb|EFE54792.1| ribonucleoside-diphosphate reductase, beta subunit [Providencia
rettgeri DSM 1131]
Length = 323
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/333 (18%), Positives = 121/333 (36%), Gaps = 40/333 (12%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 14 NWNRIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWNT---LTAAEKQLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYR 150
+++ + P L +F EAVH+ ++ I ++L D + +
Sbjct: 71 DTIQNTVGAPCLMPDAQTPHEEAVLSNISFMEAVHARSYSSIFSTLCSTVDVDDAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ KA L Y + + E FY+GF +
Sbjct: 131 ENNALQNKAKIILSYY---------------CDSHPLKKKIASIFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + KE + S ++L +
Sbjct: 176 WSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLAQYDENTQKEIKDFSFSLLFDLYE 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI--- 327
E+ Y E VG + ++++ + AN+ +G E LF T +++V
Sbjct: 236 NEVKYTQELY--DTVGWS-EDVKKFLHYNANKALMNLGYEALFPDT------VTDVSAAI 286
Query: 328 ------DLKKEKNFFETRVTEYQ--QGAELKWD 352
D + +FF + Y + + D
Sbjct: 287 LSALSPDANENHDFFSGSGSSYIIGKAVSTEDD 319
>gi|153010278|ref|YP_001371492.1| ribonucleotide-diphosphate reductase subunit beta [Ochrobactrum
anthropi ATCC 49188]
gi|151562166|gb|ABS15663.1| Ribonucleoside-diphosphate reductase [Ochrobactrum anthropi ATCC
49188]
Length = 328
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 55/327 (16%), Positives = 115/327 (35%), Gaps = 28/327 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W++ L E+ + R
Sbjct: 19 NWNRIEDEKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 75
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + + + P L +F EAVH+ ++ I ++L L + +
Sbjct: 76 DTIQNAVGAVKLMDDAATPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 135
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + K+ L + + V E FY+GF +
Sbjct: 136 ENEFLQRKSVLILDQYRADD---------------PLKRKIASVFLESFLFYSGFYLPMY 180
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + + + +L E
Sbjct: 181 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRGLERLNEEQKQAIKDFAFELLLELYD 240
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 241 NEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSP 297
Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 298 NADENHDFFSGSGSSYVIGKAVATEDE 324
>gi|238896131|ref|YP_002920867.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
pneumoniae NTUH-K2044]
gi|238548449|dbj|BAH64800.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 333
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 119/333 (35%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 24 NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 77
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A+ P L +F EAVH+ ++ I ++L + F
Sbjct: 78 TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 137
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ KA L Y Q V E FY+GF
Sbjct: 138 WSESCDPLQRKAQLMLGYYQADEPLKKKI---------------ASVFLESFLFYSGFWL 182
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L +
Sbjct: 183 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 242
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+AY+ E G G ++ + AN+ +G E LF NP +
Sbjct: 243 LYDNELAYSRELY--GESGW-FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 299
Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
+ + +FF + Y G A+ WD
Sbjct: 300 LSPNADENHDFFSGSGSSYVIGKMEETADDDWD 332
>gi|152971534|ref|YP_001336643.1| ribonucleotide-diphosphate reductase subunit beta [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|150956383|gb|ABR78413.1| ribonucleotide-diphosphate reductase beta subunit [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
Length = 320
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 119/333 (35%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 11 NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A+ P L +F EAVH+ ++ I ++L + F
Sbjct: 65 TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ KA L Y Q V E FY+GF
Sbjct: 125 WSESCDPLQRKAQLMLDYYQADEPLKKKI---------------ASVFLESFLFYSGFWL 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L +
Sbjct: 170 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+AY+ E G G ++ + AN+ +G E LF NP +
Sbjct: 230 LYDNELAYSRELY--GESGW-FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286
Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
+ + +FF + Y G A+ WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKMEETADDDWD 319
>gi|228473186|ref|ZP_04057941.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
gingivalis ATCC 33624]
gi|228275336|gb|EEK14128.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
gingivalis ATCC 33624]
Length = 319
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 70/320 (21%), Positives = 116/320 (36%), Gaps = 23/320 (7%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y + W+ +EV D+ +KS L+ E+ +KR L A
Sbjct: 7 RENYKPFEYPEVMKFVDMMHQTFWVHSEVEFTADIQDFKS--NLSLVEKEAVKRALLGIA 64
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E +Y PE A E HS + ++ LG + F
Sbjct: 65 QVEV-AVKTFWGDLYDVFPKPEFNGLGATFAECEFRHSEAYSRLLEVLGYNNE--FEALL 121
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
EVP + +Y + ++ + F ++ E ++ FA ILS
Sbjct: 122 EVPIFKERNTILKEYL------------AKNRENAMERILFFTLIIENASLFSQFATILS 169
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
R M +A + DE +H N GI ++ I ENP TK ++++ + E
Sbjct: 170 FTRFKGYMKNVANIIAWTSVDEQVHANAGIYILKTIFDENPEFRTKA-KKEATEFIREYI 228
Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSE 325
LLE +G + + YM++ + Q+ L F T P W E
Sbjct: 229 LLEDKMLDWIFEEGELEFFSKKDLANYMRYRLDDALTQLDLGKPFGITAEEAKPMLWFEE 288
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
+ + + +FF R T Y +
Sbjct: 289 EVFVNELDDFFAKRPTAYTK 308
>gi|311741200|ref|ZP_07715024.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303370|gb|EFQ79449.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 329
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/330 (18%), Positives = 121/330 (36%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P +VP+ +DL WK+ LT+ E+ R
Sbjct: 20 NWNSIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ AF E+VH+ ++ I +L + F
Sbjct: 74 TLLDTIQGTVGAISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y + + E FY+GF
Sbjct: 134 WSEENENLQKKAKIILSYYKGDDPLKKKV---------------ASTLLESFLFYSGFYL 178
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + Q + E ++ + ++++
Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQAYKQLDEEHQAELKEYTFDLVYD 238
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
EI Y + +G ++++++ AN+ + +G E LF E +P S
Sbjct: 239 LYDNEIDYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDD 325
>gi|311278369|ref|YP_003940600.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
gi|308747564|gb|ADO47316.1| Ribonucleoside-diphosphate reductase [Enterobacter cloacae SCF1]
Length = 320
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 57/330 (17%), Positives = 118/330 (35%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P ++P+ +D+ W+S L+ E+ + R
Sbjct: 11 NWNRIEDEKDLEVWNRLTSNFWLPEKIPLSNDIPAWQS---LSHAEQQLTIRVFTGLTLL 67
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ ++ P L F EAVH+ ++ I ++L + +
Sbjct: 68 DTVQNTVGAPSLMPDALTPHEEAVLSNIGFMEAVHARSYSSIFSTLCQSKDVDAAYAWSE 127
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA L + + + V E FY+GF +
Sbjct: 128 ENAPLQQKARTVLGHYAA---------------DCPLKRKIASVFLESFLFYSGFWLPMY 172
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + P + + ++ +L
Sbjct: 173 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKIPPARREALRNEAVDLLMNLYE 232
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
E+AY + G ++++ + AN+ +G E LF NP +
Sbjct: 233 NELAYTEALYAQ--TGWT-EEVKRFLCYNANKALMNLGYEALFPAEMADVNPAILAALSP 289
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 290 NADENHDFFSGSGSSYVMGKTVGTHDEDWD 319
>gi|225628773|ref|ZP_03786807.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
str. Cudo]
gi|237817303|ref|ZP_04596295.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
str. 2308 A]
gi|225616619|gb|EEH13667.1| ribonucleotide-diphosphate reductase subunit beta [Brucella ceti
str. Cudo]
gi|237788116|gb|EEP62332.1| ribonucleotide-diphosphate reductase subunit beta [Brucella abortus
str. 2308 A]
Length = 335
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 56/327 (17%), Positives = 113/327 (34%), Gaps = 28/327 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W++ L E+ + R
Sbjct: 26 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 82
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + + P L +F EAVH+ ++ I ++L L + +
Sbjct: 83 DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 142
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + K+ L V E FY+GF +
Sbjct: 143 ENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYLPMY 187
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 188 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEEKRQEIKDFAFELLLELYD 247
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 248 NEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSP 304
Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 305 NADENHDFFSGSGSSYVIGKAVATEDE 331
>gi|296104353|ref|YP_003614499.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295058812|gb|ADF63550.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 319
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/331 (18%), Positives = 123/331 (37%), Gaps = 33/331 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNHIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ P + +F EAVH+ ++ I ++L + ++
Sbjct: 67 DTIQNTVGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E S+ KAN L Y Q V E FY+GF +
Sbjct: 127 ESESLQRKANLVLDYYQADEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + + +E + + +L +
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKVSDVRREELKGFALDLLMDLYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
E++Y E G+ + ++ + AN+ +G E LF NP +
Sbjct: 232 NELSYTEELYAGTGWE----EEVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287
Query: 327 IDLKKEKNFFETRVTEYQQGAELK-----WD 352
+ + +FF + Y G ++ WD
Sbjct: 288 PNADENHDFFSGSGSSYVMGKAVETEDEDWD 318
>gi|22125124|ref|NP_668547.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
KIM 10]
gi|45442235|ref|NP_993774.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
biovar Microtus str. 91001]
gi|51597273|ref|YP_071464.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
pseudotuberculosis IP 32953]
gi|108808370|ref|YP_652286.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
Antiqua]
gi|108811297|ref|YP_647064.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
Nepal516]
gi|145598906|ref|YP_001162982.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
Pestoides F]
gi|149365457|ref|ZP_01887492.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
CA88-4125]
gi|162420024|ref|YP_001607865.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
Angola]
gi|165925252|ref|ZP_02221084.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165939901|ref|ZP_02228439.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Orientalis str. IP275]
gi|166008124|ref|ZP_02229022.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166212554|ref|ZP_02238589.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167398943|ref|ZP_02304467.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167421281|ref|ZP_02313034.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167423716|ref|ZP_02315469.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167468720|ref|ZP_02333424.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
FV-1]
gi|170023362|ref|YP_001719867.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
pseudotuberculosis YPIII]
gi|186896377|ref|YP_001873489.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia
pseudotuberculosis PB1/+]
gi|218929725|ref|YP_002347600.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
CO92]
gi|229838202|ref|ZP_04458361.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229895452|ref|ZP_04510624.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Yersinia pestis Pestoides A]
gi|229898686|ref|ZP_04513831.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229901543|ref|ZP_04516665.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
Nepal516]
gi|270489729|ref|ZP_06206803.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
KIM D27]
gi|294504447|ref|YP_003568509.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
Z176003]
gi|21957983|gb|AAM84798.1|AE013726_1 ribonucleoside-diphosphate reductase 2, beta chain, frag [Yersinia
pestis KIM 10]
gi|45437099|gb|AAS62651.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
biovar Microtus str. 91001]
gi|51590555|emb|CAH22196.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia
pseudotuberculosis IP 32953]
gi|108774945|gb|ABG17464.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Yersinia pestis Nepal516]
gi|108780283|gb|ABG14341.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Yersinia pestis Antiqua]
gi|115348336|emb|CAL21269.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
CO92]
gi|145210602|gb|ABP40009.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Yersinia pestis Pestoides F]
gi|149291870|gb|EDM41944.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
CA88-4125]
gi|162352839|gb|ABX86787.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
Angola]
gi|165912120|gb|EDR30759.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Orientalis str. IP275]
gi|165922859|gb|EDR40010.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165992506|gb|EDR44807.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166206485|gb|EDR50965.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166960770|gb|EDR56791.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167051447|gb|EDR62855.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167057886|gb|EDR67632.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|169749896|gb|ACA67414.1| Ribonucleoside-diphosphate reductase [Yersinia pseudotuberculosis
YPIII]
gi|186699403|gb|ACC90032.1| ribonucleotide reductase [Yersinia pseudotuberculosis PB1/+]
gi|229681472|gb|EEO77566.1| ribonucleoside-diphosphate reductase 2 beta chain [Yersinia pestis
Nepal516]
gi|229688234|gb|EEO80305.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Yersinia pestis biovar Orientalis str. India
195]
gi|229694568|gb|EEO84615.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229701607|gb|EEO89634.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Yersinia pestis Pestoides A]
gi|262362562|gb|ACY59283.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
D106004]
gi|262366433|gb|ACY62990.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
D182038]
gi|270338233|gb|EFA49010.1| ribonucleoside-diphosphate reductase, beta subunit [Yersinia pestis
KIM D27]
gi|294354906|gb|ADE65247.1| ribonucleotide-diphosphate reductase beta subunit [Yersinia pestis
Z176003]
gi|320016142|gb|ADV99713.1| ribonucleotide-diphosphate reductase subunit beta [Yersinia pestis
biovar Medievalis str. Harbin 35]
Length = 323
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 57/330 (17%), Positives = 120/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 14 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LTPHEQQLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ + P +F EAVH+ ++ I ++L L + +
Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAIFSNISFMEAVHARSYSSIFSTLCLTSDVDDAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + KA+ Q+ V E FY+GF +
Sbjct: 131 DNGPLQKKADIISQHYHNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L +
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLGKIDSAHRQEIKNFAFDLLQDLYD 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y + VG ++++ + AN+ +G E LF ++ +P +
Sbjct: 236 NEVRYTEDLYDH--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVNTEDEDWD 322
>gi|269866693|ref|XP_002652360.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220062665|gb|EED41696.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 211
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 28/220 (12%)
Query: 130 TFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
+ +I +L D+ E LFN +PSI KA WA ++ + +S
Sbjct: 1 MYSKLIETLIRDKEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFD------------- 47
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
V + EG++F FA I L + M G+ + I RDE LH +F + I
Sbjct: 48 -TRCVAFACVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYIN 106
Query: 247 IENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQ 306
+ ++ EA +E + E++P +G+N QY++F+A+R
Sbjct: 107 NK---------CTVIEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFA 157
Query: 307 IGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
+G + ++ + NPF +M E I L+ + NFFE R YQ+G
Sbjct: 158 LGEKKIYNVS-NPFDFM-ENISLQGKTNFFERREANYQKG 195
>gi|296118681|ref|ZP_06837257.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
ammoniagenes DSM 20306]
gi|295968170|gb|EFG81419.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
ammoniagenes DSM 20306]
Length = 329
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 58/330 (17%), Positives = 121/330 (36%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P ++P+ +D+ WK +T E+ R
Sbjct: 20 NWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSWK---KMTPQEQQATMRVFTGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ +F E+VH+ ++ I +L E F
Sbjct: 74 TLLDTIQGTVGAISLVPDAETMHEEAVYTNISFMESVHAKSYSNIFMTLATTPQINEAFR 133
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA + Y + + E FY+GF
Sbjct: 134 WSEENENLQRKAKIIMSYYRGDDPLKKKV---------------ASTLLESFLFYSGFYL 178
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ L K+ A+ + I+RDES+H + Q + +E++ + ++++
Sbjct: 179 PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEEKQQEYKDYTFDLMYD 238
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E+ Y + +G ++++++ AN+ + +G E LF E +P S
Sbjct: 239 LYENELEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSS 295
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + E D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEETVDD 325
>gi|269865524|ref|XP_002651954.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063427|gb|EED42101.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 205
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 25/206 (12%)
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
+ LFN +PSI KA WA ++ + +S V + EG++
Sbjct: 9 RQTYLFNAIENIPSIRKKALWAQKWIASDTSFD--------------TRCVAFACVEGIF 54
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
F FA I L + M G+ + I RDE LH +F + I +
Sbjct: 55 FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLHKYINNK---------CTV 105
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
++ EA +E + E++P +G+N QY++F+A+R +G + ++ + NPF
Sbjct: 106 IEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPF 164
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
+M E I L+ + NFFE R YQ+G
Sbjct: 165 DFM-ENISLQGKTNFFERREANYQKG 189
>gi|18158911|pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
gi|18158912|pdb|1KGN|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
gi|18158913|pdb|1KGN|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
gi|18158914|pdb|1KGN|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
gi|18158915|pdb|1KGO|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
gi|18158916|pdb|1KGO|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
gi|18158917|pdb|1KGO|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
gi|18158918|pdb|1KGO|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
gi|18158919|pdb|1KGP|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
gi|18158920|pdb|1KGP|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
gi|18158921|pdb|1KGP|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
gi|18158922|pdb|1KGP|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
gi|48425146|pdb|1OQU|A Chain A, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
gi|48425147|pdb|1OQU|B Chain B, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
gi|48425148|pdb|1OQU|C Chain C, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
gi|48425149|pdb|1OQU|D Chain D, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
gi|193506844|pdb|3DHZ|A Chain A, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
gi|193506845|pdb|3DHZ|B Chain B, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
gi|3077614|emb|CAA70766.1| ribonucleotide reductase subunit R2F [Corynebacterium ammoniagenes]
Length = 329
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/330 (18%), Positives = 121/330 (36%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P ++P+ +D+ W N +T E+L R
Sbjct: 20 NWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ AF E+VH+ ++ I +L E F
Sbjct: 74 TLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFR 133
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA + Y + E FY+GF
Sbjct: 134 WSEENENLQRKAKIIMSYYNGDDPLKKKV---------------ASTLLESFLFYSGFYL 178
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ L K+ A+ + I+RDES+H + Q + +E++ + ++++
Sbjct: 179 PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYD 238
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
EI Y + +G ++++++ AN+ + +G E LF E +P S
Sbjct: 239 LYENEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSS 295
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDD 325
>gi|323978713|gb|EGB73795.1| ribonucleotide reductase [Escherichia coli TW10509]
Length = 319
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDNPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISMAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|238790129|ref|ZP_04633906.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
frederiksenii ATCC 33641]
gi|238721798|gb|EEQ13461.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia
frederiksenii ATCC 33641]
Length = 323
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 55/323 (17%), Positives = 118/323 (36%), Gaps = 26/323 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W + L +E+ + R
Sbjct: 14 NWNKIEDDKDLEVWNRLTANFWLPEKVPLSNDIPSWAT---LAPNEQQLTIRVFTGLTLL 70
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ + P +F EAVH+ ++ I ++L + + +
Sbjct: 71 DTIQNTLGAPALIKDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSE 130
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA+ LQ+ V E FY+GF +
Sbjct: 131 ENGPLQKKADIILQHYHNDDPLKKKI---------------ASVFLESFLFYSGFYLPMY 175
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L +
Sbjct: 176 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLERVDNNRRQEIKNFAFDLLQDLYD 235
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y + VG ++++ + AN+ +G E LF ++ +P +
Sbjct: 236 NEVRYTEDLYDD--VGWT-EDVKKFLHYNANKALMNLGYEALFPASQAAVSPAILAALSP 292
Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G +
Sbjct: 293 NADENHDFFSGSGSSYVIGKAVS 315
>gi|323188442|gb|EFZ73728.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli RN587/1]
Length = 319
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDEPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISLAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + + + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|25028975|ref|NP_739029.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
efficiens YS-314]
gi|259508040|ref|ZP_05750940.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
[Corynebacterium efficiens YS-314]
gi|23494262|dbj|BAC19229.1| ribonucleotide reductase beta chain [Corynebacterium efficiens
YS-314]
gi|259164381|gb|EEW48935.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
[Corynebacterium efficiens YS-314]
Length = 334
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 61/336 (18%), Positives = 123/336 (36%), Gaps = 40/336 (11%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P ++P+ +D+ W + LTD E+ R
Sbjct: 25 NWNSIPDDKDLEVWD---RLTGNFWLPEKIPVSNDIKSWGT---LTDKEKQATMRVFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ + L AF E+VH+ ++ I +L + F
Sbjct: 79 TLLDTIQGTVGAVSLLPDAESLHEEAVLTNIAFMESVHAKSYSNIFMTLASTPQINDAFR 138
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y + + V+ E FY+GF
Sbjct: 139 WSEENEALQRKAKIILAYYEGED---------------PLKRKIASVILESFLFYSGFYL 183
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E ++ + +L++
Sbjct: 184 PMYWSSHAKLTNTADVIRLIIRDEAVHGYYVGYKYQKALARESAQRQEELKEYAFDLLYD 243
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
E Y + +G ++++++ AN+ + +G E LF E +S I
Sbjct: 244 LYENETQYTEDLY--DELGWT-EDVKRFLRYNANKAMNNLGYEGLFPADETK---VSPAI 297
Query: 328 ------DLKKEKNFFETRVTEYQQGAE-----LKWD 352
+ + +FF + Y G WD
Sbjct: 298 LSALSPNADENHDFFSGSGSSYVIGKAEHTEDEDWD 333
>gi|253990649|ref|YP_003042005.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253782099|emb|CAQ85263.1| ribonucleoside-diphosphate reductase 2 beta chain [Photorhabdus
asymbiotica]
Length = 319
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/345 (19%), Positives = 124/345 (35%), Gaps = 52/345 (15%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N+L K W N W+P +VP+ +D+ W + LT +E+ + R
Sbjct: 7 CAINWNRLKDDKDLEVWN---RLTTNFWLPEKVPLSNDIPSWNT---LTAEEKKLTIRVF 60
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
+++ A+ P + +F EAVH+ ++ I ++L L +
Sbjct: 61 TGLTLLDTIQNTVGAPALMEDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTADVDD 120
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+ ++ KA L Y V V E FY+G
Sbjct: 121 AYYWSENNLALQNKAKIILNYY---------------CDSHPLKKKVASVFLESFLFYSG 165
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F + K+ A+ + I+RDE++H + Q + P+ KE + + ++
Sbjct: 166 FYLPMYWSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQQSLNKYPNSEKKEIKDFTFSL 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
L + EI Y + VG ++++ + AN+ +G E LF +S
Sbjct: 226 LFDLYENEIKYTEDLY--DIVGWT-EDVKKFLHYNANKALMNLGYEALF---------LS 273
Query: 325 EVID------------LKKEKNFFETRVTEYQQGAEL-----KWD 352
E+ D + +FF + Y G + WD
Sbjct: 274 EMTDVSPAILSALSPGANENHDFFSGSGSSYVIGKAVNTEDEDWD 318
>gi|67008229|emb|CAH18519.1| ribonucleoside-dihosphate reductase beta chain [Rhodobacteraceae
bacterium 198]
Length = 325
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/346 (19%), Positives = 127/346 (36%), Gaps = 35/346 (10%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
++ R + + N+L K W N W+P +VP+ +D+ W + LT D
Sbjct: 3 DMTQARAVPKAINWNRLQDDKDLEIWN---RLTVNFWLPEKVPLSNDIQSW---SQLTPD 56
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+ + R +++ + + P L AF EAVH+ ++ + ++
Sbjct: 57 EQTLTIRVFTGLTLLDTIQNAVGAPTLMQDAITPHEESVLSNIAFMEAVHARSYSSVFST 116
Query: 138 LGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
L E F E + AK+ L + +SP V V
Sbjct: 117 LCQTTEVDEAFRWSAENEHLQAKSRLILDEYNSTASP--------------LRKKVASVF 162
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
E FY+GF + ++ A+ + I+RDE++H + + K
Sbjct: 163 LESFLFYSGFYLPMHWSSRARLTNTADLIRLIIRDEAIHGYYIGYKFQRGLERVSEAERK 222
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
E + + +L + +E Y + +GL + ++ + AN+ +G E LF
Sbjct: 223 EIKDFAFALLFDLYDIEARYTEQLYDG--LGLT-EDVKNFLHYNANKALQNLGFEALFPD 279
Query: 316 TE---NPFPWMSEVI-DLKKEKNFFETRVTEYQ--QGAELK---WD 352
NP M+ + + +FF + Y + + WD
Sbjct: 280 ESCRVNP-AIMAALSPGSDENHDFFSGSGSSYVIGKAEATEDEDWD 324
>gi|294853320|ref|ZP_06793992.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026]
gi|294818975|gb|EFG35975.1| ribonucleoside-diphosphate reductase [Brucella sp. NVSL 07-0026]
Length = 329
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 56/327 (17%), Positives = 113/327 (34%), Gaps = 28/327 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W++ L E+ + R
Sbjct: 20 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTIRVFTGLTLL 76
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + + P L +F EAVH+ ++ I ++L L + +
Sbjct: 77 DTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTPDVDDAYRWSE 136
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + K+ L V E FY+GF +
Sbjct: 137 ENEFLQRKSTLILDQYHADDPLKKKI---------------ASVFLESFLFYSGFYLPMY 181
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 182 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLFEEKRQEIKDFAFELLLELYD 241
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E+ Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 242 NEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSALSP 298
Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 299 NADENHDFFSGSGSSYVIGKAVATEDE 325
>gi|146312797|ref|YP_001177871.1| ribonucleotide-diphosphate reductase subunit beta [Enterobacter sp.
638]
gi|145319673|gb|ABP61820.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Enterobacter sp. 638]
Length = 319
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 57/330 (17%), Positives = 119/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSHAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + A+ P + +F EAVH+ ++ I ++L + ++
Sbjct: 67 DTIQNSVGAPALMGDSLTPHEEAVMSNISFMEAVHARSYSSIFSTLCQTKDVDAAYSWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
S+ KA L+Y V E FY+GF +
Sbjct: 127 ASTSLQRKAQLVLEYYHADDPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L +
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKISEAKREELKGFALDLLMDLYD 231
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
E++Y E + ++ + AN+ +G E LF NP +
Sbjct: 232 NELSYTEELYAGTSW---ETDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288
Query: 328 DLKKEKNFFETRVTEYQQGAELK-----WD 352
+ + +FF + Y G ++ WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVETEDADWD 318
>gi|24113980|ref|NP_708490.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
flexneri 2a str. 301]
gi|30064043|ref|NP_838214.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
flexneri 2a str. 2457T]
gi|110806691|ref|YP_690211.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
flexneri 5 str. 8401]
gi|24053093|gb|AAN44197.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
flexneri 2a str. 301]
gi|30042299|gb|AAP18024.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
flexneri 2a str. 2457T]
gi|110616239|gb|ABF04906.1| ribonucleoside-diphosphate reductase 2, beta chain [Shigella
flexneri 5 str. 8401]
gi|281602052|gb|ADA75036.1| Ribonucleoside-diphosphate reductase 2, beta chain [Shigella
flexneri 2002017]
gi|313648326|gb|EFS12770.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
flexneri 2a str. 2457T]
gi|332753393|gb|EGJ83773.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
flexneri 4343-70]
gi|332753901|gb|EGJ84276.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
flexneri K-671]
gi|332755661|gb|EGJ86024.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
flexneri 2747-71]
gi|332765626|gb|EGJ95839.1| ribonucleoside-diphosphate reductase subunit beta nrdF2 [Shigella
flexneri 2930-71]
gi|332999413|gb|EGK18998.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
flexneri VA-6]
gi|333000691|gb|EGK20268.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
flexneri K-218]
gi|333015924|gb|EGK35260.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
flexneri K-304]
Length = 319
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 118/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + N+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNTNKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|332878859|ref|ZP_08446574.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
sp. oral taxon 329 str. F0087]
gi|332683210|gb|EGJ56092.1| ribonucleoside-diphosphate reductase, beta subunit [Capnocytophaga
sp. oral taxon 329 str. F0087]
Length = 319
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/317 (21%), Positives = 116/317 (36%), Gaps = 23/317 (7%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
P +Y E + + W+ +EV D+ +KS L+ E+ IKR L A E
Sbjct: 10 YKPFEYPEVMEFVNAMHKSFWVHSEVEFTADVQDFKS--NLSAVEQEAIKRALLGIAQVE 67
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP 153
V +Y PE A E HS + ++ LG + F EVP
Sbjct: 68 VSV-KTFWGDLYDLFPKPEFNGLGATFAECEFRHSEAYARLLEVLGYNNE--FENLLEVP 124
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ +Y + ++ + F ++ E ++ FA +LS R
Sbjct: 125 VFKERNTVLKEYL------------AKNRENAMERILFFTLIIENASLFSQFATVLSFAR 172
Query: 214 -ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLE 272
+ +A + DE LH N GI ++ +I E P + K + + + +LE
Sbjct: 173 FKGYLKNVANIIAWTSVDEQLHANAGIYILKKIFEERPEMKAKA-EADATDFIRNYIVLE 231
Query: 273 IAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMSEVID 328
+G + YM++ + Q+GL F + + P W E +
Sbjct: 232 DKMLDWIFEQGELDFFGKKDLANYMRYRLDDSLTQLGLTKPFNISADEAKPMMWFEEEVF 291
Query: 329 LKKEKNFFETRVTEYQQ 345
+ +FF R T Y +
Sbjct: 292 SNELDDFFAKRPTAYTK 308
>gi|260904342|ref|ZP_05912664.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacterium
linens BL2]
Length = 326
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 62/308 (20%), Positives = 122/308 (39%), Gaps = 28/308 (9%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+P +VP+ +D+ W + LT++E+ + R +++ +++ P
Sbjct: 36 NFWLPEKVPLSNDIPSWAT---LTEEEKTLTMRVFTGLTLLDTIQGTVGAISLIPDAVTP 92
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTL 169
+ AF E+VH+ ++ I ++L + E F RE + +KA+ L Y +
Sbjct: 93 HEEAVMTNIAFMESVHAKSYSSIFSTLCSTKEIDEAFRWSRENTYLQSKADIILSYYRGD 152
Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
V + E FY+GF + K+ A+ + I+R
Sbjct: 153 D---------------PLKRKVASTLLESFLFYSGFYLPMYWSAHAKLTNTADLIRLIIR 197
Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
DE++H + + +E + + ++ E E+AY H+ VGL A
Sbjct: 198 DEAVHGYYIGYKYQKGLESQSEERKQELKDYTMNLMFELYENEVAYTHDLY--DSVGL-A 254
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQ-- 344
C+ ++ + AN+ +G E +F NP + + + +FF + Y
Sbjct: 255 EDCKMFLHYNANKALMNLGYEAMFPKEVTEVNPAILAALSPNSDENHDFFSGSGSSYVIG 314
Query: 345 QGAELKWD 352
+ + D
Sbjct: 315 KAENTEDD 322
>gi|194015457|ref|ZP_03054073.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
pumilus ATCC 7061]
gi|194012861|gb|EDW22427.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
pumilus ATCC 7061]
Length = 329
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 69/308 (22%), Positives = 117/308 (37%), Gaps = 20/308 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK LT ER + L ++ N + AI
Sbjct: 26 FYDQNVKQFWLPEEISLNGDLLAWKD---LTPAERDTYMKVLAGLTLLDTEQGNTGMPAI 82
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANW 161
H+ + + L A E VH+ ++ I +L E +F +E + KA
Sbjct: 83 MAHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPSETITAVFEWVKENRYLQRKAKL 142
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ + K D L V V E FY+GF L +M+
Sbjct: 143 ITDLYRDI---------KAGDDISLYKAMVASVYLESFLFYSGFYYPLYFYGQGRMMQSG 193
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E I+RDE++H + + +I + + S +L E E+AY +
Sbjct: 194 EIINLIIRDEAIHGVYVGLLAQEIYNRQTDDVRADLHEWSLGLLTELYENEVAYTDDVY- 252
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETRV 340
G VGL A + ++++ AN+ +G + F NP ++ + K +FF +
Sbjct: 253 -GAVGL-AHDVKAFVRYNANKALMNLGFDAHFPDELVNPIV-INGLSTKTKAHDFFSMQG 309
Query: 341 TEYQQGAE 348
Y++
Sbjct: 310 NGYKKATV 317
>gi|18466786|ref|NP_569593.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
gi|16506102|emb|CAD09988.1| putative ribonucleoside-diphosphate reductase beta subunit
[Salmonella enterica subsp. enterica serovar Typhi str.
CT18]
Length = 380
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 67/338 (19%), Positives = 125/338 (36%), Gaps = 26/338 (7%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ + M +S +V + KY + + W P EV + D + + L +
Sbjct: 12 DATKEPMFLGQSVNVARYDQQKYRDFEKLIEKQLSFFWRPEEVDITTDRIDFNT--KLQE 69
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
ER + NL + +S+ + + +S PE ++ +F E +HS ++ +II
Sbjct: 70 HERHIFLSNLRYQTLLDSVQGRSPNATLLPLISIPELETWVETWSFSETIHSRSYTHIIR 129
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-----------------TGTK 179
+ D +F+ I ++A L + G
Sbjct: 130 GMVDDPSIVFDGIVTDEEIISRAVSISSEYDRLYEMTCARQHLGEDEFERLYISEFDGKP 189
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
Q L V E + FY FA + G + G + ++I RDE+LH
Sbjct: 190 YPLQRQLFRTLVSVNALEAIRFYVSFACTFAFGERKLLEGNTKIMRFIARDEALHCEGTE 249
Query: 240 DVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQ 294
+I ++ L K E + + + E+ +A G +GLNA +
Sbjct: 250 RMIRFMRTGREGLMWKMIAAEEESFIYQTMMDVAGQEMRWADYLFKDGSMIGLNADILKS 309
Query: 295 YMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDLKK 331
Y+++ N ++GL LF ++P WM++ +
Sbjct: 310 YVKYRTNLAMRRLGLRQLFPEIKDDPLVWMNKWLLSDT 347
>gi|255324325|ref|ZP_05365446.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
tuberculostearicum SK141]
gi|255298655|gb|EET77951.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
tuberculostearicum SK141]
Length = 329
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 61/330 (18%), Positives = 121/330 (36%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P +VP+ +DL WK+ LT+ E+ R
Sbjct: 20 NWNSIPDEKDLEVWD---RLTGNFWLPEKVPVSNDLPSWKT---LTEKEKETTMRVFTGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ AF E+VH+ ++ I +L + F
Sbjct: 74 TLLDTIQGTVGAISLLPDSQTLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 133
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y + + E FY+GF
Sbjct: 134 WSEENENLQKKAKIILSYYKGDDPLKKKV---------------ASTLLESFLFYSGFYL 178
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + Q + E ++ + +L++
Sbjct: 179 PMYFSSRAKLTNTADIIRLIIRDEAVHGYYIGYKFQQAYKQLDEEHQAELKEYTFDLLYD 238
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
EI Y + +G ++++++ AN+ + +G E LF E +P S
Sbjct: 239 LYDNEIDYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGFEGLFPADETRVSPAILSS 295
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDD 325
>gi|288933942|ref|YP_003438001.1| ribonucleoside-diphosphate reductase [Klebsiella variicola At-22]
gi|290510980|ref|ZP_06550349.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
1_1_55]
gi|288888671|gb|ADC56989.1| Ribonucleoside-diphosphate reductase [Klebsiella variicola At-22]
gi|289775973|gb|EFD83972.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
1_1_55]
Length = 320
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 119/333 (35%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 11 NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A+ P L +F EAVH+ ++ I ++L + F
Sbjct: 65 TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ KA L Y Q V E FY+GF
Sbjct: 125 WSESCEPLQRKAQLMLGYYQADEPLKKKI---------------ASVFLESFLFYSGFWL 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L +
Sbjct: 170 PMHFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+AY+ E G G ++ + AN+ +G E LF NP +
Sbjct: 230 LYDNELAYSRELY--GESGW-FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286
Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
+ + +FF + Y G A+ WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKTEETADDDWD 319
>gi|193890961|gb|ACF28634.1| ribonucleotide reductase [Amphidinium carterae]
Length = 213
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 58/221 (26%), Positives = 92/221 (41%), Gaps = 20/221 (9%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
++ WE Y + W E+ + D W+S LT E+ IK L FFA+S+ +V
Sbjct: 1 QHADLWEMYKKHEASFWTAEEIDLSKDNVDWES---LTSSEQHFIKHVLAFFAASDGIVL 57
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPS 154
N+ + PE R + Q E +HS T+ +I + E + N +P+
Sbjct: 58 ENLAGQFACEIQVPEARAFYGFQIAMENIHSETYSLLIEQYIKEPQEKADILNAIETMPA 117
Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
+ KA WA+Q+ Q + F + L F V EG+ F F I L +
Sbjct: 118 VAEKAKWAVQWMQR-------------ENSFTERLVAFAAV-EGILFSGSFCAIYWLKKR 163
Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
M G+ + I RDE LH +F + +++ P
Sbjct: 164 GLMPGLTFSNELISRDEGLHADFACLIYRKLQNHLPEDVVH 204
>gi|320194816|gb|EFW69445.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
WV_060327]
Length = 319
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 59/326 (18%), Positives = 119/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLLPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------TSVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 QMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQEQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + + + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---SDDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|295698298|ref|YP_003602953.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
Riesia pediculicola USDA]
gi|291156973|gb|ADD79418.1| ribonucleoside-diphosphate reductase, beta subunit [Candidatus
Riesia pediculicola USDA]
Length = 375
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/336 (19%), Positives = 123/336 (36%), Gaps = 25/336 (7%)
Query: 18 NVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ + M ++++ KY + W P E+ + D ++S L
Sbjct: 11 DPLKEPMFFGNHVNISRFDQQKYSIFETLTEKQLSFFWRPEEIDISKDRIDYQS---LKL 67
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ + RNL + +S+ + + A +S PE ++ +F E +HS ++ YII
Sbjct: 68 YEKKIFIRNLQYQILLDSIQSRSPNCAFLPIVSLPEVENWIETWSFSETIHSRSYTYIIR 127
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK-DADQEFLQDLFVFYV- 194
++ D +F+ I +A Y L T + + + +
Sbjct: 128 NIIDDPSLIFDKIVSNQEIIDRAKDISFYYDHLIQLIRLYQTFGEGIHKIHEKKVTVSLR 187
Query: 195 --------------VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
E + FY FA + M G A+ + I RDE+LH+
Sbjct: 188 ELKKSLYLCLISVNALESIRFYVSFACSFAFAEKELMEGNAKIIKLIARDEALHVTGTQH 247
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHE----ATLLEIAYAHETMPKG-FVGLNAPSCEQY 295
+IN ++ E ++ + + + E +A G +GLN ++Y
Sbjct: 248 MINIMQSSKEDKEMIEISKECLMICQKIFLNVSDQEKRWADYLFSNGNLIGLNKKILKEY 307
Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
+ +I R IGL+ NP PW++ +
Sbjct: 308 IDYITEVRMRAIGLKKDLIKKINPIPWINAWLSSDN 343
>gi|38639969|ref|NP_943924.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1]
gi|33414658|gb|AAQ17701.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage Aeh1]
Length = 376
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 63/316 (19%), Positives = 116/316 (36%), Gaps = 25/316 (7%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
+K+ + + W P EV + D + L++ E+ + +NL + + +S+
Sbjct: 31 VKHPAIDKLTEKQLSFFWRPEEVDLSKDAIDYNQ---LSEAEQHVFTQNLKYQSLLDSVQ 87
Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
L +S+ ++ +F E +HS ++ +I+ +L +D +F+ I
Sbjct: 88 GRAPNLVFLPIVSDVALETWITTWSFSETIHSRSYTHIMRNLYVDPSAVFDRILLDSKIM 147
Query: 157 AKANWALQYTQTLSS--------------PSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
A+A QY L P +E L E + FY
Sbjct: 148 ARATSVTQYYDNLIKELKTYDLLTQSVFSPELRVAQLTKVKEALYLAMHAVNALEAIRFY 207
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQ 258
FA S G M G A+ + I RDE LHL +I + E +
Sbjct: 208 VSFACTFSFGERGIMEGNAKIMRLIARDEQLHLKGTQYLIRAWQNAEDDSEMYEIAKRLE 267
Query: 259 QKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT- 316
K+ + E E +A + + GL+ S Y+ ++ R GL +
Sbjct: 268 HKAVQIFLEVAEQEKEWARDLLGNVTIPGLSLSSMLDYIDYLTVSRMRSAGLPAPEELNI 327
Query: 317 --ENPFPWMSEVIDLK 330
++P PW+ + ++
Sbjct: 328 GMKHPLPWIRKWLNSD 343
>gi|283786769|ref|YP_003366634.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter
rodentium ICC168]
gi|282950223|emb|CBG89859.1| ribonucleoside-diphosphate reductase 2 beta chain [Citrobacter
rodentium ICC168]
Length = 319
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 57/323 (17%), Positives = 115/323 (35%), Gaps = 26/323 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W+S L E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQS---LNAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L +
Sbjct: 67 DTIQNIAGAPSLMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTRDVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA L + + V E FY+GF +
Sbjct: 127 ENAPLQRKAQIILAHYASDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + P ++ + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGMEKLPDAAREDLKNFALDLLMELYD 231
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
E+ Y E +A + ++ + AN+ +G E LF NP +
Sbjct: 232 NEVRYTEELYADT---GHAEDVQAFLCYNANKAMMNLGYEALFPAEMAEVNPAILAALSP 288
Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVE 311
>gi|330013348|ref|ZP_08307619.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
MS 92-3]
gi|328533536|gb|EGF60259.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella sp.
MS 92-3]
Length = 320
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 119/333 (35%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 11 NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A+ P L +F EAVH+ ++ I ++L + F
Sbjct: 65 TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ KA L Y Q V E FY+GF
Sbjct: 125 WSESCDPLQCKAQLMLGYYQADEPLKKKI---------------ASVFLESFLFYSGFWL 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L +
Sbjct: 170 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+AY+ E G G ++ + AN+ +G E LF NP +
Sbjct: 230 LYDNELAYSRELY--GESGW-FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286
Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
+ + +FF + Y G A+ WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKMEETADDDWD 319
>gi|323966928|gb|EGB62356.1| ribonucleotide reductase [Escherichia coli M863]
gi|327251394|gb|EGE63080.1| ribonucleoside-diphosphate reductase 2 subunit beta [Escherichia
coli STEC_7v]
Length = 319
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 120/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDNPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISMAQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETTW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|26249071|ref|NP_755111.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
CFT073]
gi|227888210|ref|ZP_04006015.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
83972]
gi|300986153|ref|ZP_07177743.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 45-1]
gi|301050518|ref|ZP_07197394.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 185-1]
gi|26109478|gb|AAN81681.1|AE016765_83 Ribonucleoside-diphosphate reductase 2 beta chain [Escherichia coli
CFT073]
gi|227834850|gb|EEJ45316.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
83972]
gi|300297774|gb|EFJ54159.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 185-1]
gi|300407907|gb|EFJ91445.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 45-1]
gi|307554652|gb|ADN47427.1| ribonucleotide-diphosphate reductase beta subunit [Escherichia coli
ABU 83972]
gi|315290985|gb|EFU50350.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 153-1]
Length = 319
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 118/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAILSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNLEKISQARREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVTAFLCYNANKALMNLGYEPLFPAGMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|49473850|ref|YP_031892.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
quintana str. Toulouse]
gi|49239353|emb|CAF25686.1| Ribonucleotide reductase beta-chain [Bartonella quintana str.
Toulouse]
Length = 324
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 64/342 (18%), Positives = 121/342 (35%), Gaps = 31/342 (9%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ K + + N+L K W N W+P +VP+ +D+ W S LT++
Sbjct: 3 KITTKNPVVCAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTEE 56
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
ER + R +++ +++ L AF EAVH+ ++ I ++
Sbjct: 57 ERKLTVRVFTGLTLLDTIQNTVGAISLMADAITEHEEAVLTNIAFMEAVHARSYSSIFST 116
Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
L + + F E + KA L+ + +
Sbjct: 117 LCSTVEVDDAFRWSEENIHLQKKARLVLERYEASDPLKKKI---------------ASTL 161
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
E FY+GF + K+ A+ + I+RDE++H + + +
Sbjct: 162 LESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLNESKKQ 221
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
E + S +L + +E Y + +GL + ++ + AN+ +G EPLF
Sbjct: 222 EIKDFSFNLLFDLYNIECKYTEDLY--DALGLT-EDVKVFLHYNANKALMNLGFEPLFPP 278
Query: 316 T---ENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
NP + + +FF + Y + D
Sbjct: 279 EVCRVNPAILAALSPSSDENHDFFSGAGSSYVIGKAVATTDD 320
>gi|238695114|ref|YP_002922308.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE]
gi|220029250|gb|ACL78185.1| aerobic NDP reductase small subunit [Enterobacteria phage JSE]
Length = 388
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 60/353 (16%), Positives = 125/353 (35%), Gaps = 40/353 (11%)
Query: 17 VNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
V++ ++ M + ++ E + + W P E+ + D +
Sbjct: 11 VDIMNEPMFLGSGLGIARYDIQ--RHQVFEELIEKSLSFFWRPEEISLATDRIQY---LN 65
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
+ D E+ NL + +S+ A +S+P +L F E +HS ++ +
Sbjct: 66 MGDVEKRFFTENLKYQTLLDSIQGRAPSAAFGPIVSDPTLDTWLQTWTFSETIHSRSYTH 125
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I+ + +D F+ + P+I +A +Y + D + ++
Sbjct: 126 IMRNCFIDPASEFDQIIDNPAIMKRAESIGKYYDDVLYWIRKYENAKEDLRYWEERDDQT 185
Query: 194 VV---------------------------FEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
+ E + FY FA S + G A+ ++
Sbjct: 186 ALDDARRFFEDTKRDLMASIYLCAHCVNALEAIRFYVSFACTFSFAERGLLEGNAKIMKF 245
Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPK 282
I RDE LHL +I Q + +E + ++ + + E +
Sbjct: 246 IARDEQLHLKGTQYIIRQWQTGVDGDEWKQIAEELEGEATKIFLDVVEQEKEWVDHLFAM 305
Query: 283 G-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
G L+ + Y++++A+ R GL+ F +P PWM + ++ + +N
Sbjct: 306 GAIPNLSPEILKTYVEYLADSRMRAAGLKSPFSVRRHPLPWMRKWLNSDEVQN 358
>gi|308068541|ref|YP_003870146.1| ribonucleoside-diphosphate reductase beta subunit (ribonucleotide
reductase small subunit) [Paenibacillus polymyxa E681]
gi|305857820|gb|ADM69608.1| Ribonucleoside-diphosphate reductase beta subunit (Ribonucleotide
reductase small subunit) [Paenibacillus polymyxa E681]
Length = 321
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 67/309 (21%), Positives = 120/309 (38%), Gaps = 21/309 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+P+ DD W + L+D E+ + LG +++ + I
Sbjct: 20 FWNQNIMQFWTDDEIPLSDDKMSWVT---LSDIEKEAYMKVLGGLTLLDTIQGGVGMPQI 76
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWA 162
H+ + + L A E +H+ ++ I T+L E +F E P + KA
Sbjct: 77 MEHVDGLQRKAVLSFMAMMEQIHAKSYSSIFTTLASTEEIDGVFRWVEENPHLQTKAETI 136
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
QY + +P V+ E FY+GF L L KM E
Sbjct: 137 RQYYMNIHTPKDL-----------YLAMAASVLLESYLFYSGFFYPLYLAGQGKMTCSGE 185
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H + + +I E ++ Q +L E Y +
Sbjct: 186 IIDLILRDESIHGVYVGVLAQEIYAELAEEEQRDLYQTLVGLLRYLHNNEEQYTEQIY-- 243
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
+GL + ++++ AN+ +G +PLF+ E NP + + + K+ +FF +
Sbjct: 244 TPIGL-VDDVKVFLRYNANKAMMNLGFDPLFEEEEVNPIVF-NGISTHTKQHDFFSKKGN 301
Query: 342 EYQQGAELK 350
Y + ++
Sbjct: 302 GYVRAMNVE 310
>gi|293394770|ref|ZP_06639061.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
odorifera DSM 4582]
gi|291422721|gb|EFE95959.1| ribonucleotide-diphosphate reductase subunit beta [Serratia
odorifera DSM 4582]
Length = 319
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 55/323 (17%), Positives = 115/323 (35%), Gaps = 26/323 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 10 NWNRIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWAT---LTAKEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + P +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNTVGAPTLIDDAITPHEEAVYSNISFMEAVHARSYSSIFSTLCQTRDVDDAYRWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ KA+ L + ++ V E FY+GF +
Sbjct: 127 ENRALQKKADIILAHYRSDDPLLKKV---------------ASVFLESFLFYSGFYLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + ++ + + +L +
Sbjct: 172 WSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQKGLEQVSATRRQQVKSFAFDLLQDLYD 231
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
E+ Y E VG + ++ + AN+ +G E LF NP +
Sbjct: 232 NEVRYTEELYDD--VGWT-EDVKTFLHYNANKALMNLGYEALFPPSMAEVNPAILSALSP 288
Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G +
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVN 311
>gi|227542806|ref|ZP_03972855.1| ribonucleoside-diphosphate reductase [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227181432|gb|EEI62404.1| ribonucleoside-diphosphate reductase [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 335
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 56/336 (16%), Positives = 121/336 (36%), Gaps = 40/336 (11%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P ++P+ +D+ W + L + E++ R
Sbjct: 26 NWNEIEDEKDQEVWD---RLTGNFWLPEKIPVSNDIPSWNT---LNETEQIATMRVFTGL 79
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ AF E+VH+ ++ I +L + F
Sbjct: 80 TLLDTIQGTVGAVSLIPDAVTHHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 139
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ K L+ D D + + + E FY+GF
Sbjct: 140 WSEENVNLQRKGEIILR---------------DYDGKNPYKRKIASTLLESFLFYSGFYL 184
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + +++ E + + + +
Sbjct: 185 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQRMQDNLSQAEKDELKDYTYDLTLD 244
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
E Y + +G ++++++ AN+ + +G E L+ E +S I
Sbjct: 245 LYDNEEQYTEDMY--DELGWT-EDVKRFLRYNANKALNNLGYEALYPSDETR---VSPAI 298
Query: 328 ------DLKKEKNFFETRVTEYQQGAE-----LKWD 352
+ + +FF + Y GA WD
Sbjct: 299 LSALSPNADENHDFFSGSGSSYVIGAVENTEDADWD 334
>gi|206577235|ref|YP_002236984.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
pneumoniae 342]
gi|206566293|gb|ACI08069.1| ribonucleoside-diphosphate reductase, beta subunit [Klebsiella
pneumoniae 342]
Length = 320
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 62/322 (19%), Positives = 115/322 (35%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 11 NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGL 64
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A+ P L +F EAVH+ ++ I ++L + F
Sbjct: 65 TLLDTIQNTVGAPALMADSLTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ KA L Y Q V E FY+GF
Sbjct: 125 WSESCEPLQRKAQLMLGYYQADEPLKKKI---------------ASVFLESFLFYSGFWL 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L +
Sbjct: 170 PMHFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+AY+ E G G ++ + AN+ +G E LF NP +
Sbjct: 230 LYDNELAYSRELY--GESGW-FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286
Query: 325 EVIDLKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 287 LSPNADENHDFFSGSGSSYVIG 308
>gi|227488208|ref|ZP_03918524.1| ribonucleoside-diphosphate reductase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227091778|gb|EEI27090.1| ribonucleoside-diphosphate reductase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 335
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 56/336 (16%), Positives = 121/336 (36%), Gaps = 40/336 (11%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ N W+P ++P+ +D+ W + L + E++ R
Sbjct: 26 NWNEIEDEKDQEVWD---RLTGNFWLPEKIPVSNDIPSWNT---LNETEQIATMRVFTGL 79
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ AF E+VH+ ++ I +L + F
Sbjct: 80 TLLDTIQGTVGAVSLIPDAVTHHEEAVYTNIAFMESVHAKSYSNIFMTLASTPMINDAFR 139
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ K L+ D D + + + E FY+GF
Sbjct: 140 WSEENVNLQRKGEIILR---------------DYDGKNPYKRKIASTLLESFLFYSGFYL 184
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + +++ E + + + +
Sbjct: 185 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKYQRMQDNLSQAEKDELKDYTYDLTLD 244
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
E Y + +G ++++++ AN+ + +G E L+ E +S I
Sbjct: 245 LYDNEEQYTEDMY--DELGWT-EDVKRFLRYNANKALNNLGYEALYPSDETR---VSPAI 298
Query: 328 ------DLKKEKNFFETRVTEYQQGAE-----LKWD 352
+ + +FF + Y GA WD
Sbjct: 299 LSALSPNADENHDFFSGSGSSYVIGAVENTEDADWD 334
>gi|227548647|ref|ZP_03978696.1| ribonucleoside-diphosphate reductase [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079261|gb|EEI17224.1| ribonucleoside-diphosphate reductase [Corynebacterium
lipophiloflavum DSM 44291]
Length = 332
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 60/343 (17%), Positives = 127/343 (37%), Gaps = 33/343 (9%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
++ DK + + N + K W+ N W+P +VP+ +D+ W++ L D
Sbjct: 12 LHAHDKPV--KAINWNTIPDDKDLEVWD---RLTGNFWLPEKVPVSNDIPSWRT---LND 63
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
E+ R +++ +++ AF E+VH+ ++ I
Sbjct: 64 YEKTATMRVFTGLTLLDTIQGTVGAVSLLPDAKTMHEEAVYTNIAFMESVHAKSYSNIFM 123
Query: 137 SLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYV 194
+L + F E S+ KA L Y + +
Sbjct: 124 TLADTPAINDAFRWSEENESLQRKAKIILSYYEGDNPHKKKV---------------AST 168
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ E FY+GF + +K+ A+ + I+RDE++H + + + +
Sbjct: 169 LLESFLFYSGFYLPMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQRGQADLSQAER 228
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
E + + +L++ E Y + +G ++++++ AN+ + +G E LF
Sbjct: 229 DELKDYTFNLLYDLYENETQYTEDIY--DPLGWT-EDVKRFLRYNANKALNNLGYEGLFP 285
Query: 315 YTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
E +P S + + +FF + Y + + + D
Sbjct: 286 QDETKVSPAILASLSPNADENHDFFSGSGSSYVIGKAEDTQDD 328
>gi|19553723|ref|NP_601725.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
glutamicum ATCC 13032]
gi|62391364|ref|YP_226766.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
glutamicum ATCC 13032]
gi|15430572|dbj|BAB64405.1| ribonucleoside diphosphate reductase [Corynebacterium glutamicum]
gi|21325297|dbj|BAB99918.1| Ribonucleotide reductase beta subunit [Corynebacterium glutamicum
ATCC 13032]
gi|41326705|emb|CAF21187.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 BETA CHAIN [Corynebacterium
glutamicum ATCC 13032]
Length = 334
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 58/332 (17%), Positives = 125/332 (37%), Gaps = 35/332 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P +VP+ +D+ W + L + E+ R
Sbjct: 25 NWNSIPDSKDLEVWD---RLTGNFWLPEKVPVSNDIKSWGT---LNEVEKAATMRVFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ + L AF E+VH+ ++ I +L + F
Sbjct: 79 TLLDTIQGTVGAISLLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLASTAEINDAFR 138
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y + + V+ E FY+GF
Sbjct: 139 WSEENENLQRKAKIILSYYEGDD---------------PLKRKIASVILESFLFYSGFYL 183
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ +K+ A+ + I+RDE++H + + + +E ++ + +L++
Sbjct: 184 PMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTFDLLYD 243
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-----NPFPW 322
E Y+ + +G ++++++ AN+ + +G E LF E N
Sbjct: 244 LYDNETQYSEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETKVSPNILSA 300
Query: 323 MSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+S + + +FF + Y + + D
Sbjct: 301 LSP--NADENHDFFSGSGSSYVIGKAENTEDD 330
>gi|37525251|ref|NP_928595.1| ribonucleotide-diphosphate reductase subunit beta [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36784678|emb|CAE13578.1| ribonucleoside-diphosphate reductase 2 beta chain (ribonucleotide
reductase 2) (R2f protein) [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 319
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 64/329 (19%), Positives = 123/329 (37%), Gaps = 29/329 (8%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ K W N W+P ++P+ +D+ W + LT +E+ + R
Sbjct: 7 CAINWNRIEDDKDLEVWN---RLTTNFWLPEKIPLSNDITSWNT---LTTEEKKLTIRVF 60
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
+++ A+ P + +F EAVH+ ++ I ++L L +
Sbjct: 61 TGLTLLDTIQNTVGAPALMEDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDD 120
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+ + S+ KA L Y + V E FY+G
Sbjct: 121 AYRWSEKSFSLQNKAKIILNYY---------------SYHHPLKKKIASVFLESFLFYSG 165
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F + + A+ + I+RDE++H + Q ++ L KE ++ + ++
Sbjct: 166 FYLPMYWSSRGILTNTADLIRLIIRDEAIHGYYIGYKFQQSLKKHSTLEQKEIKEFTFSL 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWM 323
L E EI Y E VG ++++ + AN+ +G E LF N P +
Sbjct: 226 LLELYENEIKYTEELY--DIVGWT-EDIKKFLHYNANKALMNLGYETLFPPEITNVSPTI 282
Query: 324 SEVI--DLKKEKNFFETRVTEYQQGAELK 350
+ + + +FF + Y G +
Sbjct: 283 LSALSPNANENHDFFSGSGSSYVIGKAVN 311
>gi|319440834|ref|ZP_07989990.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
variabile DSM 44702]
Length = 316
Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 56/326 (17%), Positives = 116/326 (35%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
D N++ K W +N W+P ++P+ +D+ W++ L++ E+ R
Sbjct: 7 DWNRIEDDKDLEVWN---RLTSNFWLPEKIPLSNDVQSWRT---LSEVEQATTMRVFAGL 60
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + + R P F E+VH+ ++ I +L + F
Sbjct: 61 TYLDTIQSAIGAPVLARDAVTPHEEAVFANIHFMESVHARSYSSIFQTLATTPQINDAFR 120
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P++ K + + + + V+ E FY+GF
Sbjct: 121 WVEEDPNMIYKRDRVISFYEGDD---------------PLRRKAASVILETFLFYSGFYL 165
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L +K+ A+ + I+RDE +H + + + + +L +
Sbjct: 166 PLKWASHSKLTNTADIIRLIIRDEVVHGYYIGYKYQVGMAGWSSAEQQAIKDEVFDLLLD 225
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN---PFPWMS 324
E AY +G ++++++ AN+ + +G E +F E P S
Sbjct: 226 LYDNECAYTETLY--DELGWT-EDVKRFLRYNANKALNNLGYEGVFPQDECRVSPAILAS 282
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ +FF + Y G +
Sbjct: 283 LDPGANENHDFFSGSGSAYTIGTAEE 308
>gi|283835589|ref|ZP_06355330.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
youngae ATCC 29220]
gi|291068801|gb|EFE06910.1| ribonucleoside-diphosphate reductase, beta subunit [Citrobacter
youngae ATCC 29220]
Length = 319
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 59/327 (18%), Positives = 116/327 (35%), Gaps = 28/327 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNRIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ P L +F EAVH+ ++ I ++L +
Sbjct: 67 DTIQNIVGAPALMADSITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTTDVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA L + + + V E FY+GF +
Sbjct: 127 ENNPLQRKAQIILAHYASDNPLQKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLAHISESAREELKNFALDLLMELYD 231
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
E Y E G A + ++ + AN+ +G E LF NP +
Sbjct: 232 NEAQYTDELY--AETGW-ADDVKAFLCYNANKALMNLGYEALFPPEMAEVNPAILAALSP 288
Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
+ ++ +FF + Y + E + D
Sbjct: 289 NAEENHDFFSGSGSSYVMGKAVETEDD 315
>gi|300718018|ref|YP_003742821.1| ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
billingiae Eb661]
gi|299063854|emb|CAX60974.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
billingiae Eb661]
Length = 319
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 116/326 (35%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ NQ+ K W +N W+P +VP+ +D+ W S L DE+ + R
Sbjct: 10 NWNQIEDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWNS---LNADEQQLTIRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A+ P + +F EAVH+ ++ I ++L +
Sbjct: 64 TLLDTIQNTVGAPALMADAVTPHEEAVMSNVSFMEAVHARSYSSIFSTLCHTTDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ + KA L++ V E FY+GF
Sbjct: 124 WSEDNQPLQRKAEIILEHYHHDDPLKKKI---------------ASVFLESFLFYSGFYL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I++DE++H + + + E QQ + +L
Sbjct: 169 PMYWSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKESPARKDELQQFAVELLLA 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
E+AY VG + ++++ + AN+ +G E LF NP +
Sbjct: 229 LYENELAYTEALYDG--VGWS-EEVKKFLHYNANKALMNLGYEALFPAEMTDVNPAILSA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G +
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVD 311
>gi|3068719|gb|AAC14561.1| ribonucleoside diphosphate reductase small subunit [Corynebacterium
ammoniagenes]
Length = 329
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 60/330 (18%), Positives = 122/330 (36%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P ++P+ +D+ W N +T E+L R
Sbjct: 20 NWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ + AF E+VH+ ++ I +L E F
Sbjct: 74 TLLDTIQGTVGAISLLPDVETMHEEGVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFR 133
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA + Y + E FY+GF
Sbjct: 134 WSEENENLQRKAKIIMSYYNGDDPLKKKV---------------ASTLLESFLFYSGFYL 178
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ L K+ A+ + I+RDES+H + Q + +E++ + ++++
Sbjct: 179 PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYD 238
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
EI Y + +G ++++++ AN+ + +G E LF E +P S
Sbjct: 239 LYENEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSS 295
Query: 325 EVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + D
Sbjct: 296 LSPNADENHDFFSGSGSSYVIGKAEDTTDD 325
>gi|226312721|ref|YP_002772615.1| ribonucleotide-diphosphate reductase subunit beta [Brevibacillus
brevis NBRC 100599]
gi|226095669|dbj|BAH44111.1| ribonucleoside-diphosphate reductase beta chain [Brevibacillus
brevis NBRC 100599]
Length = 316
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 70/308 (22%), Positives = 116/308 (37%), Gaps = 29/308 (9%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+P+ DD W L+ ER K+ LG +++ + I
Sbjct: 17 FWNQNIMQFWTDDEIPLSDDKMAWME---LSATERDTYKKVLGGLTLLDTVQGGVGMPKI 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWA 162
H+ + + L E +H+ ++ I T+L E +F+ P + KA
Sbjct: 74 MEHVDGLQRKAVLAFMGMMEQIHAKSYSSIFTTLASTEEIDGIFSWVENNPHLQKKAALI 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+ Q + P V V E FY+GF L L KM E
Sbjct: 134 SKRYQEIEKPKDL-----------YMAMVASVFLESYLFYSGFFYPLYLAGQGKMTSSGE 182
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H + + ++ + ++ +LHE E AY
Sbjct: 183 IIDLIVRDESIHGLYVGVLAQEVYQGLSVVEQTAAIEELYALLHELQENEEAYTTSLY-- 240
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL----KKEKNFFE 337
+GL A Y+++ AN+ +GL+PLF E NP V++ K+ +FF
Sbjct: 241 TEIGL-ADEVHAYVRYNANKALMNLGLDPLFPEEEVNPI-----VLNGIRTQTKQHDFFS 294
Query: 338 TRVTEYQQ 345
+ Y +
Sbjct: 295 KKGNGYVR 302
>gi|241206478|ref|YP_002977574.1| ribonucleotide-diphosphate reductase subunit beta [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240860368|gb|ACS58035.1| Ribonucleoside-diphosphate reductase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 324
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 59/333 (17%), Positives = 117/333 (35%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 15 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAT---LTAAEQQLTIRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + + + L +F EAVH+ ++ I ++L + +
Sbjct: 69 TLLDTIQNGVGSIRLMEDAATSHEEAVLSNVSFMEAVHARSYSSIFSTLCSTPDVDDAYR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + K+ ++ ++ V E FY+GF
Sbjct: 129 WSEENEFLQRKSALIMEQYRSGDPLKKKV---------------ASVFLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLGDERKQEIKDFAFELLLE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 234 LYDNEAKYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPAEACKVNPAILSA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 291 LSPNADENHDFFSGSGSSYVIGKAVATEDEDWD 323
>gi|145296522|ref|YP_001139343.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
glutamicum R]
gi|140846442|dbj|BAF55441.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 334
Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats.
Identities = 59/332 (17%), Positives = 125/332 (37%), Gaps = 35/332 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P +VP+ +D+ W + L D E+ R
Sbjct: 25 NWNSIPDSKDLEVWD---RLTGNFWLPEKVPVSNDIKSWGT---LNDVEKAATMRVFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ + L AF E+VH+ ++ I +L + F
Sbjct: 79 TLLDTIQGTVGAISLLPDADSLHEEAVLTNIAFMESVHAKSYSNIFMTLASTAEINDAFR 138
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y + + V+ E FY+GF
Sbjct: 139 WSEENENLQRKAKIILSYYEGDD---------------PLKRKIASVILESFLFYSGFYL 183
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ +K+ A+ + I+RDE++H + + + +E ++ + +L++
Sbjct: 184 PMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTFDLLYD 243
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-----NPFPW 322
E Y+ + +G ++++++ AN+ + +G E LF E N
Sbjct: 244 LYDNETQYSEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETKVSPNILSA 300
Query: 323 MSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
+S + + +FF + Y + + D
Sbjct: 301 LSP--NADENHDFFSGSGSSYVIGKAENTEDD 330
>gi|164688728|ref|ZP_02212756.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM
16795]
gi|164602204|gb|EDQ95669.1| hypothetical protein CLOBAR_02375 [Clostridium bartlettii DSM
16795]
Length = 327
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 68/306 (22%), Positives = 122/306 (39%), Gaps = 23/306 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+P E+ + D+ +W + L+ +ER + K+ LG ++ ANN + ++
Sbjct: 25 FWDQNVKQFWLPEEISVSKDVKVW---SELSPEERNLYKKVLGGLTLLDTKQANNGIPSM 81
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS--LGLDEGELFNMYREVPSITAKANWA 162
N + + L E +H+ ++ I T+ + E+F P++ KA
Sbjct: 82 MSLTDNLQRKAVLSFMGTMEEIHAKSYSSIFTTLLTVPEIDEIFEWIESEPTLQKKAEIV 141
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
L + D+ L V E FY+GF L L KM+ E
Sbjct: 142 LAQYEN-----------TDDRYGLYMSMATSVFLESFLFYSGFFYPLFLAGQGKMMASGE 190
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDESLH + + +I + KE++ K + EI Y +
Sbjct: 191 IISLILRDESLHGKYIGLLAQEIFKDFSKEEQKEYKSKVMDVFDRLMENEINYTNTIYEG 250
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340
GL A ++++ ANR +G + + NP + + + + +FF T+
Sbjct: 251 --TGL-ADEVINFLKYNANRAMENLGYDNRLEVDPVNPI--VLNGLSTETKTHDFFSTKG 305
Query: 341 TEYQQG 346
YQ+G
Sbjct: 306 NGYQKG 311
>gi|38234435|ref|NP_940202.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
diphtheriae NCTC 13129]
gi|38200698|emb|CAE50394.1| ribonucleotide reductase beta-chain 1 [Corynebacterium diphtheriae]
Length = 328
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 59/333 (17%), Positives = 119/333 (35%), Gaps = 37/333 (11%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P ++P+ +D+ W + L D E+ R
Sbjct: 19 NWNSIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIKSWNT---LNDLEKQTTMRVFTGL 72
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ + AF E+VH+ ++ I +L + F
Sbjct: 73 TLLDTIQGTVGAVSMLPDAVSLHEEAVYTNIAFMESVHAKSYSNIFMTLASTPEINDAFR 132
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA L Y + V + E FY+GF
Sbjct: 133 WSEENENLQKKAKIILSYYEGDD---------------PLKRKVASTLLESFLFYSGFYL 177
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + Q + E + + +L++
Sbjct: 178 PMYWSSHAKLTNTADIIRLIIRDEAVHGYYIGYKFQQALRKETPERQAELKGYTFDLLYD 237
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
EI Y + +G ++++++ AN+ + +G E LF E +S I
Sbjct: 238 LYDNEIQYTEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEALFPADECR---VSPAI 291
Query: 328 ------DLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + D
Sbjct: 292 LSALSPNADENHDFFSGSGSSYVIGKAENTTDD 324
>gi|258622932|ref|ZP_05717948.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
VM573]
gi|258624605|ref|ZP_05719543.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
VM603]
gi|262165762|ref|ZP_06033499.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
mimicus VM223]
gi|262171415|ref|ZP_06039093.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
mimicus MB-451]
gi|258583152|gb|EEW07963.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
VM603]
gi|258584871|gb|EEW09604.1| Ribonucleoside-diphosphate reductase subunit beta [Vibrio mimicus
VM573]
gi|261892491|gb|EEY38477.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
mimicus MB-451]
gi|262025478|gb|EEY44146.1| ribonucleotide reductase of class Ib (aerobic) beta subunit [Vibrio
mimicus VM223]
Length = 323
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 68/333 (20%), Positives = 121/333 (36%), Gaps = 33/333 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W N W+P +VP+ +DL+ W LT+ E+ + R
Sbjct: 13 NWNRLQDEKDLEIWN---RLTVNFWLPEKVPLSNDLSTW---GLLTEQEQTLTIRVFTGL 66
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + A+ L AF EAVH+ ++ + ++L + E F
Sbjct: 67 TLLDTIQNSVGAPALMVDAVTQHEEAVLTNIAFMEAVHARSYSSVFSTLCTTKQIDEAFR 126
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P + KA L Q P + V E FY+GF
Sbjct: 127 WSEENPHLQRKAQLILHEYQAGECPLKKK--------------IASVFLESFLFYSGFYL 172
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + + + ++L +
Sbjct: 173 PMHWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLAYRQLDEAQQAQIKDYAFSLLFD 232
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMS 324
E +Y VGL + ++ + AN+ +G EPLF NP +
Sbjct: 233 LYEAEASYTEFLY--DPVGLT-EEVKHFLHYNANKALMNLGFEPLFPEEVCEVNPAILAA 289
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 290 LSPNADENHDFFSGSGSSYVIGQAVATQDEDWD 322
>gi|319645694|ref|ZP_07999925.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
BT1B_CT2]
gi|317392241|gb|EFV73037.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
BT1B_CT2]
Length = 330
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 69/315 (21%), Positives = 121/315 (38%), Gaps = 24/315 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L D E+ + L ++ N + I
Sbjct: 24 FYEQNVKQFWLPEEISLNGDLLTWKH---LGDKEKDTYMKVLAGLTLLDTEQGNTGMPTI 80
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
H+ + + L A E VH+ ++ I +L E ELF + + KA
Sbjct: 81 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTEKITELFEWVKTNRYLQRKAAI 140
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ + D L V V E FY+GF L K++
Sbjct: 141 IGGLYNAIEA---------GDDISLYKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQCG 191
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E I+RDE++H + + +I + + + +++ E EIAY E
Sbjct: 192 EIINLIIRDEAIHGVYVGLLAQEIYNKKDEGTQHRLEMFALSLIEELYRNEIAYTEELYD 251
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
+ VGL ++++++ N+ +G P F+ E NP + ++ K + +FF +
Sbjct: 252 Q--VGLT-HDVKKFIRYNGNKALSNLGFNPYFEEEEINPI--VLNGLNTKTKSHDFFSMK 306
Query: 340 VTEYQQGAE--LKWD 352
Y++ LK D
Sbjct: 307 GNGYKKATVEPLKDD 321
>gi|262043918|ref|ZP_06017006.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259038772|gb|EEW39955.1| ribonucleoside-diphosphate reductase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 320
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 119/333 (35%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 11 NWNRIDDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTEL 64
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A+ P L +F EAVH+ ++ I ++L + F
Sbjct: 65 TLLDTIQNTVGAPALMADALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHSKEVDAAFA 124
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ KA L Y Q V E FY+GF
Sbjct: 125 WSESCDPLQRKAQLMLGYYQADEPLKKKI---------------ASVFLESFLFYSGFWL 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + +L +
Sbjct: 170 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEIVSPGKREELKNFALDLLMD 229
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+AY+ E G G ++ + AN+ +G E LF NP +
Sbjct: 230 LYDNELAYSRELY--GESGW-FDDVSAFLCYNANKALMNLGYEALFPAEMAAVNPAILAA 286
Query: 325 EVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
+ + +FF + Y G A+ WD
Sbjct: 287 LSPNADENHDFFSGSGSSYVIGKMEETADDDWD 319
>gi|260599071|ref|YP_003211642.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
turicensis z3032]
gi|260218248|emb|CBA33173.1| Ribonucleoside-diphosphate reductase 2 subunit beta [Cronobacter
turicensis z3032]
Length = 320
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 63/333 (18%), Positives = 116/333 (34%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 11 NWNKLQDEKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTPGEQQLTIRVFTGL 64
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A+ P L +F EAVH+ ++ I ++L +
Sbjct: 65 TLLDTIQNAVGAPALMADALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCQTPDVDAAYA 124
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA L + + V E FY+GF
Sbjct: 125 WSEENAPLQRKAQIILAHYRDDDPLKKKI---------------ASVFLESFLFYSGFYL 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + Q + + + + ++ E
Sbjct: 170 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQGLAQVDDARRESLKTFALDLMME 229
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
E+AY VG ++ + AN+ +G E LF NP +
Sbjct: 230 LYDNELAYTEALYRD--VGW-VDDVSAFLCYNANKALMNLGYEALFPPEMAQVNPSILAA 286
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK-----WD 352
+ +FF + Y G ++ WD
Sbjct: 287 LSPGADENHDFFSGSGSSYVMGKAVETEDADWD 319
>gi|157159438|ref|YP_001463986.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
E24377A]
gi|218555224|ref|YP_002388137.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
IAI1]
gi|300815921|ref|ZP_07096145.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 107-1]
gi|157081468|gb|ABV21176.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli E24377A]
gi|218361992|emb|CAQ99598.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
[Escherichia coli IAI1]
gi|300531850|gb|EFK52912.1| ribonucleoside-diphosphate reductase, beta subunit [Escherichia
coli MS 107-1]
Length = 319
Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 118/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + AN+ + EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLDYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|227833759|ref|YP_002835466.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
aurimucosum ATCC 700975]
gi|262184833|ref|ZP_06044254.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
aurimucosum ATCC 700975]
gi|227454775|gb|ACP33528.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
aurimucosum ATCC 700975]
Length = 328
Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats.
Identities = 59/324 (18%), Positives = 119/324 (36%), Gaps = 29/324 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ W+ +N W+P +VP+ +D+ WK + + E+ +
Sbjct: 19 NWNEITDQVDKDVWD---RLTSNFWLPEKVPVSNDIPTWK---IMDEAEQWATMQVFTGL 72
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ L+I + P AF E+VH+ ++ I +L FN
Sbjct: 73 TMLDTMQGTVGALSILPDAATPHEEAVYTNIAFMESVHAKSYSNIFMTLADTPTINHAFN 132
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
R+ + KA+ L + + +SP + E FY+GF
Sbjct: 133 WGRQSERLQYKAHRVLDFYKRGNSPMRK---------------AASTLLESFLFYSGFYL 177
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L + +K+ A+ + I+RDE++H + Q E Q K +L +
Sbjct: 178 PLRMAAHSKLTNTADIIRLIIRDEAVHGYYIGYKYQQQVKHLDQAQQAELQSKVIDLLLD 237
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325
E Y + +G ++++ AN+ + +G + ++ F M+
Sbjct: 238 LMDNEEHYTRDLY--DPLGWT-EDVLAFLRYNANKALNNLGYDGIYPQDMCRFNPGVMTS 294
Query: 326 V-IDLKKEKNFFETRVTEYQQGAE 348
+ + +FF + Y G
Sbjct: 295 LNPGADENHDFFSGSGSSYVIGTA 318
>gi|163867489|ref|YP_001608688.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
tribocorum CIP 105476]
gi|161017135|emb|CAK00693.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
tribocorum CIP 105476]
Length = 324
Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats.
Identities = 62/342 (18%), Positives = 122/342 (35%), Gaps = 31/342 (9%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ K + + + N+L K W N W+P +VP+ +D+ W + LT++
Sbjct: 3 KITTKNPIVSAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSW---SSLTEE 56
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
ER + R +++ +++ L AF EAVH+ ++ I ++
Sbjct: 57 ERKLTIRVFTGLTLLDTIQNTVGAISLLADAITEHEEAVLTNIAFMEAVHARSYSSIFST 116
Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
L + + F E + KA L+ + +
Sbjct: 117 LCSTVEVDDAFRWSEENSHLQKKARLVLERYEANDPLKKKI---------------ASTL 161
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
E FY+GF + K+ A+ + I+RDE++H + + +
Sbjct: 162 LESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGYAKLEEAKRQ 221
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
E + + +L + +E Y + +GL + ++ + AN+ +G E LF
Sbjct: 222 EVKDFAFNLLFDLYNIECKYTEDLY--DSLGLT-EDVKIFLHYNANKALMNLGFEALFPP 278
Query: 316 T---ENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
NP S + + +FF + Y + D
Sbjct: 279 EVCHVNPAILASLSPNSDENHDFFSGAGSSYVIGKAVATTDD 320
>gi|156843271|ref|XP_001644704.1| hypothetical protein Kpol_1056p47 [Vanderwaltozyma polyspora DSM
70294]
gi|156115352|gb|EDO16846.1| hypothetical protein Kpol_1056p47 [Vanderwaltozyma polyspora DSM
70294]
Length = 361
Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 50/308 (16%), Positives = 115/308 (37%), Gaps = 20/308 (6%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
E + + +L L+P+K+ ++ Y W E+ D+ W K
Sbjct: 32 EVEESQSKEPILMENKSRFVLMPIKFHTVYDGYKKREALFWPAEEIDFSHDIINWGKKA- 90
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
+D ++ +IK++L F S L + + I + PE + + + E +H +
Sbjct: 91 -SDHDKSIIKKSLAFLC-SSVLGSFYLPEHISSEVQIPEAKCFYGFEIMVENIHGEVYSL 148
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I L + E+ M+ K ++ + SF D + + V +
Sbjct: 149 AIDQLVHNTDEIKKMF--------KDVDNAKFIER--KKSFAERWFDKESSLFAEKLVAF 198
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
E ++ F I+SL + + + G+ + I++D +H +F + + +++K
Sbjct: 199 SSIEAIFSLVSFFSIMSLEKKDIIPGLISGIKLILKDHIVHCDFQMSIYSELKKRLDPGI 258
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+ ++ + E + K + ++++ +R G + F
Sbjct: 259 IERIVTEAVEIELE------TLEDDYFNKQLDKETKADIKNVIEYVGDRVLMGFGNQKHF 312
Query: 314 KYTENPFP 321
++ NP+
Sbjct: 313 -HSANPYD 319
>gi|294661479|ref|YP_003579932.1| NrdB ribonucleotide reductase B subunit [Klebsiella phage KP15]
gi|292660640|gb|ADE34888.1| NrdB ribonucleotide reductase B subunit [Klebsiella phage KP15]
Length = 402
Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 65/363 (17%), Positives = 124/363 (34%), Gaps = 37/363 (10%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ + N D+ M + V + K+ + W P EV +
Sbjct: 8 KGKDMLTVMNTNPDHNHLDQPMFFGEDTGVARYESQKHKVFESLTQKQLSFFWRPEEVDL 67
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
D + L + E+++ NL + +++ LA S+ ++ A
Sbjct: 68 STDRMQY---AKLPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSMETWIETWA 124
Query: 122 FEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT--- 178
F E +HS ++ +I +L +D F+ +I ++ +Y TL T
Sbjct: 125 FSETIHSRSYTHIQRNLHIDPSVQFDQILRNEAIMKRSASMTRYYDTLIDECHKLKTIMM 184
Query: 179 -------------------------KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+E L E + FY F+ +
Sbjct: 185 LQEQVSGYKPNDPAVVYYNEQYAKQATKCKEALYLCMHAVNALEAIRFYVSFSFTFNFAE 244
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEAT 269
KM G A+ + I RDE+LH I ++ E ++++ + E
Sbjct: 245 QGKMEGNAKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMVEISRRLKKEATAIFLEVY 304
Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVID 328
E +A G G++ S Y++ + ++R +GL+ F NP+PWM++ +
Sbjct: 305 EQEKEWAEHLFSVGDVEGVSLKSTIAYIEHLTDQRMRAVGLDSPFTPIPNPYPWMNKWLK 364
Query: 329 LKK 331
Sbjct: 365 SDN 367
>gi|291618545|ref|YP_003521287.1| NrdF [Pantoea ananatis LMG 20103]
gi|291153575|gb|ADD78159.1| NrdF [Pantoea ananatis LMG 20103]
gi|327394924|dbj|BAK12346.1| ribonucleoside-diphosphate reductase 2 beta subunit NrdF [Pantoea
ananatis AJ13355]
Length = 319
Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 58/323 (17%), Positives = 113/323 (34%), Gaps = 26/323 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +DL W++ L + + R
Sbjct: 10 NWNRIQDEKDLEVWNRLTSNFWLPEKVPLSNDLPAWQT---LDKQHQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + P L +F EAVH+ ++ I ++L +
Sbjct: 67 DTIQNVLGAPGLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCHTSDVDAAYQWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ KA L + + V E FY+GF +
Sbjct: 127 ENQALQNKAEIILTHYRADDPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + + QQ + +L
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKALEQVDEGRREALQQFAIDLLLALYE 231
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMSEVI 327
E+ Y G VG A + ++ + AN+ +G E LF NP +
Sbjct: 232 NEVVYTEALY--GDVGW-AEEVKTFLHYNANKALMNLGYEALFPAELTQVNPAILSALSP 288
Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVE 311
>gi|237729635|ref|ZP_04560116.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
30_2]
gi|226908241|gb|EEH94159.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter sp.
30_2]
Length = 319
Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats.
Identities = 59/328 (17%), Positives = 115/328 (35%), Gaps = 30/328 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L E+ + R
Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LNAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNVAGAPALMADSLTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA L + + V E FY+GF +
Sbjct: 127 ENTPLQRKAQIVLTHYASDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEHISESAREELKNFAFDLLMELYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
E Y E G+V + ++ + AN+ +G E LF NP +
Sbjct: 232 NEARYTEELYAETGWV----DDVKAFLCYNANKALMNLGYEALFPPEMAEVNPTILAALS 287
Query: 327 IDLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + E + D
Sbjct: 288 PNADENHDFFSGSGSSYVMGKAVETEDD 315
>gi|46143780|ref|ZP_00134247.2| COG0208: Ribonucleotide reductase, beta subunit [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 336
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 67/323 (20%), Positives = 124/323 (38%), Gaps = 27/323 (8%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D ++S
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYELFEKLIEKQLSFFWRPEEVDVSQDRIDYQS-- 65
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A +S PE ++ F E +HS ++
Sbjct: 66 -LPEHEKHIFISNLKYQTLLDSIQGRSPNVAFLPLVSIPELETWIETWTFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------FT 175
+II ++ D +F+ I +A Y L S +
Sbjct: 125 HIIRNIVNDPSIVFDDIVTNEEIIKRAKDISCYYDDLIRDSQLYTLYGEGCYTVDGKQYQ 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHL 235
++ ++ L V+ E + FY FA + M G A+ ++I RDE LHL
Sbjct: 185 VTLRNLKRQLYLCLMSVNVL-EAIRFYVSFACSFAFAERQLMEGNAKIIKFIARDEYLHL 243
Query: 236 NFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAP 290
+++N I +E +Q++ + A E +A G +GLN
Sbjct: 244 TGTQNMLNIIASGQDDPEMAEIAEECKQEAYDLFVAAAEQEKEWAAYLFKDGSMIGLNED 303
Query: 291 SCEQYMQFIANRRCHQIGLEPLF 313
+Y+++I N R +GL F
Sbjct: 304 ILVKYVEYITNIRMQAVGLPRPF 326
>gi|224584592|ref|YP_002638390.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|224469119|gb|ACN46949.1| ribonucleotide-diphosphate reductase beta subunit [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
Length = 319
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 58/324 (17%), Positives = 117/324 (36%), Gaps = 28/324 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P + KA L + + V E FY+GF +
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
EI Y G+V + ++ + AN+ +G E LF NP +
Sbjct: 232 NEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEIADVNPAILAALS 287
Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311
>gi|16761590|ref|NP_457207.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. CT18]
gi|29143070|ref|NP_806412.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
gi|213052490|ref|ZP_03345368.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213424576|ref|ZP_03357365.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E02-1180]
gi|213584527|ref|ZP_03366353.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
gi|213650063|ref|ZP_03380116.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. J185]
gi|289824437|ref|ZP_06544026.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|25330821|pir||AH0841 ribonucleoside-diphosphate reductase (EC 1.17.4.1) - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503891|emb|CAD05919.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
enterica subsp. enterica serovar Typhi]
gi|29138703|gb|AAO70272.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
enterica subsp. enterica serovar Typhi str. Ty2]
Length = 319
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 58/324 (17%), Positives = 117/324 (36%), Gaps = 28/324 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P + KA L + + V E FY+GF +
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKLFALDLLMELYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
EI Y G+V + ++ + AN+ +G E LF NP +
Sbjct: 232 NEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287
Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311
>gi|156932794|ref|YP_001436710.1| ribonucleotide-diphosphate reductase subunit beta [Cronobacter
sakazakii ATCC BAA-894]
gi|156531048|gb|ABU75874.1| hypothetical protein ESA_00590 [Cronobacter sakazakii ATCC BAA-894]
Length = 320
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/333 (19%), Positives = 116/333 (34%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 11 NWNKLQDEKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTPGEQQLTIRVFTGL 64
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A+ P L +F EAVH+ ++ I ++L +
Sbjct: 65 TLLDTIQNAVGAPALMADALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCQTPDVDAAYA 124
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA L + + V E FY+GF
Sbjct: 125 WSEENAPLQRKAQIILAHYRDDDPLKKKI---------------ASVFLESFLFYSGFYL 169
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + Q + + + S ++ E
Sbjct: 170 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQALAQVDDARRESLKTFSLDLMME 229
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
E+AY VG ++ + AN+ +G E LF NP +
Sbjct: 230 LYDNELAYTEALYRD--VGW-VDDVSAFLCYNANKALMNLGYEALFPPEMAQVNPSILAA 286
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK-----WD 352
+ +FF + Y G ++ WD
Sbjct: 287 LSPGADENHDFFSGSGSSYVMGKAVETEDEDWD 319
>gi|17567153|ref|NP_508269.1| hypothetical protein F19G12.2 [Caenorhabditis elegans]
gi|10864352|gb|AAG24065.1| Hypothetical protein F19G12.2 [Caenorhabditis elegans]
Length = 668
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 25/229 (10%)
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTT 176
E +HS + ++ + D+ E LFN I AKA+W L++
Sbjct: 444 IIAVENIHSEMYAKLLEAYIRDDAERNILFNAITTFKFIKAKADWCLRWI---------- 493
Query: 177 GTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLN 236
D + F + L F V EG++F + FA I L + + G+ + I LH N
Sbjct: 494 --SDHNAPFSERLAAFAAV-EGIFFSSSFAAIFWLKKRGLLPGLTHSNELISM-FLLHPN 549
Query: 237 FGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYM 296
N + P + + +++E+ L+E + E++P +G+N +Y+
Sbjct: 550 CFFSTFNLQRRRKPA------ESRITEIINESVLVEQDFVRESLPTNLIGMNQHMMCKYV 603
Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
+F+A+ ++G + T+NPF +M E I ++ + NFFE RV+EYQ+
Sbjct: 604 EFVADLLLEELGYSKRYN-TKNPFDFM-ENISIEGKTNFFEKRVSEYQR 650
>gi|488081|gb|AAA56996.1| ribonucleoside-diphosphate reductase small subunit [Drosophila
melanogaster]
Length = 214
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 54/235 (22%), Positives = 105/235 (44%), Gaps = 25/235 (10%)
Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157
V + + E R + Q E VHS + +I + D + LFN +P++
Sbjct: 2 VERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNAIETMPAVKR 61
Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
KA+WAL + + + + + EG++F FA I L + M
Sbjct: 62 KADWALSWISS-------------KSANFGERIIAFAAVEGIFFSGSFASIFWLKKRGLM 108
Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
G+ + I RDE LH +F + + + + +++ ++ +A +E +
Sbjct: 109 PGLTFSNELISRDEGLHCDFAVLMFQHLVQ-------RPKRERIIEIIRDAVAIEQEFLT 161
Query: 278 ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ +P +G+N QY++F+A+R ++G+ ++ T+NPF +M E+I L +
Sbjct: 162 DALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYN-TKNPFNFM-EMISLDGK 214
>gi|333001013|gb|EGK20583.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
flexneri K-272]
gi|333015483|gb|EGK34822.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
flexneri K-227]
Length = 319
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 118/326 (36%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMLDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y E + A + ++ + N+ +G EPLF NP +
Sbjct: 229 LYDNELQYTDELYAETPW---ADDVKAFLCYNTNKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 286 LSPNADENHDFFSGSGSSYVMGKAVE 311
>gi|307547024|ref|YP_003899503.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
elongata DSM 2581]
gi|307219048|emb|CBV44318.1| ribonucleotide-diphosphate reductase subunit beta [Halomonas
elongata DSM 2581]
Length = 324
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 58/325 (17%), Positives = 115/325 (35%), Gaps = 35/325 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W +N W+P ++P+ +D+ W + L D E+ + R
Sbjct: 15 NWNRLQDDKDLEVWN---RLTSNFWLPEKIPLSNDVPSWNT---LNDREQQLTIRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A+ P +F E+VH+ ++ I ++L + +
Sbjct: 69 TLLDTIQGTIGAPALIEDAVTPHEEAVFTNISFMESVHARSYSSIFSTLCATRDVDDAYR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA L+ +T V V E FY+GF
Sbjct: 129 WSEENTHLQNKAELILERYRTDD---------------PLMRKVASVFLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + ++ + + +L +
Sbjct: 174 PMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEKESAERQRQIKDTTYDLLLD 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
E+ Y VGL + ++ + AN+ +G E LF + I
Sbjct: 234 LYDNEVQYTESLY--DEVGLT-EDVKAFLHYNANKALMNLGYEALFPNATEA---VDPAI 287
Query: 328 ------DLKKEKNFFETRVTEYQQG 346
++ +FF + Y G
Sbjct: 288 LAALSPGAEENHDFFSGSGSSYVIG 312
>gi|157692410|ref|YP_001486872.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus pumilus
SAFR-032]
gi|194015081|ref|ZP_03053698.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
pumilus ATCC 7061]
gi|157681168|gb|ABV62312.1| ribonucleoside-diphosphate reductase beta subunit [Bacillus pumilus
SAFR-032]
gi|194014107|gb|EDW23672.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus
pumilus ATCC 7061]
Length = 326
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 66/315 (20%), Positives = 126/315 (40%), Gaps = 24/315 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L + ER + L ++ N + +
Sbjct: 21 FYNQNVKQFWLPEEISLNGDLLTWK---YLGEKERDTYMKVLAGLTLLDTEQGNTGMPIV 77
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
H+ + + L A E VH+ ++ I +L E E+F ++ + KA+
Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETISEVFEWVKKNKFLQKKADM 137
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ +++ + D L V V E FY+GF L K++
Sbjct: 138 IVSLYRSI---------QKDDPISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E I+RDE++H + + +I + KE S +L+E E+ Y +
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTPDVQKELYDFSIDLLNELYENELHYTEDIYD 248
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
+ + + ++++++ AN+ +G P F+ E NP + ++ K + +FF +
Sbjct: 249 QVNL---SHDVKKFIRYNANKALMNLGFAPYFEEEEINPI--VLNGLNTKTKSHDFFSMK 303
Query: 340 VTEYQQGAE--LKWD 352
Y++ LK D
Sbjct: 304 GNGYKKATVEPLKDD 318
>gi|121602770|ref|YP_988676.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
bacilliformis KC583]
gi|120614947|gb|ABM45548.1| ribonucleoside-diphosphate reductase, beta subunit [Bartonella
bacilliformis KC583]
Length = 324
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 62/325 (19%), Positives = 120/325 (36%), Gaps = 29/325 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W N W+P +VP+ +D+ W+S LT++E+ + R
Sbjct: 15 NWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWES---LTEEEKKLTIRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDEGELFN 147
+++ +++ L AF EAVH+ ++ I ++L +D + F
Sbjct: 69 TLLDTVQNTVGAVSLMADAVTEHEEAVLTNIAFMEAVHARSYSSIFSTLCLTVDVDDAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA L++ + E FY+GF
Sbjct: 129 WSEENVYLQKKAKLVLEHYEANDPLKKKI---------------ASTFLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + +E + + ML +
Sbjct: 174 PMYWSSRAKLTNTADLIRLIIRDEAIHGYYIGYKFQLGFAKLNEAQKQEMKDFTFNMLFD 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
+E Y + +GL + ++ + AN+ +G E LF NP +
Sbjct: 234 LYNIECKYTEDLY--DSLGLT-EDVKVFLHYNANKALMNLGFESLFPSEVCRVNPAILAA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
+ + +FF + Y G +
Sbjct: 291 LSPNSDENHDFFSGSGSSYVIGKAV 315
>gi|168262084|ref|ZP_02684057.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|205349275|gb|EDZ35906.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
Length = 319
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/324 (18%), Positives = 117/324 (36%), Gaps = 28/324 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P + KA L + + V E FY+GF +
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + KE + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIERKELKLFALDLLMELYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
EI Y G+V + ++ + AN+ +G E LF NP +
Sbjct: 232 NEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287
Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311
>gi|56964873|ref|YP_176604.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus clausii
KSM-K16]
gi|56911116|dbj|BAD65643.1| ribonucleoside-diphosphate reductase beta chain [Bacillus clausii
KSM-K16]
Length = 334
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 68/309 (22%), Positives = 124/309 (40%), Gaps = 22/309 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P EV + DL WK LT E+ + L ++ N + +
Sbjct: 21 FYNQNVKQFWLPEEVALNGDLLTWK---YLTPAEKDTYMKVLAGLTLLDTEQGNTGMPLV 77
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
H+ + + L A E VH+ ++ I +L E +LF + P + KAN
Sbjct: 78 AEHVQGHQRKAVLNFMAMMENAVHAKSYSNIFMTLATSEEINDLFEWVKVNPRLQKKANT 137
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ + + D L V V E FY+GF L K++
Sbjct: 138 IVSIYKDIKR---------GDDISLFKALVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E I+RDE++H + + +I + KE Q + +L E E+ Y +
Sbjct: 189 EIINLILRDEAIHGVYIGLLAQEIYNKQSPDTQKELHQFAIELLDELYKNELLYTEDLYD 248
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
+ VGL+ ++++++ AN+ +G +P F+ + NP + ++ K + +FF +
Sbjct: 249 Q--VGLS-HDVKKFIRYNANKALMNLGFDPYFEDEDINPI--VLNGLNTKTKSHDFFSMK 303
Query: 340 VTEYQQGAE 348
Y++
Sbjct: 304 GNGYKKATV 312
>gi|323145837|gb|ADX32078.1| hypothetical protein [Pseudomonas phage P3_CHA]
gi|323146023|gb|ADX32263.1| hypothetical protein [Pseudomonas phage PAK_P3]
Length = 344
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 65/317 (20%), Positives = 126/317 (39%), Gaps = 19/317 (5%)
Query: 36 PLKYGWAWEKYL-SACNNHWMPTEVPMQDDLALWKSKNGL------TDDERLMIKRNLGF 88
P Y WA E A + HW + + DD + S +GL ++ + ++ + L
Sbjct: 17 PFVYPWAVEAARVHAIDMHWDVHQADLTDDKQQYFSTSGLGTNQVPHENHKWLLDKTLSM 76
Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
F + V + ++ N E R +L+ A E VH + G +G+
Sbjct: 77 FTEMDRTVGE-GYTKLLPYIKNNEIRNWLITAASREVVHQRAYALAAEEFGFTDGD---- 131
Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
++ S + + S+ ++ + + EG+ + F +
Sbjct: 132 WKAFASYKEMRDKLEVMGENRIDASW------SEPLQAACILAQLLTGEGVGLFGAFTVL 185
Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
L++ R K++G + Q+ + DE+ H+ I V+ ++ + Q+ R ++ +
Sbjct: 186 LNMKRCGKLIGFNDINQWSLADETDHVEKNIRVLKAMRKDLTPEENSILDQEIRYLIEDY 245
Query: 269 TLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
E+ Y KG L +Y+ ++ R + L + ENP PWM +I
Sbjct: 246 REAEVKYLVLAFEKGPQHDLTFEQTVEYIDYLCRLRLFECELLKEHQVGENPLPWMEWMI 305
Query: 328 DLKKEKNFFETRVTEYQ 344
+ + NFFE +VT+Y
Sbjct: 306 NAARHDNFFEKKVTDYS 322
>gi|62181312|ref|YP_217729.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161615703|ref|YP_001589668.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Paratyphi B str. SPB7]
gi|167552693|ref|ZP_02346445.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|168822877|ref|ZP_02834877.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|197265553|ref|ZP_03165627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|205353758|ref|YP_002227559.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|207858077|ref|YP_002244728.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|62128945|gb|AAX66648.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161365067|gb|ABX68835.1| hypothetical protein SPAB_03488 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197243808|gb|EDY26428.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|205273539|emb|CAR38525.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
enterica subsp. enterica serovar Gallinarum str. 287/91]
gi|205322691|gb|EDZ10530.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205340791|gb|EDZ27555.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|206709880|emb|CAR34233.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|320087214|emb|CBY96980.1| ribonucleoside-diphosphate reductase beta chain [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|322715798|gb|EFZ07369.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Choleraesuis str. A50]
gi|326628866|gb|EGE35209.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Gallinarum str. 9]
Length = 319
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 58/324 (17%), Positives = 117/324 (36%), Gaps = 28/324 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P + KA L + + V E FY+GF +
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
EI Y G+V + ++ + AN+ +G E LF NP +
Sbjct: 232 NEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287
Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311
>gi|198241755|ref|YP_002216784.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|197936271|gb|ACH73604.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|326624542|gb|EGE30887.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Dublin str. 3246]
Length = 319
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 58/324 (17%), Positives = 117/324 (36%), Gaps = 28/324 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDVAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P + KA L + + V E FY+GF +
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
EI Y G+V + ++ + AN+ +G E LF NP +
Sbjct: 232 NEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287
Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311
>gi|49475007|ref|YP_033048.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
henselae str. Houston-1]
gi|49237812|emb|CAF27007.1| Ribonucleotide reductase beta-chain [Bartonella henselae str.
Houston-1]
Length = 324
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 63/342 (18%), Positives = 121/342 (35%), Gaps = 31/342 (9%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ K + + N+L K W N W+P +VP+ +D+ W S LT++
Sbjct: 3 KITTKNPVVCAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTEE 56
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
ER + R +++ +++ L AF EAVH+ ++ I ++
Sbjct: 57 ERKLTIRVFTGLTLLDTIQNTVGAISLMADAITEHEEAVLTNIAFMEAVHARSYSSIFST 116
Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
L + + F E + KA L+ + +
Sbjct: 117 LCSTVEVDDAFRWSEENIHLQKKARLVLERYEGNDPLKKKI---------------ASTL 161
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
E FY+GF + K+ A+ + I+RDE++H + + K
Sbjct: 162 LESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLDETKKK 221
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
E + + +L + +E Y + +GL + ++ + AN+ +G E LF
Sbjct: 222 EVKDFAFNLLFDLYNIECKYTEDLY--DALGLT-EDVKIFLHYNANKALMNLGFEALFPS 278
Query: 316 T---ENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
NP + + + +FF + Y + D
Sbjct: 279 EVCRVNPAILAALSPNSDENHDFFSGAGSSYVIGKAVATTDD 320
>gi|319406095|emb|CBI79725.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp. AR
15-3]
Length = 324
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/337 (18%), Positives = 122/337 (36%), Gaps = 29/337 (8%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ K + + N+L K W N W+P +VP+ +D+ W S LT++
Sbjct: 3 KITTKNPVVCAINWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTEE 56
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
ER + R +++ +++ L AF EAVH+ ++ I ++
Sbjct: 57 ERKLTIRVFTGLTLLDTVQNTVGAISLIADAVTEHEEAVLTNIAFMEAVHARSYSSIFST 116
Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
L + + F E + KA L++ + +
Sbjct: 117 LCSTVEVDDAFRWSEENTYLQKKARLILEHYEANEPLKKKI---------------ASTL 161
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
E FY+GF + K+ A+ + I+RDE++H + + +
Sbjct: 162 LESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLHEAKKQ 221
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
E + + +L + +E Y + +GL + ++ + AN+ +G E LF
Sbjct: 222 EIKDFAFNILFDLYNIECKYTEDLY--DAIGLT-EDVKVFLHYNANKALMNLGFEALFPP 278
Query: 316 T---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NP + + + +FF + Y G +
Sbjct: 279 EVCRVNPAILAALSPNSDENHDFFSGSGSSYVIGKAV 315
>gi|168238723|ref|ZP_02663781.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|194737146|ref|YP_002115764.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|194712648|gb|ACF91869.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197288484|gb|EDY27861.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 319
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/324 (17%), Positives = 118/324 (36%), Gaps = 28/324 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P++ KA L + + V E FY+GF +
Sbjct: 127 ENPTLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
EI Y G+V + ++ + AN+ +G E LF NP +
Sbjct: 232 NEIRYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287
Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311
>gi|327198239|ref|YP_004306815.1| putative ribonucleotide reductase B subunit [Pseudomonas phage
KPP10]
gi|297591765|dbj|BAJ09185.1| putative ribonucleotide reductase B subunit [Pseudomonas phage
KPP10]
Length = 339
Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/317 (20%), Positives = 126/317 (39%), Gaps = 19/317 (5%)
Query: 36 PLKYGWAWEKYL-SACNNHWMPTEVPMQDDLALWKSKNGL------TDDERLMIKRNLGF 88
P Y WA E A + HW + + DD + S +GL ++ + ++ + L
Sbjct: 12 PFVYPWAVEAARVHAIDMHWDVHQADLTDDKQQYFSTSGLGTNQVPHENHKWLLDKTLSM 71
Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
F + V + ++ N E R +L+ A E VH + G +G+
Sbjct: 72 FTEMDRTVGE-GYTKLLPYIKNNEIRNWLITAASREVVHQRAYALAAEEFGFTDGD---- 126
Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
++ S + + S+ ++ + + EG+ + F +
Sbjct: 127 WKAFASYKEMRDKLEVMGENRIDASW------SEPLQAACILAQLLTGEGVGLFGAFTVL 180
Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
L++ R K++G + Q+ + DE+ H+ I V+ ++ + Q+ R ++ +
Sbjct: 181 LNMKRCGKLIGFNDINQWSLADETDHVEKNIRVLKAMRKDLTPEENAILDQEIRYLIEDY 240
Query: 269 TLLEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
E+ Y KG L +Y+ ++ R + L + ENP PWM +I
Sbjct: 241 REAEVKYLVLAFEKGPQHDLTFEQTVEYIDYLCRLRLFECELLKEHQVGENPLPWMEWMI 300
Query: 328 DLKKEKNFFETRVTEYQ 344
+ + NFFE +VT+Y
Sbjct: 301 NAARHDNFFEKKVTDYS 317
>gi|297622357|ref|YP_003703791.1| ribonucleotide reductase [Truepera radiovictrix DSM 17093]
gi|297163537|gb|ADI13248.1| ribonucleotide reductase [Truepera radiovictrix DSM 17093]
Length = 324
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 69/329 (20%), Positives = 121/329 (36%), Gaps = 21/329 (6%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
ML R + L P +Y + +++W+ TE + +D+ ++ + ER ++
Sbjct: 1 MLTER--RSTLRPAEYPEFLAYRDAIRHSYWLHTEYNLTEDVNDYRVGVR--EAERQVLT 56
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
R L A E +YR PE A E H + +++ LGL +
Sbjct: 57 RALLAIAQVEV-AVKTFWGDLYRKFPKPEVGAVGYTFAESEVRHQDAYAHLLELLGLTD- 114
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
F E P++ + L P G DA + +F E + +
Sbjct: 115 -AFARLHEAPALGER----LAVLDAHLVPVRQDGRDDA-----FSVALFSAFVEHVSLFG 164
Query: 204 GFAQILSLGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
F + + +A + G+A + ++E +H FG ++ ++ E P + F + R
Sbjct: 165 QFLILKAFNQATGRFKGVANIVEATSKEEQIHGMFGYKLVETLRRERPEWFGAAFSARLR 224
Query: 263 TMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---N 318
+A E A G L E +MQ N +G PL++
Sbjct: 225 AACVDAERAERAILRWICEAGALPFLPLAQLEAFMQARFNGALVALGEAPLWEVDPALLA 284
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
P W E + K+ +FF R T Y +
Sbjct: 285 PTRWFEEELLSSKQVDFFHKRPTAYAKKT 313
>gi|168244605|ref|ZP_02669537.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168464072|ref|ZP_02697989.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|194442875|ref|YP_002042053.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194450827|ref|YP_002046771.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194401538|gb|ACF61760.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194409131|gb|ACF69350.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|195633109|gb|EDX51523.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|205336532|gb|EDZ23296.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
Length = 319
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/324 (17%), Positives = 117/324 (36%), Gaps = 28/324 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P + KA L + + V E FY+GF +
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALNLLMELYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
EI Y G+V + ++ + AN+ +G E LF NP +
Sbjct: 232 NEIRYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287
Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311
>gi|16766119|ref|NP_461734.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|167992529|ref|ZP_02573627.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168233769|ref|ZP_02658827.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|194469894|ref|ZP_03075878.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|197251114|ref|YP_002147708.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|204929699|ref|ZP_03220773.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|238909579|ref|ZP_04653416.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Tennessee str.
CDC07-0191]
gi|585861|sp|P17424|RIR4_SALTY RecName: Full=Ribonucleoside-diphosphate reductase 2 subunit beta;
AltName: Full=R2F protein; AltName: Full=Ribonucleotide
reductase 2
gi|4389108|pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
gi|4389109|pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
gi|4389155|pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
gi|4389156|pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
gi|109157246|pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
gi|109157247|pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
gi|311979|emb|CAA51695.1| ribonucleoside-diphosphate reductase [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16421357|gb|AAL21693.1| ribonucleoside-diphosphate reductase 2, beta subunit [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|194456258|gb|EDX45097.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|197214817|gb|ACH52214.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|204321418|gb|EDZ06618.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205329263|gb|EDZ16027.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205332191|gb|EDZ18955.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|261247949|emb|CBG25782.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
enterica subsp. enterica serovar Typhimurium str.
D23580]
gi|267994924|gb|ACY89809.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhimurium str.
14028S]
gi|301159373|emb|CBW18891.1| ribonucleoside-diphosphate reductase 2 beta chain [Salmonella
enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|312913831|dbj|BAJ37805.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhimurium str.
T000240]
gi|321223605|gb|EFX48670.1| Ribonucleotide reductase of class Ib aerobic, beta subunit
[Salmonella enterica subsp. enterica serovar Typhimurium
str. TN061786]
gi|323131164|gb|ADX18594.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhimurium str. 4/74]
gi|332989685|gb|AEF08668.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
Length = 319
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/324 (17%), Positives = 117/324 (36%), Gaps = 28/324 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P + KA L + + V E FY+GF +
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
EI Y G+V + ++ + AN+ +G E LF NP +
Sbjct: 232 NEIRYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287
Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311
>gi|322614368|gb|EFY11299.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322621567|gb|EFY18420.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322624428|gb|EFY21261.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322626626|gb|EFY23431.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322633514|gb|EFY30256.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322638443|gb|EFY35141.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322639746|gb|EFY36430.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322643792|gb|EFY40342.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322649478|gb|EFY45912.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322655932|gb|EFY52232.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322661327|gb|EFY57552.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322662525|gb|EFY58733.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322666899|gb|EFY63074.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322671269|gb|EFY67392.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322677724|gb|EFY73787.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322681449|gb|EFY77479.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322683848|gb|EFY79858.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|323193763|gb|EFZ78966.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323197449|gb|EFZ82586.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323203264|gb|EFZ88293.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323205210|gb|EFZ90185.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323212777|gb|EFZ97588.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323218081|gb|EGA02793.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323221656|gb|EGA06069.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323225124|gb|EGA09375.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323230844|gb|EGA14962.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323234805|gb|EGA18891.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323238844|gb|EGA22894.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323241544|gb|EGA25575.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323248309|gb|EGA32245.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323252925|gb|EGA36759.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323256953|gb|EGA40662.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323260572|gb|EGA44183.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323264370|gb|EGA47876.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323269504|gb|EGA52957.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
Length = 319
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 56/323 (17%), Positives = 115/323 (35%), Gaps = 26/323 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P + KA L + + V E FY+GF +
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
EI Y + + ++ + AN+ +G E LF NP +
Sbjct: 232 NEICYTEALYAETDW---VNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288
Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKTVE 311
>gi|161502142|ref|YP_001569254.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. arizonae serovar 62:z4,z23:-- str.
RSK2980]
gi|160863489|gb|ABX20112.1| hypothetical protein SARI_00165 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 319
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 54/323 (16%), Positives = 113/323 (34%), Gaps = 26/323 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LNAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQSKDVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P + KA + + + V E FY+GF +
Sbjct: 127 ENPQLQRKAQIMMTHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKQSAIEREELKLFALDLLMELYD 231
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVI 327
E Y + + ++ + AN+ +G E LF NP +
Sbjct: 232 NETRYTEALYAETDW---VDDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSP 288
Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVE 311
>gi|240849861|ref|YP_002971249.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
grahamii as4aup]
gi|240266984|gb|ACS50572.1| ribonucleotide-diphosphate reductase subunit beta [Bartonella
grahamii as4aup]
Length = 324
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 63/342 (18%), Positives = 121/342 (35%), Gaps = 31/342 (9%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ K + + N+L K W N W+P +VP+ +D+ W + LTD+
Sbjct: 3 KITTKNPVVCAVNWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSW---SSLTDE 56
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
ER + R +++ +++ L AF EAVH+ ++ I ++
Sbjct: 57 ERKLTIRVFTGLTLLDTIQNTVGAISLLADAITEHEEAVLTNIAFMEAVHARSYSSIFST 116
Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
L + + F E + KA L+ + +
Sbjct: 117 LCSTVEVDDAFRWSEENIHLQKKARLVLERYEANDPLKKKI---------------ASTL 161
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
E FY+GF + K+ A+ + I+RDE++H + + K
Sbjct: 162 LESFLFYSGFYLPMYWASRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLDEAKKK 221
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
E + + +L + +E Y + +GL + ++ + AN+ +G E LF
Sbjct: 222 EIKDFAFNLLFDLYNIECKYTEDLY--DALGLT-EDVKIFLHYNANKALMNLGFEALFPP 278
Query: 316 T---ENPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
NP + + + +FF + Y + D
Sbjct: 279 EVCRVNPAILAALSPNSDENHDFFSGAGSSYVIGKAVATTDD 320
>gi|76163066|gb|AAX30834.2| SJCHGC08068 protein [Schistosoma japonicum]
Length = 230
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 19/206 (9%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+ ++ + +L L P++Y W Y A + W EV + D W+S L
Sbjct: 33 SKDEIELEPLLKPNPHRFVLFPIEYHDIWHFYKKAVASFWTVEEVDLSKDFTHWES---L 89
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
ER I L FFA+S+ +V N++ + + PE R + Q E +HS + +
Sbjct: 90 KVGERHFISYVLAFFAASDGIVLENLLERFSQEVQIPEVRCFYGMQIAIENIHSEMYSLL 149
Query: 135 ITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
I + D E LFN + + KA WAL + D+ F + L
Sbjct: 150 IDTYIKDSKERDFLFNAISNLTCVAKKAQWALDWI------------GDSKSTFAERLVA 197
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKM 217
F V EG++F FA I L +
Sbjct: 198 FAAV-EGVFFSGSFAAIFWLKSEDLC 222
>gi|319404590|emb|CBI78196.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
rochalimae ATCC BAA-1498]
gi|319407580|emb|CBI81230.1| ribonucleoside-diphosphate reductase beta chain [Bartonella sp.
1-1C]
Length = 324
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 62/337 (18%), Positives = 121/337 (35%), Gaps = 29/337 (8%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ K + + N+L K W N W+P +VP+ +D+ W S LT++
Sbjct: 3 KITTKNPVVCAVNWNRLYDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTEE 56
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
ER + R +++ +++ L AF EAVH+ ++ I ++
Sbjct: 57 ERKLTIRVFTGLTLLDTVQNTVGAISLMADAVTEHEEAVLTNIAFMEAVHARSYSSIFST 116
Query: 138 LGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
L + + F E + KA L++ +
Sbjct: 117 LCSTVEVDDAFRWSEENTYLQKKARLILEHYEADEPLKKKI---------------ASTF 161
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
E FY+GF + K+ A+ + I+RDE++H + + +
Sbjct: 162 LESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFAKLDEAKKQ 221
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
E + + +L + +E Y + +GL + ++ + AN+ +G E LF
Sbjct: 222 EIKDFAFNLLFDLYNIECKYTEDLY--DAIGLT-EDVKVFLHYNANKALMNLGFEALFPP 278
Query: 316 T---ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NP + + + +FF + Y G +
Sbjct: 279 EVCRVNPAILAALSPNSDENHDFFSGSGSSYVIGKAV 315
>gi|222081801|ref|YP_002541166.1| ribonucleotide-diphosphate reductase subunit beta [Agrobacterium
radiobacter K84]
gi|221726480|gb|ACM29569.1| ribonucleoside-diphosphate reductase [Agrobacterium radiobacter
K84]
Length = 329
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 53/327 (16%), Positives = 111/327 (33%), Gaps = 28/327 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P +VP+ +D+ W L +E+ + R
Sbjct: 20 NWNRIEDDKDLEVWNRLTGNFWLPEKVPLSNDIPSW---AALKPEEQQLTIRVFTGLTLL 76
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + + +F EAVH+ ++ I ++L + +
Sbjct: 77 DTIQTSIGAPTLMEDSITSHEEAVYSNISFMEAVHARSYSSIFSTLCSTPDIDDAYRWSE 136
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + K+ L+ + + V E FY+GF +
Sbjct: 137 ENEHLQRKSALILEQYRNGD---------------PLKRKIASVFLESFLFYSGFYLPMY 181
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + +E + + +L E
Sbjct: 182 WSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLERLSEEGRQEIKDFAFDLLLELYD 241
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI 327
E Y VGL ++++ + AN+ +G E LF NP +
Sbjct: 242 NEAKYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEALFPPEACKVNPAILSALSP 298
Query: 328 DLKKEKNFFETRVTEYQ--QGAELKWD 352
+ + +FF + Y + + +
Sbjct: 299 NADENHDFFSGSGSSYVIGKAVATEDE 325
>gi|255023762|ref|ZP_05295748.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes FSL J1-208]
Length = 284
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 67/284 (23%), Positives = 127/284 (44%), Gaps = 15/284 (5%)
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
K L++ E+ +G A+ +S I I ++++P A +E +
Sbjct: 1 DAKQYPALSEQEKYAFDAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVI 59
Query: 127 HSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
H+ ++ Y++ S+ ++ +F + R P+I + + + + E
Sbjct: 60 HNESYSYVLASITNLQEQNRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGE 111
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
L + + EG+ FY+GFA +L R NKM G + +I RDE H F +VI
Sbjct: 112 TLVKALIQSSILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRA 171
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
I ENP L T E + + A LE ++ E + +G G++ Y+++ AN+
Sbjct: 172 ILGENPELQTDELVEYTHDAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKML 230
Query: 305 HQIGLEPLFK-YTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
+G+ L+ +++N W+ D + + +FFE R + Y++
Sbjct: 231 GMLGIPELYPGHSDNTMTWIKAYADNFTETKTDFFEMRNSSYKK 274
>gi|157148214|ref|YP_001455533.1| ribonucleotide-diphosphate reductase subunit beta [Citrobacter
koseri ATCC BAA-895]
gi|157085419|gb|ABV15097.1| hypothetical protein CKO_04025 [Citrobacter koseri ATCC BAA-895]
Length = 319
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 59/324 (18%), Positives = 117/324 (36%), Gaps = 28/324 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ + P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNIAGAPALMQDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA LQ+ + + V E FY+GF +
Sbjct: 127 ENAPLQRKAQIILQHY---------------TADNPLKKKIASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + E + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKGLEKLSESERDELKHFALDLLMELYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
E Y E G+V ++ + AN+ +G E LF NP +
Sbjct: 232 NESRYTEELYAETGWV----ADVNAFLCYNANKALMNLGYEALFPAEMAEVNPAILAALS 287
Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKAIE 311
>gi|34763895|ref|ZP_00144797.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|27886329|gb|EAA23602.1| Ribonucleoside-diphosphate reductase beta chain [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
Length = 245
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 58/257 (22%), Positives = 109/257 (42%), Gaps = 15/257 (5%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR-SDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M + E ++ ++++ +++ L ++Y WA + Y + N W+P +V
Sbjct: 1 MKVAVDRKKLFNPEGDDTLNARKIIKGNSTNLFNLNNVRYQWANQLYRTMMANFWIPEKV 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D ++ LT ER L F +S+ NNI I H++ PE L
Sbjct: 61 DLTQDKNDYE---NLTVPEREAYDGILSFLIFLDSIQTNNIP-NISDHVTAPEVNLLLAI 116
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
Q F+EA+HS ++QYII S+ + +++ +R+ + + ++ + Q
Sbjct: 117 QTFQEAIHSQSYQYIIESILPKQSRDLIYDKWRDDKVLFERNSFIAKIYQDFID------ 170
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
+ E + + + E ++FY GF L NKMVG ++ + I RDE H+
Sbjct: 171 --EQSDENFAKVIIANYLLESLYFYNGFNFFYLLASRNKMVGTSDIIRLINRDELSHVVL 228
Query: 238 GIDVINQIKIENPHLWT 254
+ I+
Sbjct: 229 FRSEWAEKTIKTDGFCP 245
>gi|227505793|ref|ZP_03935842.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
6940]
gi|227197639|gb|EEI77687.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
6940]
Length = 318
Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats.
Identities = 56/319 (17%), Positives = 114/319 (35%), Gaps = 34/319 (10%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
E + N W+P ++P+ +DL W + +E+ R + ++L ++
Sbjct: 20 EIWDRLTGNFWLPEKIPVSNDLPKW---GLMNAEEQWATMRVFAGLTALDTLQGAVGAIS 76
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
+ P L AF EAVH+ ++ I +L F E ++ K+
Sbjct: 77 LMPDAVTPHEEAVLCNIAFMEAVHAKSYSNIFMTLSSTPEINRAFRWAEESETLRYKSTR 136
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
++ + +S + E FY+GF L + A
Sbjct: 137 VREFYEGDNS---------------LMRKAASTLLESFLFYSGFYLPLRFASRGYLTNTA 181
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I+RDE++H + Q + + + ++ + EI Y +
Sbjct: 182 DVIRLIIRDEAVHGYYIGYKYQQAVKQLNPAQQQGLKDSVFDLVFDLYDNEITYTEKIY- 240
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI------DLKKEKNF 335
+G ++++++ AN+ + +G E LF E + I D + +F
Sbjct: 241 -DALGWT-EDVKRFLRYNANKALNNLGYEGLFPSDECR---VDPAILSSLAPDANETHDF 295
Query: 336 FETRVTEYQ--QGAELKWD 352
F + Y + E + D
Sbjct: 296 FSGSGSSYVIGKAEETQDD 314
>gi|69245952|ref|ZP_00603724.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO]
gi|227552561|ref|ZP_03982610.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330]
gi|257880353|ref|ZP_05660006.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
1,230,933]
gi|257882206|ref|ZP_05661859.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
1,231,502]
gi|257885400|ref|ZP_05665053.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
1,231,501]
gi|257888211|ref|ZP_05667864.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
1,141,733]
gi|257891012|ref|ZP_05670665.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
1,231,410]
gi|257894265|ref|ZP_05673918.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
1,231,408]
gi|257896901|ref|ZP_05676554.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12]
gi|257899642|ref|ZP_05679295.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15]
gi|258614695|ref|ZP_05712465.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecium DO]
gi|260562343|ref|ZP_05832857.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68]
gi|261209282|ref|ZP_05923674.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6]
gi|289567001|ref|ZP_06447402.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium D344SRF]
gi|293378468|ref|ZP_06624631.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium PC4.1]
gi|293553988|ref|ZP_06674590.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E1039]
gi|293563177|ref|ZP_06677635.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E1162]
gi|293568383|ref|ZP_06679704.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E1071]
gi|293570828|ref|ZP_06681875.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E980]
gi|294615274|ref|ZP_06695151.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E1636]
gi|294617336|ref|ZP_06696975.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E1679]
gi|294623134|ref|ZP_06702020.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium U0317]
gi|314939361|ref|ZP_07846602.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium TX0133a04]
gi|314941564|ref|ZP_07848449.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium TX0133C]
gi|314949609|ref|ZP_07852933.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium TX0082]
gi|314953716|ref|ZP_07856591.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium TX0133A]
gi|314992172|ref|ZP_07857616.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium TX0133B]
gi|314997663|ref|ZP_07862593.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium TX0133a01]
gi|68195482|gb|EAN09926.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium DO]
gi|227178310|gb|EEI59282.1| Ribonucleoside-diphosphate reductase [Enterococcus faecium TX1330]
gi|257814581|gb|EEV43339.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
1,230,933]
gi|257817864|gb|EEV45192.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
1,231,502]
gi|257821256|gb|EEV48386.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
1,231,501]
gi|257824265|gb|EEV51197.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
1,141,733]
gi|257827372|gb|EEV53998.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
1,231,410]
gi|257830644|gb|EEV57251.1| ribonucleoside-diphosphate reductase [Enterococcus faecium
1,231,408]
gi|257833466|gb|EEV59887.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com12]
gi|257837554|gb|EEV62628.1| ribonucleoside-diphosphate reductase [Enterococcus faecium Com15]
gi|260073267|gb|EEW61608.1| ribonucleoside-diphosphate reductase [Enterococcus faecium C68]
gi|260076828|gb|EEW64563.1| ribonucleoside-diphosphate reductase [Enterococcus faecium TC 6]
gi|289161202|gb|EFD09101.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium D344SRF]
gi|291588904|gb|EFF20731.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E1071]
gi|291591871|gb|EFF23503.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E1636]
gi|291596409|gb|EFF27663.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E1679]
gi|291597503|gb|EFF28668.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium U0317]
gi|291601845|gb|EFF32095.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E1039]
gi|291604868|gb|EFF34344.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E1162]
gi|291609096|gb|EFF38371.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E980]
gi|292642797|gb|EFF60944.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium PC4.1]
gi|313588298|gb|EFR67143.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium TX0133a01]
gi|313593275|gb|EFR72120.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium TX0133B]
gi|313594300|gb|EFR73145.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium TX0133A]
gi|313599623|gb|EFR78466.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium TX0133C]
gi|313641346|gb|EFS05926.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium TX0133a04]
gi|313644033|gb|EFS08613.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium TX0082]
Length = 321
Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats.
Identities = 62/322 (19%), Positives = 121/322 (37%), Gaps = 30/322 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W++ + L E+ +
Sbjct: 7 EAINWNEIEDIIDKSTWE---KLTEQFWLDTRIPLSNDLDDWRTLSQL---EKDTVGHVF 60
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + + + + + + P L F E+VH+ ++ I ++L + E
Sbjct: 61 GGLTLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 120
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F+ P + KA + + + V E FY+G
Sbjct: 121 IFDWTNTNPYLQKKAERINEIY---------------KHGTPLEKKIASVFLETFLFYSG 165
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E P + + +
Sbjct: 166 FYTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETLKDWMYNL 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L+E E Y E +G + ++++ AN+ +G++PLF NP
Sbjct: 226 LYELYENEERYTEELY--DPIGWT-EEVKTFLRYNANKALMNLGMDPLFPDTANDVNPIV 282
Query: 322 WMSEVIDLKKEKNFFETRVTEY 343
M+ + +FF Y
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGY 303
>gi|319948549|ref|ZP_08022680.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea
P4]
gi|319437796|gb|EFV92785.1| ribonucleotide-diphosphate reductase subunit beta [Dietzia cinnamea
P4]
Length = 338
Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats.
Identities = 63/311 (20%), Positives = 117/311 (37%), Gaps = 31/311 (9%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+P +VP+ +D+ W++ LT+ E+ M R +++ +++ S P
Sbjct: 48 NFWLPEKVPVSNDIPSWQT---LTEYEQTMTARVFTGLTLLDTIQGTVGAVSMIPDASTP 104
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTL 169
L AF E+VH+ ++ I ++L E F E P + KA L Y
Sbjct: 105 HEEAVLTNIAFMESVHAKSYSTIFSTLCSTPQIDEAFRWAEENPYLQRKAKIILGYYAG- 163
Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
+ + V+ E FY+GF + K+ A+ + I+R
Sbjct: 164 --------------DNPLKRKIASVMLESFMFYSGFYLPMRWSSRAKLTNTADVIRLIIR 209
Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
DE++H + + E + + +L E E Y + VG
Sbjct: 210 DEAVHGYYIGYKYQRGLEHVTQAERDELKDYTFELLFELYDNEADYTEDLY--DPVGWT- 266
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
++++++ AN+ +G E +F E +P + + + +FF + Y G
Sbjct: 267 EDVKKFLRYNANKALMNMGYEGMFPKDETDVDPAILSALSPNADENHDFFSGSGSSYVMG 326
Query: 347 AE-----LKWD 352
WD
Sbjct: 327 KAEATEDEDWD 337
>gi|310722637|ref|YP_003969460.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5]
gi|306021480|gb|ADM80014.1| NrdB aerobic NDP reductase small subunit [Aeromonas phage phiAS5]
Length = 376
Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats.
Identities = 62/317 (19%), Positives = 121/317 (38%), Gaps = 27/317 (8%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
+K+ + + W P EV + D+ + + LT+ E+ + +NL + + +S+
Sbjct: 31 VKHPVIDKLTEKQLSFFWRPEEVDLSKDMIDF---SRLTEAEQYVFTQNLKYQSLLDSVQ 87
Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
L +S+ ++ +F E +HS ++ +I+ +L ++ E+F+ I
Sbjct: 88 GRAPNLTFLPMVSDIALETWITTWSFSETIHSRSYTHIMRNLYVNPTEVFDRIMLDEKIM 147
Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF---------------EGMWF 201
+A QY L T Q F L V + E + F
Sbjct: 148 KRATAVTQYYDDLIREK-RTYDMLCCQVFPAGLQVQQLTKVKEALYLAKHAVNALEAIRF 206
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----F 257
Y FA S M G A+ + I RDE LHL I + +
Sbjct: 207 YVSFACTFSFAERGLMEGNAKIMKLIARDEQLHLKGTQYQIRTWQNGEDDPEMVDIAKRL 266
Query: 258 QQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-- 314
+ K+ + +A E +A + + + L+ S Y+ ++ R GL +
Sbjct: 267 ESKAVQIFLDAAEQEKEWARDLLSRVSIPSLSLQSMLDYIDYLTASRMQSAGLPIPEELN 326
Query: 315 -YTENPFPWMSEVIDLK 330
+++P PW+ + ++ +
Sbjct: 327 VPSKHPLPWIRKWLNSE 343
>gi|289423472|ref|ZP_06425274.1| ribonucleoside-diphosphate reductase, beta subunit
[Peptostreptococcus anaerobius 653-L]
gi|289156106|gb|EFD04769.1| ribonucleoside-diphosphate reductase, beta subunit
[Peptostreptococcus anaerobius 653-L]
Length = 337
Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats.
Identities = 68/304 (22%), Positives = 116/304 (38%), Gaps = 19/304 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+P EVP+ D+ W LT+ ER++ KR L ++ N+ + ++
Sbjct: 36 FWDQNVKQFWLPEEVPISKDIPSWAE---LTESERILYKRVLAGLTLLDTKQGNDGIPSM 92
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
N + + L E +H+ ++ I T+L + +LF E P + KA
Sbjct: 93 MDLTENFQRKAVLSFMGTMEEIHAKSYSSIFTTLLSKHEIDDLFLWIEEEPLLQNKAKIV 152
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
L+ + + P V E FY+GF L L KM+ E
Sbjct: 153 LRQYKNVEDPKSL-----------YMSMATSVFLESFLFYSGFFFPLYLAGQGKMIASGE 201
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDESLH + + + E + E + +L E E Y
Sbjct: 202 IISLILRDESLHGKYIGLLAQEKLREFSYDDRNELKDAVYRLLKELMENEEKYTRMLYEG 261
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
+GL ++++ AN +G E +K ++ + K +FF T+
Sbjct: 262 --LGL-EDQVINFLRYNANSALVNLGFEEFYKVEPVNAIVLNGLSTETKTHDFFSTKGNG 318
Query: 343 YQQG 346
YQ+G
Sbjct: 319 YQKG 322
>gi|319899230|ref|YP_004159323.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
clarridgeiae 73]
gi|319403194|emb|CBI76753.1| ribonucleoside-diphosphate reductase beta chain [Bartonella
clarridgeiae 73]
Length = 324
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 62/325 (19%), Positives = 117/325 (36%), Gaps = 29/325 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W N W+P +VP+ +D+ W S LT++ER + R
Sbjct: 15 NWNRLHDEKDLEVWN---RLTGNFWLPEKVPLSNDIPSWAS---LTEEERKLTIRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
+++ +++ L AF EAVH+ ++ I ++L + + F
Sbjct: 69 TLLDTVQNTVGAISLMADAVTEHEEAVLTNIAFMEAVHARSYSSIFSTLCSTVEVDDAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA L++ + + E FY+GF
Sbjct: 129 WSEENTYLQKKARLILEHYEANEPLKKKI---------------ASTLLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + +E + + ML +
Sbjct: 174 PMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQLGFANLDKAKRQEIKDFAFNMLFD 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT---ENPFPWMS 324
+E Y +GL + ++ + AN+ +G E LF NP +
Sbjct: 234 LYNIECKYTENLY--DSIGLT-EDVKVFLHYNANKALMNLGFEALFPPEVCRVNPAILAA 290
Query: 325 EVIDLKKEKNFFETRVTEYQQGAEL 349
+ + +FF + Y G +
Sbjct: 291 LSPNSDENHDFFSGSGSSYVIGKAV 315
>gi|308173699|ref|YP_003920404.1| ribonucleoside-diphosphate reductase minor subunit [Bacillus
amyloliquefaciens DSM 7]
gi|307606563|emb|CBI42934.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
amyloliquefaciens DSM 7]
gi|328553367|gb|AEB23859.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
amyloliquefaciens TA208]
gi|328911843|gb|AEB63439.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
amyloliquefaciens LL3]
Length = 329
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 63/309 (20%), Positives = 126/309 (40%), Gaps = 22/309 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L +E+ + L ++ N + +
Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
H+ + + L A E VH+ ++ I +L E E+F ++ + KA+
Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAHT 137
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ + + K D+ L V V E FY+GF L K++
Sbjct: 138 VVGLYRAI---------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E I+RDE++H + + +I + E ++ + +L E E+ Y +
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEAKKAELREFAIELLEELYHNELEYTEDLYD 248
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
+ VGL+ ++++++ AN+ +G +P F+ + NP + ++ K + +FF +
Sbjct: 249 Q--VGLS-HDVKKFIRYNANKALMNLGFDPYFEEEDINPI--VLNGLNTKTKSHDFFSMK 303
Query: 340 VTEYQQGAE 348
Y++
Sbjct: 304 GNGYKKATV 312
>gi|216905873|ref|YP_002333501.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 9]
gi|216410027|dbj|BAH02445.1| small subunit of ribonucleotide reductase [Equid herpesvirus 9]
Length = 321
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 67/313 (21%), Positives = 117/313 (37%), Gaps = 34/313 (10%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
+ N W+ T++P+ DDL LT ER + F ++++ LV N
Sbjct: 28 PDIEHLRSLSVANRWLDTDLPISDDLKD---VAKLTPAEREFYRFLFAFLSAADDLVNLN 84
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG----ELFNMYREVPSI 155
+ + + + Y + Q E HS + I L ++ +I
Sbjct: 85 -LGDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDAAARARYVASIIGDAAI 143
Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
K W K + + + ++ ++ EG++F + FA I L N
Sbjct: 144 KRKVAW--------------LQAKVRECGSVAEKYILMILIEGLFFASSFASIAYLRTHN 189
Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
V + I RDE++H + N + K ++ + EA +E +
Sbjct: 190 LFVVTCQSNDLISRDEAIHTRASCCIYNNYL----GGFEKPEPKRIYELFSEAVNIECEF 245
Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKK 331
P+ L+ Y+++ A+R +IGL PLF T P +M+ ++K
Sbjct: 246 LLSHAPQNSHLLDIGEIISYVRYSADRLLGEIGLSPLFNAPKPSTSFPLAFMT----VEK 301
Query: 332 EKNFFETRVTEYQ 344
NFFE R T Y
Sbjct: 302 HTNFFERRSTAYS 314
>gi|296117839|ref|ZP_06836422.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
ammoniagenes DSM 20306]
gi|295969070|gb|EFG82312.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
ammoniagenes DSM 20306]
Length = 328
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 61/333 (18%), Positives = 120/333 (36%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N + W+ N W+P ++P+ +D+ W+ +T E+ +
Sbjct: 17 EGINWNDIGDSIDNDIWD---RLTTNFWLPEKIPVSNDVQSWR---NMTAQEQDATLKVF 70
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
++L +++ H P+ AF E+VH+ ++ I +L E
Sbjct: 71 TGLTVLDTLQGTVGAVSLIPHAVTPQEEAVYTNIAFMESVHAKSYSNIFMTLASTPEIDE 130
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
F RE + KA L + + +FV V+ E FY+G
Sbjct: 131 AFRWARENEHMQYKARKILSEYASGE---------------PEKMFVASVMLESFLFYSG 175
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L + K+ A+ + I+RDE++H + N Q + +
Sbjct: 176 FYLPLRMASTGKITNAADIIRLIIRDEAIHGYYIGYKYQNYLK-NDKARHAANQDEIVDL 234
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--W 322
L + E + + +G + ++++ AN+ + +G E +F E F
Sbjct: 235 LLDLYDNESHFTEAVYDQ--IGWT-EDVKAFLRYNANKAMNNLGYEAIFPQEECKFNAGV 291
Query: 323 MSEV-IDLKKEKNFFETRVTEYQ--QGAELKWD 352
M+ + + +FF + Y + E D
Sbjct: 292 MTSLDPSANENHDFFSGSGSSYVIGKAEETTDD 324
>gi|255724184|ref|XP_002547021.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404]
gi|240134912|gb|EER34466.1| hypothetical protein CTRG_01327 [Candida tropicalis MYA-3404]
Length = 252
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L + P+KY W Y A + W EV + DL W N L D+ER
Sbjct: 89 EEPLLQENKRRYVMFPIKYHEIWNFYKKAEASFWTCEEVDLSKDLDDWN--NKLNDNERY 146
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
+ R L FFA+S+ +V N++ + +PE + + Q E +HS + +I +
Sbjct: 147 FVSRVLAFFAASDGIVGENLIENFSAEVQSPEAKSFYGFQIMMENIHSEMYSLLIETYVK 206
Query: 141 DEGE---LFNMYREVPSITAKANWALQYTQT 168
D E LFN +P IT KA WA+++ Q
Sbjct: 207 DPQEADFLFNAIENIPCITKKAEWAIKWIQD 237
>gi|311068263|ref|YP_003973186.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
atrophaeus 1942]
gi|310868780|gb|ADP32255.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
atrophaeus 1942]
Length = 328
Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats.
Identities = 67/315 (21%), Positives = 129/315 (40%), Gaps = 24/315 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L +E+ + L ++ N + +
Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
H+ + + L A E VH+ ++ I +L E E+F ++ + KA
Sbjct: 78 ADHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKFLQKKAQI 137
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ Q++ K D+ L V V E FY+GF L K++
Sbjct: 138 IVGLYQSI---------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E I+RDE++H + + +I + P E ++ S +L + E+ Y +
Sbjct: 189 EIINLILRDEAIHGVYIGLLAQEIYNKQPEEKKAELREFSIELLEQLYENELEYTEDLYD 248
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
+ VGL+ ++++++ AN+ +G + F+ E NP + ++ K + +FF +
Sbjct: 249 Q--VGLS-HDVKKFIRYNANKALMNLGFDSYFEEEEINPI--VLNGLNTKTKSHDFFSMK 303
Query: 340 VTEYQQGAE--LKWD 352
Y++ +K D
Sbjct: 304 GNGYKKATVEPIKDD 318
>gi|12084869|ref|NP_073334.1| ribonucleotide reductase subunit 2 [Meleagrid herpesvirus 1]
gi|11095873|gb|AAG30080.1|AF282130_43 UL40 ribonucleotide reductase small subunit [Meleagrid herpesvirus
1]
gi|12025152|gb|AAG45778.1|AF291866_45 UL40 ribonucleotide reductase, small subunit [Meleagrid herpesvirus
1]
Length = 355
Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats.
Identities = 62/312 (19%), Positives = 118/312 (37%), Gaps = 20/312 (6%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
+ N W TE + DDL L++DE+ + F ++++ LV N
Sbjct: 63 PDIGNLRSLSIMNRWTETEFVIADDLED---VGKLSEDEKNFYRFLFTFLSAADDLVNLN 119
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
+ ++ + + Y Q EAVHS + I L ++ Y +
Sbjct: 120 -IDSLLSLFTQKDIHHYYFEQECIEAVHSRAYSIIQLMLFSNDQAARQEYVTSTLRSPAI 178
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
L++ + + A+ + + ++ ++ EG++F FA I L N V
Sbjct: 179 LSKLEWLER----------RVAECTSIAEKYILMILIEGIFFTASFAAIAYLRVNNLFVV 228
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ I RDE++H+ + N K + T+ EA LE +
Sbjct: 229 TCQINNLISRDEAIHVEASCCIFK-----NYLAGPKPTTARIHTLFKEAVRLECEFLRTA 283
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
P+ +N + Y+++ A+R + + P++ + P + ++ NFFE R
Sbjct: 284 APRTSNIINIDAICSYVRYSADRLLRALDILPIYDEPKPPADFPLVLMSAASNTNFFERR 343
Query: 340 VTEYQQGAELKW 351
T Y G+
Sbjct: 344 NTAYS-GSVSND 354
>gi|308187851|ref|YP_003931982.1| ribonucleoside-diphosphate reductase beta chain [Pantoea vagans
C9-1]
gi|308058361|gb|ADO10533.1| ribonucleoside-diphosphate reductase beta chain [Pantoea vagans
C9-1]
Length = 326
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 61/323 (18%), Positives = 116/323 (35%), Gaps = 26/323 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +DL W++ L ++ + R
Sbjct: 17 NWNRIQDDKDLEVWNRLTSNFWLPEKVPLSNDLPGWQT---LDKQQQQLTIRVFTGLTLL 73
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + P L +F EAVH+ ++ I ++L + +
Sbjct: 74 DTIQNVIGAPGLMEDAITPHEEAVLSNISFMEAVHARSYSSIFSTLCNTQDVDAAYQWSE 133
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA L++ + V E FY+GF +
Sbjct: 134 ENGPLQNKARIILEHYRADDPLKKKI---------------ASVFLESFLFYSGFWLPMY 178
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + Q L +E QQ + +L
Sbjct: 179 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQALASADDLRREELQQFAYDLLLALYE 238
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+AY G VG + ++ + AN+ +G E LF NP +
Sbjct: 239 NEVAYTEALY--GDVGW-VDEVKTFLHYNANKALMNLGYEALFPAELTAVNPAILSALSP 295
Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 296 NADENHDFFSGSGSSYVMGKAVE 318
>gi|332031690|gb|EGI71130.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex
echinatior]
Length = 210
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 22/208 (10%)
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
LFN +P + KANWAL + + + V + EG++F
Sbjct: 10 LFNAIETLPCVRKKANWALNWIN-------------HESATFPERVVAFAAVEGIFFSGS 56
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
FA I L + M G+ + I RDE LH +F + I + ++ +++
Sbjct: 57 FAAIFWLKKRGVMPGLTFSNELISRDEGLHCDFACLMFKHIVQKPSF-------ERVKSI 109
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
+ +A +E + + +P +G+N Y++F+A+R +G E ++ +ENPF +M
Sbjct: 110 VMDAVEIEKEFLTQALPVELIGMNRTFMCNYIEFVADRLFVALGFEKVYN-SENPFSFMD 168
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352
I + + NFFE +V EY++ ++ D
Sbjct: 169 -FISMMGKTNFFEKKVGEYKKFGVMEED 195
>gi|52080345|ref|YP_079136.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
licheniformis ATCC 14580]
gi|52785724|ref|YP_091553.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
licheniformis ATCC 14580]
gi|319645870|ref|ZP_08000100.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
BT1B_CT2]
gi|52003556|gb|AAU23498.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
licheniformis ATCC 14580]
gi|52348226|gb|AAU40860.1| NrdF [Bacillus licheniformis ATCC 14580]
gi|317391620|gb|EFV72417.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus sp.
BT1B_CT2]
Length = 325
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 64/309 (20%), Positives = 123/309 (39%), Gaps = 22/309 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L +E+ + L ++ N + +
Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPLV 77
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
H+ + + L A E VH+ ++ I +L E E+F ++ + KA
Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQI 137
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ + + + D+ L V V E FY+GF L K++
Sbjct: 138 IVGLYEKI---------RQGDKISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E I+RDE++H + + +I + +E S +L E E+ Y +
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNQQTPEKKEELYAFSIDLLKELYENELEYTEDLYD 248
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
+ VGL+ ++++++ AN+ +G E F+ E NP + ++ K + +FF +
Sbjct: 249 Q--VGLS-HDVKKFIRYNANKALMNLGFEAYFEEEEINPI--VLNGLNTKTKSHDFFSMK 303
Query: 340 VTEYQQGAE 348
Y++
Sbjct: 304 GNGYKKATV 312
>gi|317049232|ref|YP_004116880.1| ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
gi|316950849|gb|ADU70324.1| Ribonucleoside-diphosphate reductase [Pantoea sp. At-9b]
Length = 322
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 59/323 (18%), Positives = 115/323 (35%), Gaps = 26/323 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +DL W++ L ++ + R
Sbjct: 13 NWNRIQDEKDLEVWNRLTSNFWLPEKVPLSNDLPAWQT---LDKQQQQLTIRVFTGLTLL 69
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + P L +F EAVH+ ++ I ++L +
Sbjct: 70 DTIQNVIGAPGLMEDALTPHEEAVLSNVSFMEAVHARSYSSIFSTLCNTADVDAAYRWSE 129
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ KA L++ + V E FY+GF +
Sbjct: 130 ENEALQNKAKIVLEHYRADDPLKKKI---------------ASVFLESFLFYSGFWLPMY 174
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + +E QQ + +L
Sbjct: 175 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKALENVDDARREELQQFAIELLLALYE 234
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+ Y VG A + ++ + AN+ +G E LF T NP +
Sbjct: 235 NEVVYTEALYAD--VGW-AEEVKTFLHYNANKALMNLGYEALFPAELTTVNPAILAALSP 291
Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 292 NADENHDFFSGSGSSYVMGKAVE 314
>gi|126650012|ref|ZP_01722245.1| ribonucleotide-diphosphate [Bacillus sp. B14905]
gi|126593184|gb|EAZ87146.1| ribonucleotide-diphosphate [Bacillus sp. B14905]
Length = 322
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/305 (20%), Positives = 118/305 (38%), Gaps = 21/305 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W P E+ + D+ WKS + + K+ +++ N + +
Sbjct: 22 FWDQQWKQIWFPEEIAVSKDIKQWKSF-----EHQDTYKKVFAGLTLLDTVQTNIGMNRV 76
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
+ + + + L EA+H+ ++ YI T+L +E ELF ++ + KAN
Sbjct: 77 AAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEYLQYKANKI 136
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
++ ++ D E L V+ E FY+GF L LG + AE
Sbjct: 137 ADIYNSI---------EEGDSESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAE 187
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H + + + Q +L + E+ Y +
Sbjct: 188 IISLILRDESIHGVAVGFFAQNLYKQFSKEKQESLQLWGYELLLDLYQNEMKYTEDIY-- 245
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
GL+ + Y+++ AN+ +G E +F E NP M+ + + +FF +
Sbjct: 246 AETGLSPE-VKAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKGA 303
Query: 342 EYQQG 346
Y +
Sbjct: 304 TYAKA 308
>gi|254976540|ref|ZP_05273012.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
difficile QCD-66c26]
gi|255093925|ref|ZP_05323403.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
difficile CIP 107932]
gi|255315677|ref|ZP_05357260.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
difficile QCD-76w55]
gi|255518338|ref|ZP_05386014.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
difficile QCD-97b34]
gi|255651455|ref|ZP_05398357.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
difficile QCD-37x79]
gi|260684515|ref|YP_003215800.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
difficile CD196]
gi|260688173|ref|YP_003219307.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
difficile R20291]
gi|260210678|emb|CBA65434.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
difficile CD196]
gi|260214190|emb|CBE06438.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
difficile R20291]
Length = 323
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 69/306 (22%), Positives = 125/306 (40%), Gaps = 23/306 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+P E+ + D+ +W L++ E+ + K+ LG ++ NN + ++
Sbjct: 25 FWEQNVKQFWLPEEISVSKDIKVWNE---LSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
N + + L E +H+ ++ I +L L+ ELF P++ KA+
Sbjct: 82 MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLV 141
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
L + ++ V V E FY+GF L L KMV E
Sbjct: 142 LAQYENTTNQEGL-----------YLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGE 190
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDESLH + + +I + K ++K ++L+ EI Y + +
Sbjct: 191 IISLILRDESLHGKYIGLLAQEIYDSFDKMDKKMLEEKMYSILYSLMENEIEYTNVIYRE 250
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340
GL ++++ ANR +G E L+ NP + + + + +FF T+
Sbjct: 251 S--GLEKE-VVNFLKYNANRALENLGFEKLYTVDAINPI--VLNGLSTETKTHDFFSTKG 305
Query: 341 TEYQQG 346
YQ+G
Sbjct: 306 NGYQKG 311
>gi|257865182|ref|ZP_05644835.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
EC30]
gi|257871507|ref|ZP_05651160.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
EC10]
gi|257874804|ref|ZP_05654457.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
EC20]
gi|325571550|ref|ZP_08147050.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
casseliflavus ATCC 12755]
gi|257799116|gb|EEV28168.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
EC30]
gi|257805671|gb|EEV34493.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
EC10]
gi|257808970|gb|EEV37790.1| ribonucleoside-diphosphate reductase [Enterococcus casseliflavus
EC20]
gi|325156026|gb|EGC68222.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
casseliflavus ATCC 12755]
Length = 321
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 64/333 (19%), Positives = 124/333 (37%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W++ L+ E+ +
Sbjct: 7 EAINWNEIEDIIDKSTWE---KLTEQFWLDTRIPLSNDLDDWRT---LSPLEKTTVGYVF 60
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + + + + + + P L F E+VH+ ++ I ++L +
Sbjct: 61 GGLTLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKAEIAD 120
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F P + KA + + + V E FY+G
Sbjct: 121 IFEWTNTNPYLQKKAERINEIYKNGTPLEKKI---------------ASVFLETFLFYSG 165
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E P ++ + +
Sbjct: 166 FYTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQQKLKDWMYDL 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L+E E Y E +G + ++++ AN+ +G +PLF NP
Sbjct: 226 LYELYENEERYTEELY--DEIGWT-EEVKTFLRYNANKALMNLGQDPLFPDTANDVNPIV 282
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G+ +K D
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMKDD 314
>gi|330941350|gb|EGH44202.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. pisi str. 1704B]
Length = 109
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 66/109 (60%), Positives = 82/109 (75%)
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
QIKIENPHLW E ++++ M+ + T LEI YA +TMP+G +G+NA E Y++FIANRR
Sbjct: 1 QIKIENPHLWDAEMKEEATQMILQGTQLEIEYARDTMPRGVLGMNAAMMEDYLKFIANRR 60
Query: 304 CHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G L WD
Sbjct: 61 LSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGGALSWD 109
>gi|200386806|ref|ZP_03213418.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|199603904|gb|EDZ02449.1| ribonucleoside-diphosphate reductase, beta subunit [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
Length = 319
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 57/324 (17%), Positives = 117/324 (36%), Gaps = 28/324 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P ++P+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKMPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P + KA L + + V E FY+GF +
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEV 326
EI Y G+V + ++ + AN+ +G E LF NP +
Sbjct: 232 NEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 287
Query: 327 IDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 288 PNADENHDFFSGSGSSYVMGKTVE 311
>gi|126700615|ref|YP_001089512.1| ribonucleoside-diphosphate reductase subunit beta [Clostridium
difficile 630]
gi|255102106|ref|ZP_05331083.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
difficile QCD-63q42]
gi|255307975|ref|ZP_05352146.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
difficile ATCC 43255]
gi|115252052|emb|CAJ69888.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
reductase small subunit) [Clostridium difficile]
Length = 323
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 68/306 (22%), Positives = 125/306 (40%), Gaps = 23/306 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+P E+ + D+ +W L++ E+ + K+ LG ++ NN + ++
Sbjct: 25 FWEQNVKQFWLPEEISVSKDIKVWNE---LSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
N + + L E +H+ ++ I +L L+ ELF P++ KA+
Sbjct: 82 MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNLEIDELFEWIETEPTLQRKADLV 141
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
L + ++ V V E FY+GF L L KMV E
Sbjct: 142 LAQYENTTNQEGL-----------YLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGE 190
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDESLH + + +I + + ++K ++L+ EI Y + +
Sbjct: 191 IISLILRDESLHGKYIGLLAQEIYDSFDKMDKEMLEEKMYSILYSLMENEIEYTNVIYRE 250
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340
GL ++++ ANR +G E L+ NP + + + + +FF T+
Sbjct: 251 S--GLEKE-VVNFLKYNANRALENLGFEKLYTVDAINPI--VLNGLSTETKTHDFFSTKG 305
Query: 341 TEYQQG 346
YQ+G
Sbjct: 306 NGYQKG 311
>gi|325989612|ref|YP_004249311.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma suis
KI3806]
gi|323574697|emb|CBZ40353.1| Ribonucleoside-diphosphate reductase beta chain [Mycoplasma suis]
Length = 330
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 66/312 (21%), Positives = 129/312 (41%), Gaps = 24/312 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ E+P+ D +W+ LT+ E+ + + L ++ + I
Sbjct: 28 FWDQNVRQFWVDEEIPLSGDKLVWQ--ARLTEKEKDVYVKVLVSLTLLDTHQGAIGMNRI 85
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA 162
+ + + L A E +H+ ++ I +L E ELF ++ PS+ K +
Sbjct: 86 CLAVPDLPTKAVLQFMAMMEQMHAKSYSSIFCTLLSTEQINELFEWIKKEPSLQKKVDIV 145
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+ Y + + DQE L V V E FY+GF +L L M+ E
Sbjct: 146 VSYYENI-----------KDQESLYMAMVASVFLESFLFYSGFFYMLYLSSQGLMINSGE 194
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-P 281
I+RDE++H + ++ +++ ++ +++ ++L E EI Y + P
Sbjct: 195 IINLIIRDEAIHGLYIGNLASKLFSTFDSEKQEKLKKQVYSLLEELMENEIEYTEKIYSP 254
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFET 338
VG Q++++ AN+ + LE + TE NP + + + K +FF T
Sbjct: 255 INLVG----EVIQFLKYNANKALQNLDLEEKYDVTENDINPMIF-NGLNTSTKNHDFFST 309
Query: 339 RVTEYQQGAELK 350
+ Y + ++
Sbjct: 310 KGNGYIKTTHVE 321
>gi|169827410|ref|YP_001697568.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
sphaericus C3-41]
gi|168991898|gb|ACA39438.1| Ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
sphaericus C3-41]
Length = 318
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/305 (20%), Positives = 118/305 (38%), Gaps = 21/305 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W P E+ + D+ WKS + + K+ +++ N + +
Sbjct: 18 FWDQQWKQIWFPEEIAVSKDIQQWKSF-----EHQDTYKKVFAGLTLLDTVQTNIGMNRV 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
+ + + + L EA+H+ ++ YI T+L +E ELF ++ + KAN
Sbjct: 73 AAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEYLQYKANKI 132
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
++ ++ D E L V+ E FY+GF L LG + AE
Sbjct: 133 ADIYNSI---------EEGDAESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAE 183
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H + + + Q +L + E+ Y +
Sbjct: 184 IISLILRDESIHGVAVGFFAQNLYKQFSKEKQEALQLWGYELLLDLYQNEMKYTEDIY-- 241
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
GL+ + Y+++ AN+ +G E +F E NP M+ + + +FF +
Sbjct: 242 AETGLSPE-VKAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKGA 299
Query: 342 EYQQG 346
Y +
Sbjct: 300 TYAKA 304
>gi|82545243|ref|YP_409190.1| ribonucleotide-diphosphate reductase subunit beta [Shigella boydii
Sb227]
gi|81246654|gb|ABB67362.1| ribonucleoside-diphosphate reductase 2, beta chain, frag [Shigella
boydii Sb227]
gi|320186462|gb|EFW61190.1| ribonucleotide-diphosphate reductase subunit beta [Shigella
flexneri CDC 796-83]
gi|332091953|gb|EGI97031.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
boydii 3594-74]
Length = 304
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 59/314 (18%), Positives = 116/314 (36%), Gaps = 29/314 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L ++ + P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPYALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E + KA Q+ + V E FY+GF
Sbjct: 124 WSEENAPLQRKAQIIQQHYRGDDPLKKKI---------------ASVFLESFLFYSGFWL 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 169 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLE 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E+ Y+ E + A + ++ + AN+ +G EPLF NP +
Sbjct: 229 LYDNELQYSDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAA 285
Query: 325 EVIDLKKEKNFFET 338
+ + +FF
Sbjct: 286 LSPNADENHDFFSG 299
>gi|255656920|ref|ZP_05402329.1| ribonucleoside-diphosphate reductase beta chain [Clostridium
difficile QCD-23m63]
gi|296452239|ref|ZP_06893946.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
difficile NAP08]
gi|296877591|ref|ZP_06901622.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
difficile NAP07]
gi|296258926|gb|EFH05814.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
difficile NAP08]
gi|296431442|gb|EFH17258.1| ribonucleotide-diphosphate reductase subunit beta [Clostridium
difficile NAP07]
Length = 323
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 67/306 (21%), Positives = 124/306 (40%), Gaps = 23/306 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+P E+ + D+ +W L++ E+ + K+ LG ++ NN + ++
Sbjct: 25 FWEQNVKQFWLPEEISVSKDIKIWNE---LSNKEKELYKKVLGGLTLLDTKQGNNGIPSM 81
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
N + + L E +H+ ++ I +L + ELF P++ KA+
Sbjct: 82 MSLTENLQRKAVLSFMGTMEEIHAKSYSSIFMTLLSNSEIDELFEWIETEPTLQRKADLV 141
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
L + ++ V V E FY+GF L L KMV E
Sbjct: 142 LAQYENTTNQEGL-----------YLSMVTSVFLESFLFYSGFFYPLYLSGQGKMVASGE 190
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDESLH + + +I + + ++K ++L+ EI Y + +
Sbjct: 191 IISLILRDESLHGKYIGLLAQEIYDSFDKMDKEILEEKMYSILYRLMENEIEYTNIIYRE 250
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340
GL ++++ ANR +G E L+ NP + + + + +FF T+
Sbjct: 251 S--GLEKE-VVNFLKYNANRALENLGFEKLYTVDAINPI--VLNGLSTETKTHDFFSTKG 305
Query: 341 TEYQQG 346
YQ+G
Sbjct: 306 NGYQKG 311
>gi|325973169|ref|YP_004250233.1| ribonucleoside-diphosphate reductase subunit beta [Mycoplasma suis
str. Illinois]
gi|323651771|gb|ADX97853.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma suis
str. Illinois]
Length = 330
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 66/312 (21%), Positives = 129/312 (41%), Gaps = 24/312 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ E+P+ D +W+ LT+ E+ + + L ++ + I
Sbjct: 28 FWDQNVRQFWVDEEIPLSGDKLVWQ--ARLTEKEKDVYVKVLVSLTLLDTHQGAIGMNRI 85
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA 162
+ + + L A E +H+ ++ I +L E ELF ++ PS+ K +
Sbjct: 86 CLAVPDLPTKAVLQFMAMMEQMHAKSYSSIFCTLLSTEQINELFEWIKKEPSLQKKVDIV 145
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+ Y + + DQE L V V E FY+GF +L L M+ E
Sbjct: 146 VSYYENI-----------KDQESLYMAMVASVFLESFLFYSGFFYMLYLSSQGLMINSGE 194
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-P 281
I+RDE++H + ++ +++ ++ +++ ++L E EI Y + P
Sbjct: 195 IINLIIRDEAIHGLYIGNLASKLFSTFDSEKQEKLKKQVYSLLEELMENEIEYTEKVYSP 254
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFET 338
VG Q++++ AN+ + LE + TE NP + + + K +FF T
Sbjct: 255 INLVG----EVIQFLKYNANKALQNLDLEEKYDVTENDINPMIF-NGLNTSTKNHDFFST 309
Query: 339 RVTEYQQGAELK 350
+ Y + ++
Sbjct: 310 KGNGYIKTTHVE 321
>gi|9630287|ref|NP_046714.1| hypothetical protein SPBc2p162 [Bacillus phage SPBc2]
gi|50812253|ref|NP_389886.2| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. 168]
gi|75090792|sp|O64174|BNRDF_BPSPC RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|81637506|sp|O30601|YOSP_BACSU RecName: Full=SPBc2 prophage-derived ribonucleoside-diphosphate
reductase subunit beta; AltName: Full=Ribonucleotide
reductase small subunit
gi|2522310|gb|AAB92486.1| YojQ/S [Bacillus subtilis subsp. subtilis str. 168]
gi|3025640|gb|AAC13135.1| unknown [Bacillus phage SPbeta]
gi|32468776|emb|CAB13896.2| SPbeta phage ribonucleoside-diphosphate reductase, beta subunit
[Bacillus subtilis subsp. subtilis str. 168]
Length = 329
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 67/309 (21%), Positives = 126/309 (40%), Gaps = 22/309 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L +E+ + L ++ N + +
Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
H+ + + L A E VH+ ++ I +L E E+F + + KA
Sbjct: 78 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKKART 137
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ +T+ K D+ L V V E FY+GF L K++
Sbjct: 138 IVSVYKTI---------KKNDEISLFKGMVASVFLESFLFYSGFYYPLYFYGQGKLMQSG 188
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E I+RDE++H + + +I + KE + +L E E+ Y +
Sbjct: 189 EIINLIIRDEAIHGVYVGLLAQEIYKKQTPQKQKELYAWALNLLQELYENELEYTEDVYD 248
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
+ VGL AP ++++++ AN+ + +G + F+ + NP + ++ K + +FF T+
Sbjct: 249 Q--VGL-APDVKKFIRYNANKALNNLGFDHWFEEEDVNPI--VINGLNTKTKSHDFFSTK 303
Query: 340 VTEYQQGAE 348
Y++
Sbjct: 304 GNGYKKATV 312
>gi|296316020|ref|YP_003662484.1| ribonucleotide reductase subunit 2 [Bovine herpesvirus 5]
gi|40456143|gb|AAR86121.1| UL40 ribonucleotide reductase small subunit [Bovine herpesvirus 5]
Length = 315
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 67/320 (20%), Positives = 116/320 (36%), Gaps = 36/320 (11%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
+ N W+ TE P+ DD L+ E + F ++++ LV N
Sbjct: 23 PDIDHLRSLSVANRWLETEFPLADDAKD---VARLSGAELEFYRFLFAFLSAADDLVNVN 79
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155
+ + + + Y + Q E VHS + + + + P++
Sbjct: 80 -LGNLSELFTQKDILHYYIEQESIEVVHSRVYSAIQLLLFKNDAVARAGYVEDALSDPAV 138
Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
K +W + S + +V ++ EG++F + FA I L N
Sbjct: 139 RRKVDWLERRVAAAESVAEK--------------YVLMILIEGIFFSSSFAAIAYLRTHN 184
Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
V + I RDE++H + N N + + R + EA +E +
Sbjct: 185 LFVVTCQTNDLISRDEAVHTTASCCIFN-----NYLGGERPPPDRVRKLFREAVEIEREF 239
Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKK 331
P+G L+ + Y+++ A+R I L PLF T+ P M+ +K
Sbjct: 240 IWSRAPRGSHILDVEAISAYVEYSADRLLAAIHLPPLFGTPPPGTDFPLALMT----AEK 295
Query: 332 EKNFFETRVTEYQQGAELKW 351
NFFE R T Y G +
Sbjct: 296 HTNFFERRSTTY-TGTVIND 314
>gi|257870055|ref|ZP_05649708.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2]
gi|257804219|gb|EEV33041.1| ribonucleoside-diphosphate reductase [Enterococcus gallinarum EG2]
Length = 322
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 66/333 (19%), Positives = 122/333 (36%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N + + WE W+ T +P+ +DL W++ L+D E+ +
Sbjct: 7 EAINWNAIEDIIDKSTWE---KLTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVF 60
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
G +++ + + + + + + P L F E+VH+ ++ I ++L E
Sbjct: 61 GGLTLLDTVQSESGMDQLRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKAEIDE 120
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F P + KA + + + V E FY+G
Sbjct: 121 IFEWTNTNPYLQKKAERINEIYKNGTPLEKKI---------------ASVFLETFLFYSG 165
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E P + + +
Sbjct: 166 FYTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEEEQQRLKDWMYDL 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L+E E Y E +G + ++++ AN+ +G +PLF NP
Sbjct: 226 LYELYENEERYTEELY--DAIGWT-EEVKTFLRYNANKALMNLGQDPLFPDTANDVNPIV 282
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G +K D
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGYLLGTVEAMKDD 314
>gi|188533084|ref|YP_001906881.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
tasmaniensis Et1/99]
gi|188028126|emb|CAO95983.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
tasmaniensis Et1/99]
Length = 319
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/330 (18%), Positives = 120/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W S L +E+ + R
Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWNS---LNAEEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ P + +F EAVH+ ++ I ++L +
Sbjct: 67 DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + AKA LQ+ + V E FY+GF +
Sbjct: 127 ENAPLQAKAQIILQHYYHDDALKKKI---------------ASVFLESFLFYSGFYLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I++DE++H + + + +E QQ + +L E
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKSLEKETAPRKEELQQFAIDLLLELYE 231
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+AY VG ++++ + AN+ +G + LF NP +
Sbjct: 232 NEVAYTEALYAG--VGW-QEDVKKFLHYNANKALMNLGYQALFPSYMTDVNPAILAALSP 288
Query: 328 DLKKEKNFFETRVTEYQQGAELK-----WD 352
+ + +FF + Y G ++ WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVETEDEDWD 318
>gi|291336894|gb|ADD96423.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
Length = 147
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 67/146 (45%), Positives = 99/146 (67%)
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
+L+LGR NK+ G+++Q +Y +RDESLH+NFG +IN +K + P +WTK+F++++ +
Sbjct: 1 MLLALGRQNKLPGLSDQIRYTLRDESLHINFGTYLINTLKEQYPTIWTKKFEEETIEHIK 60
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
+A LEI YAH+ +P+G +GLNA YM +I NRR IGL+ F+ NPFPW+SEV
Sbjct: 61 KAVQLEINYAHDVLPRGILGLNADMFVDYMHYIGNRRLEGIGLDYRFESDTNPFPWLSEV 120
Query: 327 IDLKKEKNFFETRVTEYQQGAELKWD 352
+D NFFE +V +YQ L+ D
Sbjct: 121 VDTGAMTNFFERKVKDYQNSGVLEDD 146
>gi|327409820|ref|YP_004347240.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus]
gi|326784994|gb|AEA07128.1| ribonucleoside-diphosphate reductase small chain [Lausannevirus]
Length = 319
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 68/311 (21%), Positives = 126/311 (40%), Gaps = 24/311 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y +HW+P EV D W+ L+ +E+ K L FFA + LV N+V
Sbjct: 20 YYQKLKKSHWIPEEVDTSKDAQDWQ---LLSKEEKSFAKLILAFFAQFDGLVVENLVRHF 76
Query: 105 YRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKAN 160
+ +S+ E + + QA E +H+ T+ +I L + + SI A+
Sbjct: 77 QQEVSSFAKEIEWFYILQAANELIHNETYMNLINVLLPPSKRAKALDAISNYASIRKIAD 136
Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
W ++ + + + EG+ F FA + +N++ G+
Sbjct: 137 WVEKWMNPAVPLP--------------ERIIAFAALEGVIFTGAFAAVYYFTISNRLKGL 182
Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
++I RDE+LH F + N + E Q++ +L A + ++
Sbjct: 183 RTANEWISRDEALHKKFAEVLYNFLVDELKVFERV-SQERCHEILTSAIEAVTDFIKYSL 241
Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
V ++A YM+ + + E ++ EN +M +I L+ + NFFE +
Sbjct: 242 RLDNVNIDADRMLGYMKRAVDDLATGLKYEKVYN-AENTLDYML-LIGLENKGNFFEGVI 299
Query: 341 TEYQQGAELKW 351
T+Y +G ++
Sbjct: 300 TDYSKGMDMGD 310
>gi|1710396|sp|P50644|RIR2_EHV4 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|515833|emb|CAA53101.1| ribonucleoside-diphosphate reductase [Equid herpesvirus 4]
Length = 320
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 65/305 (21%), Positives = 117/305 (38%), Gaps = 18/305 (5%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
L + N W+ T++P+ DDL L ER + F ++++ LV N
Sbjct: 27 PDIEHLRLLSVANRWLDTDLPISDDLKD---VAKLAPAEREFYRFLFAFLSAADDLVNLN 83
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
+ + + + Y + Q E HS + I L ++ Y
Sbjct: 84 -LGDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDATARARYVASVVKDVAI 142
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
+ + + Q K + + + + ++ ++ EG++F + FA I L N V
Sbjct: 143 DLKVSWLQA----------KVRECKSVAEKYILMILIEGVFFASSFASIAYLRTHNLFVV 192
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ I RDE++H N + N + + EA +E +
Sbjct: 193 TCQSNDLISRDEAIHTNASCCIYNNYLGGFEKPAPT----RIYALFSEAVNIECEFLLSH 248
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
PK L+ + Y+++ A+R +IGL PLF + P + + ++K NFFE R
Sbjct: 249 APKSSHLLDIEAIICYVRYSADRLLGEIGLSPLFNAPKPPPSFPLAFMTVEKHTNFFERR 308
Query: 340 VTEYQ 344
T Y
Sbjct: 309 STAYS 313
>gi|296330954|ref|ZP_06873429.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305674472|ref|YP_003866144.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
subtilis subsp. spizizenii str. W23]
gi|296151959|gb|EFG92833.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305412716|gb|ADM37835.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus
subtilis subsp. spizizenii str. W23]
Length = 329
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 65/315 (20%), Positives = 128/315 (40%), Gaps = 24/315 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L +E+ + L ++ N + +
Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
H+ + + L A E VH+ ++ I +L E E+F ++ + KA
Sbjct: 78 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQI 137
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ + + + D+ L V V E FY+GF L K++
Sbjct: 138 IVGLYKAI---------QKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E I+RDE++H + + +I + E + + +L+E E+ Y +
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELRGFAIDLLNELYENELEYTEDLYD 248
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
+ VGL+ ++++++ AN+ +G +P F+ + NP + ++ K + +FF +
Sbjct: 249 Q--VGLS-HDVKKFIRYNANKALMNLGFDPYFEEEDINPI--VLNGLNTKTKSHDFFSMK 303
Query: 340 VTEYQQGAE--LKWD 352
Y++ LK D
Sbjct: 304 GNGYKKATVEPLKDD 318
>gi|238755711|ref|ZP_04617045.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia ruckeri
ATCC 29473]
gi|238706078|gb|EEP98461.1| Ribonucleoside-diphosphate reductase subunit beta [Yersinia ruckeri
ATCC 29473]
Length = 323
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 56/324 (17%), Positives = 115/324 (35%), Gaps = 44/324 (13%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
E + +N W+P +VP+ +D+ W LT E+ + R +++
Sbjct: 25 EVWNRLTSNFWLPEKVPLSNDIPSW---AMLTAQEKQLTIRVFTGLTLLDTIQNTVGAPT 81
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
+ + P +F EAVH+ ++ I ++L + + + E ++ KA
Sbjct: 82 LLQDAITPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDDAYRWSEENTTLQKKAQI 141
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
L + V E FY+GF + K+ A
Sbjct: 142 ILNHYHHDDPLKKKI---------------ASVFLESFLFYSGFYLPMYFSSRAKLTNTA 186
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I+RDE++H + + + + +E + + +L + E+ Y E
Sbjct: 187 DLIRLIIRDEAVHGYYIGYKFQKGLEKVDAVRRQEIKNFTFELLQDLYDNEVRYTEELYD 246
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-----------NPFPWMSEVIDLK 330
VG + ++++ + AN+ +G E LF E +P +
Sbjct: 247 G--VGWS-EDVKKFLHYNANKALMNLGYEALFPANEVTVSAAILSALSP--------NAD 295
Query: 331 KEKNFFETRVTEYQ--QGAELKWD 352
+ +FF + Y + + D
Sbjct: 296 ENHDFFSGSGSSYVIGKAVNTEDD 319
>gi|125745092|ref|YP_001033969.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 2]
gi|327488446|sp|Q77MS0|RIR2_GAHVM RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|7673151|gb|AAF66775.1|AF147806_39 ribonucleotide reductase small subunit [Gallid herpesvirus 2]
gi|10180745|gb|AAG14233.1|AF243438_48 UL40 ribonucleotide reductase small subunit-like protein [Gallid
herpesvirus 2]
gi|104304005|gb|ABF72280.1| HSV-1 UL40-like protein [Gallid herpesvirus 2]
gi|148806369|gb|ABR13125.1| UL40 [Gallid herpesvirus 2]
gi|194346388|gb|ACF49570.1| UL40 [synthetic construct]
gi|194750382|gb|ACF94859.1| UL40 [Gallid herpesvirus 2]
gi|237626230|gb|ACR02753.1| UL40 [synthetic construct]
gi|237626404|gb|ACR02926.1| UL40 [synthetic construct]
Length = 343
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 63/316 (19%), Positives = 121/316 (38%), Gaps = 28/316 (8%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
+ N W TE + DDL + LT++ER + F ++++ LV N
Sbjct: 51 PDIGHLRALSIMNRWTETEFVISDDLRD---VSMLTEEERYFYRFLFTFLSAADDLVNLN 107
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155
+ + S + Y Q EAVHS + + + L E P+I
Sbjct: 108 -IDNLLGLFSQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAI 166
Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
+K +W + + + + + ++ ++ EG++F FA I L N
Sbjct: 167 QSKLDWLNK--------------RVIECSSIAEKYILMILIEGIFFSASFAAIAYLRINN 212
Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
V + I RDE++H+ + N + K + + + EA +E A+
Sbjct: 213 LFVVTCQINNLISRDEAIHVEASCCIFK-----NYLMGPKPSIGRVQELFKEAVQIECAF 267
Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
P+ L+ + Y+++ A+R ++ + P++ + + ++ NF
Sbjct: 268 LRTAAPRNSQLLDVEAICSYVRYSADRLLKELDMPPIYNEPKPTADFPLALMTASNNTNF 327
Query: 336 FETRVTEYQQGAELKW 351
FE R T Y G+
Sbjct: 328 FERRNTAYS-GSVSND 342
>gi|51557509|ref|YP_068343.1| ribonucleotide reductase subunit 2 [Suid herpesvirus 1]
gi|1710400|sp|P50645|RIR2_SUHVK RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|437737|emb|CAA50977.1| ribonucleotide reductase [Suid herpesvirus 1]
gi|525265|emb|CAA56776.1| ribonucleotid reductase, small subunit [Suid herpesvirus 1]
gi|40253968|tpg|DAA02163.1| TPA_exp: small subunit of ribonucleotide reductase [Suid
herpesvirus 1]
gi|1090510|prf||2019240B ribonucleotide reductase:SUBUNIT=small
Length = 303
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 63/316 (19%), Positives = 122/316 (38%), Gaps = 27/316 (8%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
+ N W+ T++P+ DD L++ E + F ++++ LV N
Sbjct: 10 PDMDHLRSLSVANRWLETDLPLGDDAKD---VAALSEPELEFYRFLFAFLSAADDLVNVN 66
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE----GELFNMYREVPSI 155
+ ++ + + Y + Q E VHS + I L + +I
Sbjct: 67 -LGSLSELFTQKDILHYYIEQECIEVVHSRVYSAIQLMLFRGDAAARERYVRAALRDEAI 125
Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
K W ++ A+ + + ++ ++ EG++F + FA I L N
Sbjct: 126 RRKVEW--------------LDSRVAECASVAEKYLLMILIEGIFFASSFASISYLRTHN 171
Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
V + +I RDE++H + + N + P + + + + EA +E +
Sbjct: 172 LFVVTCQSNDFISRDEAIHTSASCCIYNNYLGDAP----RPDEARIHQLFAEAVEIECEF 227
Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
P+ + L+ P+ Y+++ A+R IG PLF + ++ +K NF
Sbjct: 228 LRARAPRDSLLLDLPAIISYVRYSADRLLQAIGASPLFGAPAPAADFPMALMVAEKHTNF 287
Query: 336 FETRVTEYQQGAELKW 351
FE R T Y G +
Sbjct: 288 FERRSTNY-TGTVVND 302
>gi|9629745|ref|NP_045237.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 4]
gi|2605963|gb|AAC59535.1| 20 [Equid herpesvirus 4]
Length = 320
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 65/305 (21%), Positives = 117/305 (38%), Gaps = 18/305 (5%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
L + N W+ T++P+ DDL L ER + F ++++ LV N
Sbjct: 27 PDIEHLRLLSVANRWLDTDLPISDDLKD---VAKLAPAEREFYRFLFAFLSAADDLVNLN 83
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
+ + + + Y + Q E HS + I L ++ Y
Sbjct: 84 -LGDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDATARARYVASVVKDVAI 142
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
+ + + Q K + + + + ++ ++ EG++F + FA I L N V
Sbjct: 143 DLKVSWLQA----------KVRECKSVAEKYILMILIEGVFFASSFASIAYLRTHNLFVV 192
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ I RDE++H N + N + + EA +E +
Sbjct: 193 TCQSNDLISRDEAIHTNASCCIYNNYLGGFEKPAPT----RIYALFSEAVNIECEFLLSH 248
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
PK L+ + Y+++ A+R +IGL PLF + P + + ++K NFFE R
Sbjct: 249 APKSTHLLDIEAIICYVRYSADRLLGEIGLSPLFNAPKPPPSFPLAFMTVEKHTNFFERR 308
Query: 340 VTEYQ 344
T Y
Sbjct: 309 STAYS 313
>gi|315641368|ref|ZP_07896443.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
italicus DSM 15952]
gi|315482861|gb|EFU73382.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
italicus DSM 15952]
Length = 321
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 67/327 (20%), Positives = 122/327 (37%), Gaps = 30/327 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L++ E+ ++
Sbjct: 7 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSEPEKQLVGHVF 60
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G ++L + + + + + P L F E+VH+ ++ I ++L + E
Sbjct: 61 GGLTLLDTLQSESGIDQLRKDARTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 120
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F P + AKA + + + V E FY+G
Sbjct: 121 IFEWTNTNPYLQAKAEKINEIYKHGTPLQKKI---------------ASVFLETFLFYSG 165
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + P E + +
Sbjct: 166 FYTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFQALPEAEQAELKDWMYGL 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L E E Y E G +G A + ++++ AN+ +G +PLF NP
Sbjct: 226 LFELYENEENYTDELY--GEIGW-AEEVKTFLRYNANKALMNMGQDPLFPDSANDVNPIV 282
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE 348
M+ + +FF Y G+
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGYLLGSV 308
>gi|50313261|ref|YP_053065.1| ribonucleotide reductase subunit 2 [Equid herpesvirus 1]
gi|132625|sp|P28847|RIR2_EHV1B RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|42795147|gb|AAS45904.1| small subunit of ribonucleotide reductase [Equid herpesvirus 1]
gi|49617004|gb|AAT67277.1| ribonucleotide reductase RR2 [Equid herpesvirus 1]
Length = 321
Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats.
Identities = 66/313 (21%), Positives = 118/313 (37%), Gaps = 34/313 (10%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
+ N W+ T++P+ DDL LT ER + F ++++ LV N
Sbjct: 28 PDIEHLRSLSVANRWLDTDLPISDDLKD---VAKLTPAEREFYRFLFAFLSAADDLVNLN 84
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG----ELFNMYREVPSI 155
+ + + + Y + Q E HS + I L ++ +I
Sbjct: 85 -LGDLSALFTQKDILHYYIEQESIEVTHSRVYSAIQLMLFGNDAAARARYVASIIGDAAI 143
Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
K W K + + + ++ ++ EG++F + FA I L N
Sbjct: 144 GRKVAW--------------LQAKVRECGSVAEKYILMILIEGLFFASSFASIAYLRTHN 189
Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
V + I RDE++H + N + K ++ + EA +E +
Sbjct: 190 LFVVTCQSNDLISRDEAIHTRASCCIYNNYL----GGFEKPEPKRIYELFSEAVNIECEF 245
Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKK 331
P+ L+ + Y+++ A+R +IGL PLF + P +M+ ++K
Sbjct: 246 LLSHAPQYSHLLDIGAIISYVRYSADRLLGEIGLSPLFNAPKPSPSFPLAFMT----VEK 301
Query: 332 EKNFFETRVTEYQ 344
NFFE R T Y
Sbjct: 302 HTNFFERRSTAYS 314
>gi|16078802|ref|NP_389621.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. 168]
gi|221309618|ref|ZP_03591465.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. 168]
gi|221313941|ref|ZP_03595746.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. NCIB 3610]
gi|221318864|ref|ZP_03600158.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. JH642]
gi|221323136|ref|ZP_03604430.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. SMY]
gi|321315508|ref|YP_004207795.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis BSn5]
gi|1710395|sp|P50621|RIR2_BACSU RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|1154633|emb|CAA92811.1| NrdF [Bacillus subtilis subsp. subtilis str. 168]
gi|2634123|emb|CAB13623.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
subtilis subsp. subtilis str. 168]
gi|116733911|gb|ABK20014.1| ribonucleotide-diphosphate reductase beta [synthetic construct]
gi|291484287|dbj|BAI85362.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. natto BEST195]
gi|320021782|gb|ADV96768.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis BSn5]
Length = 329
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 64/315 (20%), Positives = 129/315 (40%), Gaps = 24/315 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L +E+ + L ++ N + +
Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
H+ + + L A E VH+ ++ I +L E E+F ++ + KA
Sbjct: 78 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQM 137
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ + + + D+ L V V E FY+GF L K++
Sbjct: 138 IVGLYKAI---------QKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E I+RDE++H + + +I + E ++ + +L++ E+ Y +
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYD 248
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
+ VGL+ ++++++ AN+ +G +P F+ + NP + ++ K + +FF +
Sbjct: 249 Q--VGLS-HDVKKFIRYNANKALMNLGFDPYFEEEDINPI--VLNGLNTKTKSHDFFSMK 303
Query: 340 VTEYQQGAE--LKWD 352
Y++ LK D
Sbjct: 304 GNGYKKATVEPLKDD 318
>gi|299537049|ref|ZP_07050352.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
fusiformis ZC1]
gi|298727290|gb|EFI67862.1| ribonucleoside-diphosphate reductase subunit beta [Lysinibacillus
fusiformis ZC1]
Length = 322
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/305 (20%), Positives = 117/305 (38%), Gaps = 21/305 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W P E+ + D+ WKS + + K+ +++ N + +
Sbjct: 22 FWDQQWKQIWFPEEIAVSKDIKQWKSF-----EHQDTYKKVFAGLTLLDTVQTNIGMNRV 76
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
+ + + + L EA+H+ ++ YI T+L +E ELF ++ + KAN
Sbjct: 77 AAYTDDLQEKAVLTVFDAFEAIHAKSYSYIFTTLCTNEEIDELFEWVKKNEFLQYKANKI 136
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
++ ++ + E L V+ E FY+GF L LG + AE
Sbjct: 137 ADIYNSI---------EEGNPESLWKAMFSSVMLESFLFYSGFFYPLYLGGQGFLRNSAE 187
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H + + +E +L + E+ Y +
Sbjct: 188 IISLILRDESIHGVAVGFFAQNLFKQFSKEKQEELHLWGYELLLDLYQNEMKYTDDIY-- 245
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
GL+ Y+++ AN+ +G E +F E NP M+ + + +FF +
Sbjct: 246 AETGLSPE-VRAYVRYNANKALMNVGFEAMFPEEEVNPIV-MNGIRNEGSTYDFFSQKGA 303
Query: 342 EYQQG 346
Y +
Sbjct: 304 TYAKA 308
>gi|292489180|ref|YP_003532067.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia
amylovora CFBP1430]
gi|292900297|ref|YP_003539666.1| ribonucleoside-diphosphate reductase 2 subunit beta [Erwinia
amylovora ATCC 49946]
gi|291200145|emb|CBJ47271.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
amylovora ATCC 49946]
gi|291554614|emb|CBA22274.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
amylovora CFBP1430]
Length = 319
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 63/330 (19%), Positives = 119/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W S L+ DE+ + R
Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWNS---LSADEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ P + +F EAVH+ ++ I ++L +
Sbjct: 67 DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + AKA LQ+ V E FY+GF +
Sbjct: 127 DNAPLQAKAQIILQHYYHNDPLKKKI---------------ASVFLESFLFYSGFYLPVY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I++DE++H + + + +E QQ + +L E
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPQRKEELQQFAIELLLELYE 231
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+AY VG ++++ + AN+ +G E LF NP +
Sbjct: 232 NELAYTDALYSG--VGW-QEDVKKFLHYNANKALMNLGYEALFPAEMTDVNPAILAALSP 288
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTEDEDWD 318
>gi|166367085|ref|YP_001659358.1| ribonucleoside-diphosphate reductase beta chain [Microcystis
aeruginosa NIES-843]
gi|166089458|dbj|BAG04166.1| ribonucleoside-diphosphate reductase beta chain [Microcystis
aeruginosa NIES-843]
Length = 283
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 74/293 (25%), Positives = 127/293 (43%), Gaps = 24/293 (8%)
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
LTD+ER L + +S+ NI + ++ PE + Q +EA+H+
Sbjct: 3 EYGHLTDEERYAYDGILSYLTFLDSVQTCNIP-HLKGSVTAPEISLCMAEQISQEAMHNQ 61
Query: 130 TFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
++QY+I ++ E E+++ +R + + + Q K + +
Sbjct: 62 SYQYLIETIIPSERRGEVYDFWRTDKVLKDRCQFIASLYQQYID-------KQTTESYFI 114
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
L Y++ E ++FY GF +L M G A+ ++ I RDE H+ +I +
Sbjct: 115 ALVADYLL-ESLYFYNGFIFFYNLASRQLMSGSADVFKMINRDELSHVRLYQKLIPEAMA 173
Query: 248 ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
H ++ M A E + + + +G+ S EQY +++AN R I
Sbjct: 174 TFSH-----SVEQIYEMFDTAVKHECRWTNHIVGNDILGITEYSTEQYTKYLANIRLKAI 228
Query: 308 GLEPLF---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
GLEPL+ KY ++P+ + D KK + NFFE VT Y + L WD
Sbjct: 229 GLEPLYREEKYNKSPYNHLERFSDTKKEGHTKANFFEATVTSYVMSSGLTGWD 281
>gi|41387638|gb|AAS01682.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2]
Length = 343
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 63/316 (19%), Positives = 120/316 (37%), Gaps = 28/316 (8%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
+ N W TE + DDL + LT++ER + F ++++ LV N
Sbjct: 51 PDIGHLRALSIMNRWTETEFVISDDLRD---VSMLTEEERYFYRFLFTFLSAADDLVNLN 107
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155
+ + S + Y Q EAVHS + + + L E P+I
Sbjct: 108 -IDNLLGLFSQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSLARAEYVKTSLNSPAI 166
Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
+K +W + + + + + ++ ++ EG++F FA I L N
Sbjct: 167 QSKLDWLNK--------------RVIECSSIAEKYILMILIEGIFFSASFAAIAYLRINN 212
Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
V + I RDE++H+ + N + K + + + EA +E A+
Sbjct: 213 LFVVTCQINNLISRDEAIHVEASCCIFK-----NYLMGPKPSIGRVQELFKEAVQIECAF 267
Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNF 335
P L+ + Y+++ A+R ++ + P++ + + ++ NF
Sbjct: 268 LRTAAPHNSQLLDVEAICSYVRYSADRLLKELDMPPIYNEPKPTADFPLALMTASNNTNF 327
Query: 336 FETRVTEYQQGAELKW 351
FE R T Y G+
Sbjct: 328 FERRNTAYS-GSVSND 342
>gi|94985875|ref|YP_605239.1| ribonucleotide-diphosphate reductase subunit beta [Deinococcus
geothermalis DSM 11300]
gi|94556156|gb|ABF46070.1| Ribonucleoside-diphosphate reductase [Deinococcus geothermalis DSM
11300]
Length = 319
Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 61/305 (20%), Positives = 106/305 (34%), Gaps = 25/305 (8%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y+ W E+P+ D A W+ L+ ER R + ++L + +
Sbjct: 19 FYIQQQAQLWFSEEIPIASDAADWR---ALSPAERTCYTRVSAGLNAMDTLQGEVGMPLL 75
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
+ + + L AF E VH+ ++ + +E E F P + K
Sbjct: 76 AAGEDDHQRKATLAMFAFMENVHARSYSMANKTFLSASEEREAFEWIEMQPHLQRKITVF 135
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+ + + + + + E FY+GF L L KM + E
Sbjct: 136 RRLYEEGDALT---------------RMLASCLLETALFYSGFFYPLYLAGQGKMSHMGE 180
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
+ I DE+LH ++ + + P + + + E E AY E
Sbjct: 181 VFTLICADEALHGSYVGLLFQERFAALPQGEQAAVRARFEQLAREFYENECAYTDEVY-- 238
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETR-V 340
VGL A + ++++ N C +GLE LF E NP +FF +
Sbjct: 239 AEVGL-ASEVKTFVRYNFNICCDNLGLERLFPEEEVNPLVLNGIRATGGTTHDFFSIKGA 297
Query: 341 TEYQQ 345
Y +
Sbjct: 298 GGYAK 302
>gi|154686152|ref|YP_001421313.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
amyloliquefaciens FZB42]
gi|154352003|gb|ABS74082.1| NrdF [Bacillus amyloliquefaciens FZB42]
Length = 329
Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 61/309 (19%), Positives = 126/309 (40%), Gaps = 22/309 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L +E+ + L ++ N + +
Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
H+ + + L A E VH+ ++ I +L E E+F ++ + KA
Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQM 137
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ + + + D+ L V V E FY+GF L K++
Sbjct: 138 IVGLYKAI---------QKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSG 188
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E I+RDE++H + + +I + E ++ + +L++ E+ Y +
Sbjct: 189 EIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENELEYTEDLYD 248
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETR 339
+ VGL+ ++++++ AN+ +G +P F+ + NP + ++ K + +FF +
Sbjct: 249 Q--VGLS-HDVKKFIRYNANKALMNLGFDPYFEEEDINPI--VLNGLNTKTKSHDFFSMK 303
Query: 340 VTEYQQGAE 348
Y++
Sbjct: 304 GNGYKKATV 312
>gi|304398691|ref|ZP_07380563.1| Ribonucleoside-diphosphate reductase [Pantoea sp. aB]
gi|304353902|gb|EFM18277.1| Ribonucleoside-diphosphate reductase [Pantoea sp. aB]
Length = 326
Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats.
Identities = 60/323 (18%), Positives = 115/323 (35%), Gaps = 26/323 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +DL W++ L ++ + R
Sbjct: 17 NWNRIQDEKDLEVWNRLTSNFWLPEKVPLSNDLPAWQT---LDKQQQQLTIRVFTGLTLL 73
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + P L +F EAVH+ ++ I ++L + +
Sbjct: 74 DTIQNVIGAPGLMDDAITPHEEAVLSNISFMEAVHARSYSSIFSTLCNTQDVDAAYQWSE 133
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E + KA L++ + V E FY+GF +
Sbjct: 134 ENVPLQNKARIILEHYRANDPLKKKI---------------ASVFLESFLFYSGFWLPMY 178
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + Q L +E QQ + +L
Sbjct: 179 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQQALATADDLRREELQQFAYDLLLALYE 238
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+AY VG + ++ + AN+ +G E LF NP +
Sbjct: 239 NEVAYTEALYAD--VGW-VEEVKTFLHYNANKALMNLGYEALFPAELTAVNPAILSALSP 295
Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 296 NADENHDFFSGSGSSYVMGKAVE 318
>gi|297745764|emb|CBI15820.3| unnamed protein product [Vitis vinifera]
Length = 269
Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 9/166 (5%)
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ + + EG++F F I L + M G+ + I R E LH +F + +
Sbjct: 97 LFAERLIAFACVEGIFFSGSFCAIFWLKKKGLMPGLTFSNELISRYEGLHCDFACLLYSL 156
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
++ + P QK ++HEA +E + E +P +G+ A Y++F+ +R
Sbjct: 157 LQKQLPW-------QKVHHIVHEAMEIETQFICEALPCALIGMKATLMSHYIKFVVDRLL 209
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+G E + ENPF WM E I L+ NFF+ R+ +YQ+ + +
Sbjct: 210 VALGYERKYNV-ENPFDWM-EFIFLQGNANFFQRRMGDYQKASIMS 253
>gi|282599256|ref|YP_003358568.1| NrdB ribonucleotide reductase subunit beta [Shigella phage
phiSboM-AG3]
gi|226973562|gb|ACO94315.1| NrdB ribonucleotide reductase subunit beta [Shigella phage
phiSboM-AG3]
Length = 367
Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats.
Identities = 70/303 (23%), Positives = 122/303 (40%), Gaps = 18/303 (5%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
+ + Y + W P EV + D A + + LT E+ + + NL +S+
Sbjct: 37 PFVQKWYEKGLSQFWRPEEVDITKDKADYAT---LTPAEKRIYESNLKRQTMLDSIQGAA 93
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
A S PE + +L +EA+HS ++ +I+ + D G +F+ +V I A
Sbjct: 94 PFEAFGPWASTPEMQFAVLEWTRQEAIHSLSYTHILRNTVNDPGIVFDHVLDVAEIVDCA 153
Query: 160 NWALQYTQTLSSPS---------FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + + S +A + F + LF EG+ FY FA +
Sbjct: 154 HQISTHYDDMVRYSGMRMAGRAFTREDIMNAKRAFWRALFAAN-TLEGIRFYVSFACSWA 212
Query: 211 LGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL--WTKEFQQKSRTMLHE 267
+ KM G A+ + I RDE HL ++N++ +P +E + + M +
Sbjct: 213 FTQFQKKMEGNAKIIRQIARDEQDHLILTQTLLNRLPGMDPDFEIIREELRGEMTQMFLD 272
Query: 268 ATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSE 325
E +A G +GLNA + ++ R IG P E P PW++E
Sbjct: 273 VGNQEKQWADYLFQDGSMLGLNAKILHHMVDWLLTHRMGAIGHPYPGEPRKECPVPWINE 332
Query: 326 VID 328
++
Sbjct: 333 WLN 335
>gi|327440528|dbj|BAK16893.1| ribonucleotide reductase, beta subunit [Solibacillus silvestris
StLB046]
Length = 320
Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats.
Identities = 65/305 (21%), Positives = 118/305 (38%), Gaps = 21/305 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W P E+ + D+ WK + + K+ G +++ N + I
Sbjct: 22 FWDQQWKQIWFPEEIAVSKDVKQWKEF-----EHQDTYKKVFGGLTLLDTVQTNIGMNEI 76
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
++ + + + L EA+H+ ++ YI T+L + E+F ++ + KAN
Sbjct: 77 AKYTPDFQEKAVLTVFGSFEAIHAKSYSYIFTTLCTNTEIDEVFEWVQKNEFLQYKANRI 136
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+ T K+ D E L V+ E FY+GF L LG + AE
Sbjct: 137 GEVY---------TAIKEDDPESLWKAMFASVMLESFLFYSGFFYPLYLGGQGVLRNSAE 187
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDES+H I +E L + E+ Y +
Sbjct: 188 VISLILRDESIHGVAVGFFAQNIFKTFTEEKQQELTLWGYEYLLDLYQNEMKYTDDLY-- 245
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
GL+ ++Y+++ AN+ +GL+ +F E NP M+ + + +FF + +
Sbjct: 246 AETGLSPE-VKKYVRYNANKALMNLGLDTMFPDEEVNPVV-MNGISNTGSTYDFFSQKGS 303
Query: 342 EYQQG 346
Y
Sbjct: 304 TYAVA 308
>gi|328912184|gb|AEB63780.1| ribonucleoside-diphosphate reductase (minor subunit) [Bacillus
amyloliquefaciens LL3]
Length = 305
Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats.
Identities = 64/308 (20%), Positives = 122/308 (39%), Gaps = 20/308 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L E+ + L ++ N + +
Sbjct: 2 FYNQNVKQFWLPEEIALNGDLLTWK---YLGTKEQDTYMKVLAGLTLLDTEQGNTGMPIV 58
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
H+ + + L A E VH+ ++ I +L E E+F ++ + KA+
Sbjct: 59 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKQNKYLQKKAHT 118
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ + + K D+ L V V E FY+GF L K++
Sbjct: 119 VVGLYRAI---------KKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMNSG 169
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E I+RDE+LH + + +I + + KE + + +L + E+ Y +
Sbjct: 170 EIVNLIIRDEALHGVYTGLLAQEIYSKQTEIKKKELYKWTIDLLLDLYENELDYTTDLY- 228
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRV 340
VGL ++++++ AN+ + +G + F E NP ++ + K +FF +
Sbjct: 229 -DPVGLT-HDVKKFIRYNANKALNNLGFDHYFHEEEINPVV-LNGLSTKTKSMDFFSQKG 285
Query: 341 TEYQQGAE 348
Y++
Sbjct: 286 NSYRKATA 293
>gi|217071966|gb|ACJ84343.1| unknown [Medicago truncatula]
Length = 206
Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 7 LSPIQAGEK---RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+ ++ G R ++ +L ++ + P++Y WE Y A + W EV +
Sbjct: 1 MGSLENGTPKKIREEETEEPILMKQTQRFCMFPVRYKQLWEMYKKAEASFWTAEEVDLSY 60
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D+ W + L+D E+ I L FFA+S+ +V N+ + PE R + Q
Sbjct: 61 DVQHWAT---LSDSEKHFISHVLAFFATSDGIVLENLAARFLNDVQIPEARAFYGFQIAI 117
Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQT 168
E +HS + ++ + D E LFN +P + KA WAL + +
Sbjct: 118 ENIHSEMYSLLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWINS 165
>gi|270339459|ref|YP_003331539.1| ribonucleotide reductase subunit 2 [Felid herpesvirus 1]
gi|254940175|gb|ACT88318.1| ribonucleotide reductase subunit 2 [Felid herpesvirus 1]
Length = 331
Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats.
Identities = 64/310 (20%), Positives = 117/310 (37%), Gaps = 35/310 (11%)
Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
N W+ T++P+ DD+ L++ E + F ++++ LV N + + +
Sbjct: 48 IANRWLETDLPIGDDIKD---VTTLSESELDFYRFLFTFLSAADDLVNLN-LGNLSELFT 103
Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMYREVPSITAKANWALQY 165
+ Y + Q E VHS + I L + E + P + K W
Sbjct: 104 QKDILHYYIEQECIEVVHSRVYSAIQLLLFKCDAEARTAYVDSMITKPELARKVEW---- 159
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
T+ + E + + ++ ++ EG++F FA I L N + +
Sbjct: 160 ----------LRTRIGECESIAEKYILMILIEGIFFVASFAAIAYLRTHNIFIVTCQTND 209
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I RDE++H + N K ++ ++ EA LE + P+
Sbjct: 210 LISRDEAIHTTASCCIYNNYL----PAQIKPSTERIHSLFREAVELECEFISTCAPRCSN 265
Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNFFETRVT 341
LN Y+++ A+R I + P+F + P +M ++K NFFE T
Sbjct: 266 LLNVADICNYVRYSADRLLGIIKVAPIFNVPPPHPDFPLAFMV----IEKHTNFFERHST 321
Query: 342 EYQQGAELKW 351
Y G +
Sbjct: 322 TYS-GTVIND 330
>gi|307107666|gb|EFN55908.1| hypothetical protein CHLNCDRAFT_57791 [Chlorella variabilis]
Length = 849
Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats.
Identities = 61/330 (18%), Positives = 116/330 (35%), Gaps = 69/330 (20%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP-----------------------TE 58
K +L+ D + PLK W +Y A + P +
Sbjct: 557 KPLLDENPDRYCMFPLKEDRVWSQYKKAEAS--RPSGQAPNDPLCMAHTTFWTTFWTAED 614
Query: 59 VPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLL 118
V D W+ + L ER + L + A+S+ L+ +N+V + E R +
Sbjct: 615 VDFSSDARDWQ--DRLAPGERSFLSSVLAYLAASDRLIQHNVVARFMIDVELAEARAFYA 672
Query: 119 RQAFEEAVHSHTFQYIITSLGLDEGE----LFNMYREVPSITAKANWALQYTQTLSSPSF 174
Q F++ VH+ I+ +L + E + +P+ AKA W ++ ++ +
Sbjct: 673 FQLFKKNVHTEMVSAILAALFAGKEEQLAAVLRTVLALPAFQAKAAWVRKWINRQATAAA 732
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
+ L I RDE +H
Sbjct: 733 ALPPLLLPRGLLPG-------------------------------TGHATDLISRDEGVH 761
Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
+ + + ++ + ++ ++ EA E A+ +P GL A + E+
Sbjct: 762 VESAGVMYSLLRSKLTDSQ-------AQGIVGEAVEAERAFVCGQLPLEATGLEAGAMEE 814
Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
Y+Q++ +R +G PL++ NP PW+
Sbjct: 815 YLQYVGDRLLGALGHAPLYRVAANPLPWLE 844
>gi|51247866|pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
gi|51247867|pdb|1UZR|B Chain B, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
gi|51247868|pdb|1UZR|C Chain C, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
Length = 296
Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats.
Identities = 60/295 (20%), Positives = 112/295 (37%), Gaps = 29/295 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 15 NWNRLQDEKDAEVWD---RLTGNFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ +++ P L AF E+VH+ ++ I ++L + F
Sbjct: 69 TMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFR 128
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA LQ + V + E FY+GF
Sbjct: 129 WSEENRNLQRKAEIVLQSYRGDE---------------PLKRKVASTLLESFLFYSGFYL 173
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + E + + +L E
Sbjct: 174 PMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFE 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
E+ Y + VGL ++++++ AN+ +G E LF E NP
Sbjct: 234 LYDNEVEYTQDLY--DEVGLT-EDVKKFLRYNANKALMNLGYEALFPRDETDVNP 285
>gi|3183695|emb|CAA07027.1| ribonucleotide reductase small subunit [Felid herpesvirus 1]
Length = 331
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 64/310 (20%), Positives = 116/310 (37%), Gaps = 35/310 (11%)
Query: 50 CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
N W+ T++P+ DD+ L++ E + F ++++ LV N + + +
Sbjct: 48 IANRWLETDLPIGDDIKD---ITTLSESELDFYRFLFTFLSAADDLVNLN-LGNLSELFT 103
Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE----LFNMYREVPSITAKANWALQY 165
+ Y + Q E VHS + I L + E + P + K W
Sbjct: 104 QKDILHYYIEQECIEVVHSRVYSAIQLLLFKCDAEARTAYVDSMITKPELARKVEW---- 159
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
T+ + E + + ++ ++ EG++F FA I L N + +
Sbjct: 160 ----------LRTRIGECESIAEKYILMILIEGIFFVASFAAIAYLRTHNIFIVTCQTND 209
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I RDE++H + N K ++ ++ EA LE + P+
Sbjct: 210 LISRDEAIHTTASCCIYNNYL----PAQIKPSTERIHSLFREAVELECEFISTCAPRCSN 265
Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFETRVT 341
LN Y+++ A+R I + P+F P +M ++K NFFE T
Sbjct: 266 LLNVADICNYVRYSADRLLGIIKVAPIFNVPPPHPNFPLAFMV----IEKHTNFFEKHST 321
Query: 342 EYQQGAELKW 351
Y G +
Sbjct: 322 TYS-GTVIND 330
>gi|326804582|ref|YP_004327453.1| Ribonucleotide-diphosphate reductase beta subunit [Salmonella phage
Vi01]
gi|301795232|emb|CBW37950.1| Ribonucleotide-diphosphate reductase beta subunit [Salmonella phage
Vi01]
Length = 367
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 73/305 (23%), Positives = 126/305 (41%), Gaps = 22/305 (7%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
+ + Y + W P EV + D A + + L+ E+ + NL +S+
Sbjct: 37 PFVQKWYEKGLSQFWRPEEVDVTKDKADFAT---LSAAEQHIYFSNLKRQTMLDSIQGAA 93
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
A S PE + +L +EA+HS ++ +I+ + D G +F+ +V I A
Sbjct: 94 PFEAFGPWASTPEAQFAILEWTRQEAIHSLSYTHILRNTVNDPGIVFDHVLDVQEIVDCA 153
Query: 160 NWALQYTQTLSSPS---------FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
Y + S +A + F + LF + EG+ FY FA +
Sbjct: 154 GQISVYYDDMVRYSGMRMAGRAFTREDIMNAKRAFWRALFAANSL-EGVRFYVSFACSWA 212
Query: 211 LGRA-NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL--WTKEFQQKSRTMLHE 267
+ NKM G A+ + I RDE HL +N++ + +P +E + + M +
Sbjct: 213 FMQFLNKMEGNAKIIRQIARDEQDHLILTQTFLNRLPLLDPDFGIIREELRGEMTQMYVD 272
Query: 268 ATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWM 323
E +A+ G +GLNA Q + ++A R IG + +NP PW+
Sbjct: 273 VVNQEKEWANYLFKDGSMLGLNANILHQMVDWLATHRMGAIGHP--YPGQARKDNPVPWI 330
Query: 324 SEVID 328
+E +D
Sbjct: 331 NEWLD 335
>gi|254362523|ref|ZP_04978626.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
haemolytica PHL213]
gi|153094123|gb|EDN75022.1| ribonucleoside-diphosphate reductase beta subunit [Mannheimia
haemolytica PHL213]
Length = 293
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 19/296 (6%)
Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
+ TE D+ +++ + D ER ++ R + + E V + PE
Sbjct: 1 LHTEFNFTGDIQDYRTT--INDHERHVLTRAMLAISQVEVNVKRFWGELYC-YFPKPEMD 57
Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
A E H + +++ LGL+ E+F+ E+ + + + + +
Sbjct: 58 DVGGTFAESEVRHKDAYSFLLEKLGLN--EMFSQIHEIEPLMNRIRYMESFMKD------ 109
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGIAEQYQYIMRDESL 233
EF+ L +F + E + + F ++S + N GI+ + ++E +
Sbjct: 110 ---KDAGKGEFVLSLVLFSLFVEHISLFGQFIIMMSFNKHKNLFKGISNAVEATSKEEEI 166
Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG-LNAPSC 292
H FGI + ++ E+ L+T EF + +T+ ++A E +G + + +
Sbjct: 167 HGKFGIALYEILRDEHSELFTPEFFEDLQTLANQAFEAERGILDWIFEEGDLSFITKATV 226
Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEYQQ 345
E Y++ N +GLEP W I KE +FF R T+Y +
Sbjct: 227 ENYIKNRYNNSLSILGLEPPHDIDPELLKETEWFDIEILSTKETDFFNKRSTDYSK 282
>gi|326800312|ref|YP_004318131.1| ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
gi|326551076|gb|ADZ79461.1| Ribonucleoside-diphosphate reductase [Sphingobacterium sp. 21]
Length = 327
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 71/310 (22%), Positives = 132/310 (42%), Gaps = 21/310 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ TE D+ +WK LT + + K+ LG ++L ++ + I
Sbjct: 20 FWEQNIRQFWIDTEYIPSKDIDVWK---KLTPEMQETYKKALGGLTLLDTLQSHTGMPKI 76
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
H+ + + L EA+H+ ++ I T++ ELF ++ + KA
Sbjct: 77 LDHIDGLQSKAVLSYMCMMEAIHAKSYSTIFTTVASTPEINELFEWVQDNKYLQFKAATI 136
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
QY ++L + V+ E FY+GF L L +MV A+
Sbjct: 137 DQYYRSLDKKKVSNEEL-------YMSLAASVLLESFLFYSGFFIPLWLAGQGQMVASAD 189
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
+ I+ DES+H F + I + + +E ++K +L E+ Y E
Sbjct: 190 IIKKIVADESIHGVFVGLLAQDIFRKLSNQ--EEVKKKVVDLLMLLYENELKYTEEIYTD 247
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETRV 340
VGL A ++Y+++ AN+ +G E LF+ E NP + ++L+ + +FF +
Sbjct: 248 --VGLTAE-VKEYVRYNANKALMNLGFEELFEVKEVNPI--VLNGLNLETTQHDFFSKKS 302
Query: 341 TEYQQGAELK 350
T Y++ ++
Sbjct: 303 TNYEKATQIS 312
>gi|319938784|ref|ZP_08013148.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus
1_2_62CV]
gi|319811834|gb|EFW08100.1| ribonucleoside-diphosphate reductase [Streptococcus anginosus
1_2_62CV]
Length = 319
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 63/303 (20%), Positives = 115/303 (37%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + + V AI
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSPEEKDLVGKVFGGLTLLDTMQSQSGVEAIR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ P L F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 GDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFEWTNTNPYLQKKAEIIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ ++ V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGNALEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + F++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQETFREWMYDLLYTLYENEEGYTETLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF T NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDTADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|227537625|ref|ZP_03967674.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum
ATCC 33300]
gi|300771015|ref|ZP_07080892.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobacterium
spiritivorum ATCC 33861]
gi|227242511|gb|EEI92526.1| ribonucleoside-diphosphate reductase [Sphingobacterium spiritivorum
ATCC 33300]
gi|300762288|gb|EFK59107.1| ribonucleotide-diphosphate reductase subunit beta [Sphingobacterium
spiritivorum ATCC 33861]
Length = 328
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 70/308 (22%), Positives = 135/308 (43%), Gaps = 19/308 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ TE D+ WK GL+ D + K+ LG ++L ++ + I
Sbjct: 21 FWEQNIKQFWIDTEYIPSKDIDSWK---GLSWDMKECYKKALGGLTLLDTLQSHTGMPKI 77
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
H+ + + + L EA+H+ ++ I T++ ++F + + KA
Sbjct: 78 IDHIDSLQNKAVLSYMCMMEAIHAKSYSTIFTTVSTTNEINDVFGWVEQNKHLQFKAQTI 137
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+Y +++ +D E L V+ E FY+GF L L +MV A+
Sbjct: 138 DKYYRSIDK-------EDPTDEELFMALGASVLLESFLFYSGFFLPLWLCGQGQMVASAD 190
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
+ I+ DES+H F + I P+ +E + + T+L+E E+ Y E
Sbjct: 191 IIKKIIADESIHGVFVGLIAQDIFRRIPNK--EEVKARFLTLLNELYENELKYTEEIY-- 246
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVT 341
VGL A ++Y+++ N+ +G +P+F+ + NP ++ + + +FF + T
Sbjct: 247 TVVGLTAE-VKEYVRYNGNKALMNLGFDPIFEVKQVNPIV-LNGLNTETTQHDFFSKKST 304
Query: 342 EYQQGAEL 349
Y++ E+
Sbjct: 305 NYEKATEI 312
>gi|312173339|emb|CBX81594.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
amylovora ATCC BAA-2158]
Length = 319
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 62/330 (18%), Positives = 119/330 (36%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W S ++ DE+ + R
Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWNS---ISADEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ P + +F EAVH+ ++ I ++L +
Sbjct: 67 DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + AKA LQ+ V E FY+GF +
Sbjct: 127 DNAPLQAKAQIILQHYYHNDPLKKKI---------------ASVFLESFLFYSGFYLPVY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I++DE++H + + + +E QQ + +L E
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPQRKEELQQFAIELLLELYE 231
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+AY VG ++++ + AN+ +G E LF NP +
Sbjct: 232 NELAYTDALYSG--VGW-QEDVKKFLHYNANKALMNLGYEALFPAEMTDVNPAILAALSP 288
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTEDEDWD 318
>gi|251788642|ref|YP_003003363.1| Ribonucleoside-diphosphate reductase [Dickeya zeae Ech1591]
gi|247537263|gb|ACT05884.1| Ribonucleoside-diphosphate reductase [Dickeya zeae Ech1591]
Length = 320
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/313 (19%), Positives = 111/313 (35%), Gaps = 28/313 (8%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
E + N W+P ++ + +D+ W LTD ER + R ++L A
Sbjct: 22 EVWNRLTANFWLPEKIALSNDMPSWAQ---LTDAERQLTLRVFTGLTLLDTLQNTQGAPA 78
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANW 161
+ P L F EAVH+ ++ I ++L L ++ + +KA
Sbjct: 79 LMADALTPHEEAVLSNIGFMEAVHARSYSAIFSTLCLTNEVDCAYHWSEHNKPLQSKAAL 138
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
L + + V E FY+GF + ++ A
Sbjct: 139 ILSLY---------------RHDQPLKKKIASVFLESFLFYSGFYLPMYWASRGRLTNTA 183
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I+RDE++H + Q ++ Q + +L E+ Y HE
Sbjct: 184 DLIRLIIRDEAVHGYYIGYKYQQGLKRLSTPEQRDLQLFAYELLQTLYDNEVDYTHELYD 243
Query: 282 -KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFE 337
G+ G +++ + AN+ +G E LF NP + ++ +FF
Sbjct: 244 SVGWSG----DVIKFLHYNANKALMNLGYEALFPADMTDVNPAILAALSPGAEENHDFFS 299
Query: 338 TRVTEYQQGAELK 350
+ Y G ++
Sbjct: 300 GAGSSYVIGKAVE 312
>gi|320539491|ref|ZP_08039160.1| putative truncated ribonucleoside-diphosphate reductase 2, beta
subunit, ferritin-like protein [Serratia symbiotica str.
Tucson]
gi|320030616|gb|EFW12626.1| putative truncated ribonucleoside-diphosphate reductase 2, beta
subunit, ferritin-like protein [Serratia symbiotica str.
Tucson]
Length = 309
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 53/287 (18%), Positives = 104/287 (36%), Gaps = 26/287 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P +VP+ +D+ W + LT E+ + R
Sbjct: 14 NWNLIEDDKDLEVWN---RLTANFWLPEKVPLSNDIPSWAT---LTAKEQQLTLRVFTGL 67
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A+ P +F EAVH+ ++ I ++L + +
Sbjct: 68 TLLDTIQNTVGAPALMADALTPHEEAVYSNISFMEAVHARSYSSIFSTLCQTSDVDDAYR 127
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+E ++ KAN L + + V V E FY+GF
Sbjct: 128 WSQENHALQKKANLILTHYHADD---------------PLLMKVASVFLESFLFYSGFYL 172
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A + I+R E++H + + + ++ + + +LH+
Sbjct: 173 PMYWSSRAKLTNTAHLIRLIIRYEAVHGYYIGYKFQKGLERVDVIRRQQVKNVAFDLLHD 232
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
E+ Y + VG + ++ + AN+ +G E LF
Sbjct: 233 LYDNEVCYTQDLYDG--VGWT-EDVKTFLHYNANKALMNLGYEALFP 276
>gi|251782830|ref|YP_002997133.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242391460|dbj|BAH81919.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
Length = 319
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/333 (19%), Positives = 124/333 (37%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+D E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSDIEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + + V AI + + P L F E+VH+ ++ I ++L + E
Sbjct: 60 GGLTLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + + + E FY+G
Sbjct: 120 IFEWTNNNEFLQKKAQIINEIYEHGDALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E P + F++ +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETFREWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEENYTKSLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G+ + D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313
>gi|323127635|gb|ADX24932.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 319
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/333 (19%), Positives = 124/333 (37%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+D E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSDIEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + + V AI + + P L F E+VH+ ++ I ++L + E
Sbjct: 60 GGLTLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + + + E FY+G
Sbjct: 120 IFEWTNNNEFLQKKAQIINEIYEHGDALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E P + F++ +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETFREWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEEDYTKSLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G+ + D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313
>gi|9629834|ref|NP_045318.1| ribonucleotide reductase subunit 2 [Bovine herpesvirus 1]
gi|266916|sp|Q01319|RIR2_BHV1C RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|330772|gb|AAA46063.1| ribonucleotide reductase small subunit [Bovine herpesvirus 1]
gi|995642|emb|CAA90928.1| UL40 [Bovine herpesvirus 1]
gi|1149578|emb|CAA88899.1| UL40 [Bovine herpesvirus 1]
gi|2653307|emb|CAA06093.1| ribonucleotide reductase small subunit [Bovine herpesvirus type
1.1]
Length = 314
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/320 (20%), Positives = 114/320 (35%), Gaps = 37/320 (11%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
+ N W+ TE P+ DD L+ E + F ++++ LV N
Sbjct: 23 PDLDHLRSLSVANRWLETEFPLADDAKD---VARLSGAELEFYRFLFAFLSAADDLVNVN 79
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155
+ + + + Y + Q E VHS + + + + P++
Sbjct: 80 -LGDLSELFTQKDILHYYIEQESIEVVHSRVYSAIQLLLFRNDAVARAGYVEGALGDPAV 138
Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
K +W + S + +V ++ EG++F + FA I L N
Sbjct: 139 RRKVDWLERRVAAAESVAEK--------------YVLMILIEGIFFSSSFAAIAYLRTHN 184
Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
V + I RDE++H + +N + + + EA L A
Sbjct: 185 LFVVTCQTNDLISRDEAVHTAASCCIF-----DNYLGGERPPPARIYELFREAWKL-SAS 238
Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKK 331
P+G L+ + Y+++ A+R I L PLF T+ P M+ +K
Sbjct: 239 LFGCAPRGSHILDVEAISAYVEYSADRLLAAIQLPPLFGTPPPGTDFPLALMT----AEK 294
Query: 332 EKNFFETRVTEYQQGAELKW 351
NFFE R T Y G +
Sbjct: 295 HTNFFERRSTNY-TGTVIND 313
>gi|299779174|ref|YP_003734368.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
IME08]
gi|298105903|gb|ADI55547.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
IME08]
Length = 389
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 73/356 (20%), Positives = 140/356 (39%), Gaps = 32/356 (8%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPT 57
+ N +S + V+V + M + ++ E + W P
Sbjct: 5 LTNENNMSTVFN-TTPVDVLVEPMFFGSGLGIARYDIQ--RHKVFEELCEKQLSFFWRPE 61
Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
EV + D A + N L ++ + NL + + +S+ A+ +S+P ++
Sbjct: 62 EVNLMMDAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQGRAPSAALQALISDPSLDTWV 118
Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS---- 173
F E +HS ++ +I+ +L D ++F+ +I +A +Y + +
Sbjct: 119 ATWTFSETIHSRSYTHIMRNLYTDPSKVFDEILLDDAIMKRAESIGRYYDDVIDKTRLYQ 178
Query: 174 --------FTTGTKDADQEFLQDL---FVFYVVFEGMWFYTGFAQILSLGRAN-KMVGIA 221
F+ G K A E ++ L E + FY FA + + M G A
Sbjct: 179 NALEEYHEFSEGVKQAKYELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIMEGNA 238
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAH 277
+ ++I RDE LHL +I Q+++ +E +Q++ + E E +A
Sbjct: 239 KIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEKEWAT 298
Query: 278 ETMPKGF-VGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
G GLN + ++ ++ R Q GL P+ T +P+PW+ E ++
Sbjct: 299 HLFKDGTCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDAPTRHPYPWIREYLNSD 354
>gi|322412098|gb|EFY03006.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 319
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/333 (19%), Positives = 124/333 (37%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+D E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSDLEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + + V AI + + P L F E+VH+ ++ I ++L + E
Sbjct: 60 GGLTLLDTMQSESGVEAIRQDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + + + E FY+G
Sbjct: 120 IFEWTNNNKFLQKKAQIINEIYEHGDALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E P + F++ +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEAEQETFREWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEEDYTKTLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G+ + D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313
>gi|284009251|emb|CBA76360.1| ribonucleoside-diphosphate reductase beta chain [Arsenophonus
nasoniae]
Length = 321
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 59/322 (18%), Positives = 119/322 (36%), Gaps = 38/322 (11%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + N W+P ++P+ +D+ W + LT +E+ + R
Sbjct: 12 NWNRIEDDKDLEVWNKLTTNFWLPEKIPLSNDIPTWNT---LTKEEKKLTIRVFTGLTLL 68
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ N A+ P + +F EAVH+ ++ I ++L L + +
Sbjct: 69 DTIQNNVGAPALMTDALTPHEEAVMSNISFMEAVHARSYSSIFSTLCLTTDVDDAYQWSE 128
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ KA+ L++ + V E FY+GF +
Sbjct: 129 ENSALQKKAHLILEHY---------------CNTHPLKKKIASVFLESFLFYSGFYLPMY 173
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + I+ E + + +L
Sbjct: 174 WSSRGKLTNTADLIRLIIRDEAIHGYYIGYKFQKSLIKYSDKEKDEIKDFAYLLLLNLYE 233
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI--- 327
EI Y+ VG ++++ + AN+ +G E LF T M++V
Sbjct: 234 NEIKYSESLY--DEVGWT-EDVKKFLHYNANKALMNLGYESLFPET------MTDVSPAI 284
Query: 328 ------DLKKEKNFFETRVTEY 343
+ + +FF + Y
Sbjct: 285 LSALSPNANENHDFFSGSGSSY 306
>gi|213966196|ref|ZP_03394381.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
amycolatum SK46]
gi|213951131|gb|EEB62528.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
amycolatum SK46]
Length = 334
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 61/333 (18%), Positives = 117/333 (35%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +DLA W+ LTD ER + +
Sbjct: 25 NWNRVQDDKDLEVWN---RLTANFWLPEKVPLSNDLADWR---RLTDLERELTMKVFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
+++ A+ ++ + AF +AVH+ ++ +F+
Sbjct: 79 TMLDTVQASVGEISQIQDARTEHEEAVYTNIAFMQAVHAKSYS-----------SVFSTL 127
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
P I A WA+ T + K + + Y GF L
Sbjct: 128 SNTPDIDAAYQWAV--TNDILQARSKAVLKHYYGDVPLKRKAAATLLSSFSLYAGFYLPL 185
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+ A+ + I+RD+++H + + ++ + +L E
Sbjct: 186 HFASRGILTNTADMVRLILRDKAVHGYYSGYKFQRGVETYDTATQRQMKAFVFELLDELY 245
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
LE+ Y+ +GL ++++ AN+ +G F + E F E++
Sbjct: 246 QLELRYSEALY--QPLGL-YDDVANFIRYNANKALMNLGYPQRFNHDETAFK--PEILAA 300
Query: 330 -----KKEKNFFETRVTEYQQG-----AELKWD 352
+ +FF + Y G A+ WD
Sbjct: 301 LTPGSDENHDFFSGSGSAYVIGKAEDTADEDWD 333
>gi|304445906|pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase
From Corynebacterium Ammoniagenes
gi|304445907|pdb|3MJO|B Chain B, Small Subunit (R2f) Of Native Ribonucleotide Reductase
From Corynebacterium Ammoniagenes
Length = 296
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 54/290 (18%), Positives = 108/290 (37%), Gaps = 26/290 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W+ N W+P ++P+ +D+ W N +T E+L R
Sbjct: 19 NWNVIPDEKDLEVWD---RLTGNFWLPEKIPVSNDIQSW---NKMTPQEQLATMRVFTGL 72
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +++ AF E+VH+ ++ I +L E F
Sbjct: 73 TLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFR 132
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E ++ KA + Y + E FY+GF
Sbjct: 133 WSEENENLQRKAKIIMSYYNGDDPLKKKV---------------ASTLLESFLFYSGFYL 177
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ L K+ A+ + I+RDES+H + Q + +E++ + ++++
Sbjct: 178 PMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYD 237
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
EI Y + +G ++++++ AN+ + +G E LF E
Sbjct: 238 LYENEIEYTEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPTDE 284
>gi|329296713|ref|ZP_08254049.1| ribonucleoside-diphosphate reductase [Plautia stali symbiont]
Length = 319
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 58/323 (17%), Positives = 111/323 (34%), Gaps = 26/323 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + NN W+P +VP+ +DL W+S L ++ + R
Sbjct: 10 NWNRIQDEKDLEVWNRLTNNFWLPEKVPLSNDLPAWQS---LAPQQQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ + P L +F EAVH+ ++ I ++L +
Sbjct: 67 DTIQNVIGAPGLMEDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCNTADVDAAYLWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E ++ KA L++ + V E FY+GF +
Sbjct: 127 ENAALQNKAKIVLEHYRASDPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + E QQ + +L
Sbjct: 172 WSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKALETVDDARRAELQQFAIELLLALYE 231
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+ Y VG + ++ + AN+ +G E L NP +
Sbjct: 232 NEVVYTEALYAD--VGWT-EEVKTFLHYNANKALMNLGYEALSPAELTAVNPAILSALSP 288
Query: 328 DLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVE 311
>gi|319947340|ref|ZP_08021573.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
australis ATCC 700641]
gi|319746582|gb|EFV98842.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
australis ATCC 700641]
Length = 319
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPFLQKKAE--- 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + V V E FY+GF L NK+ +AE
Sbjct: 136 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|222834323|gb|EEE72800.1| predicted protein [Populus trichocarpa]
Length = 146
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 81/122 (66%), Positives = 99/122 (81%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
KRVN DKR++NA++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK
Sbjct: 22 STTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKD 81
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
NGLT+DER +IKRNLGFF +++SL ANNIVL YRH++ PECRQ+LLRQAFEEA+H+H
Sbjct: 82 PNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHA 141
Query: 131 FQ 132
+Q
Sbjct: 142 YQ 143
>gi|321309596|ref|YP_004191925.1| ribonucleotide reductase subunit beta [Mycoplasma haemofelis str.
Langford 1]
gi|319801440|emb|CBY92086.1| ribonucleotide reductase of class Ib (aerobic), beta subunit
[Mycoplasma haemofelis str. Langford 1]
Length = 327
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 66/331 (19%), Positives = 127/331 (38%), Gaps = 25/331 (7%)
Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
+ + N + KY + W+ E+P+ D +W LT++E+ + K+
Sbjct: 8 FFSAVNWNNVSD-KYSKV--FWNQNVRQFWIDEEIPLSGDKLIWA--AELTENEKDVYKK 62
Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG- 143
L ++ + + I + NP L E +H+ ++ I ++L +
Sbjct: 63 VLVGLTLLDTHQGSLGMTNIAMSIDNPHATAVLQFMGMMEQMHAKSYSTIFSTLATSQEI 122
Query: 144 -ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
ELF + P + K + + + V V E FY
Sbjct: 123 EELFKWSEQNPELQKKMEIISHHYENIQDDESL-----------YMAMVASVFLESFLFY 171
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
+GF +L L M+ E I+RDE++H + + +I KE ++K
Sbjct: 172 SGFYYMLLLAGKGMMINSGEIINLIIRDEAIHGLYIGVLSMEIFKTFNEEKQKEMKEKVI 231
Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
+L E EI Y K +GL +++++ AN+ +G E + T+ NP
Sbjct: 232 CLLRELMANEIKYTELIYSK--IGL-VEDVNRFLEYNANKALQNLGFENEYSTTDKDINP 288
Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ + + K +FF T+ Y + +++
Sbjct: 289 IVF-NGLKTTTKSHDFFSTKGNGYIKTTKVE 318
>gi|289167885|ref|YP_003446154.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
mitis B6]
gi|288907452|emb|CBJ22289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
mitis B6]
Length = 321
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 23 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 79
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 80 SDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 139
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 140 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 184
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 185 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 243
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 244 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 300
Query: 341 TEY 343
Y
Sbjct: 301 NGY 303
>gi|322389171|ref|ZP_08062732.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
parasanguinis ATCC 903]
gi|321144076|gb|EFX39493.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
parasanguinis ATCC 903]
Length = 321
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 24 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 80
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 81 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPFLQKKAE--- 137
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + V V E FY+GF L NK+ +AE
Sbjct: 138 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 185
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 186 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 244
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 245 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 301
Query: 341 TEY 343
Y
Sbjct: 302 NGY 304
>gi|38638230|ref|NP_944413.1| ribonucleotide reductase subunit 2 [Psittacid herpesvirus 1]
gi|81987371|sp|Q6UDJ1|RIR2_PSHV1 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|34500236|gb|AAQ73719.1| unknown [Psittacid herpesvirus 1]
Length = 313
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 60/306 (19%), Positives = 115/306 (37%), Gaps = 18/306 (5%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
E + N+W E+ D + LT+DE K F A+++ LV N
Sbjct: 18 PDMRELRDLSIANNWNEFELCYARDEKD---VDCLTEDECDFYKFVFCFLAAADDLVNVN 74
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
+ + + + Y Q E VHS T+ + ++ + Y
Sbjct: 75 -LDNLVTLFPQKDIQHYYAEQIRIETVHSRTYSAVQLVFFRNDAIARDRYVLEAVKDGAI 133
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
+ + + + + ++ ++ EG++F + FA I L R +
Sbjct: 134 RRKIDWLSRIQNEGDELTLPEK--------YILMILIEGIFFVSSFAAISYLRRHSIFQV 185
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ I RDE++H + N +P K ++ + EA +E +
Sbjct: 186 TCQSNDLISRDETIHTTASCCIYNNWLKGHP----KPSVKRIHQLFKEAVEIECDFLVAR 241
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKKEKNFFET 338
PK ++ + + +++F ANR IG+ ++ +P + ++ L+K NFFE
Sbjct: 242 APKAARLIDIDAIQSFVRFTANRWLSMIGVPTIYDDPAPDP-TFPLALMSLEKNVNFFEH 300
Query: 339 RVTEYQ 344
R T Y
Sbjct: 301 RSTAYS 306
>gi|296876816|ref|ZP_06900864.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
parasanguinis ATCC 15912]
gi|296432318|gb|EFH18117.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
parasanguinis ATCC 15912]
Length = 321
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 24 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 80
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 81 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPFLQKKAE--- 137
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + V V E FY+GF L NK+ +AE
Sbjct: 138 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 185
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 186 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 244
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 245 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 301
Query: 341 TEY 343
Y
Sbjct: 302 NGY 304
>gi|322391986|ref|ZP_08065450.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
peroris ATCC 700780]
gi|321145212|gb|EFX40609.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
peroris ATCC 700780]
Length = 320
Score = 129 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVNALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTDTNPYLQKKAQIIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ Q + V E FY+GF L NK+ +AE
Sbjct: 139 EIYQNGTPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ + +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPQDEQEKLKDWMYDLLYTLYENEEGYTESLY--D 241
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|307706628|ref|ZP_07643435.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
mitis SK321]
gi|307618083|gb|EFN97243.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
mitis SK321]
Length = 320
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|304373620|ref|YP_003858365.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB16]
gi|299829576|gb|ADJ55369.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB16]
Length = 391
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 61/356 (17%), Positives = 127/356 (35%), Gaps = 37/356 (10%)
Query: 10 IQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ ++ M + V + K+ + W P E+ + D +
Sbjct: 4 VMNTNPDHKHLEQPMFFGEDTGVARYEEQKHRVFENLTEKQLSFFWRPEEIDLSIDRMQY 63
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ + E+++ NL + +++ LA S+ ++ AF E +HS
Sbjct: 64 ---AKMPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSMETWIETWAFSETIHS 120
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS------------------ 170
++ +I +L +D + F+ +I ++ +Y L
Sbjct: 121 RSYTHIQRNLHIDPSKEFDKILRNEAIMKRSASMTKYYDDLIAECHELKNIVLKIEMLTS 180
Query: 171 ----SPSFTTGTKDADQEFLQDLFVFYVVF------EGMWFYTGFAQILSLGRANKMVGI 220
S K ++ + Y+ E + FY F + KM G
Sbjct: 181 HGYPDESIAEYEKKRKEQMRKCKIALYLCMHAVNALEAIRFYVSFTFTFNFAEQGKMEGN 240
Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYA 276
A+ + I RDE+LH I ++ E +++++ + E E +A
Sbjct: 241 AKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMAEIAFQYEEEATQIFLEVYEQEKEWA 300
Query: 277 HETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
G G++ S Y++ + ++R +GL+ FK + NP+PWM++ +
Sbjct: 301 EHLFSIGDVDGVSLKSTIAYIEHLTDQRMRAVGLQSPFKPSPNPYPWMNKWLKSDN 356
>gi|307704819|ref|ZP_07641714.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus
mitis SK597]
gi|307708708|ref|ZP_07645171.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
mitis NCTC 12261]
gi|307709353|ref|ZP_07645811.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
mitis SK564]
gi|307615282|gb|EFN94492.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
mitis NCTC 12261]
gi|307619936|gb|EFN99054.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
mitis SK564]
gi|307621648|gb|EFO00690.1| ribonucleoside-diphosphate reductase 2 subunit beta [Streptococcus
mitis SK597]
Length = 320
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNVEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|322376536|ref|ZP_08051029.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
sp. M334]
gi|321282343|gb|EFX59350.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
sp. M334]
Length = 320
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|322374376|ref|ZP_08048890.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
sp. C300]
gi|321279876|gb|EFX56915.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
sp. C300]
Length = 320
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 110/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAEIIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQGKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|330858746|ref|YP_004415121.1| putative ribonucleotide reductase B subunit [Shigella phage Shfl2]
gi|327397680|gb|AEA73182.1| putative ribonucleotide reductase B subunit [Shigella phage Shfl2]
Length = 389
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 67/361 (18%), Positives = 133/361 (36%), Gaps = 42/361 (11%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ + + W P EV +
Sbjct: 1 MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT--------------- 168
E +HS ++ +I+ +L D ++F+ +I +A +Y
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMKRAESIGRYYDDVLVKTREYQNAVEDY 174
Query: 169 --LSSPSFTTGTKDADQEFLQDLFVFYVV--------FEGMWFYTGFAQILSLGRAN-KM 217
+ S F E + + + E + FY FA + + M
Sbjct: 175 EGILSEGFRKEELGKVVECTKRALMKSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIM 234
Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEI 273
G A+ ++I RDE LHL +I Q+++ +E +Q++ + E E
Sbjct: 235 EGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEK 294
Query: 274 AYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
+A G GLN S ++ ++ R Q GL P+ ++P+PW+ E ++
Sbjct: 295 DWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYLNSD 354
Query: 331 K 331
Sbjct: 355 N 355
>gi|323304329|gb|EGA58102.1| Rnr2p [Saccharomyces cerevisiae FostersB]
Length = 229
Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +LN + L P+KY W+ Y A + W E+ + D+ W N + ++ER
Sbjct: 74 KEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWN--NRMNENER 131
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 132 FFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYI 191
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLS 170
D E LFN +P I KA WAL++ Q
Sbjct: 192 KDPKESEFLFNAIHTIPEIGEKAEWALRWIQDAD 225
>gi|315153942|gb|EFT97958.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0031]
Length = 321
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 62/314 (19%), Positives = 118/314 (37%), Gaps = 29/314 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W++ L+D E+ + G +++ + + + +
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTFLDTVQSESGMDQLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ P L F E+VH+ ++ I ++L + ++F + KA
Sbjct: 79 NDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAERIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + V E FY+GF L NK+ +AE
Sbjct: 139 EIYKNGTPLEKKI---------------ASVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + + +L+E E Y E
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEELYDD- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
+G + ++++ AN+ +G++PLF T NP M+ + +FF
Sbjct: 243 -LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEYQQGA--ELKWD 352
Y G +K D
Sbjct: 300 NGYLLGTVEAMKDD 313
>gi|312867164|ref|ZP_07727374.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
parasanguinis F0405]
gi|311097293|gb|EFQ55527.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
parasanguinis F0405]
Length = 321
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 24 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 80
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 81 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPFLQRKAE--- 137
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + V V E FY+GF L NK+ +AE
Sbjct: 138 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 185
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 186 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 244
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 245 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 301
Query: 341 TEY 343
Y
Sbjct: 302 NGY 304
>gi|323479608|gb|ADX79047.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis 62]
Length = 321
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 61/314 (19%), Positives = 117/314 (37%), Gaps = 29/314 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W++ L+D E+ + G +++ + + + +
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGMDQLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ P L F E+VH+ ++ I ++L + ++F + KA
Sbjct: 79 NDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAERIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + V E FY+GF L NK+ +AE
Sbjct: 139 EIYKNGTPLEKKI---------------ASVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + + +L+E E Y E
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEEHYTEELYDD- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRV 340
+G + ++++ AN+ +G++PLF NP M+ + +FF
Sbjct: 243 -LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEYQQGA--ELKWD 352
Y G +K D
Sbjct: 300 NGYLLGTVEAMKDD 313
>gi|307132178|ref|YP_003884194.1| ribonucleoside-diphosphate reductase 2, subunit beta, ferritin-like
protein [Dickeya dadantii 3937]
gi|306529707|gb|ADM99637.1| ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like
protein [Dickeya dadantii 3937]
Length = 330
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 62/319 (19%), Positives = 113/319 (35%), Gaps = 31/319 (9%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
E + N W+P ++ + +D+ W L+D ER + R ++L A
Sbjct: 32 EVWNRLTTNFWLPEKIALSNDMPSWAQ---LSDIERQLTLRVFTGLTLLDTLQNTQGAPA 88
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
+ P L F EAVH+ ++ I ++L L + ++ + KA
Sbjct: 89 LMADALTPHEEAVLSNIGFMEAVHARSYSAIFSTLCLTSEVDDAYSWSERNQPLQNKAAL 148
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
L + Q V E FY+GF + ++ A
Sbjct: 149 ILSHYQHDDPLKKKI---------------ASVFLESFLFYSGFYLPMYWASRGQLTNTA 193
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I+RDE++H + Q ++ Q + +L E+ Y HE
Sbjct: 194 DLIRLIIRDEAVHGYYIGYKYQQGLKRVGTQQQRDLQAFAYDLLQTLYDNEVDYTHELYD 253
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFET 338
VG + +++ + AN+ +G E LF NP + ++ +FF
Sbjct: 254 D--VGWS-DDVVKFLHYNANKALMNLGYEALFPAGMTDVNPAILAALSPGAEENHDFFSG 310
Query: 339 RVTEYQQGAELK-----WD 352
+ Y G ++ WD
Sbjct: 311 AGSSYVIGKAVETEDEDWD 329
>gi|56808544|ref|ZP_00366279.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus
pyogenes M49 591]
gi|209559615|ref|YP_002286087.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes NZ131]
gi|209540816|gb|ACI61392.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
[Streptococcus pyogenes NZ131]
Length = 319
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 120/333 (36%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+ E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + V AI + P L F E+VH+ ++ I ++L + E
Sbjct: 60 GGLTLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + + + E FY+G
Sbjct: 120 IFEWTNNNEFLQKKAQIINEIYEHGDALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E P + F+ +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEEKYTKTLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G+ + D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313
>gi|293374706|ref|ZP_06621014.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
sanguinis PC909]
gi|325840602|ref|ZP_08167083.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
sp. HGF1]
gi|292646620|gb|EFF64622.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
sanguinis PC909]
gi|325490251|gb|EGC92584.1| ribonucleoside-diphosphate reductase, beta subunit [Turicibacter
sp. HGF1]
Length = 321
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 72/317 (22%), Positives = 130/317 (41%), Gaps = 24/317 (7%)
Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
Y + + YL W+P E+P+ +D ++W + L ++ +L +R LG ++ +
Sbjct: 15 YQFYDDLYLKQTEQFWLPEEIPVSEDKSIWDT---LDENIKLTYERILGGLTLLDT-EQS 70
Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSIT 156
+ I N + L A E++H+ ++ I +L E ELFN E +
Sbjct: 71 TGIQKIAEKSDNLFIKSILALFAGFESIHARSYSTIFQTLCTTERIEELFNWVEETKPLQ 130
Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
K + ++ G D + F+ + + EG+ FY+GF L L K
Sbjct: 131 EKVDQIMRSY---------YGVADKESLFMSMVGC--LCLEGICFYSGFYLPLWLAGQGK 179
Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
MV E I+RDE LH Q+ E + +Q++ M+ E +E+ Y+
Sbjct: 180 MVNSGEIINLILRDEKLHTVGVGFFAQQLLSEFDESIQAKLKQQAVEMMQEIYEVEVEYS 239
Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEK 333
+ + Y+Q+ N + L PLF E NP ++ + K
Sbjct: 240 KVLYEN--LDM-IDDVVSYIQYNVNYALQCLNLNPLFDIVESDINPIV-LNGISTETKNH 295
Query: 334 NFFETRVTEYQQGAELK 350
+FF T+ Y + +++
Sbjct: 296 DFFSTKGNGYIKTTKVE 312
>gi|306829459|ref|ZP_07462649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
mitis ATCC 6249]
gi|304428545|gb|EFM31635.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
mitis ATCC 6249]
Length = 320
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 SDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAE--- 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + V V E FY+GF L NK+ +AE
Sbjct: 136 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|322387902|ref|ZP_08061509.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
infantis ATCC 700779]
gi|321141175|gb|EFX36673.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
infantis ATCC 700779]
Length = 320
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 115/303 (37%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNQEKDLVGKVFGGLTLLDTMQSETGVNALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFEWTDTNPYLQKKAQ--- 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + V V E FY+GF L NK+ +AE
Sbjct: 136 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ + +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKDWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|307268568|ref|ZP_07549940.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX4248]
gi|306515057|gb|EFM83600.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX4248]
Length = 321
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 63/314 (20%), Positives = 119/314 (37%), Gaps = 29/314 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W++ L+D E+ + G F +++ + + + +
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGFTLLDTVQSESGMDQLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ P L F E+VH+ ++ I ++L + ++F + KA
Sbjct: 79 NDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAERIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + V E FY+GF L NK+ +AE
Sbjct: 139 EIYKNGTPLEKKI---------------ASVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + + +L+E E Y E
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEELYDD- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
+G + ++++ AN+ +G++PLF T NP M+ + +FF
Sbjct: 243 -LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEYQQGA--ELKWD 352
Y G +K D
Sbjct: 300 NGYLLGTVEAMKDD 313
>gi|331266449|ref|YP_004326079.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
oralis Uo5]
gi|326683121|emb|CBZ00739.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
oralis Uo5]
Length = 320
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 SDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAE--- 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + V V E FY+GF L NK+ +AE
Sbjct: 136 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|10834911|ref|NP_066872.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 3]
gi|5102912|dbj|BAA78729.1| UL40 protein [Marek's disease virus serotype 2 MDV2]
gi|5689312|dbj|BAA82936.1| UL40 product homolog [Marek's disease virus serotype 2 MDV2]
gi|10800005|dbj|BAB16550.1| UL40 protein [Gallid herpesvirus 3]
Length = 353
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 60/312 (19%), Positives = 113/312 (36%), Gaps = 20/312 (6%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
+ N W TE + +DL L+++E+ + F ++++ LV N
Sbjct: 61 PDIGHLRALSIMNRWTETEFVVAEDLGD---VAKLSEEEKNFYRFLFTFLSAADDLVNLN 117
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
+ + + Y Q EAVHS + I L ++ Y + +
Sbjct: 118 -IDNLLGLFEQKDIHHYYFEQECIEAVHSRAYSIIQLMLFDNDSSARAKYVQSALESPVI 176
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
L++ + K ++ ++ EG++F FA+I L N V
Sbjct: 177 QSKLEWLDRRILECTSIPEK----------YILMILTEGIFFSASFARIAYLRTNNLFVV 226
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ I RDE++H+ + N K + + + EA LE A+
Sbjct: 227 TCQINNLISRDEAIHVEASCCIFKNYIAGN-----KPSTARIQALFSEAVDLECAFLRAA 281
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
P+ L+ S Y+++ A+R + + P++ + ++ NFFE R
Sbjct: 282 APRDSRLLDIGSICSYVRYSADRLLRMLDVPPIYGEPSPAADFPLSLMSASNNTNFFERR 341
Query: 340 VTEYQQGAELKW 351
T Y G+
Sbjct: 342 STAYS-GSVSND 352
>gi|315223183|ref|ZP_07865044.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
anginosus F0211]
gi|315187615|gb|EFU21369.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
anginosus F0211]
Length = 319
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 114/303 (37%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + + V AI
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSPEEKDLVGKVFGGLTLLDTMQSQSGVEAIR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ P L F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 GDIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFEWTNTNPYLQKKAEIIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ ++ V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGNALEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + F++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQETFREWMYDLLYTLYENEEGYTETLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G + LF T NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDSLFPDTADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|270292678|ref|ZP_06198889.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
sp. M143]
gi|270278657|gb|EFA24503.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
sp. M143]
Length = 322
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 SDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAEIIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKI---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|29375101|ref|NP_814254.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecalis V583]
gi|227519132|ref|ZP_03949181.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecalis TX0104]
gi|227553836|ref|ZP_03983885.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecalis HH22]
gi|229547642|ref|ZP_04436367.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecalis TX1322]
gi|229548395|ref|ZP_04437120.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecalis ATCC 29200]
gi|255971023|ref|ZP_05421609.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1]
gi|255973536|ref|ZP_05424122.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2]
gi|256617388|ref|ZP_05474234.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC
4200]
gi|256761391|ref|ZP_05501971.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3]
gi|256852443|ref|ZP_05557819.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecalis T8]
gi|256957628|ref|ZP_05561799.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5]
gi|256959663|ref|ZP_05563834.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96]
gi|256963238|ref|ZP_05567409.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
HIP11704]
gi|257080134|ref|ZP_05574495.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1]
gi|257080866|ref|ZP_05575227.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol]
gi|257083550|ref|ZP_05577911.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1]
gi|257085823|ref|ZP_05580184.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6]
gi|257088966|ref|ZP_05583327.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188]
gi|257415187|ref|ZP_05592181.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
AR01/DG]
gi|257418242|ref|ZP_05595236.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11]
gi|257420749|ref|ZP_05597739.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecalis X98]
gi|293384855|ref|ZP_06630698.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis R712]
gi|293389145|ref|ZP_06633612.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis S613]
gi|294780704|ref|ZP_06746065.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis PC1.1]
gi|300861776|ref|ZP_07107856.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TUSoD Ef11]
gi|307272281|ref|ZP_07553541.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0855]
gi|307275556|ref|ZP_07556697.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX2134]
gi|307282794|ref|ZP_07562994.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0860]
gi|307288831|ref|ZP_07568809.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0109]
gi|307290616|ref|ZP_07570524.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0411]
gi|312900212|ref|ZP_07759524.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0470]
gi|312904832|ref|ZP_07763972.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0635]
gi|312908153|ref|ZP_07767131.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis DAPTO 512]
gi|312952106|ref|ZP_07770987.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0102]
gi|312979089|ref|ZP_07790804.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis DAPTO 516]
gi|29342560|gb|AAO80325.1| ribonucleoside-diphosphate reductase 2, beta subunit [Enterococcus
faecalis V583]
gi|227073409|gb|EEI11372.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecalis TX0104]
gi|227177089|gb|EEI58061.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecalis HH22]
gi|229306611|gb|EEN72607.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecalis ATCC 29200]
gi|229307134|gb|EEN73121.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecalis TX1322]
gi|255962041|gb|EET94517.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T1]
gi|255966408|gb|EET97030.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T2]
gi|256596915|gb|EEU16091.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis ATCC
4200]
gi|256682642|gb|EEU22337.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T3]
gi|256712297|gb|EEU27329.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecalis T8]
gi|256948124|gb|EEU64756.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis DS5]
gi|256950159|gb|EEU66791.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Merz96]
gi|256953734|gb|EEU70366.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
HIP11704]
gi|256988164|gb|EEU75466.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis JH1]
gi|256988896|gb|EEU76198.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis E1Sol]
gi|256991580|gb|EEU78882.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis Fly1]
gi|256993853|gb|EEU81155.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis D6]
gi|256997778|gb|EEU84298.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis CH188]
gi|257157015|gb|EEU86975.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis
ARO1/DG]
gi|257160070|gb|EEU90030.1| ribonucleoside-diphosphate reductase [Enterococcus faecalis T11]
gi|257162573|gb|EEU92533.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecalis X98]
gi|291077859|gb|EFE15223.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis R712]
gi|291081516|gb|EFE18479.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis S613]
gi|294452314|gb|EFG20755.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis PC1.1]
gi|295114163|emb|CBL32800.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Enterococcus sp. 7L76]
gi|300848301|gb|EFK76058.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TUSoD Ef11]
gi|306498330|gb|EFM67839.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0411]
gi|306500300|gb|EFM69639.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0109]
gi|306503650|gb|EFM72881.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0860]
gi|306507661|gb|EFM76790.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX2134]
gi|306511170|gb|EFM80180.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0855]
gi|310625861|gb|EFQ09144.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis DAPTO 512]
gi|310629888|gb|EFQ13171.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0102]
gi|310631838|gb|EFQ15121.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0635]
gi|311288123|gb|EFQ66679.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis DAPTO 516]
gi|311292573|gb|EFQ71129.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0470]
gi|315026267|gb|EFT38199.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX2137]
gi|315028520|gb|EFT40452.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX4000]
gi|315032246|gb|EFT44178.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0017]
gi|315035532|gb|EFT47464.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0027]
gi|315143982|gb|EFT87998.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX2141]
gi|315146930|gb|EFT90946.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX4244]
gi|315155004|gb|EFT99020.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0043]
gi|315158779|gb|EFU02796.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0312]
gi|315161036|gb|EFU05053.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0645]
gi|315166222|gb|EFU10239.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX1302]
gi|315167729|gb|EFU11746.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX1341]
gi|315170811|gb|EFU14828.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX1342]
gi|315173869|gb|EFU17886.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX1346]
gi|315574921|gb|EFU87112.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0309B]
gi|315576500|gb|EFU88691.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0630]
gi|315582368|gb|EFU94559.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0309A]
gi|327534208|gb|AEA93042.1| ribonucleotide-diphosphate reductase subunit beta [Enterococcus
faecalis OG1RF]
Length = 321
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 61/314 (19%), Positives = 117/314 (37%), Gaps = 29/314 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W++ L+D E+ + G +++ + + + +
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGMDQLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ P L F E+VH+ ++ I ++L + ++F + KA
Sbjct: 79 NDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAERIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + V E FY+GF L NK+ +AE
Sbjct: 139 EIYKNGTPLEKKI---------------ASVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + + +L+E E Y E
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEELYDD- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRV 340
+G + ++++ AN+ +G++PLF NP M+ + +FF
Sbjct: 243 -LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEYQQGA--ELKWD 352
Y G +K D
Sbjct: 300 NGYLLGTVEAMKDD 313
>gi|315149360|gb|EFT93376.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX0012]
Length = 321
Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats.
Identities = 60/314 (19%), Positives = 116/314 (36%), Gaps = 29/314 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W++ + L E+ + G +++ + + + +
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWRTLSNL---EKTTVGYVFGGLTLLDTVQSESGMDQLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ P L F E+VH+ ++ I ++L + ++F + KA
Sbjct: 79 NDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAERIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + V E FY+GF L NK+ +AE
Sbjct: 139 EIYKNGTPLEKKI---------------ASVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + + +L+E E Y E
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQDKLKDWMYNLLYELYENEERYTEELYDD- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRV 340
+G + ++++ AN+ +G++PLF NP M+ + +FF
Sbjct: 243 -LGWT-EEVKTFLRYNANKALMNLGMDPLFADTANDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEYQQGA--ELKWD 352
Y G +K D
Sbjct: 300 NGYLLGTVEAMKDD 313
>gi|327458665|gb|EGF05013.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK1057]
Length = 319
Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats.
Identities = 64/319 (20%), Positives = 122/319 (38%), Gaps = 30/319 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + + WE W+ T +P+ +DL W+ L+ E+ ++ + G
Sbjct: 9 NWNVIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGL 62
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
++L + + V A+ + + F E+VH+ ++ I ++L E+F+
Sbjct: 63 TLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFD 122
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
P + KA + + + GT + + V E FY+GF
Sbjct: 123 WTNTNPYLQKKAE--------IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFT 167
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L NK+ +AE + I+RDES+H + E P ++ ++ +L+
Sbjct: 168 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYT 227
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E Y VG + ++++ AN+ +G +PLF NP M+
Sbjct: 228 LYENEEGYTESLY--DTVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MN 283
Query: 325 EVIDLKKEKNFFETRVTEY 343
+ +FF Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302
>gi|269468252|gb|EEZ79942.1| ribonucleotide-diphosphate reductase subunit beta [uncultured SUP05
cluster bacterium]
Length = 319
Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 22/284 (7%)
Query: 70 SKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
L +E+ + NL + +S+ + +A +S PE ++ +F E +HS
Sbjct: 2 DFAKLLPNEKHIFISNLQYQILLDSVQGRSPNIAFLPIVSLPELENWIETWSFSETIHSR 61
Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS------------FTTG 177
++ +II ++ + G +F+ + I +A ++ L +
Sbjct: 62 SYTHIIRAIVNEPGVVFDDIMKTDKIIQRAESVSKHYDELIKCTQAYLLHGEGKLQIDGK 121
Query: 178 TKDADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
D D L+ + + E + FY FA + M G A+ + I RDE+L
Sbjct: 122 NADVDLYCLKRQLYLTVMSVNILEAVRFYVSFACSFAFAERKVMEGNAKIIKMIARDEAL 181
Query: 234 HLNFGIDVINQIK--IENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
HL ++N ++ ++P + KE + + M EA E +A G +GLN
Sbjct: 182 HLTGTQHMLNLMRDGKDDPDMEKIAKECENEVIQMFKEACEQEKDWAEYLFRDGSMIGLN 241
Query: 289 APSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKK 331
A +QY+++I N R + +GL+P+F ++ NP PW++ +D
Sbjct: 242 ADILKQYLEYITNVRMNALGLKPIFDEHVTNPLPWINSWLDSDN 285
>gi|332638431|ref|ZP_08417294.1| ribonucleotide-diphosphate reductase subunit beta [Weissella
cibaria KACC 11862]
Length = 320
Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats.
Identities = 61/303 (20%), Positives = 109/303 (35%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ +T++E ++ G ++L + + + ++
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KMTEEEHYLVGHVFGGLTLLDTLQSQDGMASLK 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
R + L F E+VH+ ++ I +L E+F+ + KA
Sbjct: 79 RSVRTQHEEAVLNNIEFMESVHAKSYSSIFETLNTPAEIDEIFSWTNTNDFLQYKAQRIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
Q QT V E FY+GF L NK+ +AE
Sbjct: 139 QIYQTGDDLQKKV---------------ASVFLETFLFYSGFYTPLWYLGHNKLNNVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E E + +L + E Y
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGFNELTEDQQSEMKMWMYDLLLDLYNNEEQYTKHLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
+G S ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -IGWT-ESVLTFLRYNANKALMNLGQDPLFPDGAEDVNPIV-MNGISTTTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|293365329|ref|ZP_06612046.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
oralis ATCC 35037]
gi|306825287|ref|ZP_07458629.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sp. oral taxon 071 str. 73H25AP]
gi|307703869|ref|ZP_07640810.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
oralis ATCC 35037]
gi|315613100|ref|ZP_07888010.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis ATCC 49296]
gi|291316779|gb|EFE57215.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
oralis ATCC 35037]
gi|304432723|gb|EFM35697.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sp. oral taxon 071 str. 73H25AP]
gi|307622704|gb|EFO01700.1| ribonucleoside-diphosphate reductase 2, subunit beta [Streptococcus
oralis ATCC 35037]
gi|315314662|gb|EFU62704.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis ATCC 49296]
Length = 320
Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 SDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAEIIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|332362636|gb|EGJ40434.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK49]
Length = 332
Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats.
Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V A+
Sbjct: 35 WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 91
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + F E+VH+ ++ I ++L E+F P + KA
Sbjct: 92 KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 148
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + + V E FY+GF L NK+ +AE
Sbjct: 149 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 196
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 197 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 254
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 255 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 312
Query: 341 TEY 343
Y
Sbjct: 313 NGY 315
>gi|66391516|ref|YP_239041.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB43]
gi|62288604|gb|AAX78587.1| NrdB ribonucleotide reductase B subunit [Enterobacteria phage RB43]
Length = 391
Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats.
Identities = 60/356 (16%), Positives = 122/356 (34%), Gaps = 37/356 (10%)
Query: 10 IQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ ++ M + V + K+ + W P EV + D +
Sbjct: 4 VMNTNPDHKHLEQPMFFGEDTGVARYEEQKHRVFETLTEKQLSFFWRPEEVDLSIDRMQY 63
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ + E+++ NL + +++ LA S+ ++ AF E +HS
Sbjct: 64 ---AKMPEHEKIIFDSNLQYQTLLDTIQGRGPNLAFLPIASDVSMETWIETWAFSETIHS 120
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL-- 186
++ +I +L +D + F+ +I ++ +Y L + E +
Sbjct: 121 RSYTHIQRNLHIDPAKEFDKILRNEAIMKRSASMTKYYDDLIAECHELKNIVLKIEMMTS 180
Query: 187 --------------------------QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
E + FY F + KM G
Sbjct: 181 HGYPDESIAEYEQKRKEQMRKCKVALYLCMHAVNALEAIRFYVSFTFTFNFAEQGKMEGN 240
Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYA 276
A+ + I RDE+LH I ++ E +++++ + E E +A
Sbjct: 241 AKIMRLIARDEALHQKGTQSKIRLWQMGKDDPEMAEIAYQYEEEATQIFLEVYEQEKEWA 300
Query: 277 HETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKK 331
G G+ S Y++ + ++R +GL+ FK + NP+PWM++ +
Sbjct: 301 EHLFSIGDVDGVTLKSTIAYIEHLTDQRMRAVGLQSPFKPSPNPYPWMNKWLKSDN 356
>gi|260583950|ref|ZP_05851698.1| ribonucleoside-diphosphate reductase, beta subunit [Granulicatella
elegans ATCC 700633]
gi|260158576|gb|EEW93644.1| ribonucleoside-diphosphate reductase, beta subunit [Granulicatella
elegans ATCC 700633]
Length = 336
Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats.
Identities = 66/352 (18%), Positives = 126/352 (35%), Gaps = 40/352 (11%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEK-----------YLSACNNHWMPTEVPMQDDLAL 67
+ +KR N N P+ Y A + + W+ T +P+ +DL
Sbjct: 1 MSEKRYFNEILSQNASAPVAYYKAIDWNQVEDMIDKMTWEKLTEQFWLDTRIPVSNDLDD 60
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
W++ L+ E+ ++ + G ++L + + ++ F E+VH
Sbjct: 61 WRT---LSPAEKDVVGKVFGGLTLLDTLQSEEGASLMKDYVRTQHEEAVWNNIQFMESVH 117
Query: 128 SHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+ ++ I ++L E+F + KA + Q+
Sbjct: 118 AKSYSTIFSTLHTKAEIEEIFEWTNNNEFLQYKAQKINEIYQSRD--------------- 162
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ V + E FY+GF L NK+ +AE + I+RDES+H + Q
Sbjct: 163 ALKMKVASTMLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYTGYKFQQG 222
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
E P + + + E E+ Y + VG + ++++ AN+
Sbjct: 223 YNELPLEEQETLKMWVYQLCLELYQNEVKYTQSIYDQ--VGWT-EKVKVFIRYNANKALQ 279
Query: 306 QIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
+G +PLF +P M+ + +FF Y G ++ D
Sbjct: 280 NLGFDPLFPDTAEDVDPIV-MNGISTGTSNHDFFSQVGNGYLLGTVEAMEDD 330
>gi|227510692|ref|ZP_03940741.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
gi|227513708|ref|ZP_03943757.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
buchneri ATCC 11577]
gi|227522501|ref|ZP_03952550.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
hilgardii ATCC 8290]
gi|227083027|gb|EEI18339.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
buchneri ATCC 11577]
gi|227090323|gb|EEI25635.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
hilgardii ATCC 8290]
gi|227189813|gb|EEI69880.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
Length = 318
Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats.
Identities = 59/303 (19%), Positives = 114/303 (37%), Gaps = 26/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL+ W++ L D + ++ G ++L + + ++
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGMASLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ + P L F E+VH+ ++ I ++L E E+F+ + KA
Sbjct: 79 KDVQTPHETAVLNNIQFMESVHAKSYSSIFSTLNTPEQIDEIFDWSDTEEFLQNKALKIR 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ P + V E FY+GF L NK+ +AE
Sbjct: 139 DIYENNPDPLKKK--------------IASVFLETFLFYSGFYTPLWYLGHNKIPNVAEI 184
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + P ++ + +L++ E Y H +
Sbjct: 185 IKLILRDESVHGTYIGYKFQIGFNQLPKTKQEDLKNWLYDLLYKLYANEEKYTHLLYDQ- 243
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
G ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 244 -TGWT-DDVLVFIRYNANKALMNLGQDPLFPDTAEDVNPVV-MNGISTSTANHDFFSQVG 300
Query: 341 TEY 343
Y
Sbjct: 301 NGY 303
>gi|307244651|ref|ZP_07526755.1| ribonucleoside-diphosphate reductase, beta subunit
[Peptostreptococcus stomatis DSM 17678]
gi|306492032|gb|EFM64081.1| ribonucleoside-diphosphate reductase, beta subunit
[Peptostreptococcus stomatis DSM 17678]
Length = 328
Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats.
Identities = 68/304 (22%), Positives = 119/304 (39%), Gaps = 19/304 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+P EVP+ D+ W + L++ ER++ KR L ++ N+ + ++
Sbjct: 30 FWDENVKQFWLPEEVPISKDIPSW---SQLSESERVLYKRVLAGLTLLDTKQGNDGIPSM 86
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
N + + L E +H+ ++ I T+L + +LF E P + KA
Sbjct: 87 MELTENFQRKAVLSFMGTMEEIHAKSYSSIFTTLLSKQEINDLFVWIEEEPLLQNKAKLV 146
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
L+ + +P V E FY+GF L L KM+ E
Sbjct: 147 LRQYKNTHTPKGL-----------YMSMATSVFLESFLFYSGFFYPLFLAGQGKMISSGE 195
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
I+RDESLH + + + E + E ++K ++L E E Y
Sbjct: 196 IISLILRDESLHGKYIGLLAQEKFNEFHYDDKNELKEKVYSLLKELMENEEKYTKLLYEG 255
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
GL ++++ AN +G E +K ++ + K +FF T+
Sbjct: 256 S--GL-EEQVINFLKYNANTALTNMGFEEFYKVEPVNAIVLNGLSTETKTHDFFSTKGNG 312
Query: 343 YQQG 346
YQ+G
Sbjct: 313 YQKG 316
>gi|297567587|ref|YP_003686558.1| hypothetical protein Mesil_3232 [Meiothermus silvanus DSM 9946]
gi|297567764|ref|YP_003686735.1| hypothetical protein Mesil_3416 [Meiothermus silvanus DSM 9946]
gi|296852036|gb|ADH65050.1| hypothetical protein Mesil_3232 [Meiothermus silvanus DSM 9946]
gi|296852213|gb|ADH65227.1| hypothetical protein Mesil_3416 [Meiothermus silvanus DSM 9946]
Length = 323
Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats.
Identities = 61/309 (19%), Positives = 112/309 (36%), Gaps = 26/309 (8%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ E+P+ DD W + L +ER ++ L ++L + +
Sbjct: 17 FWDQNVRQFWVDEEIPLADDKLTWTT---LAPEERETYEKVLVGLTLLDTLQGGVGMPLL 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA 162
+ + + + + L E +H+ ++ I ++L LF P + AK
Sbjct: 74 VQTMESAQVKAVLSFMGAMEQMHAKSYSLIFSTLSPLPRIETLFRWAEGHPLLQAKVARV 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+ + + V+ E FY+GF L L ++V E
Sbjct: 134 EGRYRGVFAGDAGL----------YLALANSVLLESYLFYSGFYYPLLLAGEGRLVNSGE 183
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-P 281
I+RDE++H + + Q+ P + R L + + LE AY E P
Sbjct: 184 IISLILRDEAIHGVYVGMLAQQVYARLPEGEQSRLRTALREDLEKLSALEEAYTEELYAP 243
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDL-KKEKNFFE 337
G V ++ ++ A++ +G P F NP + I L K +FF
Sbjct: 244 IGRV----EEVRRFCRYNADKALMNLGQPPYFGVRAEEVNPV--VLAGISLRTKNHDFFS 297
Query: 338 TRVTEYQQG 346
T+ Y +
Sbjct: 298 TKGNGYVKA 306
>gi|148994532|ref|ZP_01823712.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae SP9-BS68]
gi|147927202|gb|EDK78238.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae SP9-BS68]
Length = 319
Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|310764903|gb|ADP09853.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia sp.
Ejp617]
Length = 319
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 61/330 (18%), Positives = 118/330 (35%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W S L +++ + R
Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWNS---LNAEQQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ P + +F EAVH+ ++ I ++L +
Sbjct: 67 DTIQNTLGAPALMADALTPHEEAVMSNISFMEAVHARSYSSIFSTLCHTSDVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + KA LQ+ V E FY+GF +
Sbjct: 127 DNAPLQGKAQIILQHYYHNDPLKKKI---------------ASVFLESFLFYSGFYLPVY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I++DE++H + + + L +E QQ + +L E
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPLRKEELQQFAIELLLELYE 231
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+AY VG ++++ + AN+ +G E LF NP +
Sbjct: 232 NELAYTEALYAG--VGW-QKDVKKFLHYNANKALMNLGYEALFPADMTDVNPAILAALSP 288
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTQDEDWD 318
>gi|168489010|ref|ZP_02713209.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae SP195]
gi|183572389|gb|EDT92917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae SP195]
gi|332073523|gb|EGI84002.1| ribonucleotide reductase, small chain family protein [Streptococcus
pneumoniae GA17570]
Length = 320
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|238695377|ref|YP_002922570.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
JS10]
gi|220029513|gb|ACL78447.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
JS10]
Length = 379
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 72/350 (20%), Positives = 138/350 (39%), Gaps = 32/350 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ E + W P EV +
Sbjct: 1 MSTVFN-TTPVDVLVEPMFFGSGLGIARYDIQ--RHKVFEELCEKQLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ A+ +S+P ++ F
Sbjct: 58 DAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQGRAPSAALQALISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS---------- 173
E +HS ++ +I+ +L D ++F+ +I +A +Y + +
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEILLDEAIMKRAESIGRYYDDVIEKTRLYQNALEEY 174
Query: 174 --FTTGTKDADQEFLQDL---FVFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYI 227
F+ G K A E ++ L E + FY FA + + M G A+ ++I
Sbjct: 175 HEFSEGVKQAKYELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFI 234
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG 283
RDE LHL +I Q+++ +E +Q++ + E E +A G
Sbjct: 235 ARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEKEWAGHLFKDG 294
Query: 284 F-VGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
GLN + ++ ++ R Q GL P+ T +P+PW+ E ++
Sbjct: 295 TCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDAPTRHPYPWIREYLNSD 344
>gi|262038309|ref|ZP_06011695.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
goodfellowii F0264]
gi|261747660|gb|EEY35113.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
goodfellowii F0264]
Length = 334
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 19/306 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ TE D+ W S L + +L + LG ++L ++ + I
Sbjct: 22 FWEQNLKQFWIDTEYIPSKDIDSWHS---LEPEMKLAYLQVLGGLTLLDTLQSHTGMPKI 78
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
H+ + +CR L E +H+ ++ I T++ E FN +E + KAN
Sbjct: 79 IDHIESLQCRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFNWVQENEHLQYKANKI 138
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y Q +++P T + V E FY+GF L L +MV +
Sbjct: 139 DYYYQKMNNPKATKRE-------IYMALCASVYLETYLFYSGFFLPLWLAGQGEMVASCD 191
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
+ I+ DES+H F + +I + +++ + ++H+ E Y E
Sbjct: 192 IIKKIIADESIHGVFVGLLSQEIYATFSEEEKESVRKELKELMHDLYENEARYTDEVY-- 249
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETRV 340
G VGL A ++Y+++ AN+ +G E F+ + NP + ++++ + +FF +
Sbjct: 250 GDVGLTA-DVKEYIRYNANKALMNLGFEEEFEVKDVNPI--VLNGLNVETTQHDFFSKKS 306
Query: 341 TEYQQG 346
T Y++
Sbjct: 307 TNYEKA 312
>gi|703073|gb|AAA80557.1| ribonucleotide reductase small subunit [Gallid herpesvirus 2]
Length = 354
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/312 (18%), Positives = 114/312 (36%), Gaps = 21/312 (6%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
+ N W TE + DDL E+ + F ++++ LV N
Sbjct: 63 PDIGNLRSLSIMNRWTETEFVIADDLEDVGKLKN----EKNFYRFLFTFLSAADDLVNLN 118
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
+ ++ + + Y Q EAVHS + I L ++ Y +
Sbjct: 119 -IDSLLSLFTQKDIHHYYFEQECIEAVHSRAYSIIQLMLFSNDQAARQEYVTSTLRSPAI 177
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
L++ + + A+ + + ++ ++ EG++F FA I L N V
Sbjct: 178 LSKLEWLER----------RVAECTSIAEKYILMILIEGIFFTASFAAIAYLRVNNLFVV 227
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ I RDE++H+ + N K + T+ EA +E +
Sbjct: 228 TCQINNLISRDEAIHVEASCCIFK-----NYLAGPKPTTARIHTLFKEAVTVECEFLRTA 282
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
P+ +N + Y+++ A+R + + P++ + P + ++ NFFE R
Sbjct: 283 APRTSNIINIDAICSYVRYSADRLLRALDILPIYDEPKPPADFPLVLMSAASNTNFFERR 342
Query: 340 VTEYQQGAELKW 351
T Y G+
Sbjct: 343 NTAYS-GSVSND 353
>gi|149004132|ref|ZP_01828935.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae SP14-BS69]
gi|237649545|ref|ZP_04523797.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae CCRI 1974]
gi|237822455|ref|ZP_04598300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae CCRI 1974M2]
gi|147757865|gb|EDK64875.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae SP14-BS69]
Length = 320
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFEWTNTNPYLQKKAEIVN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|15901045|ref|NP_345649.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae TIGR4]
gi|111657123|ref|ZP_01407908.1| hypothetical protein SpneT_02001649 [Streptococcus pneumoniae
TIGR4]
gi|14972661|gb|AAK75289.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
pneumoniae TIGR4]
Length = 320
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|15903110|ref|NP_358660.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae R6]
gi|116517162|ref|YP_816517.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae D39]
gi|148985789|ref|ZP_01818917.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae SP3-BS71]
gi|148990437|ref|ZP_01821595.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae SP6-BS73]
gi|148999044|ref|ZP_01826476.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae SP11-BS70]
gi|149008157|ref|ZP_01831676.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae SP18-BS74]
gi|149026429|ref|ZP_01836566.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae SP23-BS72]
gi|168483243|ref|ZP_02708195.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae CDC1873-00]
gi|168486506|ref|ZP_02711014.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae CDC1087-00]
gi|168491101|ref|ZP_02715244.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae CDC0288-04]
gi|168493105|ref|ZP_02717248.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae CDC3059-06]
gi|168577270|ref|ZP_02723064.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae MLV-016]
gi|169833110|ref|YP_001694622.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae Hungary19A-6]
gi|182684087|ref|YP_001835834.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
pneumoniae CGSP14]
gi|194397329|ref|YP_002037788.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae G54]
gi|225854653|ref|YP_002736165.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae JJA]
gi|225856856|ref|YP_002738367.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae P1031]
gi|225858968|ref|YP_002740478.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae 70585]
gi|303255568|ref|ZP_07341620.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae BS455]
gi|303260588|ref|ZP_07346554.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
pneumoniae SP-BS293]
gi|303262722|ref|ZP_07348661.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
pneumoniae SP14-BS292]
gi|303265256|ref|ZP_07351167.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
pneumoniae BS397]
gi|303267603|ref|ZP_07353445.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
pneumoniae BS457]
gi|303269940|ref|ZP_07355678.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
pneumoniae BS458]
gi|307067834|ref|YP_003876800.1| ribonucleotide reductase subunit beta [Streptococcus pneumoniae
AP200]
gi|307127225|ref|YP_003879256.1| ribonucleoside-diphosphate reductase subunit beta [Streptococcus
pneumoniae 670-6B]
gi|15458689|gb|AAK99870.1| Nonessential ribonucleoside-diP reductase 2, subunit beta, class I,
function unknown [Streptococcus pneumoniae R6]
gi|116077738|gb|ABJ55458.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae D39]
gi|147755114|gb|EDK62169.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae SP11-BS70]
gi|147760396|gb|EDK67375.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae SP18-BS74]
gi|147922093|gb|EDK73216.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae SP3-BS71]
gi|147924289|gb|EDK75383.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae SP6-BS73]
gi|147929260|gb|EDK80261.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae SP23-BS72]
gi|168995612|gb|ACA36224.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae Hungary19A-6]
gi|172043347|gb|EDT51393.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae CDC1873-00]
gi|182629421|gb|ACB90369.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
pneumoniae CGSP14]
gi|183570430|gb|EDT90958.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae CDC1087-00]
gi|183574343|gb|EDT94871.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae CDC0288-04]
gi|183576617|gb|EDT97145.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae CDC3059-06]
gi|183577169|gb|EDT97697.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae MLV-016]
gi|194356996|gb|ACF55444.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
pneumoniae G54]
gi|225720498|gb|ACO16352.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae 70585]
gi|225724090|gb|ACO19943.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae JJA]
gi|225725515|gb|ACO21367.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae P1031]
gi|301794279|emb|CBW36700.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptococcus pneumoniae INV104]
gi|301800116|emb|CBW32717.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptococcus pneumoniae OXC141]
gi|301801954|emb|CBW34682.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptococcus pneumoniae INV200]
gi|302597474|gb|EFL64568.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae BS455]
gi|302636154|gb|EFL66650.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
pneumoniae SP14-BS292]
gi|302638301|gb|EFL68770.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
pneumoniae SP-BS293]
gi|302640522|gb|EFL70931.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
pneumoniae BS458]
gi|302642869|gb|EFL73174.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
pneumoniae BS457]
gi|302645227|gb|EFL75463.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
pneumoniae BS397]
gi|306409371|gb|ADM84798.1| Ribonucleotide reductase, beta subunit [Streptococcus pneumoniae
AP200]
gi|306484287|gb|ADM91156.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae 670-6B]
gi|332074795|gb|EGI85267.1| ribonucleotide reductase, small chain family protein [Streptococcus
pneumoniae GA41301]
gi|332075112|gb|EGI85583.1| ribonucleotide reductase, small chain family protein [Streptococcus
pneumoniae GA17545]
gi|332200632|gb|EGJ14704.1| ribonucleotide reductase, small chain family protein [Streptococcus
pneumoniae GA41317]
gi|332201651|gb|EGJ15721.1| ribonucleotide reductase, small chain family protein [Streptococcus
pneumoniae GA47368]
gi|332203034|gb|EGJ17102.1| ribonucleotide reductase, small chain family protein [Streptococcus
pneumoniae GA47901]
Length = 320
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|325977861|ref|YP_004287577.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|325177789|emb|CBZ47833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 320
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 63/333 (18%), Positives = 119/333 (35%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+ +E+ ++ +
Sbjct: 7 EAINWNEIEDIIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVF 60
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE-- 144
G +++ + + V AI + P L F E+VH+ ++ I ++L
Sbjct: 61 GGLTLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEA 120
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + + E FY+G
Sbjct: 121 IFEWTNSNDCLQKKAKIINDIYENGDALQKKV---------------ASTFLETFLFYSG 165
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E F++ +
Sbjct: 166 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDNFREWMYDL 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 226 LYQLYENEENYTKSLYDG--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV 282
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G+ ++ D
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMQDD 314
>gi|327489434|gb|EGF21227.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK1058]
Length = 319
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + V V E FY+GF L NK+ +AE
Sbjct: 136 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 241
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|161622513|ref|YP_001595352.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
JS98]
gi|160213819|gb|ABX11158.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
JS98]
Length = 379
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 72/350 (20%), Positives = 137/350 (39%), Gaps = 32/350 (9%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ E + W P EV +
Sbjct: 1 MSTVFN-TTPVDVLVEPMFFGSGLGIARYDIQ--RHKVFEELCEKQLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ A+ +S+P ++ F
Sbjct: 58 DAAQF---NKLPQFQQNIFTNNLKYQSLLDSIQGRAPSAALQALISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS---------- 173
E +HS ++ +I+ +L D ++F+ +I +A +Y + +
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEILLDEAIMKRAESIGRYYDDVIEKTRLYQNALEEY 174
Query: 174 --FTTGTKDADQEFLQDL---FVFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYI 227
F G K A E ++ L E + FY FA + + M G A+ ++I
Sbjct: 175 HEFGEGVKQAKYELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIMEGNAKIMKFI 234
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG 283
RDE LHL +I Q+++ +E +Q++ + E E +A G
Sbjct: 235 ARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNRQEKEWAAHLFKDG 294
Query: 284 F-VGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
GLN + ++ ++ R Q GL P+ T +P+PW+ E ++
Sbjct: 295 TCPGLNTQNMGAFVDYLTVSRMKQCGLPCPITDAPTRHPYPWIREYLNSD 344
>gi|15675308|ref|NP_269482.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes M1 GAS]
gi|21910586|ref|NP_664854.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS315]
gi|28895723|ref|NP_802073.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes SSI-1]
gi|71910937|ref|YP_282487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS5005]
gi|94988801|ref|YP_596902.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS9429]
gi|94992686|ref|YP_600785.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS2096]
gi|306826388|ref|ZP_07459706.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes ATCC 10782]
gi|13622486|gb|AAK34203.1| ribonucleotide diphosphate reductase small subunit [Streptococcus
pyogenes M1 GAS]
gi|21904787|gb|AAM79657.1| putative ribonucleoside-diphosphate reductase 2 beta subunit
[Streptococcus pyogenes MGAS315]
gi|28810972|dbj|BAC63906.1| putative ribonucleotide diphosphate reductase, small subunit
[Streptococcus pyogenes SSI-1]
gi|71853719|gb|AAZ51742.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
pyogenes MGAS5005]
gi|94542309|gb|ABF32358.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
pyogenes MGAS9429]
gi|94546194|gb|ABF36241.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
pyogenes MGAS2096]
gi|304431419|gb|EFM34410.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes ATCC 10782]
Length = 319
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 118/333 (35%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+ E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + V AI + P L F E+VH+ ++ I ++L + E
Sbjct: 60 GGLTLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + E FY+G
Sbjct: 120 IFEWTNNNEFLQEKARIINDIYANGDALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E P + F+ +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEEKYTKTLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G+ + D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313
>gi|262283137|ref|ZP_06060904.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sp. 2_1_36FAA]
gi|262261389|gb|EEY80088.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sp. 2_1_36FAA]
Length = 319
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 63/303 (20%), Positives = 117/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + V V E FY+GF L NK+ +AE
Sbjct: 136 -----IINEIYLNGTA-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYTLYENEEGYTETLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF T NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDTADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|157149762|ref|YP_001450838.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
gordonii str. Challis substr. CH1]
gi|157074556|gb|ABV09239.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
gordonii str. Challis substr. CH1]
Length = 319
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 63/303 (20%), Positives = 117/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + V V E FY+GF L NK+ +AE
Sbjct: 136 -----IINEIYLNGTA-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTETLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF T NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDTADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|149013339|ref|ZP_01834070.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae SP19-BS75]
gi|147762929|gb|EDK69876.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae SP19-BS75]
Length = 320
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKTEIEEIFEWTNTNPYLQKKAEIVN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|328945482|gb|EGG39633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK1087]
Length = 319
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/303 (20%), Positives = 117/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + F E+VH+ ++ I ++L E+F+ P + KA
Sbjct: 79 KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFDWTNTNPYLQKKAE--- 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + + V E FY+GF L NK+ +AE
Sbjct: 136 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 241
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|225860977|ref|YP_002742486.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae Taiwan19F-14]
gi|298229749|ref|ZP_06963430.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298255394|ref|ZP_06978980.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298502819|ref|YP_003724759.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae
TCH8431/19A]
gi|225727952|gb|ACO23803.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pneumoniae Taiwan19F-14]
gi|298238414|gb|ADI69545.1| ribonucleoside-diphosphate reductase [Streptococcus pneumoniae
TCH8431/19A]
gi|327389423|gb|EGE87768.1| ribonucleoside-diphosphate reductase subunit beta nrdF2
[Streptococcus pneumoniae GA04375]
Length = 320
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|221231890|ref|YP_002511042.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
pneumoniae ATCC 700669]
gi|220674350|emb|CAR68896.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptococcus pneumoniae ATCC 700669]
Length = 320
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 EDIRTPHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQKKAEIVN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNMGQDPLFPDSAEDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|94990703|ref|YP_598803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS10270]
gi|94544211|gb|ABF34259.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
pyogenes MGAS10270]
Length = 320
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 118/333 (35%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+ E+ ++ +
Sbjct: 7 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVF 60
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + V AI + P L F E+VH+ ++ I ++L + E
Sbjct: 61 GGLTLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 120
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + E FY+G
Sbjct: 121 IFEWTNNNEFLQEKARIINNIYANGDALQKKV---------------ASTYLETFLFYSG 165
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E P + F+ +
Sbjct: 166 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDL 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 226 LYQLYENEEKYTKTLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 282
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G+ + D
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMSDD 314
>gi|300934659|ref|ZP_07149915.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
resistens DSM 45100]
Length = 332
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/367 (17%), Positives = 132/367 (35%), Gaps = 51/367 (13%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
M ++P + V + + + N++ K W+ N W+P +VP
Sbjct: 1 MTIAESVTP-PKAKYNPRVRIRPI-----NWNKVQDDKDLEVWQ---RLTANFWLPEKVP 51
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ +DL W NGL+D ER + R +++ A ++ +
Sbjct: 52 LSNDLKDW---NGLSDIERTLTMRVFTGLTLLDTMQATVGEISQIQDAQTEHEEAVYTNI 108
Query: 121 AFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
AF ++VH+ ++ + ++L + + + L++
Sbjct: 109 AFMQSVHARSYSSVFSTLANTPSINAAYEWAVNNDVLQQRCRSVLEHYFGED-------- 160
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
V + + Y GF L + A+ + I+RD+++H +
Sbjct: 161 -------PLKRKVSATLLSSVLLYAGFYLPLHFSTRGVLTNTADMIRLILRDKAVHGYYS 213
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
Q +EN T E + + +L + LE+ Y+ E +GL P +++++
Sbjct: 214 GYKF-QRGLENHPERTAELSEFTHALLEKLFELEVLYSAELYE--PLGL-MPDVVKFVKY 269
Query: 299 IANRRCHQIGLEPLF---KYTENPFPWMSEVID-----LKKEKNFFETRVTEYQQG---- 346
AN+ +G P F + +P E++ + +FF + Y G
Sbjct: 270 NANKALMNLGYHPHFAAEETDVSP-----EILSALTPGADENHDFFSGSGSSYIMGKAEE 324
Query: 347 -AELKWD 352
A+ WD
Sbjct: 325 TADTDWD 331
>gi|270291189|ref|ZP_06197412.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus
acidilactici 7_4]
gi|304385474|ref|ZP_07367819.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus
acidilactici DSM 20284]
gi|270280585|gb|EFA26420.1| ribonucleoside-diphosphate reductase, beta subunit [Pediococcus
acidilactici 7_4]
gi|304328681|gb|EFL95902.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus
acidilactici DSM 20284]
Length = 317
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 62/308 (20%), Positives = 114/308 (37%), Gaps = 26/308 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL+ W+ L +D + ++ G ++L + + + A+
Sbjct: 21 WEKLTEQFWLDTRIPISNDLSDWRE---LDEDHQWVVGHVFGGLTLLDTLQSQDGMAALR 77
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + P L F E+VH+ ++ I +L E+F + K +
Sbjct: 78 KDVRTPHETAVLNNIQFMESVHAKSYSSIFETLNTPTEIDEIFEWSDSEEFLQNKTKFIY 137
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
P + V E FY+GF L NK+ +AE
Sbjct: 138 DLYHDDGHPLKKK--------------ISSVFLETFLFYSGFFTPLYYLGHNKLNNVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + +E + L++ E Y H+ +
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGMKDLGENEQQELKDWMYNFLYDLYANEEKYVHKVYDQ- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
VG + ++ AN+ +G +PLF TE NP M+ + +FF
Sbjct: 243 -VGWT-EEVLTFTRYNANKALMNLGQDPLFPDTEADVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEYQQGAE 348
Y+ G
Sbjct: 300 NGYRLGNV 307
>gi|325694009|gb|EGD35927.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK150]
Length = 319
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/303 (20%), Positives = 117/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + F E+VH+ ++ I ++L E+F+ P + KA
Sbjct: 79 KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFDWTNTNPYLQKKAE--- 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + + V E FY+GF L NK+ +AE
Sbjct: 136 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 241
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|19746348|ref|NP_607484.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS8232]
gi|50914444|ref|YP_060416.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS10394]
gi|71903783|ref|YP_280586.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS6180]
gi|94994624|ref|YP_602722.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS10750]
gi|139473584|ref|YP_001128300.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes str. Manfredo]
gi|19748543|gb|AAL97983.1| ribonucleotide diphosphate reductase small subunit [Streptococcus
pyogenes MGAS8232]
gi|50903518|gb|AAT87233.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
pyogenes MGAS10394]
gi|71802878|gb|AAX72231.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
pyogenes MGAS6180]
gi|94548132|gb|ABF38178.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
pyogenes MGAS10750]
gi|134271831|emb|CAM30066.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptococcus pyogenes str. Manfredo]
Length = 319
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 118/333 (35%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+ E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSLQEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + V AI + P L F E+VH+ ++ I ++L + E
Sbjct: 60 GGLTLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + E FY+G
Sbjct: 120 IFEWTNNNEFLQEKARIINNIYANGDALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E P + F+ +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEEKYTKTLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G+ + D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMSDD 313
>gi|324993305|gb|EGC25225.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK405]
gi|324995391|gb|EGC27303.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK678]
gi|325697177|gb|EGD39064.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK160]
gi|327461576|gb|EGF07907.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK1]
gi|327473300|gb|EGF18720.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK408]
Length = 319
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + + V E FY+GF L NK+ +AE
Sbjct: 136 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 241
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|320546423|ref|ZP_08040738.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
equinus ATCC 9812]
gi|320448808|gb|EFW89536.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
equinus ATCC 9812]
Length = 320
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/330 (19%), Positives = 119/330 (36%), Gaps = 32/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ + WE W+ T +P+ +DL W+ L+D E+ ++ + G
Sbjct: 10 NWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVFGGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFN 147
+++ + + V AI + P L F E+VH+ ++ I ++L +F
Sbjct: 64 TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEAIFE 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ + KA + + E FY+GF
Sbjct: 124 WTNKNEFLQKKAKIINDIYENGDALQKKI---------------ASTFLETFLFYSGFFT 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L NK+ +AE + I+RDES+H + E E + +L++
Sbjct: 169 PLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDKQDELRDWMYDLLYQ 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMS 324
E Y VG ++++ AN+ +G +PLF NP M+
Sbjct: 229 LYENEENYTKSLY--DEVGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MN 284
Query: 325 EVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
+ +FF Y G+ +K D
Sbjct: 285 GISTGTSNHDFFSQVGNGYLLGSVEAMKDD 314
>gi|322385107|ref|ZP_08058754.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
cristatus ATCC 51100]
gi|321270731|gb|EFX53644.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
cristatus ATCC 51100]
Length = 321
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 112/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G ++L + + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTLQSESGVDALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ + F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKAEIEEIFEWTNTNPYLQRKAEIIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ S V E FY+GF L NK+ +AE
Sbjct: 139 EIYLNGSPLEKKI---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQEKLKEWMYDLLYTLYENEEGYTESLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|55821276|ref|YP_139718.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
thermophilus LMG 18311]
gi|55823189|ref|YP_141630.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
thermophilus CNRZ1066]
gi|116628014|ref|YP_820633.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
thermophilus LMD-9]
gi|55737261|gb|AAV60903.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus
thermophilus LMG 18311]
gi|55739174|gb|AAV62815.1| ribonucleotide diphosphate reductase beta subunit [Streptococcus
thermophilus CNRZ1066]
gi|116101291|gb|ABJ66437.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Streptococcus thermophilus LMD-9]
gi|312278606|gb|ADQ63263.1| Ribonucleoside-diphosphate reductase class Ib beta subunit
[Streptococcus thermophilus ND03]
Length = 320
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + V AI
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGLTLLDTMQSQTGVEAIR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P L F E+VH+ ++ I ++L E+F + KA
Sbjct: 79 ADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNSNKYLQTKAKIIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ ++ E FY+GF L NK+ +AE
Sbjct: 139 DIYENGTALQKKV---------------ASTYLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + F++ +L++ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEKEQESFREWMYDLLYQLYENEELYTKSLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVMTFLRYNANKALMNLGQDPLFPDSANDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|327468920|gb|EGF14392.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK330]
Length = 319
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/303 (20%), Positives = 115/303 (37%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + + V E FY+GF L NK+ +AE
Sbjct: 136 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLAFNELPEDEQNKLKEWMYDLLYTLYENEEGYTESLY--D 241
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|228476905|ref|ZP_04061550.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
salivarius SK126]
gi|228251479|gb|EEK10624.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
salivarius SK126]
Length = 319
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 110/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + V AI
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGLTLLDTMQSQTGVEAIR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P L F E+VH+ ++ I ++L E+F + KA
Sbjct: 79 ADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNSNEYLQTKAKIIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + E FY+GF L NK+ +AE
Sbjct: 139 DIYENGTPLQKKV---------------ASTYLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + F++ +L++ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQESFREWMYDLLYQLYENEELYTKSLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVMTFLRYNANKALMNLGQDPLFPDSANDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|324990559|gb|EGC22495.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK353]
Length = 319
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + + V E FY+GF L NK+ +AE
Sbjct: 136 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLSFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 241
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|125717616|ref|YP_001034749.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK36]
gi|323352633|ref|ZP_08087603.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis VMC66]
gi|125497533|gb|ABN44199.1| Ribonucleoside-diphosphate reductase 2, beta subunit, putative
[Streptococcus sanguinis SK36]
gi|322121669|gb|EFX93415.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis VMC66]
gi|325688330|gb|EGD30349.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK72]
gi|325690076|gb|EGD32080.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK115]
gi|332363056|gb|EGJ40843.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK355]
Length = 319
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNPYLQKKAE--- 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + + V E FY+GF L NK+ +AE
Sbjct: 136 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 241
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|269123322|ref|YP_003305899.1| Ribonucleoside-diphosphate reductase [Streptobacillus moniliformis
DSM 12112]
gi|268314648|gb|ACZ01022.1| Ribonucleoside-diphosphate reductase [Streptobacillus moniliformis
DSM 12112]
Length = 333
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 69/326 (21%), Positives = 139/326 (42%), Gaps = 18/326 (5%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
++ + + N L Y + W+ TE D+ W S L+ + R
Sbjct: 2 EKKIYKAVNWNTLDN-DYVEV--FWEQNLRQFWIDTEYIPSKDIDSWHS---LSPEMRET 55
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
K+ LG ++L ++ + I H+ + +CR L E++H+ ++ I T++
Sbjct: 56 YKKVLGGLTLLDTLQSHTGMPKIIDHIESLQCRSVLSYMCMMESIHAKSYSTIFTTVAST 115
Query: 142 E--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
E E+F ++ + KAN +Y Q L++P +A + V V E
Sbjct: 116 EEINEIFRWVQDNQYLQFKANKIDEYYQCLNNP-------NATPREIYMALVASVFLESY 168
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
FY+GF L L +MV ++ + I+ DES+H F + +I E + + ++
Sbjct: 169 LFYSGFFLPLWLSGHGQMVASSDIIKKIIADESIHGVFVGKLAQEIFEEMSFVEKESVKK 228
Query: 260 KSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENP 319
+ + +E E+ + E VGL + ++Y+++ N+ +G + F+ E
Sbjct: 229 EIMNLFYELYENELKFTDEIYSD--VGLTSE-VKEYIRYNGNKALMNLGFKEEFEIKEVN 285
Query: 320 FPWMSEVIDLKKEKNFFETRVTEYQQ 345
++ + + +FF + T Y++
Sbjct: 286 AIVLNGLNVETTQHDFFSKKSTNYEK 311
>gi|38234491|ref|NP_940258.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
diphtheriae NCTC 13129]
gi|38200754|emb|CAE50457.1| ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium
diphtheriae]
Length = 341
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/339 (17%), Positives = 119/339 (35%), Gaps = 39/339 (11%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+ K W+ N W+P +VP+ +DL W++ +T R ++ R
Sbjct: 25 NWNRTQDAKDNEVWQ---RLTANFWLPEKVPLSNDLPTWRT---MTPVYRELVTRTFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
++L A+ ++ + AF +AVH+ ++ + +++ E+ + Y
Sbjct: 79 TLLDTLQASVGEISQIPDAHTEHEQAVYANIAFMQAVHARSYSSVFSTMCSS-TEIDDAY 137
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
S A + + V + + Y GF L
Sbjct: 138 TWAISNPLLQRRATRVIEHYYGSD------------PLKRKVASTLLSSLLLYAGFYLPL 185
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
L K++ A+ + I+RD+++H + Q +E E + + ++ E
Sbjct: 186 WLSTRGKLMNTADMIRLILRDKAVHGYYSGYK-YQRGLELKPERANEMAEFTYSLCDELL 244
Query: 270 LLEIAYAHETMP-----KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
+E AY + GL ++ + A++ +G EP ++ +S
Sbjct: 245 DMEKAYTADLYAPADQANALEGLTLDGVMSFVYYNADKALMNLGYEPAYEEQA---AHVS 301
Query: 325 EVIDL------KKEKNFFETRVTEYQQGAELK-----WD 352
I + +FF + Y G + WD
Sbjct: 302 PEIIAALTPESNETHDFFSGSGSAYIIGTAEETTEEDWD 340
>gi|261885428|ref|ZP_06009467.1| ribonucleotide-diphosphate reductase subunit beta [Campylobacter
fetus subsp. venerealis str. Azul-94]
Length = 282
Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats.
Identities = 72/295 (24%), Positives = 122/295 (41%), Gaps = 20/295 (6%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQLLP-LKYGWAWEKYLSACNNHW-----MPTEV 59
I ++D+++ P KY WA L + W P EV
Sbjct: 2 NRKKIYNPSSNETLNDRKVFGGNPHGILTSPKAKYTWA----LKLLGSLWKQIPGFPKEV 57
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
DD+ + LT ++ M S +S NN+ I +++ PE L R
Sbjct: 58 DTTDDVRDYAC--NLTTAKKRMYDLVWSQLISMDSFQTNNLADNINPYITAPEINAILAR 115
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
QA+EEA HS ++ ++ ++ + ++ M + + K ++ + L+
Sbjct: 116 QAYEEANHSKSYAVMVEAICDNTDLIYEMEKYDDVLRKKNDYISSVYEELAGEVTDEKL- 174
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
V + EG++FY+GF I +L RA KM+G A+ ++I RDE HL
Sbjct: 175 -------LLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDEITHLLLFQ 227
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
++IN ++ E P L+T E + K M +A LEI + +G E+
Sbjct: 228 NMINSVRKERPDLFTSEVEAKIYEMFKKAGDLEIEWGKYITGNQIMGFTDDIIEE 282
>gi|288904913|ref|YP_003430135.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus
gallolyticus UCN34]
gi|306830970|ref|ZP_07464132.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|288731639|emb|CBI13196.1| ribonucleoside-diphosphate reductase (minor subunit) [Streptococcus
gallolyticus UCN34]
gi|304426993|gb|EFM30103.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
Length = 320
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 63/333 (18%), Positives = 119/333 (35%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+ +E+ ++ +
Sbjct: 7 EAINWNEIEDIIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVF 60
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE-- 144
G +++ + + V AI + P L F E+VH+ ++ I ++L
Sbjct: 61 GGLTLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEA 120
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + + E FY+G
Sbjct: 121 IFEWTNSNDYLQKKAKIINDIYENGDALQKKV---------------ASTFLETFLFYSG 165
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E F++ +
Sbjct: 166 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDNFREWMYDL 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 226 LYQLYENEENYTKSLYDG--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV 282
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G+ ++ D
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMQDD 314
>gi|312862767|ref|ZP_07723007.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
vestibularis F0396]
gi|322516573|ref|ZP_08069487.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
vestibularis ATCC 49124]
gi|311101627|gb|EFQ59830.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
vestibularis F0396]
gi|322124843|gb|EFX96267.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
vestibularis ATCC 49124]
Length = 320
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 109/303 (35%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ E+ ++ + G +++ + V AI
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSAKEKDLVGKVFGGLTLLDTMQSQTGVEAIR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P L F E+VH+ ++ I ++L E+F + KA
Sbjct: 79 ADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNSNKYLQTKAKIIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + E FY+GF L NK+ +AE
Sbjct: 139 DIYENGTPLQKKV---------------ASTYLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + F++ +L++ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQESFREWMYDLLYQLYENEELYTKSLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVMTFLRYNANKALMNLGQDPLFPDSANDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|332361651|gb|EGJ39455.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK1056]
gi|332365967|gb|EGJ43723.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
sanguinis SK1059]
Length = 319
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 115/303 (37%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ E+ ++ + G ++L + + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSHKEKDLVGKVFGGLTLLDTLQSESGVDALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + F E+VH+ ++ I ++L E+F + KA
Sbjct: 79 KDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEIDEIFAWTNTNSYLQKKAE--- 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + + V E FY+GF L NK+ +AE
Sbjct: 136 -----IINEIYLNGTA-------LEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ ++ +L+ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLLYTLYENEEGYTESLY--D 241
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 242 TVGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|9632793|ref|NP_049841.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage T4]
gi|1172940|sp|P11156|RIR2_BPT4 RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Protein B2; AltName: Full=Ribonucleotide
reductase
gi|5354417|gb|AAD42624.1|AF158101_211 NrdB aerobic NDP reductase, small subunit [Enterobacteria phage T4]
gi|15342|emb|CAA27757.1| small subunit B2 [Enterobacteria phage T4]
gi|299780589|gb|ADJ39951.1| aerobic NDP reductase small subunit [Enterobacteria phage T4T]
Length = 388
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 67/360 (18%), Positives = 132/360 (36%), Gaps = 41/360 (11%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V ++ M + ++ E + W P EV +
Sbjct: 1 MSTVFN-TNPVDVLNEPMFFGSGLGLARYDIQ--RHRVFEELIERQISFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A +Y + +
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLVKTREWENAKDMV 174
Query: 184 EFLQD------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN-KMV 218
E+ +D E + FY FA + + M
Sbjct: 175 EYYKDQGLILADKDVEQRAKRDLMKSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIME 234
Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLEIA 274
G A+ ++I RDE LHL +I Q++ +E +Q++ + E E
Sbjct: 235 GNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQEAVDIFMEVNRQEKD 294
Query: 275 YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLKK 331
+A G GLN S ++ ++ R Q GL P+ ++P+PW+ E ++
Sbjct: 295 WAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYLNSDN 354
>gi|322372696|ref|ZP_08047232.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
sp. C150]
gi|321277738|gb|EFX54807.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
sp. C150]
Length = 319
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 110/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ +E+ ++ + G +++ + V AI
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVFGGLTLLDTMQSQTGVEAIR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P L F E+VH+ ++ I ++L ++F + KA
Sbjct: 79 ADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEDIFEWTNSNEYLQTKAKIIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + E FY+GF L NK+ +AE
Sbjct: 139 DIYENGTPLQKKV---------------ASTFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + F++ +L+E E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEEEQESFREWMYDLLYELYENEELYTKSLYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 -VGWT-EEVMTFLRYNANKALMNLGQDPLFPDSANDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|149408186|ref|YP_001294620.1| hypothetical protein ORF027 [Pseudomonas phage PA11]
Length = 322
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 59/325 (18%), Positives = 113/325 (34%), Gaps = 30/325 (9%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
Y A + + W E+ ++ D+ + +T+ E + L F E +
Sbjct: 13 FDYPEAIQFAKVQSSIFWTDDEINVEKDIQD--IRVNMTEAEAHGVITTLRLFTLYELVA 70
Query: 97 ANNIVL-AIYRHLSNPECRQYLLRQAF-EEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
+ L + + P+ + F E VH+ + I +L L+ E + Y P
Sbjct: 71 GRDYWLGRVLKTFPRPDIERMAATFGFFELNVHAPFYNKINEALMLNTDEFYLAYVNDPI 130
Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
+ + + + P ++ G + + EG Y+ FA +
Sbjct: 131 LKERMEFVDSLVEE-DDPLYSLG--------------AFSMVEGAVLYSSFAFLKHFQAK 175
Query: 215 NK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIE---NPHLWTKEFQQKSRTMLHEAT 269
K ++ + + +RDE+LH G + N +K E + H
Sbjct: 176 GKNKLMNVVRGINFSVRDENLHCEGGAWLYNTLKQEIKSEGGYINPNLEYDLANCAHTIA 235
Query: 270 LLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVI 327
E KG G+ A + +++ N Q+G+EP+F+ + N W + I
Sbjct: 236 EHEFRIVDMIFEKGEMEGITAEQMKTFVKSRVNICLAQLGIEPVFEVSNNIVAEWFYDGI 295
Query: 328 DLKKEKNFFETRVTEYQQGAELKWD 352
+ +FF Y + WD
Sbjct: 296 NGVMFHDFFSGIGNSYNRS----WD 316
>gi|329117318|ref|ZP_08246035.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
parauberis NCFD 2020]
gi|326907723|gb|EGE54637.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
parauberis NCFD 2020]
Length = 321
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 63/327 (19%), Positives = 119/327 (36%), Gaps = 30/327 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLPAKEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + V AI + P L F E+VH+ ++ I ++L + E
Sbjct: 60 GGLTLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F+ + KA + + E FY+G
Sbjct: 120 IFDWTNSNEFLQNKAKIINDIYENGDALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E ++F++ +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEKQEDFKEWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y + VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEENYTKSLYDQ--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE 348
M+ + +FF Y G+
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSV 307
>gi|297243045|ref|ZP_06926983.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD]
gi|296889256|gb|EFH27990.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis AMD]
Length = 364
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 55/331 (16%), Positives = 111/331 (33%), Gaps = 35/331 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N ++ K W N W+P +VP+ +D+ W+S LTD ER R
Sbjct: 55 NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 108
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
++ A L H + AF +++H+ ++ I ++L E E +
Sbjct: 109 TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSEEIDEAYR 168
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ + L ++ + + + Y GF
Sbjct: 169 WAVGNDVLQQRVTTVLCEYESED---------------PLKRKIAATMLSSLLLYAGFYL 213
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM+ A+ + I+RD+++H + + K ++ + +L
Sbjct: 214 PLYFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDT 273
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
LE+ Y+ + + ++ AN+ +G + E +S I
Sbjct: 274 LYDLEVEYSGQIYEGFDFHDDVFDFV---RYNANKALMNLGYPAKYSEEE---THVSPEI 327
Query: 328 ------DLKKEKNFFETRVTEYQQGAELKWD 352
+ +FF + Y G ++ D
Sbjct: 328 LAALSPAADENHDFFSGSGSSYIMGKSVETD 358
>gi|22536982|ref|NP_687833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
agalactiae 2603V/R]
gi|25010891|ref|NP_735286.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
agalactiae NEM316]
gi|76788606|ref|YP_329564.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
agalactiae A909]
gi|76799231|ref|ZP_00781405.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae 18RS21]
gi|77405557|ref|ZP_00782648.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae H36B]
gi|77408849|ref|ZP_00785576.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae COH1]
gi|77413113|ref|ZP_00789313.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae 515]
gi|22533837|gb|AAM99705.1|AE014229_6 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
agalactiae 2603V/R]
gi|23095270|emb|CAD46480.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563663|gb|ABA46247.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
agalactiae A909]
gi|76585414|gb|EAO61998.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae 18RS21]
gi|77160814|gb|EAO71925.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae 515]
gi|77172535|gb|EAO75677.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae COH1]
gi|77175864|gb|EAO78642.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae H36B]
gi|319744839|gb|EFV97177.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
agalactiae ATCC 13813]
Length = 319
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 64/327 (19%), Positives = 116/327 (35%), Gaps = 30/327 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+ E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAQEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + V AI + P L F E+VH+ ++ I ++L E
Sbjct: 60 GGLTLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEE 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA ++ E FY+G
Sbjct: 120 IFEWTNNNEFLQEKARIINDIYANGNALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E P + F+ +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEEKYTKTLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE 348
M+ + +FF Y G+
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSV 307
>gi|306833073|ref|ZP_07466204.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
bovis ATCC 700338]
gi|304424782|gb|EFM27917.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
bovis ATCC 700338]
Length = 320
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 63/333 (18%), Positives = 120/333 (36%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+ +E+ ++ +
Sbjct: 7 EAINWNEIEDIIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAEEKDLVGKVF 60
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE-- 144
G +++ + + V AI + P L F E+VH+ ++ I ++L
Sbjct: 61 GGLTLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEA 120
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + ++ E FY+G
Sbjct: 121 IFEWTNSNDYLQKKAKIINDIYENGNALQKKV---------------ASTFLETFLFYSG 165
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E F++ +
Sbjct: 166 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQDNFREWMYDL 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 226 LYQLYENEENYTKSLYDG--VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV 282
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G+ ++ D
Sbjct: 283 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMQDD 314
>gi|308235083|ref|ZP_07665820.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella
vaginalis ATCC 14018]
gi|311115217|ref|YP_003986438.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella
vaginalis ATCC 14019]
gi|310946711|gb|ADP39415.1| ribonucleotide-diphosphate reductase subunit beta [Gardnerella
vaginalis ATCC 14019]
Length = 364
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 55/331 (16%), Positives = 111/331 (33%), Gaps = 35/331 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N ++ K W N W+P +VP+ +D+ W+S LTD ER R
Sbjct: 55 NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 108
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
++ A L H + AF +++H+ ++ I ++L E E +
Sbjct: 109 TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSEEIDEAYR 168
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ + L ++ + + + Y GF
Sbjct: 169 WAVGNDVLQQRVTTVLCEYESED---------------PLKRKIAATMLSSLLLYAGFYL 213
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM+ A+ + I+RD+++H + + K ++ + +L
Sbjct: 214 PLYFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDT 273
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
LE+ Y+ + + ++ AN+ +G + E +S I
Sbjct: 274 LYDLEVEYSGQIYEGFDFHDDVFDFV---RYNANKALMNLGYPAKYSEEE---THVSPEI 327
Query: 328 ------DLKKEKNFFETRVTEYQQGAELKWD 352
+ +FF + Y G ++ D
Sbjct: 328 LAALSPAADENHDFFSGSGSSYIMGKSVETD 358
>gi|332686050|ref|YP_004455824.1| ribonucleotide reductase of class Ib (aerobic), subunit beta
[Melissococcus plutonius ATCC 35311]
gi|332370059|dbj|BAK21015.1| ribonucleotide reductase of class Ib (aerobic), beta subunit
[Melissococcus plutonius ATCC 35311]
Length = 323
Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats.
Identities = 58/303 (19%), Positives = 110/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W++ L++ E+ G +++ + + + +
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWRT---LSELEKTTFAHVFGGLTLLDTVQSESGIDQLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P L F E+VH+ ++ I ++L + E+FN + KA
Sbjct: 79 KDARTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEEIFNWIDTNQQLQYKAKRVN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + V E FY+GF L NK+ +AE
Sbjct: 139 EIYKHGKPLQKKV---------------ANVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + E + +L+E E Y E
Sbjct: 184 IKLIIRDESVHGTYIGYKFQRGFNGLEEQEQDELKNWMYDLLYELYENEEKYTEELY--D 241
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
+G + ++++ AN+ +G+ PLF NP M+ + +FF
Sbjct: 242 PLGWT-EDVKIFLRYNANKALMNLGMNPLFPDTANDVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|222153355|ref|YP_002562532.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
uberis 0140J]
gi|222114168|emb|CAR42683.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptococcus uberis 0140J]
Length = 319
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 62/322 (19%), Positives = 114/322 (35%), Gaps = 30/322 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+ E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAQEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + V AI + P L F E+VH+ ++ I ++L + E
Sbjct: 60 GGLTLLDTMQSETGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIEE 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + E FY+G
Sbjct: 120 IFEWTNNNEFLQKKAKIINDIYANGDALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E + F++ +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEDKQESFREWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEEEYTKTLY--DPVGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEY 343
M+ + +FF Y
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGY 302
>gi|259907588|ref|YP_002647944.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
pyrifoliae Ep1/96]
gi|224963210|emb|CAX54694.1| Ribonucleoside-diphosphate reductase 2, beta subunit [Erwinia
pyrifoliae Ep1/96]
gi|283477430|emb|CAY73346.1| ribonucleoside-diphosphate reductase 2 beta chain [Erwinia
pyrifoliae DSM 12163]
Length = 319
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 60/330 (18%), Positives = 117/330 (35%), Gaps = 31/330 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W S L +++ + R
Sbjct: 10 NWNKIEDDKDLEVWNRLTSNFWLPEKVPLSNDIPSWNS---LNAEQQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYR 150
+++ A+ + +F EAVH+ ++ I ++L +
Sbjct: 67 DTIQNTLGAPALMADALTQHEEAVMSNISFMEAVHARSYSSIFSTLCNTSDVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + KA LQ+ V E FY+GF +
Sbjct: 127 DNAPLQGKAQIILQHYYHNDPLKKKI---------------ASVFLESFLFYSGFYLPVY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I++DE++H + + + L +E QQ + +L E
Sbjct: 172 WSSRGKLTNTADLIRLIIKDEAVHGYYIGYKYQKALEKETPLRKEELQQFAIELLLELYE 231
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVI 327
E+AY VG ++++ + AN+ +G E LF NP +
Sbjct: 232 NELAYTEALYAG--VGW-QEDVKKFLHYNANKALMNLGYEALFPADMTDVNPAILAALSP 288
Query: 328 DLKKEKNFFETRVTEYQQGAEL-----KWD 352
+ + +FF + Y G + WD
Sbjct: 289 NADENHDFFSGSGSSYVMGKAVDTQDEDWD 318
>gi|283782686|ref|YP_003373440.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella
vaginalis 409-05]
gi|283441437|gb|ADB13903.1| ribonucleoside-diphosphate reductase, beta subunit [Gardnerella
vaginalis 409-05]
Length = 359
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 55/331 (16%), Positives = 111/331 (33%), Gaps = 35/331 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N ++ K W N W+P +VP+ +D+ W+S LTD ER R
Sbjct: 50 NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 103
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
++ A L H + AF +++H+ ++ I ++L E E +
Sbjct: 104 TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSEEIDEAYR 163
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ + L ++ + + + Y GF
Sbjct: 164 WAVGNDVLQQRVTTVLCEYESED---------------PLKRKIAATMLSSLLLYAGFYL 208
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM+ A+ + I+RD+++H + + K ++ + +L
Sbjct: 209 PLYFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDT 268
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
LE+ Y+ + + ++ AN+ +G + E +S I
Sbjct: 269 LYDLEVEYSGQIYEGFDFHDDVFDFV---RYNANKALMNLGYPAKYSEEE---THVSPEI 322
Query: 328 ------DLKKEKNFFETRVTEYQQGAELKWD 352
+ +FF + Y G ++ D
Sbjct: 323 LAALSPAADENHDFFSGSGSSYIMGKSVETD 353
>gi|329767978|ref|ZP_08259489.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341]
gi|328838463|gb|EGF88071.1| ribonucleoside-diphosphate reductase [Gemella haemolysans M341]
Length = 322
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 56/308 (18%), Positives = 111/308 (36%), Gaps = 13/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ TE + D+ W L D ER K+ L ++ + + +
Sbjct: 16 YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKEREAYKKVLAGLTGLDTQQGDKGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H + + E +H+ ++ I TSL + + + VPS + +
Sbjct: 74 SLHTEDMRKQAVYSFMGMMEQIHAKSYSTIFTSLIPSQETDYLLDEWVPSNPE-LQFKAK 132
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ F D + V V E FY+GF L L K+ E
Sbjct: 133 LIEDYYMKLFKPEVPTYDLYMAR---VASVFLESYIFYSGFFYPLYLAGQGKVTTSGEII 189
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DE++H +F ++ + +++ +L + E+ Y +
Sbjct: 190 RKILLDETIHGSFTGFDAQELFKTLTPEEQERAEKEMYKLLLDLYENELKYTKDIY--DE 247
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
+GL + Y+++ ANR +G F+ E NP + ++ + +FF +
Sbjct: 248 IGL-YEDVKDYVEYNANRALANLGYPGYFEDKEINPI--IENAMNTNTKNHDFFSVKGDG 304
Query: 343 YQQGAELK 350
Y ++
Sbjct: 305 YVVSMNVE 312
>gi|32709423|gb|AAP86730.1| NrdB [Enterobacteria phage RB27]
Length = 392
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 67/364 (18%), Positives = 133/364 (36%), Gaps = 45/364 (12%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ + + W P EV +
Sbjct: 1 MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A +Y + + AD
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKTRYWENAKADI 174
Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
E+ ++ E + FY FA + +
Sbjct: 175 EYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234
Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
M G A+ ++I RDE LHL +I Q++ +E +Q++ + E
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDQWVKIAQECEQEAVDIFMEVNR 294
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVI 327
E +A G GLN S ++ ++ R Q GL P+ ++P+PW+ E +
Sbjct: 295 QEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYL 354
Query: 328 DLKK 331
+
Sbjct: 355 NSDN 358
>gi|309800432|ref|ZP_07694593.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
infantis SK1302]
gi|308115948|gb|EFO53463.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
infantis SK1302]
Length = 319
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 115/303 (37%), Gaps = 28/303 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L++ E+ ++ + G +++ + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLSNKEKDLVGKVFGGLTLLDTMQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L E+F P + KA
Sbjct: 79 ADIRTPHEEAVYN-IQFMESVHAKSYSSIFSTLNTKSEIEEIFEWTNTNPYLQKKAE--- 134
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + GT + V V E FY+GF L NK+ +AE
Sbjct: 135 -----IINEIYLNGTP-------LEKKVASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 182
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ + +L+ E Y
Sbjct: 183 IKLIIRDESVHGTYIGYKFQLGFNELPEDEQEKLKDWMYDLLYTLYENEEGYTESLYDG- 241
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 242 -VGWT-EEVKTFLRYNANKALMNLGQDPLFPDSADDVNPIV-MNGISTGTSNHDFFSQVG 298
Query: 341 TEY 343
Y
Sbjct: 299 NGY 301
>gi|227502192|ref|ZP_03932241.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
49725]
gi|227077016|gb|EEI14979.1| ribonucleoside-diphosphate reductase [Corynebacterium accolens ATCC
49725]
Length = 337
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 57/333 (17%), Positives = 119/333 (35%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D W + + ER + R
Sbjct: 28 NWNRIWDDKDLEVWN---RLTSNFWLPEKVPLSNDRNDW---SCMDPAERDLTIRVFTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A ++ + AF +AVH+ ++ I ++L E + +
Sbjct: 82 TLLDTVQATVGEISQIQDARTEHEEAVYTNIAFMQAVHARSYSSIFSTLASTEEIEKSYA 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ P + +A + + V + + Y GF
Sbjct: 142 WAVDNPVLQQRATSVMVHYYGDD---------------PLKRKVASTLLSSLLLYAGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L K+ A+ + I+RD+++H + + +E ++ + ++ +
Sbjct: 187 PLHFSVHGKLTNTADMIRLILRDKAVHGYYSGYKFQRGLDHATEARREEMREFTFDLVRK 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
LE+ Y+ E GL ++++ AN+ +G LF Y E NP +
Sbjct: 247 LYDLEMRYSGELYEPY--GL-MDDVATFVRYNANKALMNLGYPNLFPYEECQVNPKILAA 303
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK-----WD 352
+ +FF + Y G ++ WD
Sbjct: 304 LTPGSDENHDFFSGSGSSYIIGKAVETSDADWD 336
>gi|228475302|ref|ZP_04060026.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
hominis SK119]
gi|228270678|gb|EEK12092.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
hominis SK119]
Length = 322
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 67/308 (21%), Positives = 119/308 (38%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ LT+DE+ KR L ++ A++ + I
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLI 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + E +H+ ++ +I T+L + + V
Sbjct: 73 MLHTTDLRKKAVYSFMQMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPH----LKY 128
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ + S K+A V V E FY+GF L L KM E
Sbjct: 129 KSDKIISNYHKLWGKEASIFDQYMARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E ++ ++ +L E E++Y H
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSENEKQKADKEMYKLLEELYKNEVSYTHMLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
+GL Y+Q+ N+ +G EP F+ E NP + +D K +FF +
Sbjct: 247 IGLT-EDVLNYVQYNGNKALSNLGFEPYFEEKEFNPI--IENALDTSTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YTLALNVE 311
>gi|313884792|ref|ZP_07818546.1| ribonucleoside-diphosphate reductase, beta subunit [Eremococcus
coleocola ACS-139-V-Col8]
gi|312619991|gb|EFR31426.1| ribonucleoside-diphosphate reductase, beta subunit [Eremococcus
coleocola ACS-139-V-Col8]
Length = 363
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 58/303 (19%), Positives = 107/303 (35%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L+ E+ M+ + G +++ + + +
Sbjct: 23 WEKLTEQFWLDTRIPVSNDLDDWR---RLSKAEQDMVGKVFGGLTLLDTVQSEQGAIVLL 79
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
R L F E+VH+ ++ I +L + +F I K++
Sbjct: 80 PDARTSHERSVLSNIHFMESVHAKSYSTIFITLNTNAEIDAIFEWTDTHELIQFKSDKIN 139
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ QT + V+ E FY+GF L NK+ +AE
Sbjct: 140 RIYQTGTPLQKK---------------AASVLLESFLFYSGFYAPLWYLGNNKLPNVAEI 184
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + +E +Q + E E Y
Sbjct: 185 IKLILRDESVHGTYIGYKFQLGYNALSETDQEELKQWVFNLCFELYSNEEKYTSYIY--D 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRV 340
+G ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 ELGWT-EEVNTFVRYNANKALQNLGFDPLFADTAEDVNPIV-MNGISTGTSNHDFFSQVG 300
Query: 341 TEY 343
Y
Sbjct: 301 NGY 303
>gi|328957625|ref|YP_004375011.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
sp. 17-4]
gi|328673949|gb|AEB29995.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
sp. 17-4]
Length = 320
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 60/318 (18%), Positives = 117/318 (36%), Gaps = 28/318 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + + WE W T +P+ +DL W L +E+ M+ + G
Sbjct: 9 NWNNIEDMIDKLTWE---KLVEQFWTDTRIPLSNDLDDW---ARLPKNEKDMVGKVFGGL 62
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
++L + + V ++ + + F E++H+ ++ I ++L + E+F
Sbjct: 63 TLLDTLQSQDGVQSLKQSIRTQHEEAVYNNIQFMESMHAKSYSAIFSTLNSKLEIDEIFQ 122
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ KA+ + V+ E FY+GF
Sbjct: 123 WTNTDELLQLKASTINDIYHNGTDLQRKV---------------ASVMLESFLFYSGFFA 167
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L NK+ +AE + I+RDES+H + + P +E + + +L +
Sbjct: 168 PLHYLGNNKLPNVAEIIKLILRDESVHGTYIGYKFQIAFNQLPDDEKEEIKNWTYELLFK 227
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325
E+ YA +G + ++++ AN+ +G +PLF T N M+
Sbjct: 228 LYQNEVKYAEYLY--DEIGWT-ERVKVFLRYNANKALQNLGFDPLFPDTANDVDPVIMNG 284
Query: 326 VIDLKKEKNFFETRVTEY 343
+ +FF Y
Sbjct: 285 ISTGTSNHDFFSQVGNGY 302
>gi|314936969|ref|ZP_07844316.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
hominis subsp. hominis C80]
gi|313655588|gb|EFS19333.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
hominis subsp. hominis C80]
Length = 322
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 67/308 (21%), Positives = 119/308 (38%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ LT+DE+ KR L ++ A++ + I
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLI 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + E +H+ ++ +I T+L + + V
Sbjct: 73 MLHTTDLRKKAVYSFMQMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPH----LKY 128
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ + S K+A V V E FY+GF L L KM E
Sbjct: 129 KSDKIISNYHKLWGKEASIFDQYMARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E ++ ++ +L E E++Y H
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSENEKQKADKEMYKLLEELYKNEVSYTHMLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
+GL Y+Q+ N+ +G EP F+ E NP + +D K +FF +
Sbjct: 247 IGLT-EDVLNYVQYNGNKALSNLGFEPYFEEKEFNPI--IENALDTSTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YTLALNVE 311
>gi|77410697|ref|ZP_00787056.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae CJB111]
gi|77163233|gb|EAO74185.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae CJB111]
Length = 319
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 63/327 (19%), Positives = 116/327 (35%), Gaps = 30/327 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+ E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAQEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + + AI + P L F E+VH+ ++ I ++L E
Sbjct: 60 GGLTLLDTMQSETGIEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEE 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA ++ E FY+G
Sbjct: 120 IFEWTNNNEFLQEKARIINDIYANGNALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E P + F+ +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEDEQENFRDWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEEKYTKTLYDG--VGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE 348
M+ + +FF Y G+
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSV 307
>gi|328768069|gb|EGF78116.1| hypothetical protein BATDEDRAFT_37293 [Batrachochytrium
dendrobatidis JAM81]
Length = 356
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 42/312 (13%), Positives = 107/312 (34%), Gaps = 8/312 (2%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ D+ +L L P+++ W+ Y + N W EV M DDL ++ L+
Sbjct: 13 DTTDEPLLKPNPRRFVLFPIQFNEIWQAYKNLEANFWSAEEVEMSDDLNGFEQ---LSRK 69
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E+ ++ + L I+ + PE R + Q ++ +HS I+
Sbjct: 70 EQSLMLQITSILCMGCGLNNEAILSRYSDEIQIPEARCFFGFQLMQKNIHSELSMVILDM 129
Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
E + ++ + + ++ W ++ + Q + +
Sbjct: 130 FSESEKQRDDLLDVIQQLPSRTMWTEWARTHMTRSEEPFALRVTSLAIFQA-IHQVSLRD 188
Query: 198 GMWFYTGF---AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+ F G ++ ++ + G+ I D+ +L+F + + +
Sbjct: 189 IIAFIAGPETSTLPVTSSESHLLHGVVHAMHKIHHDQLQYLSFLALIQSNLVRRADTQLV 248
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK 314
+ + H + + + + + ++F+ + +G ++
Sbjct: 249 HLMARAAVAAEHTLIDDVFNLSTGNILLCGKIVPKEALKGRIEFLTDMCLTTMGYPAMYH 308
Query: 315 YTENPFPWMSEV 326
++P PW+S +
Sbjct: 309 V-QDPIPWISVL 319
>gi|291290450|dbj|BAI83245.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
AR1]
Length = 392
Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 67/364 (18%), Positives = 133/364 (36%), Gaps = 45/364 (12%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ + + W P EV +
Sbjct: 1 MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A +Y + + AD
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKTRYWENAKADI 174
Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
E+ ++ E + FY FA + +
Sbjct: 175 EYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234
Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
M G A+ ++I RDE LHL +I Q++ +E +Q++ + E
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDQWVKIAQECEQEAVDIFMEVNR 294
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVI 327
E +A G GLN S ++ ++ R Q GL P+ ++P+PW+ E +
Sbjct: 295 QEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYL 354
Query: 328 DLKK 331
+
Sbjct: 355 NSDN 358
>gi|190896432|gb|ACE96729.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896434|gb|ACE96730.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896436|gb|ACE96731.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896438|gb|ACE96732.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896440|gb|ACE96733.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896444|gb|ACE96735.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896446|gb|ACE96736.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896448|gb|ACE96737.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896450|gb|ACE96738.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896452|gb|ACE96739.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896454|gb|ACE96740.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896456|gb|ACE96741.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896458|gb|ACE96742.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896460|gb|ACE96743.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896462|gb|ACE96744.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896464|gb|ACE96745.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896466|gb|ACE96746.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896468|gb|ACE96747.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896470|gb|ACE96748.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896472|gb|ACE96749.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896474|gb|ACE96750.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896476|gb|ACE96751.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896478|gb|ACE96752.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896482|gb|ACE96754.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896484|gb|ACE96755.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896486|gb|ACE96756.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896488|gb|ACE96757.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896492|gb|ACE96759.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896494|gb|ACE96760.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896496|gb|ACE96761.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896498|gb|ACE96762.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896500|gb|ACE96763.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896502|gb|ACE96764.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896504|gb|ACE96765.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896506|gb|ACE96766.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 213
Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 27/237 (11%)
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
DL W+ LT DE+ I L FFA+S+ +V NI + + E R + Q
Sbjct: 1 DLGHWE---NLTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57
Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
E +HS + ++ + D E LF+ VP + KA WAL++ D
Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI-------------D 104
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ F + L + EG++F F I L + M G+ + I RDE LH +F
Sbjct: 105 GGESFAERLIA-FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ + ++ + +++ + ++ EA +E + +++P VG+N QY++
Sbjct: 164 LYSLLRKKLS-------EERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213
>gi|149277655|ref|ZP_01883795.1| ribonucleotide-diphosphate [Pedobacter sp. BAL39]
gi|149231343|gb|EDM36722.1| ribonucleotide-diphosphate [Pedobacter sp. BAL39]
Length = 327
Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 68/307 (22%), Positives = 129/307 (42%), Gaps = 17/307 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ TE D+ WKS L+ + + + KR LG ++L ++ + +
Sbjct: 20 FWEQNLRQFWVDTEYIPSKDIDSWKS---LSPEIQQVYKRALGGLTLLDTLQSHTGMPKL 76
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
H+ + + L EA+H+ ++ I T++ ELF+ + KA+
Sbjct: 77 LDHIDGLQNKAVLSFMCMMEAIHAKSYSTIFTTVNSTPEINELFDWVENNKLLQFKASTI 136
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+Y + L P + V+ E FY+GF L L +MV A+
Sbjct: 137 DKYYRALDVPKVSNEVL-------FMGLAASVLLESFLFYSGFFMPLWLAGQGQMVASAD 189
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
+ I+ DES+H F + + + P+ ++ + K +L E E+ Y E
Sbjct: 190 IIKKIVADESIHGVFVGLLAQDVYKKLPNP--EKCKAKLEALLMELYENELKYTDELY-- 245
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTE 342
VGL A ++Y+++ AN+ +G E LF+ ++ + + +FF + T
Sbjct: 246 TEVGLTAE-VKEYVRYNANKAMMNLGFEELFEVKPINAIVLNGLNVETTQHDFFSKKSTN 304
Query: 343 YQQGAEL 349
Y++ E+
Sbjct: 305 YEKSMEV 311
>gi|255018022|ref|ZP_05290148.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes FSL F2-515]
Length = 267
Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 15/266 (5%)
Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--LDE 142
+G A+ +S I I ++++P A +E +H+ ++ Y++ S+ ++
Sbjct: 2 IIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQ 60
Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
+F + R P+I + + + + E L + + EG+ FY
Sbjct: 61 NRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGINFY 112
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
+GFA +L R NKM G + +I RDE H F +VI I ENP L T+E + +
Sbjct: 113 SGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTH 172
Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFP 321
A LE ++ E + +G G++ Y+++ AN+ +G+ L+ +++N
Sbjct: 173 EAFRHAVELETEWSEEVL-QGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMT 231
Query: 322 WMSEVID--LKKEKNFFETRVTEYQQ 345
W+ D + + +FFE R + Y++
Sbjct: 232 WIKAYADNFTETKTDFFEMRNSSYKK 257
>gi|228861159|ref|YP_002854182.1| ribonucleotide reductase B subunit [Enterobacteria phage RB51]
gi|227438833|gb|ACP31145.1| ribonucleotide reductase B subunit [Enterobacteria phage RB51]
Length = 392
Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 68/364 (18%), Positives = 134/364 (36%), Gaps = 45/364 (12%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ + + W P EV +
Sbjct: 1 MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A +Y + + AD
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMKRAESIGRYYDDVIEKTRYWQNAKADI 174
Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
E+ ++ E + FY FA + +
Sbjct: 175 EYQKEINADEDDIKDAIEHEMYWKRELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234
Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
M G A+ ++I RDE LHL +I Q+++ KE +Q++ + E
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAKECEQEAVDIFMEVNR 294
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVI 327
E +A G GLN S ++ ++ R Q GL P+ ++P+PW+ E +
Sbjct: 295 QEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYL 354
Query: 328 DLKK 331
+
Sbjct: 355 NSDN 358
>gi|152991848|ref|YP_001357569.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp.
NBC37-1]
gi|151423709|dbj|BAF71212.1| ribonucleoside-diphosphate reductase, beta subunit [Sulfurovum sp.
NBC37-1]
Length = 337
Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 72/348 (20%), Positives = 146/348 (41%), Gaps = 24/348 (6%)
Query: 6 GLSPIQAGEKRVNVDDKRMLNARSDVNQ-LLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+ + + D+++ KY W Y N W P+EV +
Sbjct: 2 DVKHYYNPQGE-EILDEKIYGGSPTGFVDFNRSKYRWDSNIYDLMNANTWFPSEVNTSTE 60
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
++ LTD+E+ + K + ++S + R +N + + Q +E
Sbjct: 61 KKNFE---ALTDNEQSIYKMTFAQLSFNDS-AQEEYLSDFRRLANNRLVKSVISLQIMQE 116
Query: 125 AVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQE 184
HS ++ ++ + G E E+FN+Y+ ++ K + F +
Sbjct: 117 VNHSKSYAVLLDACGNSE-EVFNLYKYDAALNKK--------NLQVAEQFAKYIDGGSAD 167
Query: 185 FLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE-SLHLNFGIDVIN 243
+ + V EG++F GF+ I LG +K+ G + ++I RDE + HL ++
Sbjct: 168 KMLLSAMASVNLEGIYFLLGFSYIYLLG--DKVPGARDMIKFIARDELNTHLPLFANIFK 225
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANR 302
I+ EN + M+ +A +E+ Y H + + +G+ EQ + AN
Sbjct: 226 TIQKEN--NIATSTIDAAYKMIQDAVKIELEYGHYLLDQFPIMGVTHELMEQTVYNYAND 283
Query: 303 RCHQIGLEPLFKYTENPF--PWMSEVIDLKK-EKNFFETRVTEYQQGA 347
R +IGL+P+F + + +++ +++ + + NFFE+ V+ Y + +
Sbjct: 284 RLKKIGLDPIFDESATTYLQKLVTKHLEMNEVKSNFFESNVSNYAKSS 331
>gi|32709431|gb|AAP86734.1| NrdB [Enterobacteria phage T2H]
Length = 392
Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats.
Identities = 68/364 (18%), Positives = 134/364 (36%), Gaps = 45/364 (12%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ + + W P EV +
Sbjct: 1 MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A +Y + + AD
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMKRAESIGRYYDDVIEKTRYWQNAKADI 174
Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
E+ ++ E + FY FA + +
Sbjct: 175 EYKKEINADEDDIKDAIEHEMYWKRELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234
Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
M G A+ ++I RDE LHL +I Q+++ KE +Q++ + E
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAKECEQEAVDIFMEVNR 294
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVI 327
E +A G GLN S ++ ++ R Q GL P+ ++P+PW+ E +
Sbjct: 295 QEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYL 354
Query: 328 DLKK 331
+
Sbjct: 355 NSDN 358
>gi|259046997|ref|ZP_05737398.1| ribonucleoside-diphosphate reductase 2, beta subunit
[Granulicatella adiacens ATCC 49175]
gi|259036316|gb|EEW37571.1| ribonucleoside-diphosphate reductase 2, beta subunit
[Granulicatella adiacens ATCC 49175]
Length = 346
Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 64/346 (18%), Positives = 124/346 (35%), Gaps = 38/346 (10%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEK-----------YLSACNNHWMPTEVPMQDDLAL 67
+ KR N N P++Y A + + W+ T +P+ +DL
Sbjct: 11 MSTKRYFNEILSQNSTQPVEYYKAIDWNQVEDMIDKLTWEKLTEQFWLDTRIPVSNDLDD 70
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
W++ L+ E+ ++ + G ++L + + ++ F E+VH
Sbjct: 71 WRT---LSPAEKDVVGKVFGGLTLLDTLQSEEGASLMKDYVRTQHEEAVWNNIQFMESVH 127
Query: 128 SHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEF 185
+ ++ I ++L ++F + KA + Q+
Sbjct: 128 AKSYSTIFSTLHTKAEIEDIFEWTNNNEYLQFKAKKINEIYQSKD--------------- 172
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQI 245
+ V + E FY+GF L NK+ +AE + I+RDES+H + Q
Sbjct: 173 ALKMKVASTMLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYTGYKFQQG 232
Query: 246 KIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCH 305
E +E + + E E+ Y + VG + ++++ AN+
Sbjct: 233 YNELSEQEQEEMKMWVYNLCLELYQNEVKYTQSIYDQ--VGWT-EKVKVFIRYNANKALQ 289
Query: 306 QIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+G +PLF +P M+ + +FF Y G+
Sbjct: 290 NLGFDPLFPDTAEDVDPIV-MNGISTGTSNHDFFSQVGNGYLLGSV 334
>gi|306834752|ref|ZP_07467817.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
accolens ATCC 49726]
gi|304569364|gb|EFM44864.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
accolens ATCC 49726]
Length = 337
Score = 126 bits (315), Expect = 8e-27, Method: Composition-based stats.
Identities = 57/333 (17%), Positives = 119/333 (35%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D W + + ER + R
Sbjct: 28 NWNRIWDDKDLEVWN---RLTSNFWLPEKVPLSNDRNDW---SRMDPAERDLTIRVFTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A ++ + AF +AVH+ ++ I ++L E + +
Sbjct: 82 TLLDTVQATVGEISQIQDARTEHEEAVYTNIAFMQAVHARSYSSIFSTLASTEEIEKSYA 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ P + +A + + V + + Y GF
Sbjct: 142 WAVDNPVLQQRATSVMVHYYGDD---------------PLKRKVASTLLSSLLLYAGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L K+ A+ + I+RD+++H + + +E ++ + ++ +
Sbjct: 187 PLHFSVHGKLTNTADMIRLILRDKAVHGYYSGYKFQRGLDHATEDRREEMREFTFDLVRK 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
LE+ Y+ E GL ++++ AN+ +G LF Y E NP +
Sbjct: 247 LYDLEMRYSGELYEPY--GL-MDDVATFVRYNANKALMNLGYPNLFPYEECQVNPKILAA 303
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELK-----WD 352
+ +FF + Y G ++ WD
Sbjct: 304 LTPGSDENHDFFSGSGSSYIIGKAVETSDADWD 336
>gi|190896480|gb|ACE96753.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 213
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 105/237 (44%), Gaps = 27/237 (11%)
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
DL W+ LT DE+ I L FFA+S+ +V NI + + E R + Q
Sbjct: 1 DLGHWE---NLTPDEKHFISHVLAFFAASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57
Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
E +HS + ++ + D E LF+ VP + KA WAL++ D
Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI-------------D 104
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ F + L + EG++F F I L + M G+ + I RDE LH +F
Sbjct: 105 GGESFAERLIA-FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ + ++ + +++ + ++ EA +E + +++P VG+N QY++
Sbjct: 164 LYSLLRKKLG-------EERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213
>gi|190896442|gb|ACE96734.1| ribonucleotide reductase beta subunit [Populus tremula]
gi|190896490|gb|ACE96758.1| ribonucleotide reductase beta subunit [Populus tremula]
Length = 213
Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats.
Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 27/237 (11%)
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
DL W+ LT DE+ I L FF +S+ +V NI + + E R + Q
Sbjct: 1 DLGHWE---NLTPDEKHFISHVLAFFVASDGIVLENIAGRFMKEVQVSEARAFYGFQIAI 57
Query: 124 EAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
E +HS + ++ + D E LF+ VP + KA WAL++ D
Sbjct: 58 ENIHSEMYSLLLETYIKDSTEKNRLFHAIETVPCVAKKAEWALRWI-------------D 104
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
+ F + L + EG++F F I L + M G+ + I RDE LH +F
Sbjct: 105 GGESFAERLIA-FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 163
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ + ++ + +++ + ++ EA +E + +++P VG+N QY++
Sbjct: 164 LYSLLRKKLS-------EERVKGIVKEAVEIEREFVVDSLPCALVGMNGELMSQYIE 213
>gi|260889741|ref|ZP_05901004.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
hofstadii F0254]
gi|260860347|gb|EEX74847.1| ribonucleoside-diphosphate reductase, beta subunit [Leptotrichia
hofstadii F0254]
Length = 335
Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats.
Identities = 64/306 (20%), Positives = 126/306 (41%), Gaps = 19/306 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ TE D+ W S L +L LG ++L ++ + I
Sbjct: 23 FWEQNLKQFWIDTEYIPSKDIDSWNS---LEPAMKLAYLHVLGGLTLLDTLQSHTGMPKI 79
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
H+ + + R L E +H+ ++ I T++ E F +E P + KAN
Sbjct: 80 IDHIESLQNRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFRWVQENPHLQYKANKI 139
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y Q +++P +A + + V E FY+GF L L +MV +
Sbjct: 140 DAYYQKMNNP-------EASKREIAMALAASVYLETYLFYSGFFLPLWLAGQGEMVASCD 192
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
+ I+ DES+H F + ++ + + + + ++++ E Y E
Sbjct: 193 IIKKIIADESIHGVFVGLLFQELYNSFSEEEKADMRAELKKLMYDLYENETRYTDEIY-- 250
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETRV 340
G +GL ++Y+++ AN+ +G E F+ NP + ++++ + +FF +
Sbjct: 251 GDLGLT-GDVKEYIRYNANKALMNLGFEEEFEVKNVNPI--VLNGLNVETTQHDFFSKKS 307
Query: 341 TEYQQG 346
T Y++
Sbjct: 308 TNYEKA 313
>gi|298253146|ref|ZP_06976938.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1]
gi|297532541|gb|EFH71427.1| ribonucleotide reductase, beta subunit [Gardnerella vaginalis 5-1]
Length = 331
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/331 (16%), Positives = 111/331 (33%), Gaps = 35/331 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N ++ K W N W+P +VP+ +D+ W+S LTD ER R
Sbjct: 22 NWNNIVDDKDLDVWN---RLIANFWLPEKVPLSNDIPSWRS---LTDLERKTTTRVFTGL 75
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
++ A L H + AF +++H+ ++ I ++L E E +
Sbjct: 76 TLLDTSQATIGELCQIEHARTEHEQAIYTNIAFMQSIHARSYSSIFSTLCSSEEIDEAYR 135
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ + L ++ + + + Y GF
Sbjct: 136 WAVGNDVLQQRVTTVLCEYESED---------------PLKRKIAATMLSSLLLYAGFYL 180
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM+ A+ + I+RD+++H + + K ++ + +L
Sbjct: 181 PLYFASRGKMMNTADMIRLILRDKAIHGYYSGYKFQRGLELRSENDKKNLEKFTMNLLDT 240
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
LE+ Y+ + + ++ AN+ +G + E +S I
Sbjct: 241 LYDLEVEYSGQIYEGFDFHDDVFDFV---RYNANKALMNLGYPAKYSEEE---THVSPEI 294
Query: 328 ------DLKKEKNFFETRVTEYQQGAELKWD 352
+ +FF + Y G ++ D
Sbjct: 295 LAALSPAADENHDFFSGSGSSYIMGKSVETD 325
>gi|24379140|ref|NP_721095.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
mutans UA159]
gi|290580850|ref|YP_003485242.1| putative ribonucleotide reductase small subunit [Streptococcus
mutans NN2025]
gi|24377045|gb|AAN58401.1|AE014910_5 putative ribonucleotide reductase, small subunit [Streptococcus
mutans UA159]
gi|254997749|dbj|BAH88350.1| putative ribonucleotide reductase small subunit [Streptococcus
mutans NN2025]
Length = 319
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 63/327 (19%), Positives = 117/327 (35%), Gaps = 30/327 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+ E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAAEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE-- 144
G +++ + + V AI + P L F E+VH+ ++ I ++L
Sbjct: 60 GGLTLLDTMQSQSGVEAIRGDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEG 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + + ++ E FY+G
Sbjct: 120 IFEWTNNNEYLQKKAKIINEIYENGNALQKKV---------------ASTFLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E EF+ +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQSEFRDWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEELYTQTLY--DPVGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGAE 348
M+ + +FF Y G+
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSV 307
>gi|241888586|ref|ZP_04775893.1| ribonucleoside-diphosphate reductase, beta subunit [Gemella
haemolysans ATCC 10379]
gi|241864609|gb|EER68984.1| ribonucleoside-diphosphate reductase, beta subunit [Gemella
haemolysans ATCC 10379]
Length = 322
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/308 (18%), Positives = 112/308 (36%), Gaps = 13/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ TE + D+ W L D ER K+ L ++ + + +
Sbjct: 16 YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKEREAYKKVLAGLTGLDTQQGDKGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H + + E +H+ ++ I TSL + + + VPS + +
Sbjct: 74 SLHTEDMRKQAVYSFMGMMEQIHAKSYSTIFTSLIPSQETDYLLDEWVPSNPE-LQYKAK 132
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ F D + V V E FY+GF L L K+ E
Sbjct: 133 LIEDYYMKLFKPEVPTYDLYMAR---VASVFLESYIFYSGFFYPLYLAGQGKVTTSGEVI 189
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DE++H +F ++ + +++ +L + E+ Y + +
Sbjct: 190 RKILLDETIHGSFTGFDAQEVFKTLTAEEQERAEKEMYKLLLDLYENELVYTKDIYSE-- 247
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
+GL + Y+++ ANR +G F+ E NP + ++ + +FF +
Sbjct: 248 IGL-YEEVKDYVEYNANRALANLGYPGYFEDKEINPI--IENAMNTNTKNHDFFSVKGDG 304
Query: 343 YQQGAELK 350
Y ++
Sbjct: 305 YVVSMNVE 312
>gi|332523715|ref|ZP_08399967.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
porcinus str. Jelinkova 176]
gi|332314979|gb|EGJ27964.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
porcinus str. Jelinkova 176]
Length = 319
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/333 (19%), Positives = 123/333 (36%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+D E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + V AI + P L F E+VH+ ++ I ++L + +
Sbjct: 60 GGLTLLDTMQSETGVEAIRADIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIED 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA ++ E FY+G
Sbjct: 120 IFEWTNNNEFLQKKAKIINDIYANGNALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E + F++ +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQESFREWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E +Y + VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEESYTKTLYDQ--VGWTDEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G+ ++ D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMQDD 313
>gi|257125877|ref|YP_003163991.1| ribonucleoside-diphosphate reductase [Leptotrichia buccalis
C-1013-b]
gi|257049816|gb|ACV39000.1| Ribonucleoside-diphosphate reductase [Leptotrichia buccalis
C-1013-b]
Length = 335
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/306 (20%), Positives = 126/306 (41%), Gaps = 19/306 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ TE D+ W S L +L LG ++L ++ + I
Sbjct: 22 FWEQNLKQFWIDTEYIPSKDIDSWNS---LEPAMKLAYLHVLGGLTLLDTLQSHTGMPKI 78
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
H+ + + R L E +H+ ++ I T++ E F +E P + KAN
Sbjct: 79 IDHIESLQNRSVLSYMCMMETIHAKSYSTIFTTVASTREINETFRWVQENPHLQYKANKI 138
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y Q +++P +A + + V E FY+GF L L +MV +
Sbjct: 139 DTYYQKMNNP-------EASKRDIAMALAASVYLETYLFYSGFFLPLWLAGQGEMVASCD 191
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
+ I+ DES+H F + ++ + + + + ++++ E Y E
Sbjct: 192 IIKKIIADESIHGVFVGLLFQELYNSFSEEEKADMRAELKKLMYDLYENETRYTDEIY-- 249
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETRV 340
G +GL ++Y+++ AN+ +G E F+ NP + ++++ + +FF +
Sbjct: 250 GDLGLTGN-VKEYIRYNANKALMNLGFEEEFEVKNVNPI--VLNGLNVETTQHDFFSKKS 306
Query: 341 TEYQQG 346
T Y++
Sbjct: 307 TNYEKA 312
>gi|73663294|ref|YP_302075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
gi|72495809|dbj|BAE19130.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 322
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 65/308 (21%), Positives = 120/308 (38%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ LTD E+ K+ L ++ A++ + I
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LTDPEKEAFKKALAGLTGLDTHQADDGMPLI 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + A E +H+ ++ +I T+L + + + V
Sbjct: 73 MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDKWVIEEPH----LKY 128
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ + + K+A V V E FY+GF L L KM E
Sbjct: 129 KSDKIINNYHKLWGKEASIYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E + Q+ +L + E+AY H
Sbjct: 189 RKILLDESIHGVFTGMDAQSLRNELSESEKLQADQEMYKLLDDLYKNEVAYTHSLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
+GL A Y+++ N+ +G +P F+ E NP + +D + +FF +
Sbjct: 247 IGL-AEDVLNYVRYNGNKALSNLGFDPYFEEREFNPI--IENALDTTTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YTLALNVE 311
>gi|219681363|ref|YP_002456127.1| putative ribonucleoside diphosphate reductase beta chain [Erwinia
phage phiEa21-4]
gi|327198492|ref|YP_004327080.1| ribonucleoside diphosphate reductase beta chain [Erwinia phage
phiEa104]
gi|199580630|gb|ACH89017.1| putative ribonucleoside diphosphate reductase beta chain [Erwinia
phage phiEa21-4]
gi|311875188|emb|CBX44448.1| ribonucleoside diphosphate reductase beta chain [Erwinia phage
phiEa104]
Length = 365
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 63/324 (19%), Positives = 129/324 (39%), Gaps = 13/324 (4%)
Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
Y ++ Y W EV +++ +++ E + NL + ++S V+
Sbjct: 36 YPELFDLYKQQKAQDWSEDEVNLENSRIDFQTAAK---SEIEVCIENLLWQWEADSRVSR 92
Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
NI+ + +SN E + +Q E +H+ T+ I+ D E+ + ++ +
Sbjct: 93 NIITLLAPFISNNEFAAMVTKQTEIENLHALTYSEIVRQCISDPTEMIKRVMDNQAVLDR 152
Query: 159 ANWALQYTQTLS--SPSFTTGTKDADQEFLQDLFVFYVVF---EGMWFYTGFAQILSLGR 213
++ L G + D+ Q L F V EG+ F FA +L +
Sbjct: 153 SSTIDDVMAELEILGAKKRLGYELDDEHIRQTLIKFMVSILALEGLEFIASFACTFALAQ 212
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW-TKEFQQKSRTMLHEATLLE 272
+G+A+ Q IM DE LH ++ + + + + + +L E E
Sbjct: 213 RGLFMGVAQLVQKIMLDEILHSKMDFAALDILLKDPVWFQSYQNCKGDVQRILDEVMENE 272
Query: 273 IAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVIDL 329
+A +G VGLN ++++ + A + L+ + +NP P+M + +++
Sbjct: 273 SNWADYIFSEGRSVVGLNPTLLKEWVYYSAKPLYDFLNLDYNYPVVVKNPLPYMDKWMNI 332
Query: 330 KKEKN-FFETRVTEYQQGAELKWD 352
++N E ++Y + D
Sbjct: 333 DSQQNANQEQDNSQYLLNTMVNDD 356
>gi|146318863|ref|YP_001198575.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
suis 05ZYH33]
gi|146321071|ref|YP_001200782.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
suis 98HAH33]
gi|223932819|ref|ZP_03624816.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591]
gi|253751944|ref|YP_003025085.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis
SC84]
gi|253753767|ref|YP_003026908.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis
P1/7]
gi|253755355|ref|YP_003028495.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus suis
BM407]
gi|330833008|ref|YP_004401833.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
suis ST3]
gi|145689669|gb|ABP90175.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 05ZYH33]
gi|145691877|gb|ABP92382.1| Ribonucleotide reductase, beta subunit [Streptococcus suis 98HAH33]
gi|223898528|gb|EEF64892.1| Ribonucleoside-diphosphate reductase [Streptococcus suis 89/1591]
gi|251816233|emb|CAZ51860.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptococcus suis SC84]
gi|251817819|emb|CAZ55572.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptococcus suis BM407]
gi|251820013|emb|CAR46187.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptococcus suis P1/7]
gi|292558520|gb|ADE31521.1| ribonucleotide-diphosphate reductase beta subunit [Streptococcus
suis GZ1]
gi|319758306|gb|ADV70248.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
suis JS14]
gi|329307231|gb|AEB81647.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
suis ST3]
Length = 319
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/303 (19%), Positives = 109/303 (35%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ LT +E+ ++ + G ++L + V A+
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KLTAEEKDLVGKVFGGLTLLDTLQSETGVQALR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L ++F + KA
Sbjct: 79 NDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTLNTKSEIEDIFEWTNSNEYLQRKAKIIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ +T + V E FY+GF L NK+ +AE
Sbjct: 139 EIYETGTPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E + + +L++ E Y
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELSEEEQDKLRDWMYDLLYQLYENEEGYTRSLY--D 241
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 242 AVGWT-EEVLTFLRYNANKALMNLGQDPLFPDSADDVNPII-MNGISTGTSNHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|289551411|ref|YP_003472315.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
[Staphylococcus lugdunensis HKU09-01]
gi|289180942|gb|ADC88187.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
[Staphylococcus lugdunensis HKU09-01]
Length = 322
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 65/308 (21%), Positives = 120/308 (38%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ LTDDER KR L ++ A++ + I
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LTDDERNTFKRALAGLTGLDTHQADDGMPLI 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + A E +H+ ++ +I T+L + + V A +
Sbjct: 73 MLHTTDLRKKAVYAFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKADK 132
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ K+A V V E FY+GF L L KM E
Sbjct: 133 IIENY----HKLWGKEASIYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E ++ ++ +L + E++Y H
Sbjct: 189 RKILLDESIHGVFTGIDAQSLRNELSENEKQQADKEMYVLLEDLYSNEVSYTHMLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
+GL Y+++ N+ +G +P F+ + NP + +D + +FF +
Sbjct: 247 IGLT-EDVLNYVKYNGNKALSNLGFDPYFEEKDFNPI--IENALDTTTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YTLALNVE 311
>gi|116326446|ref|YP_803166.1| ribonucleotide reductase B subunit [Enterobacteria phage RB32]
gi|32709425|gb|AAP86731.1| NrdB [Enterobacteria phage RB32]
gi|115344039|gb|ABI95048.1| ribonucleotide reductase B subunit [Enterobacteria phage RB32]
Length = 392
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 66/364 (18%), Positives = 131/364 (35%), Gaps = 45/364 (12%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ E + + W P EV +
Sbjct: 1 MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHRVFEELTEKSLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A +Y + +
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLVKTREWENAKEFV 174
Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
E ++ E + FY FA + +
Sbjct: 175 ELAKESPDADFRLNRAIKQEAEAKCALMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234
Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
M G A+ ++I RDE LHL +I Q++ +E +Q++ + E
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQEAVDIFMEVNR 294
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVI 327
E +A G GLN S ++ ++ R Q GL P+ ++P+PW+ E +
Sbjct: 295 QEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYL 354
Query: 328 DLKK 331
+
Sbjct: 355 NSDN 358
>gi|313890786|ref|ZP_07824411.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pseudoporcinus SPIN 20026]
gi|313120887|gb|EFR44001.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
pseudoporcinus SPIN 20026]
Length = 319
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 65/333 (19%), Positives = 122/333 (36%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+D E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + V AI + P L F E+VH+ ++ I ++L + +
Sbjct: 60 GGLTLLDTMQSETGVEAIRADIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIED 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + E FY+G
Sbjct: 120 IFEWTNNNEFLQKKAKIINDIYANGDALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E + F++ +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELNEEEQESFREWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFP 321
L++ E Y + VG ++++ AN+ +G +PLF T NP
Sbjct: 225 LYQLYENEENYTKTLYDQ--VGWTDEVM-TFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G+ ++ D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGSVEAMQDD 313
>gi|28377561|ref|NP_784453.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
plantarum WCFS1]
gi|254555734|ref|YP_003062151.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
plantarum JDM1]
gi|300769755|ref|ZP_07079637.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308179714|ref|YP_003923842.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|28270393|emb|CAD63296.1| ribonucleoside-diphosphate reductase, beta chain [Lactobacillus
plantarum WCFS1]
gi|254044661|gb|ACT61454.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
plantarum JDM1]
gi|300492663|gb|EFK27849.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308045205|gb|ADN97748.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
plantarum subsp. plantarum ST-III]
Length = 336
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 114/303 (37%), Gaps = 25/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +D+A W+ L DD R ++ G ++L + + + A+
Sbjct: 34 WEKLTEQFWLDTRIPVSNDMADWRE---LDDDHRWVVGHVFGGLTLLDTLQSQDGLQALR 90
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
R++ L F E+VH+ ++ I +L + E+F+ + AKA W
Sbjct: 91 RNVLTSHETAVLNNIQFMESVHAKSYSTIFETLNTPDEINEIFDWSDSEEFLQAKAQWIY 150
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + V V E FY+GF L N++ +AE
Sbjct: 151 KLYDNIDEDPLKQK-------------VANVFLETFLFYSGFYTPLYYLGHNQLPNVAEI 197
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + EF+ L++ E Y H +
Sbjct: 198 IKLILRDESVHGTYIGYKFQLGFKDRSEKQQAEFKDWMFDFLYKLYENEENYIHLVYDQ- 256
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
+G + + ++ AN+ +G + LF NP M+ + +FF
Sbjct: 257 -IGWS-DEVLTFSRYNANKALMNLGQDALFPDTAEDVNPVV-MNGISTGTSNHDFFSQVG 313
Query: 341 TEY 343
Y
Sbjct: 314 NGY 316
>gi|331701739|ref|YP_004398698.1| ribonucleoside-diphosphate reductase [Lactobacillus buchneri NRRL
B-30929]
gi|329129082|gb|AEB73635.1| Ribonucleoside-diphosphate reductase [Lactobacillus buchneri NRRL
B-30929]
Length = 318
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 58/303 (19%), Positives = 111/303 (36%), Gaps = 26/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL+ W++ L D + ++ G ++L + + ++
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLSDWRT---LDQDHQWVVGHVFGGLTLLDTLQSQEGMASLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ + L F E+VH+ ++ I ++L + E+F+ + KA
Sbjct: 79 KDVQTQHETAVLNNIQFMESVHAKSYSSIFSTLNTPDQIDEIFDWSDSEEFLQNKALKIR 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
P V V E FY+GF L NK+ +AE
Sbjct: 139 DIYANEPDPLKKK--------------VASVFLETFLFYSGFYTPLWYLGHNKIPNVAEI 184
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + P ++ + L++ E Y H +
Sbjct: 185 IKLILRDESVHGTYIGYKFQIGYNQLPKEKQEDMKNWIYDFLYKLYGNEEKYTHILYDQ- 243
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
G ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 244 -TGWT-EDVLTFIRYNANKALMNLGQDPLFPDTAEDVNPVV-MNGISTSTANHDFFSQVG 300
Query: 341 TEY 343
Y
Sbjct: 301 NGY 303
>gi|317495971|ref|ZP_07954333.1| ribonucleotide reductase [Gemella moribillum M424]
gi|316913875|gb|EFV35359.1| ribonucleotide reductase [Gemella moribillum M424]
Length = 322
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 61/308 (19%), Positives = 113/308 (36%), Gaps = 13/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ TE + D+ W L D ER K+ L ++ + + +
Sbjct: 16 YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKERDAYKKVLAGLTGLDTQQGDKGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H + + E +H+ ++ I TSL + + + VP+ A
Sbjct: 74 SLHTEDMRKQAVYSFMGMMEQMHAKSYSTIFTSLIPSKETDYLLDEWVPNNEELQYKA-- 131
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
Q + S + L V V E FY+GF L L K+ E
Sbjct: 132 --QLIESYYLKLFKPEVPTYDLYMARVASVFLESYIFYSGFFYPLYLAGQGKLTTSGEII 189
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DE++H +F +I ++ ++ T+L + E+ Y + G
Sbjct: 190 RKILLDETIHGSFTGFDAQEIFKTLTPEEQEKANKEMYTLLLDLYENELKYTKDIY--GE 247
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
+GL + Y+++ ANR +G F+ E NP + ++ K +FF +
Sbjct: 248 IGL-FEEVKDYVEYNANRALANLGYPGYFEDKEINPI--IENAMNTSTKNHDFFSVKGDG 304
Query: 343 YQQGAELK 350
Y ++
Sbjct: 305 YVVSMNVE 312
>gi|328958552|ref|YP_004375938.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
sp. 17-4]
gi|328674876|gb|AEB30922.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
sp. 17-4]
Length = 318
Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/307 (19%), Positives = 121/307 (39%), Gaps = 28/307 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ A + W+ T VP+ +DLA W+ L+ E+ +IK+ +G A ++L + V A+
Sbjct: 22 WDKATSQFWLDTRVPISNDLADWRE---LSSVEQEVIKKVVGGLALLDTLQSEKGVNAMR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIIT--SLGLDEGELFNMYREVPSITAKANWAL 163
+ + L F E++H+ ++ I+T + E+++ + +
Sbjct: 79 EDVRTHKEAAILNNFLFMESIHAKSYGTILTSLNSIKSINEIYDWMNND----ERMQYKA 134
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + K + + EG+ +Y+ F L +NK+ +AE
Sbjct: 135 KRINDIYKTGNALQKK-----------IASIFLEGILYYSNFFAPLWYRGSNKLANLAEL 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + +L + E+AY E
Sbjct: 184 IKLIIRDESVHGTYLGYKFQLTYNELPEEEQNKLLDWMYPLLEDLMENELAYTEEIYSH- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFETR 339
+G+ A + ++++ AN+ +G + + NP M+ + +FF
Sbjct: 243 -IGI-AEDVKTFVRYNANKSLQNMGFPAYYDNADLADVNPIV-MNGISIETSNHDFFSQV 299
Query: 340 VTEYQQG 346
Y G
Sbjct: 300 GAGYLMG 306
>gi|163791218|ref|ZP_02185634.1| ribonucleotide-diphosphate [Carnobacterium sp. AT7]
gi|159873488|gb|EDP67576.1| ribonucleotide-diphosphate [Carnobacterium sp. AT7]
Length = 320
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 62/318 (19%), Positives = 116/318 (36%), Gaps = 28/318 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + + WE W T +P+ +DL W L E+ M+ + G
Sbjct: 9 NWNNIEDMIDKLTWE---KLVEQFWTDTRIPVSNDLDDW---ARLPKAEKDMVGKVFGGL 62
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFN 147
++L + + V A+ + F E++H+ ++ I ++L + E+F
Sbjct: 63 TLLDTLQSQDGVQALKPFIRTQHEEAVYNNIQFMESMHAKSYSAIFSTLNSKVEIDEIFQ 122
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ KA+ Q + V+ E FY+GF
Sbjct: 123 WTNTNDLLQIKASTINDIYQNGTELQRKV---------------ASVMLESFLFYSGFFA 167
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L NK+ +AE + I+RDES+H + + P +E + + +L +
Sbjct: 168 PLHYLGNNKLPNVAEIIKLILRDESVHGTYIGYKFQIAYNQLPDNEKEEMKNWTYELLFK 227
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325
E+ YA +G + ++++ AN+ +G +PLF T N M+
Sbjct: 228 LYQNEVKYAEYLY--DEIGWT-ERVKVFLRYNANKALQNLGFDPLFPDTANDVDPVIMNG 284
Query: 326 VIDLKKEKNFFETRVTEY 343
+ +FF Y
Sbjct: 285 ISTGTSNHDFFSQVGNGY 302
>gi|315658919|ref|ZP_07911786.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
lugdunensis M23590]
gi|315496043|gb|EFU84371.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
lugdunensis M23590]
Length = 322
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 65/308 (21%), Positives = 120/308 (38%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ LTDDER KR L ++ A++ + I
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LTDDERNTFKRALAGLTGLDTHQADDGMPLI 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + A E +H+ ++ +I T+L + + V A +
Sbjct: 73 MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKADK 132
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ K+A V V E FY+GF L L KM E
Sbjct: 133 IIENY----HKLWGKEASIYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E ++ ++ +L + E++Y H
Sbjct: 189 RKILLDESIHGVFTGIDAQSLRNELSENEKQQADKEMYVLLEDLYSNEVSYTHMLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
+GL Y+++ N+ +G +P F+ + NP + +D + +FF +
Sbjct: 247 IGLT-EDVLNYVKYNGNKALSNLGFDPYFEEKDFNPI--IENALDTTTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YTLALNVE 311
>gi|295397900|ref|ZP_06807962.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
viridans ATCC 11563]
gi|294973880|gb|EFG49645.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
viridans ATCC 11563]
Length = 323
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 64/328 (19%), Positives = 121/328 (36%), Gaps = 34/328 (10%)
Query: 25 LNARS----DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
N + N + + WE W+ T +P+ +DL W++ L+ E+
Sbjct: 4 FNENPYIAINWNDIEDMIDKLTWE---KLTEQFWLDTRIPLSNDLDTWRT---LSAREQD 57
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
MI + G ++L + + + ++ + F E+VH+ ++ I ++L
Sbjct: 58 MIGKVFGGLTLLDTLQSEDGMESLKASIRTQHEEAVYNNIQFMESVHAKSYSSIFSTLNT 117
Query: 141 DE--GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ ++F RE I KAN Q + V E
Sbjct: 118 PKEIDKIFAWTRENEFIQYKANRINGIYQNGTDLQRKV---------------ASVFLES 162
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
FY+GF L K+ +AE + I+RDES+H + + ++ Q
Sbjct: 163 FLFYSGFYAPLWYLGNGKLPNVAEIIKLILRDESVHGTYIGYKFQIAFNQLSKEEQEDMQ 222
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE- 317
+ ++L E E Y+ +G + ++++ AN+ +G +PLF T
Sbjct: 223 NWAFSLLFELYENEAKYSEYIYDD--LGWT-EDVKIFLRYNANKALQNLGFDPLFPDTAD 279
Query: 318 --NPFPWMSEVIDLKKEKNFFETRVTEY 343
+P M+ + +FF Y
Sbjct: 280 DVDPIV-MNGISTGTSNHDFFSQVGNGY 306
>gi|302023955|ref|ZP_07249166.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
suis 05HAS68]
Length = 320
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/303 (19%), Positives = 109/303 (35%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ LT +E+ ++ + G ++L + V A+
Sbjct: 23 WEKLTEQFWLDTRIPLSNDLDDWR---KLTAEEKDLVGKVFGGLTLLDTLQSETGVQALR 79
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ P F E+VH+ ++ I ++L ++F + KA
Sbjct: 80 NDIRTPHEEAVYNNIQFMESVHAKSYSSIFSTLNTKSEIEDIFEWTNSNEYLQRKAKIIN 139
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ +T + V E FY+GF L NK+ +AE
Sbjct: 140 EIYETGTPLEKKV---------------ASVFLETFLFYSGFFTPLYYLGNNKLANVAEI 184
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E + + +L++ E Y
Sbjct: 185 IKLIIRDESVHGTYIGYKFQLGFNELSEEEQDKLRDWMYDLLYQLYENEEGYTRSLY--D 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 243 AVGWT-EEVLTFLRYNANKALMNLGQDPLFPDSADDVNPII-MNGISTGTSNHDFFSQVG 300
Query: 341 TEY 343
Y
Sbjct: 301 NGY 303
>gi|241895721|ref|ZP_04783017.1| ribonucleotide-diphosphate reductase subunit beta [Weissella
paramesenteroides ATCC 33313]
gi|241871088|gb|EER74839.1| ribonucleotide-diphosphate reductase subunit beta [Weissella
paramesenteroides ATCC 33313]
Length = 318
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 63/314 (20%), Positives = 113/314 (35%), Gaps = 29/314 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ +T+ E ++ G ++L + + + ++
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWR---KMTEQEHYLVGHVFGGLTLLDTLQSQDGMASLK 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ L F E+VH+ ++ I +L E+F+ + KAN
Sbjct: 79 QATRTQHELAVLNNIEFMESVHAKSYSSIFETLHTPAEIDEIFDWTNSNEFLQYKANRIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
Q Q S V E FY+GF L NK+ +AE
Sbjct: 139 QVYQNGSQLQRKV---------------ASVFLETFLFYSGFYTPLWYLGHNKLNNVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E E + +L + E Y
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGFNELSTDEQNELKTWLYDLLLDLYGNEEKYTKLLY--D 241
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
+G S ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 242 EIGWT-ESVLTFLRYNANKALMNLGQDPLFPDGAEDVNPIV-MNGISTTTSNHDFFSQVG 299
Query: 341 TEYQQGA--ELKWD 352
Y+ G ++ D
Sbjct: 300 NGYRLGQVEAMEDD 313
>gi|70727160|ref|YP_254076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
haemolyticus JCSC1435]
gi|68447886|dbj|BAE05470.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
haemolyticus JCSC1435]
Length = 322
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 65/308 (21%), Positives = 121/308 (39%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ LT+DE+ KR L ++ A++ + I
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LTEDEKNTFKRALAGLTGLDTHQADDGMPLI 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + A E +H+ ++ +I T+L + + V + +
Sbjct: 73 MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDK 132
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ K+A V V E FY+GF L L KM E
Sbjct: 133 IIENY----HKLWGKEASIYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E ++ ++ +L + E++Y H
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSENEKQKADKEMYKLLEDLYANEVSYTHMLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
+GL+ Y+Q+ N+ +G EP F+ E NP + +D + +FF +
Sbjct: 247 IGLS-EDVLNYVQYNGNKALSNLGFEPYFEEKEFNPI--IENALDTTTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YTLALNVE 311
>gi|223043034|ref|ZP_03613082.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
capitis SK14]
gi|314933044|ref|ZP_07840410.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
caprae C87]
gi|222443888|gb|EEE49985.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
capitis SK14]
gi|313654363|gb|EFS18119.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
caprae C87]
Length = 322
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 66/308 (21%), Positives = 119/308 (38%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ LTD E+ K+ L ++ A++ + I
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LTDSEKETFKKALAGLTGLDTHQADDGMPLI 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + A E +H+ ++ +I T+L + + V
Sbjct: 73 MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPH----LKY 128
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ + K+A V V E FY+GF L L KM E
Sbjct: 129 KSDKIIDNYHKLWGKEASIFDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E ++ Q+ +L+E E++Y H
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEMYKLLNELYDNEVSYTHLLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
+GL Y+++ N+ +G EP F+ E NP + +D K +FF +
Sbjct: 247 IGLT-EDVLNYVRYNGNKALSNLGFEPYFEEREFNPI--IENALDTSTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YTLALNVE 311
>gi|308814593|ref|YP_003934867.1| ribonucleotide reductase B subunit [Shigella phage SP18]
gi|308206185|gb|ADO19584.1| ribonucleotide reductase B subunit [Shigella phage SP18]
Length = 392
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 65/364 (17%), Positives = 135/364 (37%), Gaps = 45/364 (12%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ E + W P EV +
Sbjct: 1 MSTVFN-TTPVDVLTEPMFFGSGLGIARYDIQ--RHKVFEELTEKQLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L + ++ + NL + + +S+ A+ +S+P ++ F
Sbjct: 58 DGAQF---NKLPEHQQNIFTNNLKYQSLLDSIQGRAPAAALAALVSDPSLDTWIQTWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTT------- 176
E +HS ++ +I+ +L D ++F+ +I +A Y + + +
Sbjct: 115 ETIHSRSYTHIMRNLYTDPAKVFDEILLDDAIMKRAESIGHYYDDVLNKTRQWQNQIAFV 174
Query: 177 ----GTKDADQEFLQDLFVFYVVF-----------------EGMWFYTGFAQILSLGRAN 215
T +AD+ + + + E + FY FA + +
Sbjct: 175 ELAKETPEADERLERAIKQESIAKRALMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234
Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
M G A+ ++I RDE LHL ++ Q++ E + ++ + E
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYILRQLQTGVDGDEWVKIAHECEAEAAAIFMEVNR 294
Query: 271 LEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEP--LFKYTENPFPWMSEVI 327
E +A G GL+ +++ ++ R Q GL + + T++P PW+ E +
Sbjct: 295 QEKEWAVHLFKDGGLPGLSVEILNRFIDYLTVSRMKQCGLPCEIVLESTKHPIPWIREYL 354
Query: 328 DLKK 331
+
Sbjct: 355 NSDN 358
>gi|228904848|ref|ZP_04068902.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis IBL 4222]
gi|228854862|gb|EEM99466.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis IBL 4222]
Length = 343
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 61/311 (19%), Positives = 127/311 (40%), Gaps = 18/311 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+ E+P+ D +W + L D++ + K+ LG ++ + +
Sbjct: 29 IYNQMRQQFWLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLV 85
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
H+ +P+ + + A E +H+ ++ +I +L +E +F+ E P + KA+
Sbjct: 86 SLHMEDPQKKAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADII 145
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+ + L P D D + L V V E FY+GF L L ++ E
Sbjct: 146 TGHYRKLLKP-------DVDPKELYMAIVASVFLESFLFYSGFFYPLFLAGQGQLTASGE 198
Query: 223 QYQYIMRDESLHLNFGIDVINQ-IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM- 280
I+RDE++H G + + + +E +++ +L E+ Y ++
Sbjct: 199 IIALILRDEAIHGVTGGIFAQEIYENQLTEAEQQEVDKEAIQLLEMLYANELDYTNDVYA 258
Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETR 339
P G + +++++ AN+ +G + F NP + + K+ +FF +
Sbjct: 259 PLGKDMI--EEVNKFLRYNANKAMMNLGYDQYFDDEYVNPIVQ-NGLQTKTKQHDFFSVK 315
Query: 340 VTEYQQGAELK 350
Y + ++
Sbjct: 316 GNGYVKAINVE 326
>gi|213419183|ref|ZP_03352249.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 305
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/293 (18%), Positives = 106/293 (36%), Gaps = 28/293 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E P + KA L + + V E FY+GF +
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWLPMY 171
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 172 FSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKLFALDLLMELYD 231
Query: 271 LEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP 319
EI Y G+V + ++ + AN+ +G E LF NP
Sbjct: 232 NEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNP 280
>gi|239636654|ref|ZP_04677656.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
warneri L37603]
gi|239598009|gb|EEQ80504.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
warneri L37603]
gi|330683860|gb|EGG95634.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
epidermidis VCU121]
Length = 324
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 64/308 (20%), Positives = 119/308 (38%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ L++ E+ K+ L ++ A++ + I
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LSEAEKNTFKKALAGLTGLDTHQADDGMPLI 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + A E +H+ ++ +I T+L + + V + +
Sbjct: 73 MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPHLKYKSDK 132
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ K+A V V E FY+GF L L KM E
Sbjct: 133 IIENY----HKLWGKEASIFDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E + Q+ +L E E++Y H
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSESEKQRADQEMYKLLKELYDNEVSYTHLLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
+GL A Y+++ N+ +G EP F+ E NP + +D + +FF +
Sbjct: 247 IGL-AEDVLNYVKYNGNKALSNLGFEPYFEEREFNPI--IENALDTTTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YTLALNVE 311
>gi|312864696|ref|ZP_07724927.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
downei F0415]
gi|311099823|gb|EFQ58036.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
downei F0415]
Length = 319
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 63/319 (19%), Positives = 115/319 (36%), Gaps = 30/319 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ + WE W+ T +P+ +DL W+ L++ E+ ++ + G
Sbjct: 9 NWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSEAEKDLVGKVFGGL 62
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ + V AI + L F E+VH+ ++ I ++L E+F+
Sbjct: 63 TLLDTMQSQTGVEAIRGDIRTQHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFD 122
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ KA + + E FY+GF
Sbjct: 123 WTNNNEYLQKKAEIINEIYLHGGALQKKV---------------ASTFLETFLFYSGFFT 167
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L NK+ +AE + I+RDES+H + E EF+ +L++
Sbjct: 168 PLYYLGNNKLSNVAEIIKLIIRDESVHGTYIGYKFQLGFNELSEEEQSEFRDWMYDLLYQ 227
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y VG ++++ AN+ +G +PLF T NP M+
Sbjct: 228 LYENEELYTKTLY--DEVGWT-EEVMTFLRYNANKALMNLGQDPLFPDTADDVNPIV-MN 283
Query: 325 EVIDLKKEKNFFETRVTEY 343
+ +FF Y
Sbjct: 284 GISTGTSNHDFFSQVGNGY 302
>gi|242372965|ref|ZP_04818539.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
epidermidis M23864:W1]
gi|242349291|gb|EES40892.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
epidermidis M23864:W1]
Length = 322
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 66/308 (21%), Positives = 119/308 (38%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ L+D ER K+ L ++ A++ + I
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LSDSERETFKKALAGLTGLDTHQADDGMPLI 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + A E +H+ ++ +I T+L + + V
Sbjct: 73 MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPH----LKY 128
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ + K+A V V E FY+GF L L KM E
Sbjct: 129 KSDKIIDNYHKLWGKEASIFDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E ++ Q+ +L+E E++Y H
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEMYKLLNELYDNEVSYTHLLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
+GL Y+++ N+ +G EP F+ E NP + +D K +FF +
Sbjct: 247 IGLT-EDVLNYVRYNGNKALSNLGFEPYFEEREFNPI--IENALDTSTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YTLALNVE 311
>gi|75758223|ref|ZP_00738348.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|74494277|gb|EAO57368.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar israelensis ATCC 35646]
Length = 342
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 61/311 (19%), Positives = 127/311 (40%), Gaps = 18/311 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+ E+P+ D +W + L D++ + K+ LG ++ + +
Sbjct: 28 IYNQMRQQFWLENEIPVSKDKNVW---DMLPKDQKEVYKKVLGGLTLLDTKQGGEGMPLV 84
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
H+ +P+ + + A E +H+ ++ +I +L +E +F+ E P + KA+
Sbjct: 85 SLHMEDPQKKAIINFMAMMEDIHAKSYSHIFMTLCENEEVDAVFDWVEENPFLQKKADII 144
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+ + L P D D + L V V E FY+GF L L ++ E
Sbjct: 145 TGHYRKLLKP-------DVDPKELYMAIVASVFLESFLFYSGFFYPLFLAGQGQLTASGE 197
Query: 223 QYQYIMRDESLHLNFGIDVINQ-IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM- 280
I+RDE++H G + + + +E +++ +L E+ Y ++
Sbjct: 198 IIALILRDEAIHGVTGGIFAQEIYENQLTEAEQQEVDKEAIQLLEMLYANELDYTNDVYA 257
Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT-ENPFPWMSEVIDLKKEKNFFETR 339
P G + +++++ AN+ +G + F NP + + K+ +FF +
Sbjct: 258 PLGKDMI--EEVNKFLRYNANKAMMNLGYDQYFDDEYVNPIVQ-NGLQTKTKQHDFFSVK 314
Query: 340 VTEYQQGAELK 350
Y + ++
Sbjct: 315 GNGYVKAINVE 325
>gi|224475873|ref|YP_002633479.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
carnosus subsp. carnosus TM300]
gi|222420480|emb|CAL27294.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
carnosus subsp. carnosus TM300]
Length = 324
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 65/308 (21%), Positives = 117/308 (37%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ LT +E+ K+ L ++ A++ + I
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LTPEEQDTFKKALAGLTGLDTHQADDGMPLI 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H + + A E +H+ ++ +I T+L + + V
Sbjct: 73 MLHTKDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVLEEPH----LKF 128
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ + K+A V V E FY+GF L L +M E
Sbjct: 129 KSDKIVGNYHKLWAKEASVYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGRMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E + Q +L E E++Y H+
Sbjct: 189 RKILLDESIHGVFTGLDAQHLRNELSENEKQRADQHMYKLLEELYKNEVSYTHKLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
+GL A Y+++ N+ +G EP F+ E NP + +D K +FF +
Sbjct: 247 IGL-AEDVLNYVRYNGNKALSNLGFEPYFEEREFNPI--IENALDTSTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YTLALNVE 311
>gi|109290088|ref|YP_656337.1| hypothetical protein PHG25ORF102c [Aeromonas phage 25]
gi|104345761|gb|ABF72661.1| hypothetical protein PHG25ORF102c [Aeromonas phage 25]
Length = 332
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 53/319 (16%), Positives = 99/319 (31%), Gaps = 28/319 (8%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
+KY + + W E + +D+ ++ LT E I L F E V
Sbjct: 19 IKYPEFGKLADEQMHAFWPWDEPVVDNDIQDLRT--KLTPGELNGITTVLKLFTIYERKV 76
Query: 97 ANNIVLAIYRHLS-NPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
+ H PE + + E H+ + + L LD+ + ++E
Sbjct: 77 GEDYWSGRIAHTFGRPEINRMATLFSAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKESEE 136
Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL--- 211
++ + + + F + EG Y+ FA +
Sbjct: 137 LSRRIQFVGKSVNDPDDA---------------KSFAAFTFIEGAVLYSSFAFLKHFQAQ 181
Query: 212 -GRANKMVGIAEQYQYIMRDESLH----LNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
+ M I + DE H + ++K + + + M
Sbjct: 182 ECGKDLMRNICRGVDLSVADEHHHSIGGAMLFQTLCREMKEKYGEDVRAKLKNDIINMAR 241
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSE 325
+ E + G+ A +++ N +G EP+F+ NP W
Sbjct: 242 QVFDHESGIIDLVFAEPIDGITADELRVFVKSRINLCLENLGYEPIFEIENNPIADWFYR 301
Query: 326 VIDLKKEKNFFETRVTEYQ 344
I+ KK +FF +EY
Sbjct: 302 TINAKKFHDFFTGSGSEYN 320
>gi|314121808|ref|YP_004063927.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
vB_EcoM-VR7]
gi|313151565|gb|ADR32621.1| NrdB aerobic NDP reductase small subunit [Enterobacteria phage
vB_EcoM-VR7]
Length = 392
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 64/364 (17%), Positives = 132/364 (36%), Gaps = 45/364 (12%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ E + W P EV +
Sbjct: 1 MSTVFN-TTPVDVLAEPMFFGSGLGIARYDIQ--RHKVFEELTEKQLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L + ++ + NL + + +S+ A+ +S+P ++ F
Sbjct: 58 DGAQF---NKLPEHQQNIFTNNLKYQSLLDSIQGRAPAAALAALVSDPSLDTWIQTWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A Y + + + + A
Sbjct: 115 ETIHSRSYTHIMRNLYTDPAKVFDEILLDDAIMKRAESIGYYYDDVLNKTRQWQNQIAFV 174
Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
E ++ E + FY FA + +
Sbjct: 175 ELAKETPEVDQRLERAIKQEAIAKRALMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234
Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
M G A+ ++I RDE LHL ++ Q++ E + ++ + E
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYILRQLQTGVDGDEWVKIAHECEAEAAAIFMEVNR 294
Query: 271 LEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEP--LFKYTENPFPWMSEVI 327
E +A G GL+ +++ ++ R Q GL + + T++P PW+ E +
Sbjct: 295 QEKEWAVHLFKDGGLPGLSVEILNRFIDYLTVSRMKQCGLPCEIVLESTKHPIPWIREYL 354
Query: 328 DLKK 331
+
Sbjct: 355 NSDN 358
>gi|116493227|ref|YP_804962.1| ribonucleotide-diphosphate reductase subunit beta [Pediococcus
pentosaceus ATCC 25745]
gi|116103377|gb|ABJ68520.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Pediococcus pentosaceus ATCC 25745]
Length = 317
Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats.
Identities = 62/308 (20%), Positives = 113/308 (36%), Gaps = 26/308 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL+ W+ L +D + ++ G ++L + + + A+
Sbjct: 21 WEKLTEQFWLDTRIPISNDLSDWRE---LDEDHKWVVGHVFGGLTLLDTLQSQDGMAALR 77
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + P L F E+VH+ ++ I +L E+F + K
Sbjct: 78 KDIRTPHETAVLNNIQFMESVHAKSYSSIFETLNTPSEIDEIFAWSDSEEFLQNKTKRIY 137
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ P + V E FY+GF L N++ +AE
Sbjct: 138 ELYHDDEHPLKKK--------------ISSVFLETFLFYSGFFTPLYYLGHNQLNNVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E +E + L++ E Y H +
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGLKELGENEQQEIKDWMYNFLYDLYDNEEKYVHTLYDQ- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
VG + ++ AN+ +G +PLF TE NP M+ + +FF
Sbjct: 243 -VGWT-DEVLTFTRYNANKALMNLGQDPLFPDTEADVNPIV-MNGISTGTSNHDFFSQVG 299
Query: 341 TEYQQGAE 348
Y+ G
Sbjct: 300 NGYRLGNV 307
>gi|225868773|ref|YP_002744721.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi
subsp. zooepidemicus]
gi|225702049|emb|CAW99658.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptococcus equi subsp. zooepidemicus]
Length = 319
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 61/322 (18%), Positives = 116/322 (36%), Gaps = 30/322 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+ E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAVEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + + V AI + + P L F E+VH+ ++ I ++L + +
Sbjct: 60 GGLTLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIED 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + S+ E FY+G
Sbjct: 120 IFEWTNNNLFLQNKAKIINDIYENGSALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E + + +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSESEQESLRDWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEEQYTKTLY--DEVGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEY 343
M+ + +FF Y
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGY 302
>gi|225870271|ref|YP_002746218.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus equi
subsp. equi 4047]
gi|225699675|emb|CAW93380.1| putative ribonucleoside-diphosphate reductase beta chain
[Streptococcus equi subsp. equi 4047]
Length = 319
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 63/333 (18%), Positives = 119/333 (35%), Gaps = 32/333 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+ E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---RLSAVEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + + V AI + + P L F E+VH+ ++ I ++L + +
Sbjct: 60 GGLTLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIED 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + S+ E FY+G
Sbjct: 120 IFEWTNNNVFLQNKAKIINDIYENGSALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E + + +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSESEQESLRDWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEEQYTKTLY--DEVGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEYQQGA--ELKWD 352
M+ + +FF Y G + D
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGYLLGTVEAMTDD 313
>gi|148700272|gb|EDL32219.1| mCG1034315 [Mus musculus]
Length = 213
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 6/153 (3%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
+ E V +++ +L S + P++Y W Y A + W EV + +L W
Sbjct: 64 ETEENVVRSNEEPLLRKSSRRFVIFPIQYPDIWRMYKQARASFWTGEEVDLSKNLPHW-- 121
Query: 71 KNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHT 130
N L DE+ I L FFA+S+ +V N+V + + PE + Q E VHS
Sbjct: 122 -NKLKSDEKYFISHILAFFAASDGIVNENLVERFSQEVQVPETHCFYGFQILIENVHSEM 180
Query: 131 FQYIITSLGLDEGE---LFNMYREVPSITAKAN 160
+ +I + D + LFN +P + KA+
Sbjct: 181 YSLLIDTYIRDPKKREFLFNAIETMPYVKKKAD 213
>gi|158079504|ref|YP_001504317.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C]
gi|157890348|dbj|BAF81476.1| putative ribonucleotide reductase [Enterococcus phage phiEF24C]
Length = 327
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 66/301 (21%), Positives = 118/301 (39%), Gaps = 23/301 (7%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T VP+ +D+ W L+D E+ +I + G +++ + + V ++
Sbjct: 24 WKKLTEQFWLDTRVPVGNDVNDW---AKLSDMEQDLINKVFGGLTLLDTVQSESGVHSLL 80
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
+ L AF EAVH+ ++ I ++ E+ N++ V + LQY
Sbjct: 81 DDVRTQHEEAVLNNIAFMEAVHAKSYSTIFSTF-NTPTEIDNIFEWVATNKR-----LQY 134
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
+ + + GT + V+ E FY+GF L KMV AE +
Sbjct: 135 KANIINDIYRNGTPLQKK-------SASVLLESFLFYSGFYTPLRYLGEAKMVNTAEIIK 187
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I+RDES+H + + P KE +Q + + E Y E + +
Sbjct: 188 LIIRDESVHGTYIGYKYQLGFNQLPETEQKEMEQWVIDLAFKLWENETQYTAELYSE--I 245
Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTE 342
G ++++ N+ +G+ PLF T NP M+ + +FF
Sbjct: 246 GWT-KDVNTFLEYNLNKALANLGMNPLFPTTSADVNPIV-MNGISTTTSNHDFFSQVGNG 303
Query: 343 Y 343
Y
Sbjct: 304 Y 304
>gi|269121363|ref|YP_003309540.1| ribonucleoside-diphosphate reductase [Sebaldella termitidis ATCC
33386]
gi|268615241|gb|ACZ09609.1| Ribonucleoside-diphosphate reductase [Sebaldella termitidis ATCC
33386]
Length = 331
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 62/306 (20%), Positives = 127/306 (41%), Gaps = 19/306 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ TE D+ W S L + R K+ LG ++L ++ + +
Sbjct: 20 FWEQNLKQFWIDTEYIPSKDIDSWNS---LEQEMREAYKKALGGLTLLDTLQSHTGMPKV 76
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
H+ + + + L E +H+ ++ I T++ E+FN +E + KA
Sbjct: 77 IDHIDSLQNKSVLSYMCMMETIHAKSYSTIFTTVATTPEINEIFNWVQENEYLQFKARTI 136
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L KDA E + V+ E FY+GF L L +M +
Sbjct: 137 DSYYRKLDK-------KDATDEEIFMALSSSVLLETFLFYSGFFLPLWLAGQGQMGASCD 189
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
+ I+ DES+H F + + + + ++ + +++ E+ Y E
Sbjct: 190 IIKKIIADESIHGVFVGLLAQEFFKKFTPEDQQRIEKNLKELMYVLYENELKYTDEVY-- 247
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETRV 340
+GL+ ++Y+++ AN+ +G + F+ E NP + ++++ + +FF +
Sbjct: 248 TEIGLS-GDVKEYIRYNANKALMNLGFDEEFEVKEVNPI--VLNGLNVETTQHDFFSKKS 304
Query: 341 TEYQQG 346
T Y++
Sbjct: 305 TNYEKA 310
>gi|184154755|ref|YP_001843095.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
fermentum IFO 3956]
gi|260663216|ref|ZP_05864108.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
fermentum 28-3-CHN]
gi|183226099|dbj|BAG26615.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
fermentum IFO 3956]
gi|260552408|gb|EEX25459.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
fermentum 28-3-CHN]
gi|299782855|gb|ADJ40853.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
fermentum CECT 5716]
Length = 333
Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 67/324 (20%), Positives = 121/324 (37%), Gaps = 28/324 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ NQ+ + WE W+ T +P+ +DL W+ L DD + + G
Sbjct: 10 NWNQVSDMIDKATWE---KLTEQFWLDTRIPVSNDLDDWRE---LDDDHKWTVGHVFGGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
++L + + A+ + + P L F E+VH+ ++ I ++L + E+F+
Sbjct: 64 TLLDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFS 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ +KA V V E FY+GF
Sbjct: 124 WSDSEEYLQSKAVKIGNLYLDAQEDPLKKK-------------VANVFLETFLFYSGFYT 170
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L NK+ +AE + I+RDES+H + + ++ ++ L+E
Sbjct: 171 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGMNQLTEKQQQDMKRWMYDFLYE 230
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y H + +G ++++ AN+ +G +PLF T NP M+
Sbjct: 231 LYDNEEKYTHVLYDQ--IGWT-DDVLVFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 286
Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
+ +FF Y+ GA
Sbjct: 287 GISTTTSNHDFFSQVGNGYRLGAV 310
>gi|32709437|gb|AAP86737.1| NrdB [Enterobacteria phage TuIa]
Length = 391
Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 68/362 (18%), Positives = 134/362 (37%), Gaps = 44/362 (12%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + ++V+V ++ M + ++ E + + W P EV +
Sbjct: 1 MSTVFN-TQQVDVLNEPMFFGSGLGLARYDIQ--RHKVFEELIEKSLSFFWRPEEVNLML 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + LS+P ++ F
Sbjct: 58 DSAQF---NKLPQFQQDIFTNNLKYQSLLDSIQGRAPSAVLMALLSDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A +Y + + +
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGKYYDDVLVKTRHWENAKENY 174
Query: 184 EFL---------------------------QDLFVFYVVFEGMWFYTGFAQILSLGRAN- 215
E E + FY FA + +
Sbjct: 175 ECSIGSCQQNDIEMYEEIMFNAKHDLMKSLYLCLHVINALEAIRFYVSFACTFNFHKNME 234
Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLL 271
M G A+ ++I RDE LHL +I Q++ KE +Q++ + E
Sbjct: 235 IMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVQIAKECEQEAVDIFMEVNSQ 294
Query: 272 EIAYAHETMPKGF-VGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVID 328
E +A G G+N S ++ ++ R Q GL P+ T++P+PW+ E ++
Sbjct: 295 EKEWAAHLFKDGTCPGINTQSMCAFVDYLTVSRMKQCGLPCPITDAPTKHPYPWIREYLN 354
Query: 329 LK 330
Sbjct: 355 SD 356
>gi|228861541|ref|YP_002854562.1| ribonucleotide reductase B subunit [Enterobacteria phage RB14]
gi|227438557|gb|ACP30870.1| ribonucleotide reductase B subunit [Enterobacteria phage RB14]
Length = 392
Score = 122 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 68/364 (18%), Positives = 134/364 (36%), Gaps = 45/364 (12%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ E + + W P EV +
Sbjct: 1 MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHRVFEELTEKSLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A +Y + + AD
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKTRYWENAKADI 174
Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
E+ ++ E + FY FA + +
Sbjct: 175 EYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234
Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
M G A+ ++I RDE LHL +I Q++ +E +Q++ + E
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDQWVKIAQECEQEAVDIFMEVNR 294
Query: 271 LEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVI 327
E +A G GLN S ++ ++ R Q GL P+ ++P+PW+ E +
Sbjct: 295 QEKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYL 354
Query: 328 DLKK 331
+
Sbjct: 355 NSDN 358
>gi|227514022|ref|ZP_03944071.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
14931]
gi|227087608|gb|EEI22920.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
14931]
Length = 333
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 67/324 (20%), Positives = 120/324 (37%), Gaps = 28/324 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ NQ+ + WE W+ T +P+ +DL W+ L DD + + G
Sbjct: 10 NWNQVSDMIDKATWE---KLTEQFWLDTRIPVSNDLDDWRE---LDDDHKWTVGHVFGGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
++L + + A+ + + P L F E+VH+ ++ I ++L + E+F+
Sbjct: 64 TLLDTLQSEAGLTALKQDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFS 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ KA V V E FY+GF
Sbjct: 124 WSDSEEYLQNKAVKIGNLYLDAQEDPLKKK-------------VANVFLETFLFYSGFYT 170
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L NK+ +AE + I+RDES+H + + ++ ++ L+E
Sbjct: 171 PLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGMNQLTEKQQQDMKRWMYDFLYE 230
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y H + +G ++++ AN+ +G +PLF T NP M+
Sbjct: 231 LYDNEEKYTHVLYDQ--IGWT-DDVLVFIRYNANKALMNLGQDPLFPDTASDVNPVV-MN 286
Query: 325 EVIDLKKEKNFFETRVTEYQQGAE 348
+ +FF Y+ GA
Sbjct: 287 GISTTTSNHDFFSQVGNGYRLGAV 310
>gi|195977892|ref|YP_002123136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
equi subsp. zooepidemicus MGCS10565]
gi|195974597|gb|ACG62123.1| ribonucleotide reductase of class Ib (aerobic) beta subunit NrdF
[Streptococcus equi subsp. zooepidemicus MGCS10565]
Length = 319
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 61/322 (18%), Positives = 116/322 (36%), Gaps = 30/322 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N++ + WE W+ T +P+ +DL W+ L+ E+ ++ +
Sbjct: 6 EAINWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSAVEKDLVGKVF 59
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--E 144
G +++ + + V AI + + P L F E+VH+ ++ I ++L + +
Sbjct: 60 GGLTLLDTMQSESGVEAIRKDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIED 119
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
+F + KA + S+ E FY+G
Sbjct: 120 IFEWTNNNLFLQNKAKIINDIYKNGSALQKKV---------------ASTYLETFLFYSG 164
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L NK+ +AE + I+RDES+H + E + + +
Sbjct: 165 FFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLGFNELSDSEQESLRDWMYDL 224
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFP 321
L++ E Y VG ++++ AN+ +G +PLF NP
Sbjct: 225 LYQLYENEEQYTKTLY--DEVGWT-EEVMTFLRYNANKALMNLGQDPLFPDTANDVNPIV 281
Query: 322 WMSEVIDLKKEKNFFETRVTEY 343
M+ + +FF Y
Sbjct: 282 -MNGISTGTSNHDFFSQVGNGY 302
>gi|27467432|ref|NP_764069.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
epidermidis ATCC 12228]
gi|57866341|ref|YP_187991.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
epidermidis RP62A]
gi|251810165|ref|ZP_04824638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
epidermidis BCM-HMP0060]
gi|282875687|ref|ZP_06284558.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
epidermidis SK135]
gi|293368193|ref|ZP_06614822.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
epidermidis M23864:W2(grey)]
gi|27314975|gb|AAO04111.1|AE016745_210 ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
epidermidis ATCC 12228]
gi|57636999|gb|AAW53787.1| ribonucleoside-diphosphate reductase 2, beta subunit
[Staphylococcus epidermidis RP62A]
gi|251806217|gb|EES58874.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
epidermidis BCM-HMP0060]
gi|281295714|gb|EFA88237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
epidermidis SK135]
gi|291317616|gb|EFE58033.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329723280|gb|EGG59810.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
epidermidis VCU144]
gi|329736749|gb|EGG73014.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
epidermidis VCU028]
gi|329737954|gb|EGG74178.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
epidermidis VCU045]
Length = 322
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 67/308 (21%), Positives = 120/308 (38%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ LTD E+ K+ L ++ A++ + I
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LTDSEKNTFKKALAGLTGLDTHQADDGMPLI 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + A E +H+ ++ +I T+L + + V
Sbjct: 73 MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPH----LKY 128
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ + K+A V V E FY+GF L L KM E
Sbjct: 129 KSDKIVENYHKLWGKEASIYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E ++ Q+ +L+E E++Y H
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEMYKLLNELYDNEVSYTHLLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
+GL A Y+++ N+ +G EP F+ E NP + +D K +FF +
Sbjct: 247 IGL-AEDVLNYVRYNGNKALSNLGFEPYFEEREFNPI--IENALDTSTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YTLALNVE 311
>gi|15923722|ref|NP_371256.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus Mu50]
gi|15926409|ref|NP_373942.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus N315]
gi|21282423|ref|NP_645511.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus MW2]
gi|49482989|ref|YP_040213.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus MRSA252]
gi|49485604|ref|YP_042825.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus MSSA476]
gi|57651569|ref|YP_185668.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus COL]
gi|82750436|ref|YP_416177.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus RF122]
gi|87162072|ref|YP_493420.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|88194508|ref|YP_499303.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|148267192|ref|YP_001246135.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus JH9]
gi|150393241|ref|YP_001315916.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus JH1]
gi|151220913|ref|YP_001331735.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus str. Newman]
gi|156979060|ref|YP_001441319.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus Mu3]
gi|161508997|ref|YP_001574656.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|221141144|ref|ZP_03565637.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus str. JKD6009]
gi|253315835|ref|ZP_04839048.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus str. CF-Marseille]
gi|253731358|ref|ZP_04865523.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus USA300_TCH959]
gi|253732821|ref|ZP_04866986.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus TCH130]
gi|255005523|ref|ZP_05144124.2| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus Mu50-omega]
gi|257424852|ref|ZP_05601279.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus 55/2053]
gi|257427520|ref|ZP_05603919.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257430151|ref|ZP_05606535.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus 68-397]
gi|257432852|ref|ZP_05609212.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus E1410]
gi|257435756|ref|ZP_05611804.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus M876]
gi|257794947|ref|ZP_05643926.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus A9781]
gi|258418263|ref|ZP_05682528.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus A9763]
gi|258421560|ref|ZP_05684485.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus A9719]
gi|258430755|ref|ZP_05688467.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus A9299]
gi|258441753|ref|ZP_05691025.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus A8115]
gi|258445806|ref|ZP_05693983.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus A6300]
gi|258449617|ref|ZP_05697719.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus A6224]
gi|258452940|ref|ZP_05700934.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus A5948]
gi|258454017|ref|ZP_05701989.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus A5937]
gi|262049516|ref|ZP_06022386.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
aureus D30]
gi|262052319|ref|ZP_06024522.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
aureus 930918-3]
gi|269202352|ref|YP_003281621.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus ED98]
gi|282894500|ref|ZP_06302729.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus A8117]
gi|282903362|ref|ZP_06311253.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus C160]
gi|282905140|ref|ZP_06312998.1| ribonucleoside-diphosphate reductase beta subunit [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282908118|ref|ZP_06315949.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282910377|ref|ZP_06318181.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282913572|ref|ZP_06321361.1| ribonucleoside-diphosphate reductase 2, beta subunit
[Staphylococcus aureus subsp. aureus M899]
gi|282918525|ref|ZP_06326262.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus C427]
gi|282922028|ref|ZP_06329725.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus A9765]
gi|282923491|ref|ZP_06331171.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus C101]
gi|282926597|ref|ZP_06334227.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus A10102]
gi|283957564|ref|ZP_06375017.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus A017934/97]
gi|284023753|ref|ZP_06378151.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus 132]
gi|293500617|ref|ZP_06666468.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus 58-424]
gi|293509565|ref|ZP_06668276.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus M809]
gi|293524151|ref|ZP_06670838.1| ribonucleoside-diphosphate reductase 2, beta subunit
[Staphylococcus aureus subsp. aureus M1015]
gi|294849402|ref|ZP_06790145.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754]
gi|295406453|ref|ZP_06816259.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819]
gi|295427309|ref|ZP_06819944.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296275141|ref|ZP_06857648.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus MR1]
gi|297208541|ref|ZP_06924970.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|297245179|ref|ZP_06929053.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796]
gi|297590338|ref|ZP_06948977.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus MN8]
gi|300912633|ref|ZP_07130076.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus TCH70]
gi|304381650|ref|ZP_07364299.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|4490610|emb|CAB38643.1| ribonucleotide reductase minor subunit [Staphylococcus aureus]
gi|13700623|dbj|BAB41920.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
aureus subsp. aureus N315]
gi|14246501|dbj|BAB56894.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
aureus subsp. aureus Mu50]
gi|14329710|emb|CAC40668.1| ribonucleotide-diphosphate reductase beta chain [Staphylococcus
aureus]
gi|21203860|dbj|BAB94559.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
aureus subsp. aureus MW2]
gi|49241118|emb|CAG39796.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
aureus subsp. aureus MRSA252]
gi|49244047|emb|CAG42473.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
aureus subsp. aureus MSSA476]
gi|57285755|gb|AAW37849.1| ribonucleoside-diphosphate reductase 2, beta subunit
[Staphylococcus aureus subsp. aureus COL]
gi|82655967|emb|CAI80371.1| ribonucelotide diphosphate reductase beta chain [Staphylococcus
aureus RF122]
gi|87128046|gb|ABD22560.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|87202066|gb|ABD29876.1| ribonucleotide-disphosphate reductase beta chain, putative
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|147740261|gb|ABQ48559.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Staphylococcus aureus subsp. aureus JH9]
gi|149945693|gb|ABR51629.1| Ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
aureus JH1]
gi|150373713|dbj|BAF66973.1| ribonucleotide-diphosphate reductase beta chain [Staphylococcus
aureus subsp. aureus str. Newman]
gi|156721195|dbj|BAF77612.1| ribonucleoside-diphosphate reductase minor subunit [Staphylococcus
aureus subsp. aureus Mu3]
gi|160367806|gb|ABX28777.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|253724883|gb|EES93612.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus USA300_TCH959]
gi|253729186|gb|EES97915.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus TCH130]
gi|257272422|gb|EEV04545.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus 55/2053]
gi|257275713|gb|EEV07186.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257279348|gb|EEV09949.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus 68-397]
gi|257282267|gb|EEV12402.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus E1410]
gi|257284947|gb|EEV15066.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus M876]
gi|257788919|gb|EEV27259.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus A9781]
gi|257839056|gb|EEV63535.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus A9763]
gi|257842486|gb|EEV66910.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus A9719]
gi|257849427|gb|EEV73397.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus A9299]
gi|257852222|gb|EEV76149.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus A8115]
gi|257855382|gb|EEV78320.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus A6300]
gi|257857125|gb|EEV80024.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus A6224]
gi|257859451|gb|EEV82305.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus A5948]
gi|257863882|gb|EEV86638.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus A5937]
gi|259159759|gb|EEW44800.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
aureus 930918-3]
gi|259162352|gb|EEW46924.1| ribonucleotide-diphosphate reductase beta subunit [Staphylococcus
aureus D30]
gi|262074642|gb|ACY10615.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus ED98]
gi|269940309|emb|CBI48686.1| ribonucleoside-diphosphate reductase beta chain [Staphylococcus
aureus subsp. aureus TW20]
gi|282314359|gb|EFB44749.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus C101]
gi|282317659|gb|EFB48031.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus C427]
gi|282322604|gb|EFB52926.1| ribonucleoside-diphosphate reductase 2, beta subunit
[Staphylococcus aureus subsp. aureus M899]
gi|282325769|gb|EFB56077.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282327783|gb|EFB58065.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282331965|gb|EFB61476.1| ribonucleoside-diphosphate reductase beta subunit [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282591490|gb|EFB96562.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus A10102]
gi|282593686|gb|EFB98678.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus A9765]
gi|282596317|gb|EFC01278.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus C160]
gi|282763213|gb|EFC03344.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus A8117]
gi|283470026|emb|CAQ49237.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus ST398]
gi|283791015|gb|EFC29830.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus A017934/97]
gi|285816434|gb|ADC36921.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
[Staphylococcus aureus 04-02981]
gi|290921114|gb|EFD98175.1| ribonucleoside-diphosphate reductase 2, beta subunit
[Staphylococcus aureus subsp. aureus M1015]
gi|291095622|gb|EFE25883.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus 58-424]
gi|291467662|gb|EFF10177.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus M809]
gi|294823934|gb|EFG40360.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A9754]
gi|294968598|gb|EFG44621.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8819]
gi|295128697|gb|EFG58328.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296886796|gb|EFH25700.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|297177850|gb|EFH37099.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus A8796]
gi|297576637|gb|EFH95352.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus MN8]
gi|298694063|gb|ADI97285.1| ribonucleoside-diphosphate reductase [Staphylococcus aureus subsp.
aureus ED133]
gi|300886879|gb|EFK82081.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus TCH70]
gi|302332442|gb|ADL22635.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302750629|gb|ADL64806.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|304339753|gb|EFM05698.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|312438843|gb|ADQ77914.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus TCH60]
gi|312829224|emb|CBX34066.1| ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide
reductase small subunit) [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315129414|gb|EFT85407.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus CGS03]
gi|315194351|gb|EFU24743.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus CGS00]
gi|315196404|gb|EFU26755.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus CGS01]
gi|320139937|gb|EFW31798.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus MRSA131]
gi|320141974|gb|EFW33802.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus MRSA177]
gi|323438919|gb|EGA96654.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus O11]
gi|323441867|gb|EGA99507.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
aureus O46]
gi|329313453|gb|AEB87866.1| Ribonucleoside-diphosphate reductase class Ib beta subunit
[Staphylococcus aureus subsp. aureus T0131]
gi|329724628|gb|EGG61135.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus 21172]
gi|329728537|gb|EGG64970.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus 21189]
Length = 323
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 59/308 (19%), Positives = 119/308 (38%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ L++ E+ K+ L ++ A++ + +
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKKALAGLTGLDTHQADDGMPLV 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + A E +H+ ++ +I T+L + + V
Sbjct: 73 MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPH----LKY 128
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ + + K+A V V E F++GF L L KM E
Sbjct: 129 KSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E ++ Q+ +L++ L E +Y
Sbjct: 189 RKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
+G+ Y+++ N+ +G EP F+ E NP + +D + +FF +
Sbjct: 247 LGIT-EDVLNYVKYNGNKALSNLGFEPYFEEREFNPI--IENALDTTTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YVLALNVE 311
>gi|329769048|ref|ZP_08260470.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325]
gi|328839539|gb|EGF89115.1| ribonucleoside-diphosphate reductase [Gemella sanguinis M325]
Length = 322
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 60/311 (19%), Positives = 111/311 (35%), Gaps = 19/311 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ TE + D+ W L D ER K+ L ++ + + +
Sbjct: 16 YWRQNIAQFWVDTEFKVSKDIKSWNE--DLNDKERDAYKKVLAGLTGLDTQQGDKGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANW 161
H + + E +H+ ++ I TSL + + + KAN
Sbjct: 74 SLHTEDMRKQAVYSFMGMMEQMHAKSYSTIFTSLIPSKETDYLLDEWVPNNAELQYKANL 133
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
Y L P T V V E FY+GF L L K+
Sbjct: 134 IESYYMKLFKPEVKTYDL-------YMARVASVFLESYIFYSGFFYPLYLAGQGKVTTSG 186
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E + I+ DE++H +F +I ++ +++ +L + E+ Y +
Sbjct: 187 EIIRKILLDETIHGSFTGFDAQEIFKTLTKEEQEKAKKEMYKLLLDLYENELKYTQDIY- 245
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETR 339
G +GL + Y+++ ANR +G F+ + NP + ++ K +FF +
Sbjct: 246 -GEIGL-YDEVKDYVEYNANRALANLGYPGYFEDKDINPI--IENAMNTSTKNHDFFSVK 301
Query: 340 VTEYQQGAELK 350
Y ++
Sbjct: 302 GDGYVVSMNVE 312
>gi|242242101|ref|ZP_04796546.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
epidermidis W23144]
gi|242234414|gb|EES36726.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
epidermidis W23144]
gi|319401190|gb|EFV89405.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
epidermidis FRI909]
Length = 322
Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats.
Identities = 67/308 (21%), Positives = 120/308 (38%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ LTD E+ K+ L ++ A++ + I
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LTDSEKNTFKKALAGLTGLDTHQADDGMPLI 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + A E +H+ ++ +I T+L + + V
Sbjct: 73 MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWVIEEPH----LKY 128
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ + K+A V V E FY+GF L L KM E
Sbjct: 129 KSDKIVENYHKLWGKEASIYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E ++ Q+ +L+E E++Y H
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEMYKLLNELYDNEVSYTHLLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
+GL A Y+++ N+ +G EP F+ E NP + +D K +FF +
Sbjct: 247 IGL-ADDVLNYVRYNGNKALSNLGFEPYFEEREFNPI--IENALDTSTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YTLALNVE 311
>gi|282916074|ref|ZP_06323837.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus D139]
gi|283769895|ref|ZP_06342787.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus H19]
gi|282320022|gb|EFB50369.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus D139]
gi|283460042|gb|EFC07132.1| ribonucleoside-diphosphate reductase subunit beta [Staphylococcus
aureus subsp. aureus H19]
Length = 323
Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats.
Identities = 59/308 (19%), Positives = 119/308 (38%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ L++ E+ K+ L ++ A++ + +
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKKALAGLTGLDTHQADDGMPLV 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + A E +H+ ++ +I T+L + + V
Sbjct: 73 MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPH----LKY 128
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ + + K+A V V E F++GF L L KM E
Sbjct: 129 KSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E ++ Q+ +L++ L E +Y
Sbjct: 189 RKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
+G+ Y+++ N+ +G EP F+ E NP + +D + +FF +
Sbjct: 247 LGIT-EDVLNYVKYNGNKALSNLGFEPYFEEREFNPI--IENALDTTTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YVLALNVE 311
>gi|37651592|ref|NP_932466.1| hypothetical protein 44RRORF111c [Aeromonas phage 44RR2.8t]
gi|66391913|ref|YP_238838.1| hypothetical protein PHG31p109 [Aeromonas phage 31]
gi|34732892|gb|AAQ81430.1| hypothetical protein 44RRORF111c [Aeromonas phage 44RR2.8t]
gi|62114750|gb|AAX63598.1| hypothetical protein PHG31p109 [Aeromonas phage 31]
Length = 323
Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats.
Identities = 54/327 (16%), Positives = 105/327 (32%), Gaps = 32/327 (9%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG-FFASSESL 95
++Y + W E + +D ++ LT E I L F +
Sbjct: 10 IRYPEFAALADEQMHAFWPWDEPVVDNDAQDLRT--KLTPGELNGITTVLKLFTIYERKV 67
Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
+ I R PE + + E H+ + + L LD+ + ++E
Sbjct: 68 GEDYWTGRIARTFGRPEINRMATLFSAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKESEE 127
Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL--- 211
++ + + + ++S P F + EG Y+ FA +
Sbjct: 128 LSRRIQFVGK---SVSDPDDA------------KSFAAFTFIEGAVLYSSFAFLKHFQAQ 172
Query: 212 -GRANKMVGIAEQYQYIMRDESLH----LNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
+ M I + DE H + ++ + ++ + M H
Sbjct: 173 ECGKDLMRNICRGVDLSVADEHHHSIGGAMLFRTLCREMMEHHKVDVREKLKDDIIAMAH 232
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSE 325
+ E + G+ A +++ N +G +P+F+ NP W
Sbjct: 233 QVYDHESGIIDLVFAEPIDGITADELRIFVKSRINLCLENLGYDPIFEIESNPIASWFYR 292
Query: 326 VIDLKKEKNFFETRVTEYQQGAELKWD 352
I+ KK +FF +EY + WD
Sbjct: 293 TINAKKFHDFFTGSGSEYN----INWD 315
>gi|332018842|gb|EGI59398.1| Ribonucleoside-diphosphate reductase subunit M2 [Acromyrmex
echinatior]
Length = 176
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 3/145 (2%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
++ + GL ++ N + +L + + P++Y W+ Y A + W EV
Sbjct: 33 ISQDHGLKNGVQLKEDFNPKLEPLLQEGPNRFVIFPIQYPDIWDMYKKAVASFWTIEEVS 92
Query: 61 MQD-DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
+ D W L DE+ I L FFA+S+ +V N++ + + PE R +
Sbjct: 93 LHKQDKKDWNE--KLNSDEKRFISHVLAFFAASDGIVNENLIEKFSQEVKIPEARCFYGF 150
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGE 144
Q E +HS + +I + D E
Sbjct: 151 QIAIENIHSEMYSLLIETYISDPKE 175
>gi|258423381|ref|ZP_05686272.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus A9635]
gi|257846442|gb|EEV70465.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus A9635]
Length = 323
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 59/308 (19%), Positives = 119/308 (38%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ L++ E+ K+ L ++ A++ + +
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LSEAEQDTFKKALAGLTGLDTHQADDGMPLV 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + A E +H+ ++ +I T+L + + V
Sbjct: 73 MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDVWVLEEPH----LKY 128
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ + + K+A V V E F++GF L L KM E
Sbjct: 129 KSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E ++ Q+ +L++ L E +Y
Sbjct: 189 RKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
+G+ Y+++ N+ +G EP F+ E NP + +D + +FF +
Sbjct: 247 LGIT-EDVLNYVKYNGNKALSNLGFEPYFEEREFNPI--IENALDTTTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YVLALNVE 311
>gi|304373441|ref|YP_003856650.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma
hyorhinis HUB-1]
gi|304309632|gb|ADM22112.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma
hyorhinis HUB-1]
gi|330723642|gb|AEC46012.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
hyorhinis MCLD]
Length = 344
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 63/358 (17%), Positives = 127/358 (35%), Gaps = 39/358 (10%)
Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
+SP++ + N + + + N + K W N W+P ++P+ +D
Sbjct: 15 ESVSPLEFALNKFNGKMRSV-----NWNVINDNKDLEVWN---RVVQNFWLPEKIPVSND 66
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
L W++ L+ + +I R +++ A +A + + AF
Sbjct: 67 LETWRT---LSPTWKRVITRTFTGLTLLDTIQATIGDVAQIPYSQTDHEQVIYANFAFMV 123
Query: 125 AVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
VH+ ++ I ++L E E S+ A+A + Y
Sbjct: 124 GVHARSYGTIFSTLCTSEEIEEAHEWVINTKSLQARAQALIPYYTGKD------------ 171
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
V + G Y GF L +K+ ++ + I+RD+ +H +
Sbjct: 172 ---PLKSKVAAAMMPGFLLYGGFYLPFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKY 228
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
+ + P +E ++ +L+E LE Y +E + VGL + + + + A +
Sbjct: 229 QKKVEKLPLKKQEEMKKFVFDLLYELIDLEKTYLNELYSE--VGLAEEAIK-FSVYNAGK 285
Query: 303 RCHQIGLEPLFKYTENPF-PWMSEVID--LKKEKNFFETRVTEYQQGAELK-----WD 352
+G + F E P + + + +FF + Y G + WD
Sbjct: 286 FLQNLGYDSPFTEEETRIEPEIFNQLSARADENHDFFSGNGSSYVMGVSEETEDEDWD 343
>gi|170587050|ref|XP_001898292.1| ribonucleotide reductase 2 [Brugia malayi]
gi|158594687|gb|EDP33271.1| ribonucleotide reductase 2, putative [Brugia malayi]
Length = 288
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/224 (18%), Positives = 79/224 (35%), Gaps = 4/224 (1%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
R + + +L + + P+K+ W+ Y A + W EV + D W
Sbjct: 33 ETATTTVRYESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKDYRDW 92
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ L D ER I R L FFA+S+ +V N+V + + PE R + Q E +HS
Sbjct: 93 E---NLNDGERHFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENIHS 149
Query: 129 HTFQYIITSLGLDE-GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
+ +I + D+ + F + + ++ + + +
Sbjct: 150 EMYSKMIDTYIRDQKQKKFRKFCVTLCFLEINLSNYKKFTSMFNACIDAKQEYLTEALPV 209
Query: 188 DLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
DL + +L+ K+ + ++ R
Sbjct: 210 DLIGINCKLMCQYIEYVADHLLTELHCAKIYHSDNPFDFMERIS 253
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/250 (16%), Positives = 90/250 (36%), Gaps = 18/250 (7%)
Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN----WALQYTQTLSS 171
+ V + I+ + + +F + K W +
Sbjct: 29 CGTYETATTTVRYESNGEILLAENPNRFVIFPIKFHDIWDFYKKALASFWTVDEVDLSKD 88
Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWF---YTGFAQILSLGRANKMVGIAEQYQYIM 228
D ++ F+ + F+ +G+ F+Q + + A G + I
Sbjct: 89 YRDWENLNDGERHFISRVLAFFAASDGIVNENLVNRFSQEVQVPEARFFYGFQIMIENI- 147
Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEF--------QQKSRTMLHEATLLEIAYAHETM 280
E + +Q + + +K +M + + Y E +
Sbjct: 148 HSEMYSKMIDTYIRDQKQKKFRKFCVTLCFLEINLSNYKKFTSMFNACIDAKQEYLTEAL 207
Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRV 340
P +G+N QY++++A+ ++ ++ +++NPF +M E I ++ + NFFE RV
Sbjct: 208 PVDLIGINCKLMCQYIEYVADHLLTELHCAKIY-HSDNPFDFM-ERISIEAKTNFFEKRV 265
Query: 341 TEYQQGAELK 350
+EYQ+ L
Sbjct: 266 SEYQKAGVLS 275
>gi|148543559|ref|YP_001270929.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
reuteri DSM 20016]
gi|184152966|ref|YP_001841307.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
reuteri JCM 1112]
gi|227363481|ref|ZP_03847603.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
reuteri MM2-3]
gi|325681909|ref|ZP_08161427.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
reuteri MM4-1A]
gi|148530593|gb|ABQ82592.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Lactobacillus reuteri DSM 20016]
gi|183224310|dbj|BAG24827.1| ribonucleotide diphosphate reductase beta subunit [Lactobacillus
reuteri JCM 1112]
gi|227071495|gb|EEI09796.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
reuteri MM2-3]
gi|324978553|gb|EGC15502.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
reuteri MM4-1A]
Length = 339
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 66/328 (20%), Positives = 118/328 (35%), Gaps = 30/328 (9%)
Query: 31 VNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
VNQ + + + + W+ T +P+ +D+ W+ L DD + +
Sbjct: 9 VNQYKAINWNEVSDMIDKATWEKLTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHV 65
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
G +++ + + A+ + P L F E+VH+ ++ I ++L +
Sbjct: 66 FGGLTLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIK 125
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E+F + KA S V V E FY+
Sbjct: 126 EIFEWSDTEEYLQNKAVKIANMYLDPSQDPLKKK-------------VANVFLETFLFYS 172
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L NK+ +AE + I+RDES+H + + ++ +
Sbjct: 173 GFYTPLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGLRDRTEKQQQDMKDWMYN 232
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
L+E E Y H + VG ++++ AN+ +G +PLF T NP
Sbjct: 233 FLYELYDNEEKYTHLLYDQ--VGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPV 289
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
M+ + +FF Y+ GA
Sbjct: 290 V-MNGISTSTSNHDFFSQVGNGYRMGAV 316
>gi|329738368|gb|AEB97332.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 1]
Length = 310
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 60/313 (19%), Positives = 115/313 (36%), Gaps = 20/313 (6%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
E + N+W E+ D + LT +E K F A+++ L+
Sbjct: 16 DDIRELRDLSIANNWNEFELCYSRDEKD---VDLLTPEELDFYKFVFAFLAAADDLIN-L 71
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
+ + + + + Y Q E VHS T+ + L + + + K
Sbjct: 72 DIGNLMTLFPHKDIQHYYAEQIRIETVHSRTYSLVQMILFKGDLHARD---RYVTEAIKD 128
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
+ L+ T ++ L L EG++F FA I L R N V
Sbjct: 129 PAIKKKIDWLNRVQVETDLTLPEKYILMILL------EGIFFVASFAAIAFLRRRNIFVV 182
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE++H + N ++ K ++ + EA +E +
Sbjct: 183 MCQSNDLISRDEAVHTTASCRIYNNWLGDHK----KPSAKRIHQLFKEAIEIECNFLASR 238
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKKEKNFFET 338
P+ ++ + + ++++ +R IG+ +F +P + ++ + K NFFE
Sbjct: 239 APQASRLIDLEAIQSFVRYSGDRLLTAIGVPTIFDEPPPDP-SFPLTLMSIDKNVNFFEH 297
Query: 339 RVTEYQQGAELKW 351
R T Y G +
Sbjct: 298 RSTAYN-GNVIND 309
>gi|172039808|ref|YP_001799522.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
urealyticum DSM 7109]
gi|171851112|emb|CAQ04088.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
urealyticum DSM 7109]
Length = 334
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/308 (17%), Positives = 112/308 (36%), Gaps = 33/308 (10%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
E +L N W+P +VP+ +DL W N L+D ER + R +++ A ++
Sbjct: 37 EVWLRLTANFWLPEKVPLSNDLPDW---NRLSDLERTLTMRVFTGLTLLDTMQATVGEIS 93
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
+ AF +AVH+ ++ + ++L + ++ + + +
Sbjct: 94 QIQDALTEHEEAVYTNIAFMQAVHARSYSSVFSTLSSTPAINDAYDWAVKNEVLQTRCRK 153
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
L + V + + Y GF L + A
Sbjct: 154 VLVHYFGED---------------PLKRKVSATLLSSVLLYAGFYLPLHFSTRGVLSNTA 198
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I+RD+++H + + +P E + +L E LE+ Y+ E
Sbjct: 199 DMIRLILRDKAVHGYYSGYKFQRGIERHPE-RAAELSDFTHELLEELYQLELEYSTELYE 257
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI------DLKKEKNF 335
GL E+++++ AN+ +G P++ +E +S I + +F
Sbjct: 258 --PFGL-MADVERFVKYNANKALMNLGYTPIYPGSETS---VSPEILSALTPGADENHDF 311
Query: 336 FETRVTEY 343
F + Y
Sbjct: 312 FSGSGSSY 319
>gi|48696469|ref|YP_024511.1| putative ribonucleotide reductase minor subunit [Staphylococcus
phage K]
gi|37729163|gb|AAO47530.1| ORF81 [Staphylococcus phage K]
gi|119658118|gb|ABL87153.1| putative ribonucleotide reductase minor subunit [Staphylococcus
phage 812]
gi|182627942|gb|ACB89104.1| gp ORF111 [Staphylococcus phage A5W]
Length = 349
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 61/345 (17%), Positives = 122/345 (35%), Gaps = 27/345 (7%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWE-KYLSACNNHWMPTEVPMQDDLALWKSKN 72
++V +K + ++ N ++ + + + W P E + DL+ W S
Sbjct: 4 TQKVKQHNKNAVLKATNWN----IEDDGMSDIYWEQGISQFWTPEEFDVSRDLSSWNS-- 57
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
LT+ E+ K+ L ++ + + H P+ + E +H+ ++
Sbjct: 58 -LTESEKNTYKKVLAGLTGLDTKQGGEGMNLVSYHEPRPKYQAVFAFMGGMEEIHAKSYS 116
Query: 133 YIITSLGLDEGELF---NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
+I T+L ++ + E + KA + Y L P+ T +
Sbjct: 117 HIFTTLLSNKETSYLLDTWVEENDFLKVKAQFIGYYYDQLLKPNPTIFDR-------YMA 169
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
V E FY+GF L L +M I +DE+ H +
Sbjct: 170 KVASAFLESALFYSGFYYPLLLAGRGQMTQSGAIIYKITQDEAYHGSAVGLTAQYDYNLL 229
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
K+ +++ +L E+AY H + + Y+Q+ NR +G
Sbjct: 230 TEEEKKQADKETYELLDILYTNEVAYTHSLYDPLEL---SEDVINYVQYNFNRALQNLGR 286
Query: 310 EPLFKYTE-NPFPWMSEVIDLK--KEKNFFETRVTEYQQGAELKW 351
E F NP + ++ + +FF + +Y++ +K
Sbjct: 287 EDYFNPEPYNPI--VENQTNVDRLRNVDFFSGKA-DYEKSTNIKD 328
>gi|329729655|gb|EGG66056.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
aureus subsp. aureus 21193]
Length = 323
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 59/308 (19%), Positives = 119/308 (38%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ TE + D+A WK+ L++ E+ K+ L ++ A++ + +
Sbjct: 16 FWRQNISQMWVETEFKVSKDIASWKT---LSETEQDTFKKALAGLTGLDTHQADDGMPLV 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H ++ + A E +H+ ++ +I T+L + + V
Sbjct: 73 MLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPH----LKY 128
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ + + K+A V V E F++GF L L KM E
Sbjct: 129 KSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E ++ Q+ +L++ L E +Y
Sbjct: 189 RKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDD-- 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTE 342
+G+ Y+++ N+ +G EP F+ E NP + +D + +FF +
Sbjct: 247 LGIT-EDVLNYVKYNGNKALSNLGFEPYFEEREFNPI--IENALDTTTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YVLALNVE 311
>gi|269302771|gb|ACZ32871.1| ribonucleoside-diphosphate reductase beta subunit, truncated
[Chlamydophila pneumoniae LPCoLN]
Length = 159
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 90/143 (62%), Positives = 112/143 (78%), Gaps = 2/143 (1%)
Query: 10 IQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ KRV V K ++N DVNQL+P+KY WAWE YL+ C N+W+PTEVPM D+ LW
Sbjct: 6 LDGKLKRVEVSKKGLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEVPMARDIELW 65
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 66 KS-DELSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHITNPEARQYLLRQAFEEAVHT 124
Query: 129 HTFQYIITSLGLDEGELFNMYRE 151
HTF YI SLGLDEGE+FN Y E
Sbjct: 125 HTFLYICESLGLDEGEVFNAYNE 147
>gi|194468106|ref|ZP_03074092.1| Ribonucleoside-diphosphate reductase [Lactobacillus reuteri 100-23]
gi|194452959|gb|EDX41857.1| Ribonucleoside-diphosphate reductase [Lactobacillus reuteri 100-23]
Length = 339
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 66/328 (20%), Positives = 118/328 (35%), Gaps = 30/328 (9%)
Query: 31 VNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
VNQ + + + + W+ T +P+ +D+ W+ L DD + +
Sbjct: 9 VNQYKAINWNEVSDMIDKATWEKLTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHV 65
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
G +++ + + A+ + P L F E+VH+ ++ I ++L +
Sbjct: 66 FGGLTLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIK 125
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E+F + KA S V V E FY+
Sbjct: 126 EIFEWSDTEEYLQNKAVKIANMYLDPSQDPLKKK-------------VANVFLETFLFYS 172
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L NK+ +AE + I+RDES+H + + ++ +
Sbjct: 173 GFYTPLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGLRDRTEKQQQDMKDWMYN 232
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
L+E E Y H + VG ++++ AN+ +G +PLF T NP
Sbjct: 233 FLYELYDNEEKYTHLLYDQ--VGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPV 289
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
M+ + +FF Y+ GA
Sbjct: 290 V-MNGISTSTSNHDFFSQVGNGYRMGAV 316
>gi|30984468|ref|NP_851900.1| ribonucleotide reductase subunit 2 [Macacine herpesvirus 1]
gi|28804676|dbj|BAC58080.1| ribonucleotide reductase small subunit [Cercopithecine herpesvirus
1]
gi|30844282|gb|AAP41458.1| small subunit of ribonucleotide reductase [Macacine herpesvirus 1]
Length = 338
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 73/308 (23%), Positives = 117/308 (37%), Gaps = 32/308 (10%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ +E+ D +GLTDDE + F ++++ LV N + +
Sbjct: 54 NRWLESELVFAGDEED---VHGLTDDELNFYRFLFTFLSAADDLVTEN-LGGLSGLFPQK 109
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E + P+I K W Q
Sbjct: 110 DILHYYVEQEAIEVVHSRVYSIIQLVLFHNNEQARREYVSRTIHHPAIRVKVEWLEARVQ 169
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
S F+ ++ EG++F FA I L N + + I
Sbjct: 170 ACESVPEK--------------FILMILIEGIFFAASFAAIGFLRTNNLLRVTCQSNDLI 215
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K ++ + EA +EI + P L
Sbjct: 216 SRDEAVHTTASCYIYNNYL----GGHRKPTAERVYRLFREAVDIEIGFIRSQAPANSRVL 271
Query: 288 NA---PSCEQYMQFIANRRCHQIGLEPLFKYTENPFP-WMSEVIDLKKEKNFFETRVTEY 343
+A + E Y++F A+R I ++PLF P P + ++ +K NFFE R T Y
Sbjct: 272 DAAALDAIENYVRFSADRLLVLIKMKPLFGAPA-PAPSFPLSLMSTEKHTNFFECRSTAY 330
Query: 344 QQGAELKW 351
GA +
Sbjct: 331 A-GAVVND 337
>gi|227545165|ref|ZP_03975214.1| ribonucleoside-diphosphate reductase [Lactobacillus reuteri
CF48-3A]
gi|300909160|ref|ZP_07126621.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
reuteri SD2112]
gi|227184848|gb|EEI64919.1| ribonucleoside-diphosphate reductase [Lactobacillus reuteri
CF48-3A]
gi|300893025|gb|EFK86384.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
reuteri SD2112]
Length = 339
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 66/328 (20%), Positives = 118/328 (35%), Gaps = 30/328 (9%)
Query: 31 VNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
VNQ + + + + W+ T +P+ +D+ W+ L DD + +
Sbjct: 9 VNQYKAINWNEVSDMIDKATWEKLTEQFWLDTRIPVANDMDDWRE---LDDDHQWTVGHV 65
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
G +++ + + A+ + P L F E+VH+ ++ I ++L +
Sbjct: 66 FGGLTLLDTVQSEAGLTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIK 125
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E+F + KA S V V E FY+
Sbjct: 126 EIFEWSDTEEYLQNKAVKIANMYLDPSQDPLKKK-------------VANVFLETFLFYS 172
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L NK+ +AE + I+RDES+H + + ++ +
Sbjct: 173 GFYTPLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGLRDRTEKQQQDMKDWMYN 232
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
L+E E Y H + VG ++++ AN+ +G +PLF T NP
Sbjct: 233 FLYELYDNEEKYTHLLYDQ--VGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPV 289
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAE 348
M+ + +FF Y+ GA
Sbjct: 290 V-MNGISTSTSNHDFFSQVGNGYRMGAV 316
>gi|124487872|gb|ABN12019.1| putative ribonucleotide reductase R2 subunit [Maconellicoccus
hirsutus]
Length = 249
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 24/233 (10%)
Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYRE 151
+V +N+V + + PE R + Q +HS + +I SL D E +FN
Sbjct: 1 IVNDNLVKRFSQEVQVPEARAFFGFQISNAGIHSEMYSVLIESLIKDANEKNLIFNTIET 60
Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
VP + K +W L+ D F + + EG++F G A I L
Sbjct: 61 VPCVKKKKDWVLRRI------------ADDRVTFPLKVVA-FATVEGIFFAGGAAAIFWL 107
Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
M G+ + I + ESL+ +F + ++ + ++ ++ EA ++
Sbjct: 108 QEKGVMPGLTLSNELIRKGESLYTDFACLLFKRLVQ-------RPSVEEITEIIREAVII 160
Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS 324
E ++ + +P +G++ Y++F+A+R + +F NPF +M
Sbjct: 161 EQEFSTKGLPVSLIGMDCELMTTYIEFVADRLLQALNCPKVFGV-PNPFGFME 212
>gi|57790965|ref|YP_182369.1| ribonucleotide reductase subunit 2 [Gallid herpesvirus 1]
gi|5918981|gb|AAD56212.1|AF168792_13 ribonucleotide reductase small subunit [Gallid herpesvirus 1]
Length = 310
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 60/313 (19%), Positives = 115/313 (36%), Gaps = 20/313 (6%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
E + N+W E+ D + LT +E K F A+++ L+
Sbjct: 16 DDIRELRDLSIANNWNEFELCYSRDEKD---VDLLTPEELDFYKLVFAFLAAADDLIN-L 71
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
+ + + + + Y Q E VHS T+ + L + + + K
Sbjct: 72 DIGNLMTLFLHKDIQHYYAEQIRIETVHSRTYSLVQMILFKGDLHARD---RYVTEAIKD 128
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
+ L+ T ++ L L EG++F FA I L R N V
Sbjct: 129 PAIKKKIDWLNRVQVETDLTLPEKYILMILL------EGIFFVASFAAIAFLRRRNIFVV 182
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + I RDE++H + N ++ K ++ + EA +E +
Sbjct: 183 MCQSNDLISRDEAVHTTASCRIYNNWLGDHK----KPSAKRIHQLFKEAIEIECNFLASR 238
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKKEKNFFET 338
P+ ++ + + ++++ +R IG+ +F +P + ++ + K NFFE
Sbjct: 239 APQASRLIDLEAIQSFVRYSGDRLLTAIGVPTIFDEPPPDP-SFPLTLMSIDKNVNFFEH 297
Query: 339 RVTEYQQGAELKW 351
R T Y G +
Sbjct: 298 RSTAYN-GNVIND 309
>gi|13242410|ref|NP_077433.1| ribonucleotide reductase subunit 2 [Cercopithecine herpesvirus 9]
gi|11036562|gb|AAG27191.1|AF275348_11 ribonucleotide reductase, small subunit [Cercopithecine herpesvirus
9]
Length = 311
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 35/320 (10%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
E + +N W+ T+ ++DD ++ LT++E K F ++++ LV N
Sbjct: 18 PDINELRSLSISNRWLETDFTLEDD---YQYIKCLTEEELSFYKFIFTFLSAADDLVNVN 74
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ----YIITSLGLDEGELFNMYREVPSI 155
+ ++ + Y L Q E VHS + + + + I
Sbjct: 75 -IGSLITLFKQKDIHHYYLEQECIEVVHSRIYSQIQLMLFEGDIFERLRYTEATIQDAYI 133
Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
AK +W + + ++ ++ EG++F + FA I
Sbjct: 134 KAKVDW--------------LEYNVQMNPLIGEKYILMIIIEGIFFTSSFAAISYFRNNG 179
Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
V + + I RDE++H + + N K + + EA +E +
Sbjct: 180 LFVVMCQLNDLISRDEAVHTSASCCIYNNYI----SYKEKPAIPRIHQLFMEAVNIECNF 235
Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKK 331
PK +N + QY+++ A+R I + LF + P +M+ +K
Sbjct: 236 ISAYAPKNQRIINIDAILQYVRYNADRLLSAINIPVLFNAPAPKADFPLAFMT----AEK 291
Query: 332 EKNFFETRVTEYQQGAELKW 351
NFFE T Y GA +
Sbjct: 292 HTNFFERHSTAY-TGAVIND 310
>gi|116333244|ref|YP_794771.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
brevis ATCC 367]
gi|116098591|gb|ABJ63740.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Lactobacillus brevis ATCC 367]
Length = 331
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 58/302 (19%), Positives = 109/302 (36%), Gaps = 24/302 (7%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W++ L D + ++ G ++L + + + A+
Sbjct: 24 WEKLTEQFWLDTRIPVSNDLDDWRT---LDTDHQWVVGHVFGGLTLLDTLQSQDGMAALR 80
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
R + P L F E+VH+ ++ I ++L + E+F + K
Sbjct: 81 RDIRTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIDEIFQWSDSEEFLQNKTKRIY 140
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
P + V E FY+GF L NK+ +AE
Sbjct: 141 DLYHDDEHPLKKK--------------ISSVFLETFLFYSGFFTPLYYLGHNKLNNVAEI 186
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E ++ + L++ E Y H +
Sbjct: 187 IKLILRDESVHGTYIGYKFQLGMKELTDAEQQQMKDWMYDFLYQLYDNEEKYTHTLYDQ- 245
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSEVIDLKKEKNFFETRVT 341
+G ++++ AN+ +G +PLF T M+ + +FF
Sbjct: 246 -IGWT-EKVLTFIRYNANKALMNLGQDPLFPDTAEDVDPVVMNGISTSTANHDFFSQVGN 303
Query: 342 EY 343
Y
Sbjct: 304 GY 305
>gi|319957101|ref|YP_004168364.1| ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM
16511]
gi|319419505|gb|ADV46615.1| Ribonucleoside-diphosphate reductase [Nitratifractor salsuginis DSM
16511]
Length = 337
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 74/338 (21%), Positives = 141/338 (41%), Gaps = 23/338 (6%)
Query: 21 DKRMLNARSDVNQ-LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
D+++ +Y W+ Y N W P+EV ++ + + LTD+E+
Sbjct: 16 DEKIYGGNPTGFVDFNRPRYKWSVNLYDLMNANTWFPSEVNTANEKKHF---DLLTDNEQ 72
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
+ K + ++S + R +N + L Q +E HS ++ ++ + G
Sbjct: 73 AIYKLTFAQLSFNDS-AQEEYLSDFRRLANNRLVKAALSLQIMQEVNHSKSYAVLLDAAG 131
Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
+ E+F++Y+ ++ K + F E + + V EG+
Sbjct: 132 NSD-EVFDLYKHDAALNRK--------NQRIANQFARYIDGNSAEEMLLSAMASVNLEGI 182
Query: 200 WFYTGFAQILSLGRANKMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKIENPHLWTKEFQ 258
+F GF+ I LG +K+ G + ++I RDE + HL ++ I EN + +
Sbjct: 183 YFLLGFSYIYVLG--DKVPGARDMIKFIARDEINTHLPLFANIFKTIYKENKIPASIVDK 240
Query: 259 QKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
M+ EA +E+ Y + +GL E+ + AN R ++IGLEP+F+ T
Sbjct: 241 A--YEMIQEAVDIELEYGKYLLENYPIMGLTDELMEKTVYNYANDRLNKIGLEPIFEETP 298
Query: 318 NPF--PWMSEVIDLKKE-KNFFETRVTEYQQGAELKWD 352
+ + + + + NFFE+ V Y + + D
Sbjct: 299 QTYLQKLVEKHLKMNDVRSNFFESNVANYAKNSLDLDD 336
>gi|281491477|ref|YP_003353457.1| ribonucleoside-diphosphate reductase subunit beta [Lactococcus
lactis subsp. lactis KF147]
gi|281375195|gb|ADA64708.1| Ribonucleoside-diphosphate reductase, beta chain [Lactococcus
lactis subsp. lactis KF147]
Length = 325
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 64/303 (21%), Positives = 110/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ + W+ T VP+ +DL W+ L ER + ++L + + +
Sbjct: 30 WEKLTSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGLTLLDTLQSVDGAEVLK 86
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
P+ F E+VH+ ++ I ++L + ELFN + KA
Sbjct: 87 HDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFNWVDTNVYMQTKAEIIN 146
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ ++ + V E FY+GF L NKM+ AE
Sbjct: 147 KIYESGTPLQKKV---------------ASVFLETCLFYSGFYTPLRYLGNNKMINSAEI 191
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E EF+ +L++ E Y+H K
Sbjct: 192 IKLIIRDESVHGTYIGYKFQLGFNELSEDEQGEFRDWMYELLYQLYENEEKYSHLLYDK- 250
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 251 -VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTAADVNPVV-MNGISTSSSNHDFFSQVG 307
Query: 341 TEY 343
Y
Sbjct: 308 NSY 310
>gi|229823057|ref|ZP_04449126.1| hypothetical protein GCWU000282_00352 [Catonella morbi ATCC 51271]
gi|229787496|gb|EEP23610.1| hypothetical protein GCWU000282_00352 [Catonella morbi ATCC 51271]
Length = 336
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/303 (18%), Positives = 107/303 (35%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W++ L+ ER ++ + G ++L + +
Sbjct: 39 WEKLTEQFWLDTRIPVSNDLDDWRT---LSMAERDVVAKAFGGLTLLDTLQSEEGAALMK 95
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ F E+VH+ ++ I ++L E+F + KA
Sbjct: 96 DFVRTQHEEAVWNNIQFMESVHAKSYSTIFSTLNTKAEIEEIFEWTNTNEQLQYKAKKIN 155
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ Q+ + + E FY+GF L NK+ +AE
Sbjct: 156 EIYQS---------------GHGLKIKAASTMLETFLFYSGFFTPLYYLGNNKLANVAEI 200
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P E + + + E Y +
Sbjct: 201 IKLIIRDESVHGTYTGYKFQLGYNELPEDQQAELKMWVYELCMDLYQNEAKYTQSLYDQ- 259
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG + ++++ AN+ +G +PLF +P M+ + +FF
Sbjct: 260 -VGWT-EKVKVFIRYNANKALQNLGFDPLFPDTAEDVDPIV-MNGISTGTSNHDFFSQVG 316
Query: 341 TEY 343
Y
Sbjct: 317 NGY 319
>gi|116511803|ref|YP_809019.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
lactis subsp. cremoris SK11]
gi|125624347|ref|YP_001032830.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
lactis subsp. cremoris MG1363]
gi|116107457|gb|ABJ72597.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Lactococcus lactis subsp. cremoris SK11]
gi|124493155|emb|CAL98119.1| ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis
subsp. cremoris MG1363]
gi|300071131|gb|ADJ60531.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
lactis subsp. cremoris NZ9000]
Length = 325
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 64/303 (21%), Positives = 111/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ + W+ T VP+ +DL W+ L ER + ++L + + +
Sbjct: 30 WEKLTSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGLTLLDTLQSVDGAEVLK 86
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
P+ F E+VH+ ++ I ++L + ELFN + KA
Sbjct: 87 HDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFNWVDTNVYMQTKAEIIN 146
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ ++ ++ V E FY+GF L NKM+ AE
Sbjct: 147 KIYESGTALQKKV---------------ASVFLETCLFYSGFYTPLLYLGNNKMINSAEI 191
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E EF+ +L++ E Y+H K
Sbjct: 192 IKLIIRDESVHGTYIGYKFQLGFNELSEDEQSEFRDWMYELLYKLYENEENYSHLLYDK- 250
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 251 -VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTAADVNPVV-MNGISTSSSNHDFFSQVG 307
Query: 341 TEY 343
Y
Sbjct: 308 NSY 310
>gi|325284717|ref|YP_004264180.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus
MRP]
gi|324316206|gb|ADY27320.1| Ribonucleoside-diphosphate reductase [Deinococcus proteolyticus
MRP]
Length = 348
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 59/305 (19%), Positives = 110/305 (36%), Gaps = 22/305 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y + W P E+P+ +D +WKS L++ ER + ++L + A+
Sbjct: 24 FYEKYTSQLWFPEEIPLSNDAIVWKS---LSEAERWTYIHASAGLNALDTLQGEVGMPAL 80
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
+ + + Q E +H+ ++ + + +E E+F R P + K
Sbjct: 81 RHLVDGHIRKATIQFQGMMEDIHAKSYSLMNKTFLTTSEEREVFEWVRTQPQLQNKIAMI 140
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+ + K V + E FY+GF L L +MV E
Sbjct: 141 REIYDNPDVSNLGLWKK----------MVVSCMLETALFYSGFFYPLYLAGQGRMVSAGE 190
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
+ I+ DE++H + + + E L + E+AY
Sbjct: 191 IFNLIIMDEAVHGVYVALLAQEKFAEMNEAEQAYALAWYEETLMKLYRNELAYTEMLYAD 250
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340
VGL ++++++ N +G+E F+ E NP + I K +FF +
Sbjct: 251 --VGL-VDEVKKFIRYNCNVLADNLGVERSFEDEEINPI--VRNGIKAKGTTHDFFSAKG 305
Query: 341 TEYQQ 345
Y +
Sbjct: 306 NSYAK 310
>gi|199598384|ref|ZP_03211803.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
rhamnosus HN001]
gi|199590703|gb|EDY98790.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
rhamnosus HN001]
Length = 326
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 63/314 (20%), Positives = 120/314 (38%), Gaps = 29/314 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + ++
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGMASLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+++ + L F E+VH+ ++ I ++L E+F+ + KAN
Sbjct: 79 QNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKANKIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
S+ V E FY+GF L NK+ +AE
Sbjct: 139 DIYHNGSALQKKI---------------ASVFLETFLFYSGFFTPLYYLGNNKLTNVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ Q +L++ E Y ++ K
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPAAEQQQLQDWMYDLLYDLYENEEKYTNDLYAKT 243
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
++++ AN+ +G E F T NP M+ + +FF
Sbjct: 244 KW---TDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MNGISTSTANHDFFSQVG 299
Query: 341 TEYQQGA--ELKWD 352
Y+ G ++ D
Sbjct: 300 NGYRLGQVEAMEDD 313
>gi|15672956|ref|NP_267130.1| ribonucleotide-diphosphate reductase subunit beta [Lactococcus
lactis subsp. lactis Il1403]
gi|12723917|gb|AAK05072.1|AE006332_1 ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis
subsp. lactis Il1403]
gi|326406518|gb|ADZ63589.1| ribonucleoside-diphosphate reductase beta chain [Lactococcus lactis
subsp. lactis CV56]
Length = 325
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 64/303 (21%), Positives = 110/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ + W+ T VP+ +DL W+ L ER + ++L + + +
Sbjct: 30 WEKLTSQFWLDTRVPVSNDLDDWRKLPQL---ERDTFAKAFAGLTLLDTLQSVDGAEVLK 86
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
P+ F E+VH+ ++ I ++L + ELFN + KA
Sbjct: 87 HDARTPQEIACFNNIQFMESVHAKSYSTIFSTLNTKKEIEELFNWVDTNVYMQTKAEIIN 146
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ ++ + V E FY+GF L NKM+ AE
Sbjct: 147 KIYESGTPLQKKV---------------ASVFLETCLFYSGFYTPLRYLGNNKMINSAEI 191
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E EF+ +L++ E Y+H K
Sbjct: 192 IKLIIRDESVHGTYIGYKFQLGFNELSEDEQGEFRDWMYELLYQLYENEEKYSHLLYDK- 250
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
VG ++++ AN+ +G +PLF NP M+ + +FF
Sbjct: 251 -VGWT-DEVLTFLRYNANKALMNLGQDPLFPDTAADVNPVV-MNGISTSSSNHDFFSQVG 307
Query: 341 TEY 343
Y
Sbjct: 308 NSY 310
>gi|322499081|emb|CBZ34153.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 269
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ N H+ K +++ ++ +A +E + + +P +G+NA QY++F+A+R
Sbjct: 152 CLLYNSHIKHKLPRERVLEIIVDAVNIEREFICDALPVRLIGMNAELMAQYIEFVADRLL 211
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+G E ++ T+ PF +M E+I L+ + NFFE +V EYQ+ +
Sbjct: 212 VSLGEEKHYRSTQ-PFDFM-EMISLQGKTNFFEKKVGEYQKAGVMS 255
>gi|258508470|ref|YP_003171221.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
rhamnosus GG]
gi|257148397|emb|CAR87370.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
rhamnosus GG]
gi|259649782|dbj|BAI41944.1| ribonucleotide reductase beta subunit [Lactobacillus rhamnosus GG]
Length = 326
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 63/314 (20%), Positives = 120/314 (38%), Gaps = 29/314 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + ++
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGMASLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+++ + L F E+VH+ ++ I ++L E+F+ + KAN
Sbjct: 79 QNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKANKIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
S+ V E FY+GF L NK+ +AE
Sbjct: 139 DIYHNGSALQKKI---------------ASVFLETFLFYSGFFTPLYYLGNNKLTNVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ Q +L++ E Y ++ K
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEAEQQQLQDWMYDLLYDLYENEEKYTNDLYAKT 243
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
++++ AN+ +G E F T NP M+ + +FF
Sbjct: 244 KW---TDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MNGISTSTANHDFFSQVG 299
Query: 341 TEYQQGA--ELKWD 352
Y+ G ++ D
Sbjct: 300 NGYRLGQVEAMEDD 313
>gi|229552273|ref|ZP_04440998.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus
LMS2-1]
gi|258539683|ref|YP_003174182.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
rhamnosus Lc 705]
gi|229314345|gb|EEN80318.1| ribonucleoside-diphosphate reductase [Lactobacillus rhamnosus
LMS2-1]
gi|257151359|emb|CAR90331.1| Ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
rhamnosus Lc 705]
Length = 326
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 63/314 (20%), Positives = 120/314 (38%), Gaps = 29/314 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + ++
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGMASLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+++ + L F E+VH+ ++ I ++L E+F+ + KAN
Sbjct: 79 QNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKANKIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
S+ V E FY+GF L NK+ +AE
Sbjct: 139 DIYHNGSALQKKI---------------ASVFLETFLFYSGFFTPLYYLGNNKLTNVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P ++ Q +L++ E Y ++ K
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEAEQQQLQDWMYDLLYDLYENEEKYTNDLYAKT 243
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
++++ AN+ +G E F T NP M+ + +FF
Sbjct: 244 KW---TDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MNGISTSTANHDFFSQVG 299
Query: 341 TEYQQGA--ELKWD 352
Y+ G ++ D
Sbjct: 300 NGYRLGQVEAMEDD 313
>gi|290992332|ref|XP_002678788.1| predicted protein [Naegleria gruberi]
gi|284092402|gb|EFC46044.1| predicted protein [Naegleria gruberi]
Length = 330
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/318 (17%), Positives = 122/318 (38%), Gaps = 32/318 (10%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACN-NHWMPTEVP--MQDDLALWKSKNGLTDDE 78
+ +L+ L P++Y WE Y + W + +++D++ + + + +
Sbjct: 15 EEILSENPHRFTLFPIQYPKLWEIYKKRLASSIWSVEQFDQIIRNDIS---KLSEICNSD 71
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
IK L F ++ N ++ + E + + + + +H + + L
Sbjct: 72 HSFIKIILAFLVANCKQKTNLW--GAFKDIQILEAKHFHGFRLAMKNIHYEMYCNLFEIL 129
Query: 139 GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEG 198
+ + + + S K+ + ++ + D F + L V E
Sbjct: 130 TEETERSELIEKMINSTMKKSQYTKKWLNS-------------DNLFSERLIGL-VCIEQ 175
Query: 199 MWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
++ F I L + M + I RDE H NF + + +K +K Q
Sbjct: 176 IFLSASFFSIFWLKKRGLMSALTISNDLIFRDEEFHSNFLYSLYSNLK------HSKLPQ 229
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTEN 318
+++ EA +E + ++P + L+ S QY++ +++ G E LF +TEN
Sbjct: 230 TLVHSLVKEAVDIEKEFIT-SLPTELIELDRNSMYQYVEVVSDNILISFGYEKLF-HTEN 287
Query: 319 PFPWMSEVIDLKKEKNFF 336
W+ +++ + FF
Sbjct: 288 QCSWIQDMLM--NKSGFF 303
>gi|81428551|ref|YP_395551.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
sakei subsp. sakei 23K]
gi|78610193|emb|CAI55242.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus
sakei subsp. sakei 23K]
Length = 318
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 65/308 (21%), Positives = 114/308 (37%), Gaps = 27/308 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+S L D+E+ ++ G ++L + + + ++
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWRS---LPDNEKWIVGHVFGGLTLLDTLQSQDGMASLK 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
++ P L F E+VH+ ++ I ++L E+F+ + KAN
Sbjct: 79 ANIRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTPNEIDEIFDWTNTNEYLQYKANKIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
Q S V E FY+GF L NK+ +AE
Sbjct: 139 SIYQNGSPLQQKI---------------ASVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E +E Q +L++ E Y HE
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELAKAEQEELQNWMYDLLYDLYANEEKYTHEVYDG- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
G Y+++ AN+ +G LF NP ++ + +FF
Sbjct: 243 -TGWT-EEVLTYLRYNANKALMNLGQGALFPDTAEDVNPVV-LNGMSTSTANHDFFSQVG 299
Query: 341 TEYQQGAE 348
Y+ G
Sbjct: 300 NGYRLGNV 307
>gi|39938541|ref|NP_950307.1| ribonucleotide-diphosphate reductase subunit beta [Onion yellows
phytoplasma OY-M]
gi|39721650|dbj|BAD04140.1| ribonucleotide reductase beta subunit [Onion yellows phytoplasma
OY-M]
Length = 350
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 63/330 (19%), Positives = 125/330 (37%), Gaps = 24/330 (7%)
Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
++ N L KY Y + W P ++ +Q DLA W + LT +E+ RNL
Sbjct: 19 ANWNVLED-KYTHF--FYEQNLSQFWRPEDISLQGDLAAW---SELTLEEKTAYSRNLLV 72
Query: 89 FASSESLVANNIVLAIYRHLSNPECR---QYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
++ + + I R L E + A E AVH+ ++ I S ++
Sbjct: 73 LTFLDTYQGDLGMPVIARSLEEHEHQKKATLNFMGAMENAVHAKSYSNIFMSYLTNKEIN 132
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTT------GTKDADQEFLQDLFVFYVVFE 197
+LF + S+ ++ + L + ++ ++ V E
Sbjct: 133 QLFLWGNQQTSLQTMMQVIVKVYEALEDQIYLKKQSSLQFSELEFKKTQWQAMAVSVFLE 192
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
FY+GF L K++ E I+RDES+H + + +I +
Sbjct: 193 TWLFYSGFYYSLYFYGQGKLMQSGEIINLIIRDESIHGVYVGRLATEIYQLFDKPTQQTL 252
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP-SCEQYMQFIANRRCHQIGLEPLFKYT 316
+ ++ + + + H K LN +++++ AN+ +G + F +
Sbjct: 253 KTWLDDLMQQLYQAQTSLVHAIYHK----LNLEDDVNKFVRYNANKALMNLGFDAFFP-S 307
Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345
EN P + ++ + + + F + YQ+
Sbjct: 308 ENVNPVIINGLNTETKTMDNFSMKGNGYQK 337
>gi|15606660|ref|NP_214040.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5]
gi|18202109|sp|O67475|RIR2_AQUAE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit;
Contains: RecName: Full=Aae nrdB intein; AltName:
Full=Aae RIR2 intein
gi|2983879|gb|AAC07431.1| ribonucleotide reductase beta chain [Aquifex aeolicus VF5]
Length = 696
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/270 (20%), Positives = 118/270 (43%), Gaps = 15/270 (5%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSA-CNNHWMPTEV 59
N I + ++++ ++ +L +KY WA++ Y N W+P E+
Sbjct: 6 KNELVRKLIFNPQGDREASKRKIIKGNPTNIFELNEIKYSWAFDLYKLMGFTNFWIPEEI 65
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
M +D +++ L+D E+ + L F + +S + ++ R ++ PE +
Sbjct: 66 QMLEDRKQYETV--LSDYEKRAYELVLSFLIALDSFQVD-MLKEFGRMITAPEVEMAITA 122
Query: 120 QAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
Q F+E+VH++++Q+I+ S+ E++N +RE + + + + +
Sbjct: 123 QEFQESVHAYSYQFILESVVDPVKADEIYNYWREDERLLER--------NKVIAELYNEF 174
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
+ ++E + + E ++FY+GFA +LGR KM +Q +YI RDE +
Sbjct: 175 IRKPNEENFIKATIGNYILESLYFYSGFAFFYTLGRQGKMRNTVQQIKYINRDELCFIEG 234
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ + ++ L + + E
Sbjct: 235 TEVLTKRGFVDFRELREDDLVAQYDIETGE 264
Score = 99.5 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
+ H+ ++IN ++ ENP L+T E ++ A EI + +G+N
Sbjct: 575 NCHVTLFRNIINTLRKENPELFTPEIEKWIVEYFKYAVNEEIKWGQYVTQNQILGINDVL 634
Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEV--IDLKKEKNFFETRVTEYQQGAE 348
E+Y++++ N R QIG +P++ TENP W+ E I+ + +FF+ + Y + E
Sbjct: 635 IERYIKYLGNLRITQIGFDPIYPEVTENPLKWIDEFRKIN-NTKTDFFQAKPQTYSKANE 693
Query: 349 LKW 351
LKW
Sbjct: 694 LKW 696
>gi|319440691|ref|ZP_07989847.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
variabile DSM 44702]
Length = 335
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 58/336 (17%), Positives = 119/336 (35%), Gaps = 40/336 (11%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W+ +N W+P ++P+ +DL W+ L+DDER + R
Sbjct: 26 NWNRIEDAKDLEVWQ---RLTSNFWLPEKMPLSNDLPDWR---ALSDDERTLTARVFTGL 79
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
+++ A ++ + AF +AVH+ ++ +F+
Sbjct: 80 TLLDTVQATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYS-----------SVFSTM 128
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
I WA+ + + D + + + ++ GF L
Sbjct: 129 CSSAEIEDAYTWAIDNRRLQPRATAVMAHYAGDDPLKRKVASTLLSSLLLY--AGFYLPL 186
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
M+ A+ + I+RD+++H + + +P E + + E
Sbjct: 187 WYSSRGVMMNTADMIRLILRDKAVHGYYSGYKYQRGLDAHPE-RVAEMEDFTYRFTAELL 245
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
LE Y+ + G L+ + ++ + A++ +G P ++ P E+
Sbjct: 246 ALENEYSRDLYSLGS--LDYAGVDAFVHYNADKALMNLGYGPQYEDAAAGVEP-----EI 298
Query: 327 I-----DLKKEKNFFETRVTEYQQG-----AELKWD 352
I D + +FF + Y G E WD
Sbjct: 299 IAALTPDSSETHDFFSGSGSSYVMGRAEVTEEDDWD 334
>gi|311992967|ref|YP_004009834.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage
Acj61]
gi|295815256|gb|ADG36182.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage
Acj61]
Length = 377
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 60/342 (17%), Positives = 124/342 (36%), Gaps = 23/342 (6%)
Query: 10 IQAGEKRVNVDDKRML-NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ + + + M + + + K+ + A + W P E+ + D + +
Sbjct: 3 VFNRDSNYDYAQQPMFFGESTSIARYESPKHPTIENLTVQALSFFWRPEEINLTTDSSQF 62
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
K L ++ NL + A +++ + + S+ ++ F E +HS
Sbjct: 63 K---KLHPRDQRTFTLNLLYQAIMDTVQGSAPSEILGPICSDIGLDTWIQTWTFFETIHS 119
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS------SPSFTTGTKDAD 182
++ +II +L + E+F+ I A+A +Y L S G +
Sbjct: 120 RSYTHIIRNLYNNPTEIFDSVVLDDQIMARAASICKYYDELEIKWTLYSADKIRGIATEE 179
Query: 183 QEFLQD-----LFVFYVVFEGMWFYTGFAQILSLGRANK-MVGIAEQYQYIMRDESLHLN 236
Q + E + F+ F + K M G ++ +I RDE+LH
Sbjct: 180 QLYELKKAFYLCLHTINALEAIRFFVSFINTFNFFETQKVMEGNSKIMTFIARDENLHHQ 239
Query: 237 FGIDVIN--QIKIENPHLWT--KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPS 291
+I Q E P +E ++++ + E + G GL+
Sbjct: 240 GTRYMIKRLQSGEEGPEWIKIAEECREEATNIFLATNEQEKEWCKYVYQSGAPQGLSVGL 299
Query: 292 CEQYMQFIANRRCHQIGLE--PLFKYTENPFPWMSEVIDLKK 331
Y+ + R +++GL+ + NPFPW+++ +
Sbjct: 300 VSDYIDYATVPRMNELGLDSSSIVAPKRNPFPWLTKFLKSNT 341
>gi|323341317|ref|ZP_08081561.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
ruminis ATCC 25644]
gi|323091194|gb|EFZ33822.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
ruminis ATCC 25644]
Length = 317
Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 64/331 (19%), Positives = 121/331 (36%), Gaps = 33/331 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N L WE W+ T +P+ +DL WK + ++E ++++ G
Sbjct: 9 NWNVLDDALDKAVWE---KLTEQFWLDTRIPLSNDLNDWK---KMKEEEHALVEKVFGGL 62
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
++L + + + A+ + L F E+VH+ ++ I ++L E+F
Sbjct: 63 TLLDTLQSVDGMSALKKDALTSHEAAVLNNIEFMESVHAKSYSSIFSTLNTPAEIEEIFE 122
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ + KA + + V E FY+GF
Sbjct: 123 WTEKNEYLQYKAEKICAIYRGDDALMKK---------------AASVFLESFLFYSGFYA 167
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L N++ +AE + I+RDES+H + ++ + + +L++
Sbjct: 168 PLYFLGHNRLNNVAEIIKLILRDESVHGTYIGYKFQIRYRALAEEEQEKLKFEIVNLLYD 227
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
E Y HE +G ++++ AN+ +G EPLF+ T NP M+
Sbjct: 228 LYQNEEKYTHELY--DELGWT-EDVGIFLRYNANKALMNLGFEPLFEETATDVNPVV-MN 283
Query: 325 EVIDLKKEKNFFETRVTEYQQGAE---LKWD 352
+ +FF Y G+ D
Sbjct: 284 GISTSTSNHDFFSQVGNGYLLGSVEAMGDDD 314
>gi|319891738|ref|YP_004148613.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
[Staphylococcus pseudintermedius HKU10-03]
gi|317161434|gb|ADV04977.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
[Staphylococcus pseudintermedius HKU10-03]
gi|323465093|gb|ADX77246.1| ribonucleoside-diphosphate reductase, beta subunit [Staphylococcus
pseudintermedius ED99]
Length = 320
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 59/308 (19%), Positives = 114/308 (37%), Gaps = 14/308 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W+ TE + D+A WKS LT+ E+ K+ L ++ A++ + I
Sbjct: 16 FWRQNIAQMWVETEFKVSKDIASWKS---LTEAEQDTFKKALAGLTGLDTHQADDGMPLI 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H + + E +H+ ++ +I T+L + + V
Sbjct: 73 MLHTQDLRKKAVYSFMGMMEQIHAKSYSHIFTTLLPSKETDELLDVWVLEEPH----LKY 128
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
++ + K+A V V E F++GF L L +M E
Sbjct: 129 KSEKIVGTYHKLWGKEASIYDQYMARVASVFLETFLFFSGFYYPLYLAGQGRMTTSGEII 188
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DES+H F ++ E ++ ++ +L + E +Y
Sbjct: 189 RKILLDESIHGVFTGLDAQSLRNELSESEKQKADKEMYQLLEDLYANEASYTRSLY--DP 246
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETRVTE 342
+GL Y+++ N+ +G EP F+ E +P + +D K +FF +
Sbjct: 247 IGLT-DDVMNYVRYNGNKALSNLGFEPYFEEREFSPI--IENALDTSTKNHDFFSVKGDG 303
Query: 343 YQQGAELK 350
Y ++
Sbjct: 304 YVLALNVE 311
>gi|42561374|ref|NP_975825.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
mycoides subsp. mycoides SC str. PG1]
gi|42492872|emb|CAE77467.1| ribonucleoside-diphosphate reductase 2 beta chain [Mycoplasma
mycoides subsp. mycoides SC str. PG1]
gi|301321363|gb|ADK70006.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
mycoides subsp. mycoides SC str. Gladysdale]
Length = 339
Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats.
Identities = 55/326 (16%), Positives = 113/326 (34%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++P+ +DL+ W+S L+ + + ++ R
Sbjct: 30 NWNVINDEKDLEVWN---RITQNFWLPEKIPVSNDLSSWRS---LSSEWQQLVTRTFTGL 83
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A H + AF VH+ ++ I ++L E E
Sbjct: 84 TLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 143
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ ++ +A + Y V + G Y GF
Sbjct: 144 WVVKTETLQKRAKALIPYYTGTD---------------PLKSKVAAALMPGFLLYGGFYL 188
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L K+ ++ + I+RD+ +H + + + P E ++ +L+E
Sbjct: 189 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLPVEKQTEMKEFVFKLLYE 248
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + ++ + A + +G + F E P +
Sbjct: 249 LIDLETAYLKELYAGFDI---VDDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 305
Query: 327 ID--LKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 306 LSARADENHDFFSGNGSSYVMGVSVE 331
>gi|32491358|ref|NP_871612.1| ribonucleotide-diphosphate reductase subunit beta [Wigglesworthia
glossinidia endosymbiont of Glossina brevipalpis]
gi|25166565|dbj|BAC24755.1| nrdF [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 324
Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats.
Identities = 55/324 (16%), Positives = 115/324 (35%), Gaps = 27/324 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W + N W+P ++P+ +D+ WK L+ +E+ + R
Sbjct: 15 NWNRIEDEKDLEVWNHVTT---NFWLPEKIPLSNDIQSWK---MLSKEEKKLTIRIFTGL 68
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
++L +I + + F EAVH+ ++ I ++L
Sbjct: 69 TLLDTLQNIIGAPSIMMDAKTMHEKAVISNIGFMEAVHARSYSSIFSTLCSTT-----EV 123
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+ K + +S + + V E FY+GF +
Sbjct: 124 DSAYFWSEKNKFLQNKVNIISKIYLEKNSLKKK--------IASVFLESFLFYSGFYLPM 175
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
K+ ++ + I+RDE++H + + I K + + +L++
Sbjct: 176 FYSSRGKLTNTSDLIRLIIRDEAVHGYYIGYKFQKDLISLNEKEKKNIKDFAFNLLYKLY 235
Query: 270 LLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEV 326
EI Y++ + ++ + AN+ +G E F E NP +S +
Sbjct: 236 ENEINYSYSLYKDIIP---IKNIISFLNYNANKSLMNLGYEQYFPDDESLVNP-DILSAL 291
Query: 327 I-DLKKEKNFFETRVTEYQQGAEL 349
+ + +FF + Y G +
Sbjct: 292 TPNSNENHDFFSGSGSSYVMGKTV 315
>gi|331703804|ref|YP_004400491.1| ribonucleoside diphosphate reductase 2 betachain [Mycoplasma
mycoides subsp. capri LC str. 95010]
gi|256383837|gb|ACU78407.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
mycoides subsp. capri str. GM12]
gi|256384668|gb|ACU79237.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
mycoides subsp. capri str. GM12]
gi|296455270|gb|ADH21505.1| ribonucleoside-diphosphate reductase, beta subunit [synthetic
Mycoplasma mycoides JCVI-syn1.0]
gi|328802359|emb|CBW54513.1| Ribonucleoside diphosphate reductase 2 betachain [Mycoplasma
mycoides subsp. capri LC str. 95010]
Length = 339
Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats.
Identities = 55/326 (16%), Positives = 113/326 (34%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++P+ +DL+ W+S L+ + + ++ R
Sbjct: 30 NWNVINDEKDLEVWN---RITQNFWLPEKIPVSNDLSSWRS---LSSEWQQLVTRTFTGL 83
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A H + AF VH+ ++ I ++L E E
Sbjct: 84 TLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 143
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ ++ +A + Y V + G Y GF
Sbjct: 144 WVVKTETLQKRAKALIPYYTGTD---------------PLKSKVAAALMPGFLLYGGFYL 188
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L K+ ++ + I+RD+ +H + + + P E ++ +L+E
Sbjct: 189 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLPVEKQAEMKEFVFKLLYE 248
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + ++ + A + +G + F E P +
Sbjct: 249 LIDLETAYLKELYAGFDI---VDDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 305
Query: 327 ID--LKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 306 LSARADENHDFFSGNGSSYVMGVSVE 331
>gi|269941513|emb|CBI49911.1| ribonucleoside-diphosphate reductase subunit [Staphylococcus aureus
subsp. aureus TW20]
Length = 340
Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats.
Identities = 54/304 (17%), Positives = 110/304 (36%), Gaps = 14/304 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E DL++WK+ L+ DE+ + L ++ + +
Sbjct: 22 YWKQNVKQMWTEEEFKPSKDLSVWKT---LSADEQETYVKALSGLTGLDTTQGTEGMPLL 78
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
H R + E +H ++ +I TSL + + + VP+ + +
Sbjct: 79 AFHYPEEIWRGVFAFMSMMENIHHKSYSHIFTSLLERKDTHYYLKEWVPANK----YLNK 134
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
T+ +++ + + + + E F++GF L L KMV E
Sbjct: 135 KTKLITTNYYKLLKPNPTDREIYVAMASSIFLESFLFFSGFYYPLYLAGQGKMVHSGEII 194
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I+ DE++H + I + ++ +++ + + E+ YA K
Sbjct: 195 RKIILDETIHGSGTGYAAQVIFEKFSKEEQEDIRKELMELFDQLYFNEVEYAASLYDK-- 252
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETRVTE 342
+GL +Y+Q+ NR +G E +F NP + + +FF +
Sbjct: 253 LGLT-EDVIRYIQYNGNRALMNLGWETVFNPEPFNPI--VENGLRTDTTNHDFFSVKGDG 309
Query: 343 YQQG 346
Y
Sbjct: 310 YTLA 313
>gi|32709433|gb|AAP86735.1| NrdB [Enterobacteria phage U5]
Length = 391
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 67/363 (18%), Positives = 132/363 (36%), Gaps = 44/363 (12%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + K+V+V + M + ++ E + + W P EV +
Sbjct: 1 MSTVFN-TKQVDVLTEPMFFGSGLGIARYDIQ--RHRVFEELIEKSLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A +Y + + +
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLVKTREWENAKENY 174
Query: 184 EFL---------------------------QDLFVFYVVFEGMWFYTGFAQILSLGRAN- 215
E E + FY FA + +
Sbjct: 175 ESSIGSCQQNDIEMYEEIMFNAKRDLMKSLYLCLHVINALEAIRFYVSFACTFNFHKNME 234
Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLL 271
M G A+ ++I RDE LHL +I Q++ +E +Q++ + E
Sbjct: 235 IMEGNAKIMKFIARDEQLHLKGTQYIIRQLQSGTDGDEWVKIAQECEQEAVDIFMEVNRQ 294
Query: 272 EIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVID 328
E +A G GLN S ++ ++ R Q GL P+ ++P+PW+ E ++
Sbjct: 295 EKDWAVHLFKDGDVPGLNTNSMWSFIDYLTVSRMKQCGLPCPITDAPVKHPYPWIREYLN 354
Query: 329 LKK 331
Sbjct: 355 SDN 357
>gi|259502687|ref|ZP_05745589.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM
16041]
gi|259169332|gb|EEW53827.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus antri DSM
16041]
Length = 339
Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats.
Identities = 65/334 (19%), Positives = 120/334 (35%), Gaps = 32/334 (9%)
Query: 31 VNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+NQ + + + + W+ T +P+ +DL W+ L +D + +
Sbjct: 9 LNQYKAINWNEVSDMIDKATWEKLTEQFWLDTRIPVSNDLDDWR---NLDEDHQWTVGHV 65
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
G +++ + + A+ + L F E+VH+ ++ I ++L +
Sbjct: 66 FGGLTLLDTVQSEAGMTALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNSPDEID 125
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E+FN + KA + V V E FY+
Sbjct: 126 EIFNWSDTEEYLQNKATKIANMYLNPAEDPLKKK-------------VANVFLETFLFYS 172
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L N++ +AE + I+RDES+H + E ++ +
Sbjct: 173 GFYTPLYYLGHNELNNVAEIIKLILRDESVHGTYVGYKFQVGLHERTEKQQQDMKDWMYN 232
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
L+E E Y H K +G ++++ AN+ +G +PLF T NP
Sbjct: 233 FLYELYDNEEKYTHLLYDK--IGWT-DDVLTFIRYNANKALMNLGQDPLFPDTATDVNPV 289
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
M+ + +FF Y+ G +K D
Sbjct: 290 V-MNGISTSTSNHDFFSQVGNGYRLGEVEAMKDD 322
>gi|57867410|ref|YP_189075.1| ribonucleotide-diphosphate reductase subunit beta [Staphylococcus
epidermidis RP62A]
gi|57638068|gb|AAW54856.1| ribonucleoside-diphosphate reductase 2, beta subunit
[Staphylococcus epidermidis RP62A]
Length = 340
Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats.
Identities = 55/307 (17%), Positives = 111/307 (36%), Gaps = 14/307 (4%)
Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
A + W E DL++WK+ L+ DE+ + L ++ +
Sbjct: 19 ALTYWKQNVKQMWTEEEFKPSKDLSVWKT---LSADEQETYVKALSGLTGLDTTQGTEGM 75
Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
+ H R + E +H ++ +I TSL + + + VP+ +
Sbjct: 76 PLLAFHYPEEIWRGVFAFMSMMENIHHKSYSHIFTSLLERKDTHYYLKEWVPANK----Y 131
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ T+ +++ + + + + E F++GF L L KMV
Sbjct: 132 LNKKTKLITTNYYKLLKPNPTDREIYVAMASSIFLESFLFFSGFYYPLYLAGQGKMVHSG 191
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E + I+ DE++H + I + ++ +++ + + E+ YA
Sbjct: 192 EIIRKIILDETIHGSGTGYAAQVIFDKFSKEEQEDIRKELMELFDQLYFNEVEYAASLYD 251
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK-KEKNFFETR 339
K +GL +Y+Q+ NR +G E +F NP + + +FF +
Sbjct: 252 K--LGLT-EDVIRYIQYNGNRALMNLGWETVFNPEPFNPI--VENGLRTDTTNHDFFSVK 306
Query: 340 VTEYQQG 346
Y
Sbjct: 307 GDGYTLA 313
>gi|85057306|ref|YP_456222.1| ribonucleotide-diphosphate reductase subunit beta [Aster yellows
witches'-broom phytoplasma AYWB]
gi|84789411|gb|ABC65143.1| ribonucleoside-diphosphate reductase beta chain [Aster yellows
witches'-broom phytoplasma AYWB]
Length = 350
Score = 119 bits (297), Expect = 9e-25, Method: Composition-based stats.
Identities = 61/330 (18%), Positives = 123/330 (37%), Gaps = 24/330 (7%)
Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
++ N L KY Y + W P ++ +Q DLA W + LT +E+ RNL
Sbjct: 19 ANWNVLED-KYTHF--FYEQNLSQFWRPEDISLQGDLAAW---SELTIEEKTAYSRNLLV 72
Query: 89 FASSESLVANNIVLAIYRHLSNPECR---QYLLRQAFEEAVHSHTFQYIITSLGLDE--G 143
++ + + I R L E + A E AVH+ ++ I S ++
Sbjct: 73 LTFLDTYQGDLGMPIIARSLEEHEHQKKATLNFMGAMENAVHAKSYSNIFMSYLTNKEIN 132
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD------ADQEFLQDLFVFYVVFE 197
+LF + S+ ++ + L + ++ V E
Sbjct: 133 QLFLWGNQQKSLQTMMQVIVKVYEALEDQIYLKKQTSLQFIELEFKKTQWKAMAVSVFLE 192
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
FY+GF L K++ E I+RDES+H + + ++ +
Sbjct: 193 TWLFYSGFYYPLYFYGQGKLMQSGEIINLIIRDESIHGVYVGRLATELYQLFDKPTKQTL 252
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP-SCEQYMQFIANRRCHQIGLEPLFKYT 316
+ ++ + + + + K LN +++++ AN+ +G + F +
Sbjct: 253 KTWLDDLMQQLYQTKTSLVNAIYHK----LNLEDDVNKFVRYNANKALMNLGFDAFFP-S 307
Query: 317 ENPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345
EN P + ++ + + + F + YQ+
Sbjct: 308 ENVNPVIINGLNTETKTMDNFSMKGNGYQK 337
>gi|10957415|ref|NP_051641.1| ribonucleotide-diphosphate reductase subunit beta [Deinococcus
radiodurans R1]
gi|6460844|gb|AAF12548.1|AE001826_17 ribonucleoside-diphosphate reductase, beta chain [Deinococcus
radiodurans R1]
Length = 354
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 58/308 (18%), Positives = 107/308 (34%), Gaps = 22/308 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y + W P E+P+ +D WK+ L+D+ER + ++L + +
Sbjct: 43 FYAKYTSQLWFPEEIPLTNDALAWKT---LSDEERWTYIHASAGLNALDTLQGEVGMPRL 99
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEGELFNMYREVPSITAKANWA 162
+ + L Q E +H+ ++ + + +E E+F R P + K
Sbjct: 100 RDLVDGHIRKATLQFQGMMEDIHARSYSLMNKTFLTASEEREVFEWVRTQPQLQHKIAVI 159
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+ K V + E FY+GF L L +MV E
Sbjct: 160 QGVYRDPDVSDLGVWKK----------LVVSCMLETALFYSGFFYPLYLAGQGQMVSAGE 209
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
+ I+ DE+LH + + + + Q L E+AY +
Sbjct: 210 IFNLIILDEALHGVYVALLAQEKFATMNAAEQADAQAWFDDTLQALYSNELAYTEQLYAN 269
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEK-NFFETRV 340
VGL +++++F N + L F + NP + I + +FF +
Sbjct: 270 --VGLTGE-VKKFIRFNFNVLADNLALPRPFGDEDINPI--VQNGIQARGTTHDFFSAKG 324
Query: 341 TEYQQGAE 348
+ Y +
Sbjct: 325 SSYSKMTV 332
>gi|322500276|emb|CBZ35354.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 196
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 3/140 (2%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
+ N +++ + L P++Y W KY + W E+ + +D+ W +
Sbjct: 60 AEGTNAEEEPLQQENPFRYVLFPIQYHDIWRKYKEQESCIWTVEEIDLGNDMKDWAT--- 116
Query: 74 LTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
L D ER IK L FFA S+ +V N+ + PE R + Q E +HS T+
Sbjct: 117 LNDGERHFIKHVLAFFAGSDGIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSV 176
Query: 134 IITSLGLDEGELFNMYREVP 153
++ + D E + +
Sbjct: 177 LLDTYITDSEEKLRLLHAIQ 196
>gi|312869696|ref|ZP_07729843.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
oris PB013-T2-3]
gi|311094745|gb|EFQ53042.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
oris PB013-T2-3]
Length = 339
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 63/334 (18%), Positives = 119/334 (35%), Gaps = 32/334 (9%)
Query: 31 VNQLLPLKYGWAWEK-----YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+NQ + + + + W+ T +P+ +D+ W+ L +D + +
Sbjct: 9 LNQYKAINWNEISDMIDKATWEKLTEQFWLDTRIPVSNDMDDWR---NLDEDHQWTVGHV 65
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
G +++ + + A+ + L F E+VH+ ++ I ++L +
Sbjct: 66 FGGLTLLDTVQSEAGLTALKEDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQID 125
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E+FN + KA + V V E FY+
Sbjct: 126 EIFNWSDTEEYLQNKATKIANMYLNPAEDPLKKK-------------VANVFLETFLFYS 172
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L N++ +AE + I+RDES+H + E ++ +
Sbjct: 173 GFYTPLYYLGHNELNNVAEIIKLILRDESVHGTYIGYKFQVGLHERTEKQQQDMKDWLYN 232
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPF 320
L+E E Y H K +G ++++ AN+ +G +PLF NP
Sbjct: 233 FLYELYDNEEKYTHLLYDK--IGWT-DDVLTFIRYNANKALMNLGQDPLFPDTAADVNPV 289
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG--AELKWD 352
M+ + +FF Y+ G +K D
Sbjct: 290 V-MNGISTSTSNHDFFSQVGNGYRLGEVEAMKDD 322
>gi|227529511|ref|ZP_03959560.1| ribonucleoside-diphosphate reductase [Lactobacillus vaginalis ATCC
49540]
gi|227350596|gb|EEJ40887.1| ribonucleoside-diphosphate reductase [Lactobacillus vaginalis ATCC
49540]
Length = 339
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 63/314 (20%), Positives = 114/314 (36%), Gaps = 27/314 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L D + + G +++ + + A+
Sbjct: 29 WEKLTEQFWLDTRIPVSNDLDDWRE---LDTDHQWTVGHVFGGLTLLDTVQSEAGLTALK 85
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + L F E+VH+ ++ I ++L E E+F+ + KA
Sbjct: 86 QDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPEEINEIFDWSDSEEYLQNKAVQIA 145
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ V V E FY+GF L NK+ +AE
Sbjct: 146 NIYRNPEEDPLKKK-------------VANVFLETFLFYSGFYTPLYYLGHNKLNNVAEI 192
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + ++ + L+E E Y H +
Sbjct: 193 IKLILRDESVHGTYIGYKFQVGMHDRTEKQQQDMKDWMYNFLYELYDNEEKYTHLLYDQ- 251
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
VG ++++ AN+ +G +PLF T NP M+ + +FF
Sbjct: 252 -VGWT-EDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MNGISTSTANHDFFSQVG 308
Query: 341 TEYQQGA--ELKWD 352
Y+ GA + D
Sbjct: 309 NGYRLGAVEAMNDD 322
>gi|50365347|ref|YP_053772.1| ribonucleotide-diphosphate reductase subunit beta [Mesoplasma
florum L1]
gi|50363903|gb|AAT75888.1| ribonucleoside-diphosphate reductase beta chain [Mesoplasma florum
L1]
Length = 340
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 60/330 (18%), Positives = 114/330 (34%), Gaps = 31/330 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++P+ +DL W++ LT + + +I R
Sbjct: 31 NWNVVNDEKDLEVWN---RITQNFWLPEKIPVSNDLTSWRT---LTPEWQELITRTFTGL 84
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A + + AF AVH+ ++ I ++L E E
Sbjct: 85 TLLDTIQATVGDVAQVPNSLTDHEQVIYTNFAFMVAVHARSYGSIFSTLCSSEQIEEAHE 144
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
++ +A + Y V + G Y GF
Sbjct: 145 WVINTETLQERAKALIPYYVNDD---------------PLKSKVAAALMPGFLLYGGFYL 189
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L K+ ++ + I+RD+ +H + + + E ++ +L+E
Sbjct: 190 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEKQAEMKEFVFKLLYE 249
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E GL A ++ + A + +G + F E P +
Sbjct: 250 LIDLEKAYLKELYED--FGL-ADDAIRFSVYNAGKFLQNLGYDSPFTEEETRIEPEIFTQ 306
Query: 327 ID--LKKEKNFFETRVTEYQQGA--ELKWD 352
+ + +FF + Y G E + D
Sbjct: 307 LSARADENHDFFSGNGSSYIMGVSEETEDD 336
>gi|326333061|ref|ZP_08199312.1| ribonucleoside-diphosphate reductase, beta subunit [Nocardioidaceae
bacterium Broad-1]
gi|325949135|gb|EGD41224.1| ribonucleoside-diphosphate reductase, beta subunit [Nocardioidaceae
bacterium Broad-1]
Length = 334
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/323 (16%), Positives = 104/323 (32%), Gaps = 31/323 (9%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG-FFASSESL 95
Y A + + W E+P+++D + +TD E+ +K L F L
Sbjct: 20 FDYPMAEDLAKKQRSIFWTAEEIPVENDKQDF--LVNMTDAEQAAVKTTLKLFTIYELIL 77
Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAF-EEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
++ PE + +F E +H+ + + +L +D E ++ Y+ P
Sbjct: 78 GGEVWGDRLFHAFPRPEIQMMTNAFSFAELNMHAPFYAKLNKTLMIDTEEFYDSYKNDPV 137
Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
+ + + L + + E Y+ FA +
Sbjct: 138 LAERIAFVWDAIADDD---------------LLYALSVFTLMENCVLYSNFAFLKHFQSG 182
Query: 215 NK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL--------WTKEFQQKSRTM 264
K + + + RDE+LH G + N E + + R +
Sbjct: 183 GKNLLQNVISGINFSARDENLHATGGAWLFNTTLDEYAATVPADKFEAERDDLFARVRGV 242
Query: 265 LHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PW 322
E G G+ E +++ + + +EPLF NP W
Sbjct: 243 AEHLYAHEARIVEMLFAHGPITGIEQADLEAFVRSRIDMTLENMRMEPLFGVEPNPVAEW 302
Query: 323 MSEVIDLKKEKNFFETRVTEYQQ 345
I+ + +FF+ EY +
Sbjct: 303 FYAGINGTQFHDFFQVTGNEYNR 325
>gi|310722361|ref|YP_003969185.1| hypothetical protein phiAS4_ORF0167 [Aeromonas phage phiAS4]
gi|306021204|gb|ADM79739.1| hypothetical protein phiAS4_ORF0167 [Aeromonas phage phiAS4]
Length = 332
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 55/319 (17%), Positives = 103/319 (32%), Gaps = 28/319 (8%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG-FFASSESL 95
+KY + + W E + +D ++ LT E I L F +
Sbjct: 19 IKYPEFAKLADEQMHAFWPWDEPVVDNDAQDLRT--KLTPGELNGITTVLKLFTIYERKV 76
Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
+ I R PE + A E H+ + + L LD+ + ++E
Sbjct: 77 GEDYWSARIARTFGRPEINRMATLFAAVEGNSHAPFYNKVNEVLYLDDEAFYTSWKESEE 136
Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL--- 211
++ + + + ++S P F + EG Y+ FA +
Sbjct: 137 LSRRIQFVGK---SVSDPDDA------------KSFAAFTFIEGAVLYSSFAFLKHFQAQ 181
Query: 212 -GRANKMVGIAEQYQYIMRDESLH----LNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
+ M I + DE H + ++K + + + M +
Sbjct: 182 ECGKDLMRNICRGVDLSVADEHHHSIGGAMLFQTLCREMKEKYGEDVRAKLKNDIINMAY 241
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSE 325
+ E + G+ A +++ N +G EP+F+ NP W
Sbjct: 242 QVFDHESGIIDLVFAEPIDGITADELRVFVKSRINLCLENLGYEPIFEIENNPIADWFYR 301
Query: 326 VIDLKKEKNFFETRVTEYQ 344
I+ KK +FF +EY
Sbjct: 302 TINAKKFHDFFTGSGSEYN 320
>gi|256848140|ref|ZP_05553584.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
coleohominis 101-4-CHN]
gi|256715200|gb|EEU30177.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
coleohominis 101-4-CHN]
Length = 333
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 62/308 (20%), Positives = 111/308 (36%), Gaps = 25/308 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ L D + + G ++L + + A+
Sbjct: 23 WEKLTEQFWLDTRIPVSNDLDDWRE---LDTDHQWTVGHVFGGLTLLDTLQSQAGLTALK 79
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ L F E+VH+ ++ I ++L + E+F+ + KA
Sbjct: 80 EDVKTQHETAVLNNIQFMESVHAKSYSTIFSTLNTPDEIREIFDWSDSEEYLQNKAVKIG 139
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
S V V E FY+GF L NK+ +AE
Sbjct: 140 NIYLDESVDPLKKK-------------VANVFLETFLFYSGFYTPLYYLGHNKLNNVAEI 186
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + ++ + L+E E Y H +
Sbjct: 187 IKLILRDESVHGTYIGYKFQVGMRQLTEKQQQDMKDWMYNFLYELYDNEGNYTHLLYDQ- 245
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
+G ++++ AN+ +G +PLF T NP M+ + +FF
Sbjct: 246 -IGWT-DDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVV-MNGISTTTSNHDFFSQVG 302
Query: 341 TEYQQGAE 348
Y+ GA
Sbjct: 303 NGYRLGAV 310
>gi|116490256|ref|YP_809800.1| ribonucleotide-diphosphate reductase subunit beta [Oenococcus oeni
PSU-1]
gi|290889638|ref|ZP_06552728.1| hypothetical protein AWRIB429_0118 [Oenococcus oeni AWRIB429]
gi|116090981|gb|ABJ56135.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Oenococcus oeni PSU-1]
gi|290480836|gb|EFD89470.1| hypothetical protein AWRIB429_0118 [Oenococcus oeni AWRIB429]
Length = 337
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 108/303 (35%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +D+ W+S L E + G ++L + + + ++
Sbjct: 28 WEKLTEQFWLDTRIPISNDMKDWRS---LGPVEHKLYDHVFGGLTMLDTLQSQDGMASLL 84
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
P R L F E+VH+ ++ I +L E+F+ + + KAN
Sbjct: 85 DAAVTPHERAVLNNIKFMESVHAKSYSSIFETLDTPAEIDEIFDWASKNEQLQYKANKIN 144
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ V E FY+GF L NKM +AE
Sbjct: 145 SVYHDPD---------------PLKRKIASVFLETFLFYSGFYTPLYFVGHNKMANVAEI 189
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E K+ + +L++ E Y H+ +
Sbjct: 190 IKLIIRDESVHGTYIGYKFQLAYKELTEQEQKDLNSWAYDLLYDLYDNEEKYTHQLYDEI 249
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRV 340
++++ N+ +GLEP+F NP M+ + +FF
Sbjct: 250 DW---FDDVMIFLRYNGNKALMNLGLEPMFADGAEDVNPVV-MNGISTSTANHDFFSQVG 305
Query: 341 TEY 343
Y
Sbjct: 306 NGY 308
>gi|225869986|ref|YP_002745933.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
equi subsp. equi 4047]
gi|225699390|emb|CAW92836.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
equi subsp. equi 4047]
Length = 337
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 62/331 (18%), Positives = 113/331 (34%), Gaps = 32/331 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ NQL K W N W+P +VP+ +DL W+S L +D + +I R
Sbjct: 28 NWNQLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF A+H+ ++ I ++L + E +
Sbjct: 82 TLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHD 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ +A + Y V + G Y GF
Sbjct: 142 WVVSTESLQERARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM ++ + I+RD+ +H + Q E + +L++
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFVFDLLYQ 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G + F E P +
Sbjct: 247 LIDLEKAYLRELYDGFDL---ADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQGA---ELKWD 352
+ + +FF + Y G + D
Sbjct: 304 LSARADENHDFFSGNGSSYVMGVTEETIDDD 334
>gi|225869037|ref|YP_002744985.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
equi subsp. zooepidemicus]
gi|225702313|emb|CAX00111.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
equi subsp. zooepidemicus]
Length = 337
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 61/322 (18%), Positives = 111/322 (34%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ NQL K W N W+P +VP+ +DL W+S L +D + +I R
Sbjct: 28 NWNQLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF A+H+ ++ I ++L + E +
Sbjct: 82 TLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHD 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ +A + Y V + G Y GF
Sbjct: 142 WVVSTESLQERARVLIPYYTGND---------------PLKSKVAAAMMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM ++ + I+RD+ +H + Q E + +L++
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFVFDLLYQ 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G + F E P +
Sbjct: 247 LIDLEKAYLRELYDGFDL---ADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325
>gi|320450283|ref|YP_004202379.1| ribonucleoside-diphosphate reductase subunit beta [Thermus
scotoductus SA-01]
gi|320150452|gb|ADW21830.1| ribonucleoside-diphosphate reductase, subunit beta [Thermus
scotoductus SA-01]
Length = 323
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 52/315 (16%), Positives = 117/315 (37%), Gaps = 18/315 (5%)
Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
P +Y + +++W+ TE D+ + + R +++R+L + E L
Sbjct: 11 PYEYPRLLAYRDAIRHSYWLHTEFSYAADVQDYALAG---PEVRSLVERSLLAISQVE-L 66
Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
Y PE + + A E H++ + +++ L L++
Sbjct: 67 SVKLFWARTYEVFPKPEVAEVGMTFAESEVRHANAYAHLLDLLALED--------RFAQA 118
Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA- 214
K + + L++ + D L +F E ++ F +++L +
Sbjct: 119 LEKETALRERHRHLTAVLGSAFRGDLRGH-ALALLLFSAFTEHASLFSQFYVLMALNKRL 177
Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
+ GI+ + ++E+LH FG++++ ++ E P L+ F +++ + E A
Sbjct: 178 GRFKGISNAIEATSKEENLHGLFGVELLRILREERPDLFGPSFTEEALDRVEAFFRTEEA 237
Query: 275 YAHETMPKGF-VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSEVIDLK 330
+G + +++++ N+ GL F + W +
Sbjct: 238 LLEWIFARGDTEAVRGEEVLEFLKWRYNQVLALHGLPAPFPVRKECLRDTEWFDLELLAD 297
Query: 331 KEKNFFETRVTEYQQ 345
KE +FF R Y +
Sbjct: 298 KEVDFFNKRSVAYAR 312
>gi|195977665|ref|YP_002122909.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
equi subsp. zooepidemicus MGCS10565]
gi|195974370|gb|ACG61896.1| ribonucleotide reductase of class Ib (aerobic) beta subunit NrdF
[Streptococcus equi subsp. zooepidemicus MGCS10565]
Length = 337
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 61/322 (18%), Positives = 111/322 (34%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ NQL K W N W+P +VP+ +DL W+S L +D + +I R
Sbjct: 28 NWNQLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQRLITRTYTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF A+H+ ++ I ++L + E +
Sbjct: 82 TLLDTVQATVGDVAQIQHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSQQIEEAHD 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ +A + Y V + G Y GF
Sbjct: 142 WVVSTESLQERARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM ++ + I+RD+ +H + Q E + +L++
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAALSPEKQAEMKAFVFDLLYQ 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G + F E P +
Sbjct: 247 LIDLEKAYLRELYDGFDL---ADDAIRFSVYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325
>gi|194172964|ref|YP_002003608.1| ribonucleoside diphosphate reductase beta chain [Escherichia phage
rv5]
gi|114796002|gb|ABI79176.1| ribonucleoside diphosphate reductase beta chain [Escherichia phage
rv5]
Length = 362
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 60/326 (18%), Positives = 136/326 (41%), Gaps = 16/326 (4%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
KY +E Y W EV + ++ + + + T D ++ + L + ++S+ A
Sbjct: 33 KYPQLFELYKKQKEQDWAEDEVDLSQSISDFVTCSKSTYD---VMVQTLMWQWEADSVAA 89
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+I+ ++N E L++Q+ E +H+ T+ I+ + E+ +E ++ +
Sbjct: 90 RSIICLFSPFITNSELFTLLMKQSEIEVLHALTYSEIVRQCLPNAREIIEEIQENQNVLS 149
Query: 158 KANWALQYTQTLS--SPSFTTGTKDADQEFLQDLF----VFYVVFEGMWFYTGFAQILSL 211
++ ++Y Q L + ++ ++ + E + F FA ++
Sbjct: 150 RSGVIVKYMQELEVIGAKYRLDPSSVKEDIVRKCILRALFALLALESIEFIASFACTFAV 209
Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW-TKEFQQKSRTMLHEATL 270
V +A+ Q IM DE LH +I+ + + E + + + +L E
Sbjct: 210 AEQGIFVQVAQLVQKIMLDEMLHSKGDFAIIDILLNDPAWEKSFLEIKGELKEILDEVRT 269
Query: 271 LEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVI 327
E ++ +G +GLN+P ++++ + + G++ F T++P P+M +
Sbjct: 270 KEYGWSDYIFSEGRAIIGLNSPLLKEWVDYNCSPIYDYYGIDKDFVPPTKDPLPFMQVWM 329
Query: 328 --DLKKEKNFFETRVTEYQQGAELKW 351
L++ N E T+Y+ +
Sbjct: 330 KPSLQQTAN-QEMSNTDYRVNTTVND 354
>gi|66391280|ref|YP_238601.1| ORF025 [Staphylococcus phage Twort]
gi|62637210|gb|AAX92321.1| ORF025 [Staphylococcus phage Twort]
Length = 349
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 65/316 (20%), Positives = 119/316 (37%), Gaps = 22/316 (6%)
Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
A + A + W+P + + D++ W N LTD E+ K+ L ++ + +
Sbjct: 30 ANNFWELATTSFWLPEDFDISRDVSSW---NKLTDIEKDTYKKVLAGLTGLDTKQSVEGM 86
Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAK 158
I H Q F E++H+ ++ +I T+L L++ + + P + K
Sbjct: 87 SLIAHHEPRTRFAQVYTAFDFYESIHAKSYSHIFTTLLLNKETNYLLNEWVEQEPHLKKK 146
Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
A + + + L P+ +T + V E FY+GF L L MV
Sbjct: 147 AQYIGYFYEKLEQPNPSTFDR-------YMAKVASAFLESALFYSGFYYPLLLSGQGVMV 199
Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
I +DE+ H E + +L E++Y+H
Sbjct: 200 QSGTTIYKITQDEAYHGVGVGYTAQLDYQELTEEEQSKADALMYELLEVLYENEVSYSHM 259
Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK--EKNF 335
K +GL +Y+Q+ NR +G + F NP ++ ++ K +F
Sbjct: 260 LYDK--LGLT-EDVIRYVQYNFNRALANLGFDDYFNPEPFNPI--VNNQTNVDKLSNADF 314
Query: 336 FETRVTEYQQGAELKW 351
F T+ +Y++ K
Sbjct: 315 FSTKN-DYKRSMNTKD 329
>gi|227891214|ref|ZP_04009019.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
salivarius ATCC 11741]
gi|227867088|gb|EEJ74509.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
salivarius ATCC 11741]
Length = 326
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 61/304 (20%), Positives = 117/304 (38%), Gaps = 28/304 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL+ W+ +D++ ++ + G ++L + + + ++
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLSDWREF---NEDDKDIVGKVFGGLTLLDTLQSQDGMSSLK 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ + + F E+VH+ ++ I ++L + E+F+ + KAN
Sbjct: 79 KDVRTQHEEAVMNNIEFMESVHAKSYSSIFSTLNTPKEIEEIFDWTNSNEILQYKANRIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ Q S V E FY+GF L NK+ +AE
Sbjct: 139 EIYQNGSPLQKKV---------------ASVFLETFLFYSGFYTPLYWLGHNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E +EF +L+E E Y H K
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGFNELSDDEQEEFTSWMYDLLYELYENEEKYTHLLYDK- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPL----FKYTENPFPWMSEVIDLKKEKNFFETR 339
VG ++++ AN+ +G++PL + NP M+ + +FF
Sbjct: 243 -VGWT-DDVLVFLRYNANKALMNLGMDPLFADGYAQNVNPVV-MNGISTSTSNHDFFSQV 299
Query: 340 VTEY 343
Y
Sbjct: 300 GNGY 303
>gi|170017903|ref|YP_001728822.1| ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20]
gi|169804760|gb|ACA83378.1| Ribonucleotide reductase, beta subunit [Leuconostoc citreum KM20]
Length = 324
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 64/303 (21%), Positives = 114/303 (37%), Gaps = 26/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ ++D ER + G + ++L + + + ++
Sbjct: 26 WEKLTQQFWLDTRIPISNDLRTWR--GNMSDQERQTLNLVFGGLTTLDTLQSQDGMASLK 83
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWAL 163
+ N + L F E+VH+ ++ I +L +F+ + KAN
Sbjct: 84 LDVVNQKEEAVLNNIQFMESVHAKSYSSIFETLNEKSEIEAIFDWADSNEFLQYKANRIN 143
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
QT + V E FY+GF L NKM+ +AE
Sbjct: 144 DIYQTGTPLEKKI---------------ASVFLETFLFYSGFYTPLYFLGHNKMLNVAEI 188
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + P + Q +L+E E Y HE
Sbjct: 189 IKLIIRDESVHGTYIGYKFQIGFNKLPESESTALQSWMYDLLYELYENEEKYTHELYDD- 247
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
+G ++++ AN+ +G EP+F NP M+ + +FF
Sbjct: 248 -LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGISTSTANHDFFSGVG 304
Query: 341 TEY 343
Y
Sbjct: 305 NGY 307
>gi|57014145|gb|AAT68710.2| ribonucleoside reductase beta subunit [Borrelia hermsii]
Length = 321
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 64/330 (19%), Positives = 125/330 (37%), Gaps = 26/330 (7%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+ N+L Y + W+ E+P+ DD +W + L +ER + ++
Sbjct: 5 REAINWNRLNN-SYTKM--FWDQNIRQFWVDEEIPISDDKLVWNT---LDGEERDVYEKV 58
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEG 143
LG ++ + + I + N + + L E +H+ ++ I +SL
Sbjct: 59 LGGLTLLDTEQGSVGMPRIALAIDNLDYKPVLGFMGAMEHMHAKSYSSIFSSLSNIDRID 118
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
+F + + K + L ++ D+ L V E FY+
Sbjct: 119 HIFGWVKTYRNFQDKLDLILGKYNSI-----------HDRMSLYKALCTSVFLETFLFYS 167
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L L KMV E I+RDES+H F + + + Q+++
Sbjct: 168 GFFYPLYLAGQGKMVNSGEIINLILRDESVHGVFVGLLAQEEFNKMTFKEQAFAQREATL 227
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPF 320
+L LE AY + +GL + ++++ A++ +G + F NP
Sbjct: 228 ILERLYYLESAYTKDLY--SSIGLEGA-VDVFVRYNADKALMNLGFDSAFNIRDIDVNPL 284
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
++ + K +FF T+ Y + +++
Sbjct: 285 V-LNGLRTNTKTHDFFSTKGNGYIKPMKVE 313
>gi|90962208|ref|YP_536124.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
salivarius UCC118]
gi|301300452|ref|ZP_07206652.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|90821402|gb|ABE00041.1| Ribonucleoside-diphosphate reductase beta chain [Lactobacillus
salivarius UCC118]
gi|300214875|gb|ADJ79291.1| Ribonucleoside-diphosphate reductase beta chain [Lactobacillus
salivarius CECT 5713]
gi|300851949|gb|EFK79633.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 326
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 61/304 (20%), Positives = 117/304 (38%), Gaps = 28/304 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL+ W+ +D++ ++ + G ++L + + + ++
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLSDWREF---NEDDKDVVGKVFGGLTLLDTLQSQDGMSSLK 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+ + + F E+VH+ ++ I ++L + E+F+ + KAN
Sbjct: 79 KDVRTQHEEAVMNNIEFMESVHAKSYSSIFSTLNTPKEIEEIFDWTNSNEILQYKANRIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ Q S V E FY+GF L NK+ +AE
Sbjct: 139 EIYQNGSPLQKKV---------------ASVFLETFLFYSGFYTPLYWLGHNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E +EF +L+E E Y H K
Sbjct: 184 IKLILRDESVHGTYIGYKFQLGFNELSDDEQEEFTSWMYDLLYELYENEEKYTHLLYDK- 242
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPL----FKYTENPFPWMSEVIDLKKEKNFFETR 339
VG ++++ AN+ +G++PL + NP M+ + +FF
Sbjct: 243 -VGWT-DDVLVFLRYNANKALMNLGMDPLFADGYAQNVNPVV-MNGISTSTSNHDFFSQV 299
Query: 340 VTEY 343
Y
Sbjct: 300 GNGY 303
>gi|260578497|ref|ZP_05846410.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
[Corynebacterium jeikeium ATCC 43734]
gi|258603378|gb|EEW16642.1| ribonucleoside-diphosphate reductase R2-2, beta subunit
[Corynebacterium jeikeium ATCC 43734]
Length = 338
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 56/338 (16%), Positives = 122/338 (36%), Gaps = 42/338 (12%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ +N W+P +VP+ +DL W N LTD ER + +
Sbjct: 25 NWNRLDDQKDLEIWQ---RLTSNFWLPEKVPLSNDLPTW---NALTDAERELTTKVFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A ++ + AF +AVH+ ++ + +++ E +
Sbjct: 79 TLLDTVQATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSEEINAAYT 138
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
P++ +A +Q+ V + + Y GF
Sbjct: 139 WAIGNPALQRRATAVMQHYYGDD---------------PLKRKVAATLLSSLLLYAGFYL 183
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L ++ A+ + I+RD+++H + + +P + E ++ + ++ E
Sbjct: 184 PLWFSCRGTLMNTADMIRLILRDKAVHGYYSGYKFQRGLEAHPE-RSAELEEFTFALVEE 242
Query: 268 ATLLEIAYAHETMPKGFVGLNA--PSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPW 322
LE Y+ + + ++ + A++ +G P ++ P
Sbjct: 243 LLELEKEYSGDLYGGTLPDEKSLIDGVMAFVHYNADKALMNLGYPPQYEEEAAKTEP--- 299
Query: 323 MSEVI-----DLKKEKNFFETRVTEYQQG---AELKWD 352
E+I D + +FF + Y G + + D
Sbjct: 300 --EIIAALAPDSNETHDFFSGSGSSYVIGRAESTEEDD 335
>gi|83319806|ref|YP_424093.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
capricolum subsp. capricolum ATCC 27343]
gi|83283692|gb|ABC01624.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
capricolum subsp. capricolum ATCC 27343]
Length = 339
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 59/352 (16%), Positives = 121/352 (34%), Gaps = 34/352 (9%)
Query: 4 NTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+SPI+ + + + + + N + K W N W+P ++P+ +
Sbjct: 9 QESVSPIEFVKNDFKGNLRSV-----NWNVINDEKDLEVWN---RITQNFWLPEKIPVSN 60
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
DL W+S L+ + + ++ R +++ A +A H + AF
Sbjct: 61 DLPSWRS---LSAEWQQLVTRTFTGLTLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFM 117
Query: 124 EAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDA 181
VH+ ++ I ++L E E + S+ +A + Y
Sbjct: 118 VGVHARSYGTIFSTLCSSEQIEEAHEWVVKTESLQKRAKALIPYYAGTD----------- 166
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDV 241
V + G Y GF L K+ ++ + I+RD+ +H +
Sbjct: 167 ----PLKSKVAAALMPGFLLYGGFYLPFYLSSRAKLPNTSDIVRLILRDKVIHNYYSGYK 222
Query: 242 INQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
+ + E ++ +L+E LE AY E + A ++ + A
Sbjct: 223 YQKKVAKLSVEKQAEMKEFVFKLLYELIDLETAYLKELYAGFDI---ADDAIRFSVYNAG 279
Query: 302 RRCHQIGLEPLFKYTENPF-PWMSEVID--LKKEKNFFETRVTEYQQGAELK 350
+ +G + F E P + + + +FF + Y G ++
Sbjct: 280 KFLQNLGYDSPFSEEETRIEPEIFNQLSARADENHDFFSGNGSSYVMGVSVE 331
>gi|118586508|ref|ZP_01543952.1| ribonucleoside-diphosphate reductase 2, beta subunit [Oenococcus
oeni ATCC BAA-1163]
gi|118433072|gb|EAV39794.1| ribonucleoside-diphosphate reductase 2, beta subunit [Oenococcus
oeni ATCC BAA-1163]
Length = 337
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 61/303 (20%), Positives = 108/303 (35%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +D+ W+S L E + G ++L + + + ++
Sbjct: 28 WEKLTEQFWLDTRIPISNDMKDWRS---LGLVEHKLYDHVFGGLTMLDTLQSQDGMASLL 84
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
P R L F E+VH+ ++ I +L E+F+ + + KAN
Sbjct: 85 DAAVTPHERAVLNNIKFMESVHAKSYSSIFETLDTPAEIDEIFDWASKNEQLQYKANKIN 144
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ V E FY+GF L NKM +AE
Sbjct: 145 SVYHDPD---------------PLKRKIASVFLETFLFYSGFYTPLYFVGHNKMANVAEI 189
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E KE + +L++ E Y H+ +
Sbjct: 190 IKLIIRDESVHGTYIGYKFQLAYKELTEQEQKELNSWAYDLLYDLYDNEEKYTHQLYDEI 249
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRV 340
++++ N+ +GLEP+F NP M+ + +FF
Sbjct: 250 DW---FDDVMIFLRYNGNKALMNLGLEPMFADGAEDVNPVV-MNGISTSTANHDFFSQVG 305
Query: 341 TEY 343
Y
Sbjct: 306 NGY 308
>gi|296082342|emb|CBI21347.3| unnamed protein product [Vitis vinifera]
Length = 227
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P++Y WE Y A + W EV + D W+ LT DE+
Sbjct: 6 EEPLLAPNPDRFCMFPIQYPEVWEMYKKAEASFWTAEEVDLSQDQRQWE---NLTSDEKH 62
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
I L FFA+S+ +V N+ + + E R + Q E +HS
Sbjct: 63 FISHILAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEILLR 115
Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 36/191 (18%), Positives = 81/191 (42%), Gaps = 3/191 (1%)
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
+ + + + ++ D Q + E + A +
Sbjct: 23 QYPEVWEMYKKAEASFWTAEEVDLSQDQRQWENLTSDEKHFISHILAFFAASDGIVL-EN 81
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+A ++ ++ +G + + L K +++ + ++ ++ +E + +
Sbjct: 82 LAGRFMKEVQVAEARAFYGFQIAIENIHSEILLRNKLSEERVKAIVADSVDIEREFVCDA 141
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+P VG+N+ QY++F+A+R +G ++ + NPF WM E+I L+ + NFFE R
Sbjct: 142 LPCALVGMNSALMSQYIEFVADRLLGALGYGKMYNVS-NPFDWM-ELISLQGKTNFFEKR 199
Query: 340 VTEYQQGAELK 350
V EYQ+ + +
Sbjct: 200 VGEYQKASVMS 210
>gi|162448128|ref|YP_001621260.1| ribonucleoside-diphosphate reductase subunit beta [Acholeplasma
laidlawii PG-8A]
gi|161986235|gb|ABX81884.1| ribonucleoside-diphosphate reductase, beta chain [Acholeplasma
laidlawii PG-8A]
Length = 369
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 55/317 (17%), Positives = 120/317 (37%), Gaps = 23/317 (7%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
Y + W P +V +Q DL +W + L ++ + +NL ++ + +
Sbjct: 36 HFYEQNLSQFWRPEDVSLQPDLNVW---SVLPENIQDAYAKNLLVLTFLDTHQGDIGMPV 92
Query: 104 IYRHLSNP--ECRQYLLRQ-AFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAK 158
+ R L + + + L A E AVH+ ++ I + ++ ELF+ + ++
Sbjct: 93 VSRSLDDHFHQRKAVLNFMGAMENAVHAKSYSNIFMTYMSNQKIDELFHWGEKHTNLQNI 152
Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEF--------LQDLFVFYVVFEGMWFYTGFAQILS 210
+ + Y + L ++ + D + V V E FY+GF L
Sbjct: 153 MSLIVGYYKELDRYNYLKQFESNDPGYSETDFNIAQFKAMVASVYLETWLFYSGFYYPLF 212
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
K++ E I+RDES+H + + ++ + ++ Q L E
Sbjct: 213 FYGQGKLMQAGEIINLILRDESIHGLYVGRLAQEVFETFSNELQEQLTQWVHDFLLELYH 272
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDL 329
+ + + + ++++ AN+ +G +P F NP + ++
Sbjct: 273 EQNELVESIYDAVEL---SHDVKIFVRYNANKALMNLGFDPYFEPEDVNPV--VLNGLNT 327
Query: 330 KKEK-NFFETRVTEYQQ 345
+ + + F + YQ+
Sbjct: 328 ETKTMDNFSMKGNGYQK 344
>gi|119360103|gb|ABL66780.1| At5g40942 [Arabidopsis thaliana]
Length = 231
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +L D + P++Y WE Y A + W EV + D W+ N LT+DER
Sbjct: 6 EEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWE--NSLTNDERH 63
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
IK L FFA+S+ +V N+ + E R + Q E +HS
Sbjct: 64 FIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEILLR 116
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 35/191 (18%), Positives = 79/191 (41%), Gaps = 2/191 (1%)
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
+ + + + ++ D + + + F + +
Sbjct: 23 QYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLTNDERHFIKHVLAFFAASDGIVLEN 82
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
++ ++ ++ +G + + L TK + + + ++ +A +E + +
Sbjct: 83 LSTRFMSDVQISEARAFYGFQIAIENIHSEILLRTKFDEDRLKAIVCDAVEIEREFVCDA 142
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
+ VG+N QY++F+A+R +G ++ T NPF WM E+I L+ + NFFE R
Sbjct: 143 LSCALVGMNRELMSQYIEFVADRLLAALGCGKVYGVT-NPFDWM-ELISLQGKTNFFEKR 200
Query: 340 VTEYQQGAELK 350
V EYQ+ + +
Sbjct: 201 VGEYQKASVMS 211
>gi|68535290|ref|YP_249995.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
jeikeium K411]
gi|68262889|emb|CAI36377.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
jeikeium K411]
Length = 338
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 57/338 (16%), Positives = 124/338 (36%), Gaps = 42/338 (12%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W+ +N W+P +VP+ +DL W N LTD ER + +
Sbjct: 25 NWNRLDDQKDLEIWQ---RLTSNFWLPEKVPLSNDLPTW---NALTDAERELTTKVFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A ++ + AF +AVH+ ++ + +++ E +
Sbjct: 79 TLLDTVQATVGEISQIPDARTEHEQAVYANIAFMQAVHARSYSSVFSTMCSSEEINAAYT 138
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
P++ +A +Q+ V + + Y GF
Sbjct: 139 WAIGNPALQRRATAVMQHYYGDD---------------PLKRKVAATLLSSLLLYAGFYL 183
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L ++ A+ + I+RD+++H + + +P + E ++ + T++ E
Sbjct: 184 PLWFSCRGTLMNTADMIRLILRDKAVHGYYSGYKFQRGLEAHPE-RSAELEEFTFTLVEE 242
Query: 268 ATLLEIAYAHETMPKGFVGLNA--PSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPW 322
LE Y+ + + + ++ + A++ +G P ++ P
Sbjct: 243 LLELEKEYSGDLYGETLPDEKSLIDGVMAFVHYNADKALMNLGYPPQYEEEAAKTEP--- 299
Query: 323 MSEVI-----DLKKEKNFFETRVTEYQQG---AELKWD 352
E+I D + +FF + Y G + + D
Sbjct: 300 --EIIAALAPDSNETHDFFSGSGSSYVIGRAESTEEDD 335
>gi|255325476|ref|ZP_05366578.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
tuberculostearicum SK141]
gi|255297414|gb|EET76729.1| ribonucleoside-diphosphate reductase, beta subunit [Corynebacterium
tuberculostearicum SK141]
Length = 362
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 59/338 (17%), Positives = 118/338 (34%), Gaps = 44/338 (13%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +DL W+ +T +ER + R
Sbjct: 53 NWNRVSDDKDLEVWN---RLTANFWLPEKVPLSNDLPAWQ---KMTPEERNLTMRVFTGL 106
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+ +++ A + + AF ++VH+ ++ + ++L + E +
Sbjct: 107 TTLDTVQATVGEICQIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLSSTKEIDEAYR 166
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ A+A L + + Y GF
Sbjct: 167 WAVNNDLLQARAKKVLAHYFGPDPLKRKVSSTLLSSL---------------LLYAGFYL 211
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L + A+ + I+RD+++H + + L KE + ++L E
Sbjct: 212 PLHFSVHATLTNTADMIRLILRDKAVHGYYSGYKYQRGLESTTPLRQKEMHDFTISLLEE 271
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
LE+ Y+ E +GL ++++ AN+ +G F E NP
Sbjct: 272 LYALELDYSGELYE--PLGL-MDDVAVFVRYNANKALMNLGYPDYFPPEETEVNP----- 323
Query: 325 EVI-----DLKKEKNFFETRVTEYQQG-----AELKWD 352
E++ + +FF + Y G ++ WD
Sbjct: 324 EILAALAPGADENHDFFSGSGSSYVIGTAEETSDDDWD 361
>gi|312865304|ref|ZP_07725532.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
downei F0415]
gi|311099415|gb|EFQ57631.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
downei F0415]
Length = 316
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 69/307 (22%), Positives = 122/307 (39%), Gaps = 28/307 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ A W+ T VP+ +DL WK L+D E+ ++K+ +G A ++L + + AI
Sbjct: 20 WDKATAQFWLDTRVPVSNDLLDWKQ---LSDLEKTVVKKAVGGLALLDTLQSEEGLYAIK 76
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWAL 163
++ + F E++H+ T+ I+ SL + +++ P + KA
Sbjct: 77 KNARTQKELAVFSDFNFMESIHAKTYGTILISLNTFKDIEAIYDWMDNDPRMQFKAQRVN 136
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
Y Q S + V + EG+ +Y+ F L NK+ +AE
Sbjct: 137 DYYQNGS---------------PLQVMVASIFLEGILYYSNFFIPLWYRGQNKLANLAEL 181
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ ++RDES+H + Q E +FQ+ L E E AY E
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQGFDELSPEDQADFQKWMYGFLDELLENEFAYTEEVYSD- 240
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFETR 339
+GL + ++++ AN+ +G F+ NP M+ + +FF
Sbjct: 241 -IGL-EDDIKTFVKYNANKSLQNMGFGIYFENATANDVNPIV-MNGISIETANHDFFSQV 297
Query: 340 VTEYQQG 346
Y G
Sbjct: 298 GAGYLMG 304
>gi|301066519|ref|YP_003788542.1| ribonucleotide reductase subunit beta [Lactobacillus casei str.
Zhang]
gi|300438926|gb|ADK18692.1| Ribonucleotide reductase, beta subunit [Lactobacillus casei str.
Zhang]
Length = 326
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 112/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+S L DE+ ++ G ++L + + + ++
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGLTLLDTLQSQDGMASLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+++ + L F E+VH+ ++ I ++L E+F+ + KAN
Sbjct: 79 QNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKANKIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
S+ V E FY+GF L NK+ +AE
Sbjct: 139 DIYHNGSALQKKI---------------ASVFLETFLFYSGFFTPLYYLGNNKLTNVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + + +L + E Y ++ K
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEAEQQTLKDWMYDLLFDLYENEEKYTNDLYAKT 243
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
++++ AN+ +G E F T NP M+ + +FF
Sbjct: 244 NW---TDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MNGISTSTANHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|85726187|gb|ABC79616.1| ribonucleotide reductase beta subunit [Borrelia hermsii DAH]
Length = 321
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 63/325 (19%), Positives = 122/325 (37%), Gaps = 26/325 (8%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+ N+L Y + W+ E+P+ DD +W + L +ER + ++
Sbjct: 5 REAINWNRLNN-SYTKM--FWDQNIRQFWVDEEIPISDDKLVWNT---LDGEERDVYEKV 58
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEG 143
LG ++ + + + + N + + L E +H+ ++ I +SL
Sbjct: 59 LGGLTLLDTEQGSVGMPRLALAIDNLDYKPVLGFMGAMEHMHAKSYSSIFSSLSNIDRID 118
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
+F + + K + L ++ D+ L V E FY+
Sbjct: 119 HIFGWVKTYRNFQDKLDLILGKYNSI-----------HDRMSLYKALCTSVFLETFLFYS 167
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L L KMV E I+RDES+H F + + + Q+++
Sbjct: 168 GFFYPLYLAGQGKMVNSGEIINLILRDESVHGVFVGLLAQEEFNKMTFKEQAFAQREATL 227
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPF 320
+L LE AY + +GL + ++++ A++ +G + F NP
Sbjct: 228 ILERLYYLESAYTKDLY--SSIGLEGA-VDVFVRYNADKALMNLGFDSAFNIRDIDVNPL 284
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQ 345
++ + K +FF T+ Y +
Sbjct: 285 V-LNGLRTNTKTHDFFSTKGNGYIK 308
>gi|295398337|ref|ZP_06808379.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
viridans ATCC 11563]
gi|294973476|gb|EFG49261.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
viridans ATCC 11563]
Length = 317
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 69/311 (22%), Positives = 123/311 (39%), Gaps = 28/311 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ A W+ T VP+ +DL WK L+ E+ ++K+ +G A ++L + + A+
Sbjct: 20 WDKATAQFWLDTRVPVSNDLLEWK---KLSTMEKEIVKKAVGGLALLDTLQSEEGLYALK 76
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
+H + R L F E++H+ T+ I+ SL + E+++ P + KA
Sbjct: 77 KHARTQKERAVLSNFMFMESIHAKTYGTILISLNTFKDIEEIYDWMNNDPMMQFKAEKIN 136
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
Q + V EG+ +Y+ F L NK+ +AE
Sbjct: 137 NIYQNGTPIQVKV---------------ASVFLEGILYYSNFFIPLWYRGQNKLANLAEL 181
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ ++RDES+H + Q E + F Q + L E E A+ E
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQDFEELTQDEQEAFTQWMYSFLEELLEKEFAFTEELY--T 239
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNFFETR 339
+GL A + ++++ AN+ +G F+ NP M+ + +FF
Sbjct: 240 EIGL-AEDIKTFVKYNANKSLQNMGFGIYFENALAKDVNPIV-MNGISIETSNHDFFSQV 297
Query: 340 VTEYQQGAELK 350
Y G +
Sbjct: 298 GAGYLMGNAEE 308
>gi|313665031|ref|YP_004046902.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
leachii PG50]
gi|312949985|gb|ADR24581.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
leachii PG50]
Length = 339
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 55/326 (16%), Positives = 111/326 (34%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++P+ +DL W+S L+ + + ++ R
Sbjct: 30 NWNVINDEKDLEVWN---RITQNFWLPEKIPVSNDLPSWRS---LSAEWQQLVTRTFTGL 83
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A H + AF VH+ ++ I ++L E E
Sbjct: 84 TLLDTVQATVGDVAQIEHSLTDHEQVIYSNFAFMVGVHARSYGTIFSTLCSSEQIEEAHE 143
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ S+ +A + Y V + G Y GF
Sbjct: 144 WVVKTESLQKRAKALIPYYAGTD---------------PLKSKVAAALMPGFLLYGGFYL 188
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L K+ ++ + I+RD+ +H + + + E ++ +L+E
Sbjct: 189 PFYLSSRAKLPNTSDIVRLILRDKVIHNYYSGYKYQKKVAKLSVEKQAEMKEFVFKLLYE 248
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE Y E + A ++ + A + +G + F E P +
Sbjct: 249 LIDLETDYLKELYAGFDI---ADDAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 305
Query: 327 ID--LKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 306 LSARADENHDFFSGNGSSYVMGVSVE 331
>gi|294155961|ref|YP_003560345.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
crocodyli MP145]
gi|291600208|gb|ADE19704.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
crocodyli MP145]
Length = 340
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 50/322 (15%), Positives = 109/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++P+ +D+ W++ L+D+ + +I R
Sbjct: 31 NWNIINDDKDLEVWN---RVTQNFWLPEKIPVSNDIPSWRT---LSDEWQTLITRTFTGL 84
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A + + AF AVH+ ++ I ++L + E
Sbjct: 85 TMLDTIQATVCDIAQIPNALTDHEQVIYANFAFMVAVHARSYGTIFSTLCSSDQIEEAHE 144
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ +A + Y E V + G Y GF
Sbjct: 145 WVIANEELQERARILIPYYH---------------CEDPLKSKVAAALMPGFLLYGGFYL 189
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L +K+ ++ + I+RD+ +H + + + E ++ +L+
Sbjct: 190 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSDKRKAELKEFVFELLYR 249
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
E + + + A ++ + A + +G + F E P +
Sbjct: 250 LIDAEKKFLTKLYEGFDL---AEDAIRFSVYNAGKFLQNLGYDSPFTDEETRIEPEIFAQ 306
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 307 LSARADENHDFFSGNGSSYVMG 328
>gi|260904664|ref|ZP_05912986.1| ribonucleoside-diphosphate reductase beta chain [Brevibacterium
linens BL2]
Length = 341
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 53/324 (16%), Positives = 112/324 (34%), Gaps = 41/324 (12%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
E + N W+P +VP+ +D+ W+ LT ER + R +++ A +
Sbjct: 43 EVWNRLTANFWLPEKVPLSNDIPAWQ---RLTQVERTLTMRVFTGLTMLDTVQATVGEIC 99
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANW 161
+ AF ++VH+ ++ + ++L + + + + +
Sbjct: 100 QIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLSTTVEIDDAYRWAVGNDLLQQRCKK 159
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
LQ+ + Y GF L + A
Sbjct: 160 VLQHYYGDDPLKRKVSSTLLSSL---------------LLYAGFYLPLHFSVHATLTNTA 204
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I+RD+++H + + +E ++ + +L + LE+AY+ E
Sbjct: 205 DMIRLILRDKAVHGYYSGYKYQRGIENQTSARQEEMREFTYELLEDLYELELAYSGELYE 264
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI-----DLKKEK 333
+GL ++++ AN+ +G F E NP E++ +
Sbjct: 265 --PLGL-MDDVAVFVRYNANKALMNLGYPARFNSDETQVNP-----EILAALAPGADENH 316
Query: 334 NFFETRVTEYQQG-----AELKWD 352
+FF + Y G ++ WD
Sbjct: 317 DFFSGSGSSYVIGKGEDTSDDDWD 340
>gi|116494955|ref|YP_806689.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
casei ATCC 334]
gi|191638466|ref|YP_001987632.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
casei BL23]
gi|227535043|ref|ZP_03965092.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|239631445|ref|ZP_04674476.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|116105105|gb|ABJ70247.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Lactobacillus casei ATCC 334]
gi|190712768|emb|CAQ66774.1| Ribonucleoside-diphosphate reductase, beta chain [Lactobacillus
casei BL23]
gi|227187358|gb|EEI67425.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|239525910|gb|EEQ64911.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
paracasei subsp. paracasei 8700:2]
gi|327382498|gb|AEA53974.1| hypothetical protein LC2W_1641 [Lactobacillus casei LC2W]
gi|327385696|gb|AEA57170.1| hypothetical protein LCBD_1674 [Lactobacillus casei BD-II]
Length = 326
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 112/303 (36%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+S L DE+ ++ G ++L + + + ++
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWRS---LNHDEQWVVGHVFGGLTLLDTLQSQDGMASLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+++ + L F E+VH+ ++ I ++L E+F+ + KAN
Sbjct: 79 QNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTPAEIDEIFDWTNHNEHLQYKANKIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
S+ V E FY+GF L NK+ +AE
Sbjct: 139 DIYHNGSALQKKI---------------ASVFLETFLFYSGFFTPLYYLGNNKLTNVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + E P + + +L + E Y ++ K
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELPEAEQQTLKDWMYDLLFDLYENEEKYTNDLYAKT 243
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRV 340
++++ AN+ +G E F T NP M+ + +FF
Sbjct: 244 NW---TDEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MNGISTSTANHDFFSQVG 299
Query: 341 TEY 343
Y
Sbjct: 300 NGY 302
>gi|46255232|ref|YP_006144.1| ribonucleoside-diphosphate reductase beta chain [Thermus
thermophilus HB27]
gi|46198081|gb|AAS82491.1| ribonucleoside-diphosphate reductase beta chain [Thermus
thermophilus HB27]
Length = 324
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 64/320 (20%), Positives = 118/320 (36%), Gaps = 18/320 (5%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
P +Y + +++W+ TE Q DL + ER +++R L A
Sbjct: 7 RLAYRPYEYPELLRFRDAIRHSYWVHTEFSFQSDLQD---HALADEKERSLVERALLAIA 63
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E L +Y PE + L A E H++ + + L E F
Sbjct: 64 QVE-LAVKLFWARVYDRFPKPEIAEVGLTFAESEVRHANAYAH--LLELLGLEEAFGQAL 120
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
E S AL + +E+ LF+F E + ++ F +++
Sbjct: 121 EGASALRDRAQAL-------GEALRRAQGKDLREYALALFLFSAFTEHVSLFSQFYVLMA 173
Query: 211 LGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
L R + GI+ + ++E++H FG++++ ++ E+P + FQ+++ +
Sbjct: 174 LNRRGNRYKGISNAIEATSKEENVHGLFGVELLRLLRTEHPEALGEGFQEEALRLAQGLF 233
Query: 270 LLEIAYAHETMPKGFVGL-NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSE 325
E A G L ++++ N+ GL P F E W +
Sbjct: 234 RAEEALLDWLFSAGEPALVGHRETLEFLKGRYNQVLALHGLPPPFPVDEKALRDTEWFTL 293
Query: 326 VIDLKKEKNFFETRVTEYQQ 345
+ KE +FF R Y +
Sbjct: 294 ELLADKEVDFFNKRSVAYAR 313
>gi|171779436|ref|ZP_02920400.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282053|gb|EDT47484.1| hypothetical protein STRINF_01281 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 316
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 71/316 (22%), Positives = 127/316 (40%), Gaps = 31/316 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ A W+ T VP+ +DL W+ L+D E+ ++K+ +G A ++L + + A+
Sbjct: 20 WDKATAQFWLDTRVPVSNDLLDWR---KLSDMEKEVVKKAVGGLALLDTLQSEEGLYALK 76
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
++ + R L F E++H+ T+ I+ SL + E++N + KA
Sbjct: 77 KNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYNWMNNDRRMQFKARKIN 136
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ Q + + V V EG+ +Y+ F L NK+ +AE
Sbjct: 137 EIYQNGT---------------PMQVKVASVFLEGILYYSNFFIPLWYRGQNKLANLAEL 181
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ ++RDES+H + Q E + F + L E E AY E +
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQDFNELAITEQENFTNWMYSFLEELLDNEFAYTEEVYSE- 240
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK----YTENPFPWMSEVIDLKKEKNFFETR 339
+GL + ++++ AN+ +G + FK NP M+ + +FF
Sbjct: 241 -IGL-VEDIKTFVKYNANKSLQNMGFDIYFKDASANDVNPIV-MNGISIETANHDFFSQV 297
Query: 340 VTEYQQGAE---LKWD 352
Y G L D
Sbjct: 298 GAGYLMGEAEEMLDDD 313
>gi|260102934|ref|ZP_05753171.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus
DSM 20075]
gi|111610216|gb|ABH11600.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
helveticus CNRZ32]
gi|260083260|gb|EEW67380.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus helveticus
DSM 20075]
Length = 340
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 58/337 (17%), Positives = 110/337 (32%), Gaps = 31/337 (9%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+K E + N W+P ++P+ +D++ W N L+DD + +I R
Sbjct: 24 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
++ A+ +A ++ + AF AVH+ ++ I ++L E
Sbjct: 81 FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ A+A + Y V + G Y
Sbjct: 141 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 185
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L K+ A+ + I+RD+ +H + + E ++
Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 245
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
L + LE Y HE + + + A + +G + F E +P
Sbjct: 246 FLDKLIDLEKKYLHELYGDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 302
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
+ + +FF + Y G + WD
Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339
>gi|328464295|gb|EGF35725.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
helveticus MTCC 5463]
Length = 335
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 58/337 (17%), Positives = 110/337 (32%), Gaps = 31/337 (9%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+K E + N W+P ++P+ +D++ W N L+DD + +I R
Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
++ A+ +A ++ + AF AVH+ ++ I ++L E
Sbjct: 76 FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ A+A + Y V + G Y
Sbjct: 136 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 180
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L K+ A+ + I+RD+ +H + + E ++
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
L + LE Y HE + + + A + +G + F E +P
Sbjct: 241 FLDKLIDLEKKYLHELYGDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
+ + +FF + Y G + WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334
>gi|313892092|ref|ZP_07825688.1| ribonucleoside-diphosphate reductase, beta subunit [Dialister
microaerophilus UPII 345-E]
gi|329121529|ref|ZP_08250153.1| ribonucleotide-diphosphate reductase subunit beta [Dialister
micraerophilus DSM 19965]
gi|313119484|gb|EFR42680.1| ribonucleoside-diphosphate reductase, beta subunit [Dialister
microaerophilus UPII 345-E]
gi|327469444|gb|EGF14914.1| ribonucleotide-diphosphate reductase subunit beta [Dialister
micraerophilus DSM 19965]
Length = 338
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 120/358 (33%), Gaps = 39/358 (10%)
Query: 5 TGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
SP++ + + + + + N + K W N W+P +PM +D
Sbjct: 9 KSQSPVEYAYAKDKKNMRSI-----NWNVMNDDKDLEVWN---RVTQNFWLPENIPMSND 60
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEE 124
+ W + L+DD + ++ R +++ A+ +A ++ + AF
Sbjct: 61 IPSWNT---LSDDWKQLVTRTFTGLTLLDTVQASIGDIAQIKNSVTDHEQVIYANFAFMV 117
Query: 125 AVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD 182
VH+ ++ I ++L E E ++ A+A + Y
Sbjct: 118 GVHARSYGTIFSTLCSSEQIEEAHEWVVNNDALQARAKLLIPYYTGDD------------ 165
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVI 242
V + G Y GF L K+ ++ + I+RD+ +H +
Sbjct: 166 ---PLRSKVAAALMPGFLLYGGFYLPFYLASRAKLPNTSDMIRLILRDKVIHNYYSGYKY 222
Query: 243 NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANR 302
Q + E ++ ++ E LE Y + + A ++ + A +
Sbjct: 223 QQKIAKENDARKAEMKKFVFDLMEEEIELEKIYLRDLYKGFDI---ADDAIRFSVYNAGK 279
Query: 303 RCHQIGLEPLFKYTENPF-PWMSEVID--LKKEKNFFETRVTEYQQGAELK-----WD 352
+G + F E P + + + +FF + Y G + WD
Sbjct: 280 FLQNLGYDSPFSEEETHIAPEVFAQLSARADENHDFFSGSGSSYVIGTTEETTDEDWD 337
>gi|293363858|ref|ZP_06610594.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
alligatoris A21JP2]
gi|292552348|gb|EFF41122.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
alligatoris A21JP2]
Length = 340
Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats.
Identities = 51/322 (15%), Positives = 108/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++P+ +D+ W++ L+D+ + +I R
Sbjct: 31 NWNIIDDDKDLEVWN---RITQNFWLPEKIPVSNDIPSWRT---LSDEWQTLITRTFTGL 84
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A + + AF AVH+ ++ I ++L E E
Sbjct: 85 TMLDTIQATVCDIAQIPNSLTDHEQVIYANFAFMVAVHARSYGTIFSTLCSSEQIEEAHE 144
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ + +A L Y V + G Y GF
Sbjct: 145 WVIDNEDLQERARLLLPYYHNED---------------PLKSKVAAALMPGFLLYGGFYL 189
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L +K+ ++ + I+RD+ +H + + E + +L +
Sbjct: 190 PFWLSARSKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVARLSEARKAEMKTFVFELLDK 249
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
+ E + + + A ++ + A + +G + F E P +
Sbjct: 250 LIVAEKKFLTKLYEGFDL---ADDAIRFSVYNAGKFLQNLGYDSPFTEEETRIEPEIFAQ 306
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 307 LSARADENHDFFSGNGSSYVMG 328
>gi|161508077|ref|YP_001578044.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
helveticus DPC 4571]
gi|160349066|gb|ABX27740.1| ribonucleoside-diphosphate reductase [Lactobacillus helveticus DPC
4571]
Length = 340
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 58/337 (17%), Positives = 110/337 (32%), Gaps = 31/337 (9%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+K E + N W+P ++P+ +D++ W N L+DD + +I R
Sbjct: 24 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 80
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
++ A+ +A ++ + AF AVH+ ++ I ++L E
Sbjct: 81 FTGLTLLDTTQASVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ A+A + Y V + G Y
Sbjct: 141 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 185
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L K+ A+ + I+RD+ +H + + E ++
Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 245
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
L + LE Y HE + + + A + +G + F E +P
Sbjct: 246 FLDKLIDLEKKYLHELYGDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYISPE 302
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
+ + +FF + Y G + WD
Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339
>gi|146322252|ref|YP_001174719.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis]
gi|145968743|gb|ABQ00021.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis]
Length = 316
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 70/316 (22%), Positives = 126/316 (39%), Gaps = 31/316 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ A W+ T VP+ +DL W+ L+D E+ ++K+ +G A ++L + + A+
Sbjct: 20 WDKATAQFWLDTRVPVSNDLLDWR---KLSDMEKEVVKKAVGGLALLDTLQSEEGLYALK 76
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
++ + R L F E++H+ T+ I+ SL + E++ + KA
Sbjct: 77 KNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYTWMNNDRRMQFKAKKIN 136
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ Q + + V V EG+ +Y+ F L NK+ +AE
Sbjct: 137 EIYQNGT---------------PMQVKVASVFLEGILYYSNFFIPLWYRGQNKLANLAEL 181
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ ++RDES+H + Q E + F + L E E AY E +
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQDFNELSITEQENFTNWMYSFLEELLDNEFAYTEEVYSE- 240
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK----YTENPFPWMSEVIDLKKEKNFFETR 339
+GL + ++++ AN+ +G + FK NP M+ + +FF
Sbjct: 241 -IGL-VEDIKTFVKYNANKSLQNMGFDIYFKDASANDVNPIV-MNGISIETANHDFFSQV 297
Query: 340 VTEYQQGAE---LKWD 352
Y G L D
Sbjct: 298 GAGYLMGEAEEMLDDD 313
>gi|238852996|ref|ZP_04643394.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
gasseri 202-4]
gi|282851729|ref|ZP_06261093.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
gasseri 224-1]
gi|238834391|gb|EEQ26630.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
gasseri 202-4]
gi|282557132|gb|EFB62730.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
gasseri 224-1]
Length = 335
Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats.
Identities = 57/337 (16%), Positives = 110/337 (32%), Gaps = 31/337 (9%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+K E + N W+P ++P+ +D++ W N L+DD + +I R
Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
++ ++ +A ++ + AF AVH+ ++ I ++L E
Sbjct: 76 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ A+A + Y V + G Y
Sbjct: 136 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 180
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L K+ A+ + I+RD+ +H + + E ++
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
L + LE Y HE + + + A + +G + F E +P
Sbjct: 241 FLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
+ + +FF + Y G + WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334
>gi|19745563|ref|NP_606699.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS8232]
gi|19747686|gb|AAL97198.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes
MGAS8232]
Length = 337
Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats.
Identities = 60/322 (18%), Positives = 108/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N L K W N W+P +VP+ +DL W+S L +D + +I R
Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF +H+ ++ I ++L E E
Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ ++ + Y V + G Y GF
Sbjct: 142 WVVSTQSLQDRSRVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM ++ + I+RD+ +H + Q E + +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G + F E P +
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325
>gi|322411231|gb|EFY02139.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 337
Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats.
Identities = 64/322 (19%), Positives = 110/322 (34%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N L K W N W+P +VP+ +DL W+S L +D + +I RN
Sbjct: 28 NWNHLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRNYTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF A+H+ ++ I ++L E E
Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHE 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ +A + Y V + G Y GF
Sbjct: 142 WVVSTQSLQERARVLIPYYTGND---------------PLKSKVAAAMMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM ++ + I+RD+ +H + Q E + +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVAGLSPEKQTEMKTFVFDLLYE 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G E F E P +
Sbjct: 247 LIDLEKAYLKELYDGFDL---AEDAIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325
>gi|86156146|gb|ABC86791.1| ribonucleotide reductase beta subunit [Borrelia turicatae]
Length = 321
Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats.
Identities = 68/332 (20%), Positives = 128/332 (38%), Gaps = 26/332 (7%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
M + N+L Y + W+ E+P+ DD +W S L DER + +
Sbjct: 3 MNREAINWNRLNN-GYTKM--FWDQNIRQFWVDEEIPISDDKLVWNS---LDIDERDVYE 56
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
+ LG ++ + + I + N + L E +H+ ++ I +SL E
Sbjct: 57 KVLGGLTLLDTEQGSVGMPRIALAIDNLAYKPVLGFMGAMEHMHAKSYSSIFSSLSNIER 116
Query: 144 --ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWF 201
+F+ + + K + L + D+ L V E F
Sbjct: 117 IDYIFDWVKTYRNFQDKLDLILGKYNNI-----------HDRMSLYKALCTSVFLETFLF 165
Query: 202 YTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
Y+GF L L KM+ E I+RDES+H F + + + + +++
Sbjct: 166 YSGFFYPLYLAGQGKMINSGEIINLILRDESVHGVFVGLLAQEEFNKMTSREQEFAYKEA 225
Query: 262 RTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTEN 318
+L LE AY + +GL + + ++++ A++ +G EP F N
Sbjct: 226 MFILDRLYDLEKAYTKDLY--SSIGLESA-VDVFVRYNADKALMNLGFEPTFNIQDIDVN 282
Query: 319 PFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
P ++ + K +FF T+ Y + +++
Sbjct: 283 PLV-LNGLRTDTKTHDFFSTKGNGYIKPMKIE 313
>gi|293380788|ref|ZP_06626833.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus 214-1]
gi|290922652|gb|EFD99609.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus 214-1]
Length = 335
Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats.
Identities = 57/337 (16%), Positives = 110/337 (32%), Gaps = 31/337 (9%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+K E + N W+P ++P+ +D++ W N L+DD + +I R
Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
++ ++ +A ++ + AF AVH+ ++ I ++L E
Sbjct: 76 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ A+A + Y V + G Y
Sbjct: 136 EAHEWVVNNDTLQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 180
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L K+ A+ + I+RD+ +H + + E ++
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
L + LE Y HE + + + A + +G + F E +P
Sbjct: 241 FLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
+ + +FF + Y G + WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETTDDDWD 334
>gi|323467364|gb|ADX71051.1| Ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
helveticus H10]
Length = 340
Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 56/337 (16%), Positives = 109/337 (32%), Gaps = 31/337 (9%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+K E + N W+P ++P+ +D++ W L+DD + +I R
Sbjct: 24 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSWNQ---LSDDWQQLITRT 80
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
++ ++ +A ++ + AF AVH+ ++ I ++L E
Sbjct: 81 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ A+A + Y V + G Y
Sbjct: 141 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 185
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L K+ A+ + I+RD+ +H + + E ++
Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFN 245
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
L + LE Y HE + + + A + +G + F E +P
Sbjct: 246 FLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYISPE 302
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
+ + +FF + Y G + WD
Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339
>gi|300173988|ref|YP_003773154.1| ribonucleoside-diphosphate reductase subunit beta [Leuconostoc
gasicomitatum LMG 18811]
gi|299888367|emb|CBL92335.1| ribonucleoside-diphosphate reductase, beta subunit [Leuconostoc
gasicomitatum LMG 18811]
Length = 325
Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 65/303 (21%), Positives = 113/303 (37%), Gaps = 26/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ ++D ER + G + ++L + + + +
Sbjct: 26 WEKLTQQFWLDTRIPISNDLKTWR--GNMSDQERQTMNLVFGGLTTLDTLQSQDGMAQLK 83
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWAL 163
+ N + L F E+VH+ ++ I +L +F+ + KAN
Sbjct: 84 LDVVNQKEEAVLNNIQFMESVHAKSYSSIFETLNEKTEIEAIFDWADTNEFLQYKANRIN 143
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
QT S V E FY+GF L NKM+ +AE
Sbjct: 144 GIYQTGSPLQKKI---------------ASVFLETFLFYSGFYTPLYFLGHNKMLNVAEI 188
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + P E Q +L+E E Y H+
Sbjct: 189 IKLIIRDESVHGTYIGYKFQIGFNQLPAEEKSELQSWMYDLLYELYENEEKYTHQLYDD- 247
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
+G ++++ AN+ +G EP+F NP M+ + +FF
Sbjct: 248 -LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGADDVNPVV-MNGISTSTANHDFFSGVG 304
Query: 341 TEY 343
Y
Sbjct: 305 NGY 307
>gi|256849455|ref|ZP_05554887.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
crispatus MV-1A-US]
gi|262046124|ref|ZP_06019087.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus MV-3A-US]
gi|256713571|gb|EEU28560.1| ribonucleoside-diphosphate reductase 2 alpha subunit [Lactobacillus
crispatus MV-1A-US]
gi|260573454|gb|EEX30011.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus MV-3A-US]
Length = 335
Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 57/337 (16%), Positives = 110/337 (32%), Gaps = 31/337 (9%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+K E + N W+P ++P+ +D++ W N L+DD + +I R
Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
++ ++ +A ++ + AF AVH+ ++ I ++L E
Sbjct: 76 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ A+A + Y V + G Y
Sbjct: 136 EAHEWVVNNDTLQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 180
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L K+ A+ + I+RD+ +H + + E ++
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
L + LE Y HE + + + A + +G + F E +P
Sbjct: 241 FLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 297
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
+ + +FF + Y G + WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334
>gi|326783253|ref|YP_004323801.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33]
gi|310005200|gb|ADO99589.1| ribonucleotide reductase A subunit [Prochlorococcus phage Syn33]
Length = 296
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 66/267 (24%), Positives = 107/267 (40%), Gaps = 23/267 (8%)
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
+S+ +A + S PE +L F E +HS ++ YII ++ D E+F+
Sbjct: 1 MLDSVQGRGPGMAFIPYCSLPELEASMLVWEFMEMIHSRSYTYIIKNVYPDPSEVFDTIL 60
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDAD-----------------QEFLQDLFVFY 193
E I +A+ + + + T + L
Sbjct: 61 EDEKILDRASSVTESYDDFINHAHQYDTSTMWELAKDGHYAGQFDRRELKRKLYRAVANV 120
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ EG+ FYT FA + G M G A+ I RDES HL +++N+ + +
Sbjct: 121 NILEGIRFYTSFACSFAFGENKLMEGSAKILSLIARDESQHLVLTQNILNKWRDGDDPEM 180
Query: 254 T---KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGL 309
KE Q +M A E +A G +GLN Y+++IANRR I +
Sbjct: 181 DIIAKEEQSWVMSMFQRAVDEEKMWAEYLFKNGSMIGLNERLLHNYVEWIANRRMKAICI 240
Query: 310 EPLF--KYTENPFPWMSEVIDLKKEKN 334
+P+F NP PW ++ K ++N
Sbjct: 241 KPMFDIPAKNNPLPWTEHWLNSKGQQN 267
>gi|25010526|ref|NP_734921.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
agalactiae NEM316]
gi|23094879|emb|CAD46097.1| unknown [Streptococcus agalactiae NEM316]
Length = 336
Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats.
Identities = 57/322 (17%), Positives = 113/322 (35%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W N W+P ++P+ +DL W++ L D + +I R
Sbjct: 27 NWNKLNDDKDLEVWN---RVTQNFWLPEKIPVSNDLNSWRT---LDADWQQLITRTFTGL 80
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+S+ A +A +H + AF A+H+ ++ I ++L + E
Sbjct: 81 TLLDSVQATVGDIAQIKHSQTDHEQVIYANFAFMVAIHARSYGTIFSTLCTSQQIEEAHE 140
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ S+ A++ + + V + G Y GF
Sbjct: 141 WVVDTESLQARSRILIPFYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 185
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L K+ ++ + I+RD+ +H + Q + E + +L++
Sbjct: 186 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVAKLSVEKQAEMKTFVFDLLYQ 245
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY +E + A ++ + A + +G + F E P +
Sbjct: 246 LIDLEKAYLYELYDGFDL---AEDAIRFSNYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 302
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 303 LSARADENHDFFSGNGSSYIMG 324
>gi|9625893|ref|NP_040141.1| ribonucleotide reductase subunit 2 [Human herpesvirus 3]
gi|132630|sp|P09247|RIR2_VZVD RecName: Full=Ribonucleoside-diphosphate reductase small chain;
Short=R2; AltName: Full=Ribonucleotide reductase small
subunit
gi|259645448|sp|Q4JQV7|RIR2_VZVO RecName: Full=Ribonucleoside-diphosphate reductase small chain;
Short=R2; AltName: Full=Ribonucleotide reductase small
subunit
gi|60007|emb|CAA27901.1| ribonucleotide reductase (small subunit) [Human herpesvirus 3
strain Dumas]
gi|46981429|gb|AAT07700.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
gi|46981500|gb|AAT07776.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
gi|66865986|gb|AAY57634.1| ORF18 [Human herpesvirus 3]
gi|66866058|gb|AAY57705.1| ORF18 [Human herpesvirus 3]
gi|83721826|emb|CAI44861.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
gi|90992817|gb|ABE03036.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
gi|91980319|gb|ABE67126.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
gi|94481816|gb|ABF21518.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
gi|94481890|gb|ABF21591.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
gi|94481964|gb|ABF21664.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
gi|94482038|gb|ABF21737.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
gi|94482112|gb|ABF21810.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
gi|94482186|gb|ABF21883.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
gi|94482260|gb|ABF21956.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
gi|94482334|gb|ABF22029.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
gi|94482408|gb|ABF22102.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
gi|94482482|gb|ABF22175.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
gi|94482556|gb|ABF22248.1| small subunit ribonucleotide reductase [Human herpesvirus 3]
gi|111184743|gb|ABH08451.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
gi|157965778|gb|ABW06924.1| ribonucleotide reductase small subunit [Human herpesvirus 3]
Length = 306
Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats.
Identities = 66/316 (20%), Positives = 125/316 (39%), Gaps = 30/316 (9%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
+ +N W+ ++ ++DD ++ + LT+DE + + F ++++ LV N
Sbjct: 16 PDINNLRALSISNRWLESDFIIEDD---YQYLDCLTEDELIFYRFIFTFLSAADDLVNVN 72
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
+ ++ + S + Y + Q E VH+ + I L + L Y V
Sbjct: 73 -LGSLTQLFSQKDIHHYYIEQECIEVVHARVYSQIQLMLFRGDESLRVQYVNVTINNPSI 131
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVG 219
+Q+ + + + K ++ ++ EG++F + FA I L V
Sbjct: 132 QQKVQWLEEKVRDNPSVAEK----------YILMILIEGIFFVSSFAAIAYLRNNGLFVV 181
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ I RDE++H + + N E P + + + EA +E A+
Sbjct: 182 TCQFNDLISRDEAIHTSASCCIYNNYVPEKPAIT------RIHQLFSEAVEIECAFLKSH 235
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY----TENPFPWMSEVIDLKKEKNF 335
PK + +N + QY++F A+R I + LF ++ P +M K NF
Sbjct: 236 APKTRL-VNVDAITQYVKFSADRLLSAINVPKLFNTPPPDSDFPLAFM----IADKNTNF 290
Query: 336 FETRVTEYQQGAELKW 351
FE T Y G +
Sbjct: 291 FERHSTSYA-GTVIND 305
>gi|296111477|ref|YP_003621859.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc
kimchii IMSNU 11154]
gi|295833009|gb|ADG40890.1| ribonucleotide-diphosphate reductase beta subunit [Leuconostoc
kimchii IMSNU 11154]
Length = 325
Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats.
Identities = 65/303 (21%), Positives = 115/303 (37%), Gaps = 26/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ ++D ER + G + ++L + + + +
Sbjct: 26 WEKLTQQFWLDTRIPISNDLKNWR--GNMSDQERQTMNLVFGGLTTLDTLQSQDGMAQLK 83
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWAL 163
+ N + L F E+VH+ ++ I +L +F+ + KAN
Sbjct: 84 LDVVNQKEEAVLNNIQFMESVHAKSYSSIFETLNEKSEIEAIFDWADTNEFLQYKANRIN 143
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
QT +S V E FY+GF L NKM+ +AE
Sbjct: 144 DIYQTGTSLQKKI---------------ASVFLETFLFYSGFYTPLYFLGHNKMLNVAEI 188
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + P + Q +L+E E Y HE
Sbjct: 189 IKLIIRDESVHGTYIGYKFQIGFNKLPLAEQESLQSWMYDLLYELYENEEKYTHELYDD- 247
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
+G + ++++ AN+ +G EP+F NP M+ + +FF
Sbjct: 248 -LGWS-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGISTSTANHDFFSGVG 304
Query: 341 TEY 343
Y
Sbjct: 305 NGY 307
>gi|312984313|ref|ZP_07791656.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus CTV-05]
gi|310894278|gb|EFQ43357.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus CTV-05]
Length = 335
Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats.
Identities = 57/337 (16%), Positives = 110/337 (32%), Gaps = 31/337 (9%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+K E + N W+P ++P+ +D++ W N L+DD + +I R
Sbjct: 19 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 75
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
++ ++ +A ++ + AF AVH+ ++ I ++L E
Sbjct: 76 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 135
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ A+A + Y V + G Y
Sbjct: 136 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 180
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L K+ A+ + I+RD+ +H + + E ++
Sbjct: 181 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 240
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
L + LE Y HE + + + A + +G + F E +P
Sbjct: 241 FLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGYDTPFTAEETYISPE 297
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
+ + +FF + Y G + WD
Sbjct: 298 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 334
>gi|300362830|ref|ZP_07059004.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
gasseri JV-V03]
gi|300353120|gb|EFJ68994.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
gasseri JV-V03]
Length = 340
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 56/337 (16%), Positives = 109/337 (32%), Gaps = 31/337 (9%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+K E + N W+P ++P+ +D++ W L+DD + +I R
Sbjct: 24 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSWNQ---LSDDWQQLITRT 80
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
++ ++ +A ++ + AF AVH+ ++ I ++L E
Sbjct: 81 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 140
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ A+A + Y V + G Y
Sbjct: 141 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 185
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L K+ A+ + I+RD+ +H + + E ++
Sbjct: 186 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 245
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
L + LE Y HE + + + A + +G + F E +P
Sbjct: 246 FLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYISPE 302
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
+ + +FF + Y G + WD
Sbjct: 303 VFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 339
>gi|71903000|ref|YP_279803.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS6180]
gi|71802095|gb|AAX71448.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
pyogenes MGAS6180]
Length = 337
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/322 (18%), Positives = 108/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N L K W N W+P +VP+ +DL W+S L +D + +I R
Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF +H+ ++ I ++L E E
Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ ++ + Y V + G Y GF
Sbjct: 142 WVVSTQSLQDRSRVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM ++ + I+RD+ +H + Q E + +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G + F E P +
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYDSPFTDEETRISPEVFAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325
>gi|284931055|gb|ADC30993.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma
gallisepticum str. F]
Length = 339
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/322 (16%), Positives = 107/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++P+ +DL W LT + + ++ R
Sbjct: 30 NWNVINDPKDLEVWT---RVTQNFWLPEKIPVSNDLKSWNE---LTPEWKQLVTRTFTGL 83
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +A + + +F VH+ ++ I ++L + E
Sbjct: 84 TLLDTIQCTLGDIAQIPNSLTDHEQFVYANFSFMVGVHARSYGTIFSTLNTSDEIEEAHE 143
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ A+A + + Y + + + G Y GF
Sbjct: 144 WVINNEKLQARAKFLVPYYTSDD---------------PLKSKIAAALMPGFLLYGGFYL 188
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L K+ ++ + I+RD+ +H + + P +E+++ +L +
Sbjct: 189 PFYLAARGKLPNTSDIIRLILRDKVIHNYYSGYKYRLKVQKLPKEKQEEYKKFVFEILDK 248
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE + E GL A + + A + G E F E P +
Sbjct: 249 LIELEKDFLRELYDG--FGL-ADEAIAFSLYNAGKFLQNCGYESPFTPEETKISPEVFAQ 305
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 306 LSARADENHDFFSGNGSSYIMG 327
>gi|251781888|ref|YP_002996190.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242390517|dbj|BAH80976.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|323126699|gb|ADX23996.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 337
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 63/322 (19%), Positives = 109/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N L K W N W+P +VP+ +DL W+S L +D + +I R
Sbjct: 28 NWNHLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLTSWRS---LGEDWQQLITRTYTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF A+H+ ++ I ++L E E
Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSSEQIEEAHE 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ +A + Y V + G Y GF
Sbjct: 142 WVVSTQSLQERARVLIPYYTGND---------------PLKSKVAAAMMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM ++ + I+RD+ +H + Q E + +L+E
Sbjct: 187 PFYLSARGKMSNTSDIIRLILRDKVIHNYYSGYKYQQKVAGLSPEKQAEMKTFVFDLLYE 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G E F E P +
Sbjct: 247 LIDLEKAYLKELYDGFDL---AEDAIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325
>gi|139474322|ref|YP_001129038.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes str. Manfredo]
gi|134272569|emb|CAM30835.1| ribonucleoside-diphosphate reductase beta subunit [Streptococcus
pyogenes str. Manfredo]
Length = 337
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 61/322 (18%), Positives = 108/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N L K W N W+P +VP+ +DL W+S L +D + +I R
Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF +H+ ++ I ++L E E
Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ +A + Y V + G Y GF
Sbjct: 142 WVVSTQSLQDRARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM ++ + I+RD+ +H + Q E + +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G + F E P +
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYDSPFTDEETRISPEVFAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325
>gi|227833718|ref|YP_002835425.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
aurimucosum ATCC 700975]
gi|227454734|gb|ACP33487.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
aurimucosum ATCC 700975]
Length = 341
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 59/338 (17%), Positives = 118/338 (34%), Gaps = 44/338 (13%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +DL W+ +T +ER + R
Sbjct: 32 NWNRVSDDKDLEVWN---RLTANFWLPEKVPLSNDLPAWQ---RMTPEERNLTMRVFTGL 85
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+ +++ A + + AF ++VH+ ++ + ++L + E +
Sbjct: 86 TTLDTVQATVGEICQIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLSSTKEIDEAYR 145
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ A+A L + + Y GF
Sbjct: 146 WAVNNDLLQARAKKVLAHYFGPDPLKRKVSSTLLSSL---------------LLYAGFYL 190
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L + A+ + I+RD+++H + + L KE + ++L E
Sbjct: 191 PLHFSVHATLTNTADMIRLILRDKAVHGYYSGYKYQRGLESTTPLRQKEMHDFTISLLEE 250
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
LE+ Y+ E +GL ++++ AN+ +G F E NP
Sbjct: 251 LYALELDYSGELYE--PLGL-MDDVAVFVRYNANKALMNLGYPDYFPPEETEVNP----- 302
Query: 325 EVI-----DLKKEKNFFETRVTEYQQG-----AELKWD 352
E++ + +FF + Y G ++ WD
Sbjct: 303 EILAALAPGADENHDFFSGSGSSYVIGTAEETSDDDWD 340
>gi|293572347|ref|ZP_06683339.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E980]
gi|291607581|gb|EFF36911.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E980]
Length = 316
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 69/316 (21%), Positives = 126/316 (39%), Gaps = 31/316 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ A W+ T VP+ +DL W+ L+D E+ ++K+ +G A ++L + + A+
Sbjct: 20 WDKATAQFWLDTRVPVSNDLLDWR---KLSDMEKEVVKKAVGGLALLDTLQSEEGLYALK 76
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
++ + R L F E++H+ T+ I+ SL + E++ + KA
Sbjct: 77 KNARTLKERAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYTWMNNDRRMQFKAKKIN 136
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ Q + + V V EG+ +Y+ F L NK+ +AE
Sbjct: 137 EIYQNGT---------------PMQVKVASVFLEGILYYSNFFIPLWYRGQNKLANLAEL 181
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ ++RDES+H + Q E + + + L E E AY E +
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQDFNELSITEQENYTNWMYSFLEELLDNEFAYTEEVYSE- 240
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK----YTENPFPWMSEVIDLKKEKNFFETR 339
+GL + ++++ AN+ +G + FK NP M+ + +FF
Sbjct: 241 -IGL-VEDIKTFVKYNANKSLQNMGFDIYFKDASANDVNPIV-MNGISIETANHDFFSQV 297
Query: 340 VTEYQQGAE---LKWD 352
Y G L D
Sbjct: 298 GAGYLMGEAEEMLDDD 313
>gi|222150734|ref|YP_002559887.1| ribonucleoside-diphosphate reductase minor subunit [Macrococcus
caseolyticus JCSC5402]
gi|222119856|dbj|BAH17191.1| ribonucleoside-diphosphate reductase minor subunit [Macrococcus
caseolyticus JCSC5402]
Length = 322
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 65/311 (20%), Positives = 113/311 (36%), Gaps = 20/311 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ + W+ +E + D+A WK LTDDE+ L ++ A++ + I
Sbjct: 16 FWRQNISQMWVESEFKVSKDIASWKE---LTDDEKFTFNHALAGLTGLDTHQADDGMPLI 72
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANW 161
H + + E +H+ ++ +I T+L L N P + K+
Sbjct: 73 GLHTQDLRKKAVYSFMGMMEQIHAKSYSHIFTTLLPSAETNDLLDNWVVNEPHLKFKSEK 132
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ L K+A V V E FY+GF L L +M
Sbjct: 133 IVSRYHKL-------WGKEATIYDQYMARVASVFLETFLFYSGFYYPLYLAGQGRMTTSG 185
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E + I+ DES+H F ++ E ++ +L E E +Y
Sbjct: 186 EIIRKILLDESIHGVFTGLDAQSLRNEMTEDEKIRADKEMYDLLKELYANEESYTKMLYD 245
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDL-KKEKNFFETR 339
+ VGL Y+Q+ N+ +G EP F+ NP + ++ K +FF +
Sbjct: 246 R--VGLT-EDVLNYVQYNGNKALANLGFEPYFEEKGFNPI--IENALNTSTKNHDFFSVK 300
Query: 340 VTEYQQGAELK 350
Y ++
Sbjct: 301 GDGYVIALNVE 311
>gi|227878534|ref|ZP_03996468.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus
JV-V01]
gi|227861868|gb|EEJ69453.1| ribonucleoside-diphosphate reductase [Lactobacillus crispatus
JV-V01]
Length = 352
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 56/337 (16%), Positives = 109/337 (32%), Gaps = 31/337 (9%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+K E + N W+P ++P+ +D++ W L+DD + +I R
Sbjct: 36 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSWNQ---LSDDWQQLITRT 92
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
++ ++ +A ++ + AF AVH+ ++ I ++L E
Sbjct: 93 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 152
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ A+A + Y V + G Y
Sbjct: 153 EAHEWVVNNDTLQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 197
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L K+ A+ + I+RD+ +H + + E ++
Sbjct: 198 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 257
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
L + LE Y HE + + + A + +G + F E +P
Sbjct: 258 FLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGYDSPFTAEETYVSPE 314
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG-----AELKWD 352
+ + +FF + Y G + WD
Sbjct: 315 VFAQLSAQADENHDFFSGNGSSYVMGTGEETTDDDWD 351
>gi|238594383|ref|XP_002393469.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553]
gi|215460986|gb|EEB94399.1| hypothetical protein MPER_06792 [Moniliophthora perniciosa FA553]
Length = 184
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 2 ANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPM 61
+ L G+ + ++ +L L P++Y W+ Y A + W E+ +
Sbjct: 67 EDLEELRKQFVGDIELPESEEPLLKESKRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDL 126
Query: 62 QDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
DL W N + D+ER I L FFA+S+ +V N+V + E R + Q
Sbjct: 127 SKDLHDWN--NRMNDNERHFISHVLAFFAASDGIVNENLVERFSNEVQAAEARCFYGFQ 183
>gi|46401830|ref|YP_006922.1| putative aerobic ribonucleoside diphosphate reductase, small
subunit [Enterobacteria phage T5]
gi|45775008|gb|AAS77140.1| putative aerobic ribonucleoside diphosphate reductase, small
subunit [Enterobacteria phage T5]
gi|51512032|gb|AAU05231.1| ribonucleotide reductase beta subunit [Enterobacteria phage T5]
gi|59897231|gb|AAX12026.1| ribonucleoside diphosphate reductase I beta chain [Enterobacteria
phage T5]
Length = 381
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 70/314 (22%), Positives = 121/314 (38%), Gaps = 25/314 (7%)
Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
+ L A + W TE+ ++ D W L + + + NL + ++S ++
Sbjct: 32 HPELERLALLARSQFWTETEISLEADKKQW---PNLPREIQEITLLNLAWQTQTDSFISR 88
Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
AI +S PE L + ++ E +HS + II ++ D E + + A+
Sbjct: 89 APEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAFAR 148
Query: 159 ANWALQYTQTL---------------SSPSFTTGTKDADQEFLQDLFVFYVVF---EGMW 200
+++ L + T + +E L Y E M
Sbjct: 149 IADSVELFDELYQLGQYFIAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGLEAMQ 208
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY FA +L + + GIA+ Q I +DE+LH +I + + E K
Sbjct: 209 FYASFACTFALAENDILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVDEAVAK 268
Query: 261 SRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFKYT 316
+ L + EI + H + +GLNA E+Y+ F+ IG+E L T
Sbjct: 269 APAQLLKTLKTEIEWGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVEWPSHLPVIT 328
Query: 317 ENPFPWMSEVIDLK 330
+NP PW+ +D
Sbjct: 329 KNPIPWIMNWLDTT 342
>gi|269867180|ref|XP_002652512.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220062330|gb|EED41544.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 196
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 6/148 (4%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ + P++Y WE Y + W EV M D + + LT +E+
Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D
Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142
Query: 142 EGE---LFNMYREVPSITAKANWALQYT 166
+ E LFN +PSI KA WA ++
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWI 170
>gi|182682906|ref|YP_001837030.1| putative aerobic ribonucleoside diphosphate reductase, small
subunit [Enterobacteria phage EPS7]
gi|182630618|gb|ACB97550.1| putative aerobic ribonucleoside diphosphate reductase, small
subunit [Enterobacteria phage EPS7]
Length = 381
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 71/314 (22%), Positives = 121/314 (38%), Gaps = 25/314 (7%)
Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
+ L + W TE+ ++ D W L D + + NL + ++S ++
Sbjct: 32 HPELERLALLQRSQFWTETEISLEADKKQW---PNLPRDIQEITLLNLAWQTQTDSFISR 88
Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
AI +S PE L + ++ E +HS + II ++ D E + + A+
Sbjct: 89 APEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAFAR 148
Query: 159 ANWALQYTQTL---------------SSPSFTTGTKDADQEFLQDLFVFYVVF---EGMW 200
+++ L + T + +E L Y E M
Sbjct: 149 IADSVELFDELYLLGQYFLAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGLEAMQ 208
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY FA +L + + GIA+ Q I +DE+LH +I + + E K
Sbjct: 209 FYASFACTFALAENDILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVDEALAK 268
Query: 261 SRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFKYT 316
+ T L + EI + H + +GLNA E+Y+ F+ IG+E L T
Sbjct: 269 APTQLLKTLKTEIEWGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVEWPSHLPVIT 328
Query: 317 ENPFPWMSEVIDLK 330
+NP PW+ +D
Sbjct: 329 KNPIPWIMNWLDTT 342
>gi|56807592|ref|ZP_00365501.1| COG0208: Ribonucleotide reductase, beta subunit [Streptococcus
pyogenes M49 591]
Length = 311
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 62/322 (19%), Positives = 108/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N L K W N W+P +VP+ +DL W+S L +D + +I R
Sbjct: 2 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 55
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF +H+ ++ I ++L E E
Sbjct: 56 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 115
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ +A + Y V + G Y GF
Sbjct: 116 WVVSTQSLQDRARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 160
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM ++ + I+RD+ +H + Q E + +L+E
Sbjct: 161 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 220
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G E F E P +
Sbjct: 221 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYESPFTDEETRVSPEVFAQ 277
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 278 LSARADENHDFFSGNGSSYVMG 299
>gi|326632980|ref|YP_004306569.1| putative aerobic ribonucleoside diphosphate reductase small subunit
[Enterobacteria phage SPC35]
gi|321272174|gb|ADW80066.1| putative aerobic ribonucleoside diphosphate reductase small subunit
[Enterobacteria phage SPC35]
Length = 381
Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats.
Identities = 68/314 (21%), Positives = 120/314 (38%), Gaps = 25/314 (7%)
Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
+ L + W TE+ ++ D W L + + + NL + ++S ++
Sbjct: 32 HPELERLALLQRSQFWTETEISLEADKKQW---GNLPREIQEITLLNLAWQTQTDSFISR 88
Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
AI +S PE L + ++ E +HS + II ++ D E + + A+
Sbjct: 89 APEAAIMPLVSRPELEGMLKQWSYFEDLHSRAYSNIIRNVLTDPAEFIDSVTKNQEAFAR 148
Query: 159 ANWALQYTQTL---------------SSPSFTTGTKDADQEFLQDLFVFYVVF---EGMW 200
+++ L + T + +E L Y E M
Sbjct: 149 IADSVELFDELYQLGQYFIAVRDHRGDNTYPETEFPEVKRETQAKLLDAYFAIYGLEAMQ 208
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY FA +L + + GIA+ Q I +DE+LH +I + + E K
Sbjct: 209 FYASFACTFALAENDILQGIAKNLQLIAKDEALHTQMSKAIIQIMFQQFDKDLVNEAVAK 268
Query: 261 SRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLE---PLFKYT 316
+ L + EI + H + +GLNA E+Y+ F+ IG++ L T
Sbjct: 269 APAQLLKTLKTEIEWGHFIFKGRSLIGLNAELLEEYLYFVGRNAFMHIGVKWPSHLPVIT 328
Query: 317 ENPFPWMSEVIDLK 330
+NP PW+ +D
Sbjct: 329 KNPIPWIMNWLDTT 342
>gi|94993745|ref|YP_601843.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS10750]
gi|94547253|gb|ABF37299.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
pyogenes MGAS10750]
Length = 337
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 62/322 (19%), Positives = 108/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N L K W N W+P +VP+ +DL W+S L +D + +I R
Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF +H+ ++ I ++L E E
Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ +A + Y V + G Y GF
Sbjct: 142 WVVSTQSLQDRARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM ++ + I+RD+ +H + Q E + +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G E F E P +
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325
>gi|295397108|ref|ZP_06807219.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
viridans ATCC 11563]
gi|294974650|gb|EFG50366.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
viridans ATCC 11563]
Length = 338
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 61/316 (19%), Positives = 108/316 (34%), Gaps = 31/316 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ + W+ T +P+ +D W+ LT +ER ++ + + ++L + +
Sbjct: 42 WEKLTSQFWLDTRIPVSNDRDDWR---ILTKEERDVVNKAFAGLTALDTLQSEEGANVMR 98
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ L F E+VH+ ++ I SL E+F+ + KA
Sbjct: 99 DAVRTQHEEAVLNNILFMESVHAKSYSTIFISLNTTREIDEIFDWANNNEYLQYKARRIN 158
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ Q + V E FY+GF L NK+ +AE
Sbjct: 159 EIYQNGTGLQQKV---------------ASVFLETYLFYSGFYAPLWYLGNNKLENVAEI 203
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + E + +L + E Y E +
Sbjct: 204 IKLIIRDESVHGTYLGYKFQLGYNQLSIDEQNELKDWMYALLFDLMENEEKYTEEIYTQ- 262
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK----YTENPFPWMSEVIDLKKEKNFFETR 339
VG ++ + AN+ +G EP + NP M+ + +FF
Sbjct: 263 -VGWTKE-VNTFVHYNANKALQNLGFEPFYPDGTAENVNPIV-MNGISTDSSNHDFFSQV 319
Query: 340 VTEYQQG---AELKWD 352
Y G A D
Sbjct: 320 GNSYLMGESEAMGDDD 335
>gi|227504052|ref|ZP_03934101.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
6940]
gi|227199382|gb|EEI79430.1| ribonucleoside-diphosphate reductase [Corynebacterium striatum ATCC
6940]
Length = 304
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/317 (16%), Positives = 113/317 (35%), Gaps = 36/317 (11%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
E + N W+P +VP+ +DL+ W+ +T ER + R + +++ A +
Sbjct: 8 EVWNRLTANFWLPEKVPLSNDLSAWQ---KMTPSERNLTMRVFTGLTTLDTVQATVGEIC 64
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
+ + AF ++VH+ ++ + ++L + E + + A+A
Sbjct: 65 QIQDARTEHEQAVYTNIAFMQSVHARSYSSVFSTLSSTKEIDEAYRWAVNNDLLQARAKK 124
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
L + + Y GF L + A
Sbjct: 125 VLTHYYGPDPLKRKVSSTLLSSL---------------LLYAGFYLPLHFSVHATLTNTA 169
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I+RD+++H + + + +E + + ++L E LE+ Y+ E
Sbjct: 170 DMIRLILRDKAVHGYYSGYKYQRGLESSSPQRQQEMKNFTISLLEELYSLELEYSGELYE 229
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI-----DLKKEK 333
+GL ++++ AN+ +G F E NP E++ +
Sbjct: 230 --PLGL-MDDVAVFVRYNANKALMNLGYPDYFPPEETEVNP-----EILAALAPGADENH 281
Query: 334 NFFETRVTEYQQGAELK 350
+FF + Y G +
Sbjct: 282 DFFSGSGSSYVIGTAEE 298
>gi|209558898|ref|YP_002285370.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes NZ131]
gi|209540099|gb|ACI60675.1| Ribonucleotide reductase of class Ib (aerobic), beta subunit
[Streptococcus pyogenes NZ131]
Length = 337
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 62/322 (19%), Positives = 108/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N L K W N W+P +VP+ +DL W+S L +D + +I R
Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF +H+ ++ I ++L E E
Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ +A + Y V + G Y GF
Sbjct: 142 WVVSTQSLQDRARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM ++ + I+RD+ +H + Q E + +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G E F E P +
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYESPFTDEETRVSPEVFAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325
>gi|31544249|ref|NP_852827.1| ribonucleoside-diphosphate reductase subunit beta [Mycoplasma
gallisepticum str. R(low)]
gi|26398734|sp|Q9XC20|RIR2_MYCGA RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|5565932|gb|AAD45275.1|AF152114_3 ribonucleoside-diphosphate reductase beta chain [Mycoplasma
gallisepticum]
gi|31541093|gb|AAP56395.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma
gallisepticum str. R(low)]
gi|284930288|gb|ADC30227.1| Ribonucleoside-diphosphate reductase subunit beta [Mycoplasma
gallisepticum str. R(high)]
Length = 339
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/322 (16%), Positives = 108/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++P+ +DL W LT + + ++ R
Sbjct: 30 NWNVINDPKDLEVWT---RVTQNFWLPEKIPVSNDLKSWNE---LTPEWKQLVTRTFTGL 83
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ +A + + +F VH+ ++ I ++L + E
Sbjct: 84 TLLDTIQCTLGDIAQIPNSLTDHEQFVYANFSFMVGVHARSYGTIFSTLNTSDEIEEAHE 143
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ A+A + + Y + + + G Y GF
Sbjct: 144 WVINNEKLQARAKFLVPYYTSDD---------------PLKSKIAAALMPGFLLYGGFYL 188
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L K+ ++ + I+RD+ +H + + P +E+++ +L++
Sbjct: 189 PFYLAARGKLPNTSDIIRLILRDKVIHNYYSGYKYRLKVQKLPKEKQEEYKKFVFEILYK 248
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE + E GL A + + A + G E F E P +
Sbjct: 249 LIELEKDFLRELYDG--FGL-ADEAIAFSLYNAGKFLQNCGYESPFTPEETKISPEVFAQ 305
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 306 LSARADENHDFFSGNGSSYIMG 327
>gi|255683173|ref|YP_003084381.1| UL40 [Duck enteritis virus]
gi|158343199|gb|ABW35292.1| ribonucleotide reductase subunit 2 [Anatid herpesvirus 1]
gi|208401182|gb|ACI26683.1| UL40 [Anatid herpesvirus 1]
gi|254839988|gb|ACT83534.1| UL40 [Anatid herpesvirus 1]
Length = 355
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 65/304 (21%), Positives = 118/304 (38%), Gaps = 27/304 (8%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ +E+ DD A + LT E + F ++++ LV N + +
Sbjct: 74 NRWLESELVFLDDAAD---VDKLTPSELDFYRFIFTFLSAADDLVNCN-LGNLMGLFEEK 129
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
+ + Y + Q EAVHS + I L ++ Y + +++
Sbjct: 130 DIQHYYVEQESIEAVHSRVYSIIQLILFKNDATARAEYVKKAIRETSIRSKVKWI----- 184
Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
+ + E + + ++ ++ EG++F FA I + N V + I RDE
Sbjct: 185 -----SERVEECEDIPEKYILMILIEGLFFAASFAAIAYMRTRNIFVVTCQANTMISRDE 239
Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
++H + N+ + K + + EA LE + P ++ +
Sbjct: 240 TIHTKASCVIYNKHLQKYK----KPSTCRIYKLFSEAVKLECEFLRARAPSDSAIIDTEA 295
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYT----ENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
Y++F A+R IGL PLF + P +M+ ++ NFFE R T Y G+
Sbjct: 296 ICSYVRFNADRLLSDIGLAPLFDEPPPKHDFPLAFMA----TSQQTNFFERRNTTYA-GS 350
Query: 348 ELKW 351
L
Sbjct: 351 VLND 354
>gi|48696741|ref|YP_024565.1| ORF20 [Ostreid herpesvirus 1]
gi|81986458|sp|Q6R7K3|RIR2_OSHVF RecName: Full=Ribonucleoside-diphosphate reductase small chain
gi|41352405|gb|AAS00912.1| ORF20 [Ostreid herpesvirus 1]
Length = 579
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 71/347 (20%), Positives = 143/347 (41%), Gaps = 40/347 (11%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
P+ G + D + + D L P Y + ++ W TE+ + D+ W
Sbjct: 53 PLYGGATDHHKD----IVGKYDHALLKPAVYQQLRDFATKMESSSWQQTEIDAESDIPTW 108
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
+ ++++ER +++ L FFA ++LV + I + PEC+ ++ Q E VH
Sbjct: 109 EQ---ISENERDCVRKVLAFFAVGDTLVKDRIAI-FADEFPLPECKDFIDWQTVNEGVHQ 164
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSI-----TAKANWALQYTQTLSSPSFTTGTKDADQ 183
+ + +L D+ L ++ K +W + +
Sbjct: 165 RVYNNYLDALVKDKIYLADLVNAYKDPEFAPIKKKVDWLGKIISVENDSRG--------- 215
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
++ V V E + F FA +L RA M + ++I RDE+LH F +++
Sbjct: 216 ----EMVVGQVCTEAIMFAASFAILLKF-RAPYMRALVLGNEFIRRDETLHFRFYAELLR 270
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ + ++ +L EAT +E+ +A +P+G + Q+++ N+
Sbjct: 271 -------LMPDRPSDERIAELLTEATEIELEFAEYVVPEGVKYITKDRLIQHVKANTNQV 323
Query: 304 CHQIGLEPLF-----KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
C + + P++ +P +M+ + +++ NFFE + TEY
Sbjct: 324 CEMLDINPIYFDQKGNVLLSPLLYMNTLES-EQKINFFEGKATEYNT 369
>gi|240047145|ref|YP_002960533.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
conjunctivae HRC/581]
gi|239984717|emb|CAT04689.1| Ribonucleoside-diphosphate reductase beta chai [Mycoplasma
conjunctivae]
Length = 344
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/322 (16%), Positives = 111/322 (34%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++P+ +DL W+S L+ + +I R
Sbjct: 35 NWNVINDPKDLEVWN---RVVQNFWIPEKIPVSNDLDTWRS---LSPVWQRLITRTFTGL 88
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF VH+ ++ I ++L E E
Sbjct: 89 TLLDTIQATIGDVAQIQHSLTDHEQVIYANFAFMVGVHARSYGTIFSTLCTSEEIEEAHE 148
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ +A + + + V + G Y GF
Sbjct: 149 WVINNKKLQERAKALIPFYVSDD---------------PLKSKVAAAMMPGFLLYGGFYL 193
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L +K+ ++ + I+RD+ +H + + + +E + +L++
Sbjct: 194 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKYQRKVEKLSPEKQQEMKDFVFDLLYK 253
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE Y +E + + A ++ + A + +G + F E P +
Sbjct: 254 LIDLEKEYLYELYEEVDL---AEPAIRFSVYNAGKFLQNLGYDSPFSEEETRIEPEIFNQ 310
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 311 LSARADENHDFFSGNGSSYVMG 332
>gi|15674552|ref|NP_268726.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes M1 GAS]
gi|71910160|ref|YP_281710.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS5005]
gi|94987981|ref|YP_596082.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS9429]
gi|94989855|ref|YP_597955.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS10270]
gi|94991863|ref|YP_599962.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS2096]
gi|13621658|gb|AAK33447.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes M1 GAS]
gi|71852942|gb|AAZ50965.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
pyogenes MGAS5005]
gi|94541489|gb|ABF31538.1| ribonucleoside-diphosphate reductase beta chain [Streptococcus
pyogenes MGAS9429]
gi|94543363|gb|ABF33411.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
pyogenes MGAS10270]
gi|94545371|gb|ABF35418.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
pyogenes MGAS2096]
Length = 337
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 62/322 (19%), Positives = 108/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N L K W N W+P +VP+ +DL W+S L +D + +I R
Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF +H+ ++ I ++L E E
Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ +A + Y V + G Y GF
Sbjct: 142 WVVSTQSLQDRARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM ++ + I+RD+ +H + Q E + +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G E F E P +
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYESPFTDEETRVSPEVFAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325
>gi|21909837|ref|NP_664105.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS315]
gi|28896468|ref|NP_802818.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes SSI-1]
gi|50913718|ref|YP_059690.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes MGAS10394]
gi|21904023|gb|AAM78908.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes
MGAS315]
gi|28811719|dbj|BAC64651.1| putative ribonucleotide reductase 2 [Streptococcus pyogenes SSI-1]
gi|50902792|gb|AAT86507.1| Ribonucleoside-diphosphate reductase beta chain [Streptococcus
pyogenes MGAS10394]
Length = 337
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 61/322 (18%), Positives = 108/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N L K W N W+P +VP+ +DL W+S L +D + +I R
Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF +H+ ++ I ++L E E
Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ +A + Y V + G Y GF
Sbjct: 142 WVVSTQSLQDRARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM ++ + I+RD+ +H + Q E + +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYE 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G + F E P +
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYDSPFTDEETRVSPEVFAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325
>gi|207345015|gb|EDZ71971.1| YGR180Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 224
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/231 (19%), Positives = 92/231 (39%), Gaps = 24/231 (10%)
Query: 122 FEEAVHSHTFQYIITSLGLDEGEL--FNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
E ++S + ++ + D + F +P + K + ++
Sbjct: 1 MMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKTAFIERWI------------- 47
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
D + V + EG++ +A + L M G+A + I RD + +F
Sbjct: 48 SNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSC 107
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+ ++ TK + ++ EA +E Y ++P G++ S Y++F+
Sbjct: 108 LLFAHLR-------TKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFV 160
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
A+ G E + NPF +M +V + FFE +V++YQ+ +++
Sbjct: 161 ADGLLQGFGNEKYYNAV-NPFEFMEDVATA-GKTTFFEKKVSDYQKASDMS 209
>gi|22536601|ref|NP_687452.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
agalactiae 2603V/R]
gi|76788476|ref|YP_329136.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
agalactiae A909]
gi|76798641|ref|ZP_00780867.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae 18RS21]
gi|77406064|ref|ZP_00783140.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae H36B]
gi|77407720|ref|ZP_00784475.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae COH1]
gi|77411308|ref|ZP_00787657.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae CJB111]
gi|77414130|ref|ZP_00790296.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae 515]
gi|22533438|gb|AAM99324.1|AE014211_1 ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
agalactiae 2603V/R]
gi|76563533|gb|ABA46117.1| ribonucleoside-diphosphate reductase 2, beta subunit [Streptococcus
agalactiae A909]
gi|76586006|gb|EAO62538.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae 18RS21]
gi|77159800|gb|EAO70945.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae 515]
gi|77162644|gb|EAO73606.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae CJB111]
gi|77173719|gb|EAO76833.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae COH1]
gi|77175344|gb|EAO78137.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
agalactiae H36B]
gi|319744439|gb|EFV96796.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
agalactiae ATCC 13813]
Length = 336
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 57/322 (17%), Positives = 113/322 (35%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L K W N W+P ++P+ +DL W++ L D + +I R
Sbjct: 27 NWNKLNDDKDLEVWN---RVTQNFWLPEKIPVSNDLNSWRT---LDADWQQLITRTFTGL 80
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+S+ A +A +H + AF A+H+ ++ I ++L + E
Sbjct: 81 TLLDSVQATVGDIAQIKHSQTDHEQVIYANFAFMVAIHARSYGTIFSTLCTSQQIEEAHE 140
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ S+ A++ + + V + G Y GF
Sbjct: 141 WVVDTESLQARSRILIPFYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 185
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L K+ ++ + I+RD+ +H + Q + E + +L++
Sbjct: 186 PFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVAKLSVEKQAEMKTFVFDLLYQ 245
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY +E + A ++ + A + +G + F E P +
Sbjct: 246 LIDLEKAYLYELYDGFDL---AEDAIRFSIYNAGKFLQNLGYDSPFTEEETRISPEVFAQ 302
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 303 LSARADENHDFFSGNGSSYIMG 324
>gi|312162814|ref|YP_003933799.1| ribonucleotide reductase subunit 2 [Saimiriine herpesvirus 1]
gi|308096447|gb|ADO13787.1| ribonucleotide reductase subunit 2 [Saimiriine herpesvirus 1]
Length = 338
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 68/309 (22%), Positives = 114/309 (36%), Gaps = 34/309 (11%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D LT E + F ++++ LV N + +
Sbjct: 54 NRWLETELVFAGDEED---VAALTPGELGFYRFLFTFLSAADDLVTEN-LGNLAALFPQK 109
Query: 112 ECRQYLLRQAFEEAVHSHTFQY----IITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q EAVH+ + + + E P+I K W
Sbjct: 110 DILHYYVEQECIEAVHARVYGIVQLVLFANNEASRREYVAHTINHPAIRDKVEW------ 163
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + ++ ++ EG++F FA I L N + + I
Sbjct: 164 --------LEARVGECSSVAEKYILMILIEGVFFAASFAAIAFLRTNNLLRVTCQSNDLI 215
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N P K + + EA +EI + H P+ L
Sbjct: 216 SRDEAIHTTASCYIYNNYLTGYP----KPSTDRIHYLFREAVEIEIRFIHSQAPRDSHIL 271
Query: 288 NAPSCEQ---YMQFIANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKKEKNFFETRVTE 342
+A + Q Y+ F A+R I L PLF + FP ++ +K NFFE+R T
Sbjct: 272 DAAALRQIDNYVHFCADRLLKMIKLPPLFDAPAPDCSFP--LALMFTEKHTNFFESRSTA 329
Query: 343 YQQGAELKW 351
Y G +
Sbjct: 330 YA-GTVVND 337
>gi|311741268|ref|ZP_07715092.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303438|gb|EFQ79517.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 341
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 59/338 (17%), Positives = 118/338 (34%), Gaps = 44/338 (13%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +DL W+ +T +ER + R
Sbjct: 32 NWNRVSDDKDLEVWN---RLTTNFWLPEKVPLSNDLPAWQ---KMTPEERNLTMRVFTGL 85
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+ +++ A + + AF ++VH+ ++ + ++L + E +
Sbjct: 86 TTLDTVQATVGEICQIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLSSTKEIDEAYR 145
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ A+A L + + Y GF
Sbjct: 146 WAVNNDLLQARAKKVLAHYFGPDPLKRKVSSTLLSSL---------------LLYAGFYL 190
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L + A+ + I+RD+++H + + L KE + ++L E
Sbjct: 191 PLHFSVHATLTNTADMIRLILRDKAVHGYYSGYKYQRGLESTTPLRQKEMHDFTISLLEE 250
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMS 324
LE+ Y+ E +GL ++++ AN+ +G F E NP
Sbjct: 251 LYALELDYSGELYE--PLGL-MDDVAVFVRYNANKALMNLGYPDYFPPEETEVNP----- 302
Query: 325 EVI-----DLKKEKNFFETRVTEYQQG-----AELKWD 352
E++ + +FF + Y G ++ WD
Sbjct: 303 EILAALAPGADENHDFFSGSGSSYVIGTAEETSDDDWD 340
>gi|15829010|ref|NP_326370.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
pulmonis UAB CTIP]
gi|14089954|emb|CAC13712.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE BETA CHAIN (RIBONUCLEOTIDE
REDUCTASE) [Mycoplasma pulmonis]
Length = 341
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 58/322 (18%), Positives = 114/322 (35%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W C N W+P ++P+ +DL W+S L + +I R
Sbjct: 32 NWNKIDDEKDLEVWN---RVCQNFWLPEKIPVSNDLETWRS---LDPIWQKVITRTFTGL 85
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A H + AF A+H+ ++ I ++L E E
Sbjct: 86 TLLDTIQATIGDIAQLPHSLTDHEQVIYTNFAFMVAIHARSYGTIFSTLCSTEQINEAHE 145
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ +A + + V + G Y GF
Sbjct: 146 WVINTKSLQDRAKILIPFYTGKD---------------PLKSKVAAALMPGFLLYGGFYL 190
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L K+ ++ + I+RD+ +H + + + KE ++ +L++
Sbjct: 191 PFYLSSRMKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVEKLSLEKQKEMKEFVFDLLYK 250
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP--WMSE 325
LE Y +E + +GL A ++ + A + +G + F E S+
Sbjct: 251 LIDLEKKYLYELYEE--IGL-AEDAIKFSLYNAGKFLQNLGYDSPFTSEETKIDAEIFSQ 307
Query: 326 VID-LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 308 LSARADENHDFFSGNGSSYVMG 329
>gi|269865675|ref|XP_002652006.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063328|gb|EED42049.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 183
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 6/157 (3%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ + P++Y WE Y + W EV M D + + LT +E+
Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
IK L FFA+S+ +V N+V + E + + Q E +HS + +I +L D
Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAIENIHSEMYSKLIETLIRD 142
Query: 142 EGE---LFNMYREVPSITAKANWALQYTQTLSSPSFT 175
+ E LFN +PSI KA WA ++ + +S
Sbjct: 143 KEEQTYLFNAIENIPSIRKKALWAQKWIASDTSFDTR 179
>gi|262184725|ref|ZP_06044146.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
aurimucosum ATCC 700975]
Length = 306
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 57/324 (17%), Positives = 114/324 (35%), Gaps = 41/324 (12%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
E + N W+P +VP+ +DL W+ +T +ER + R + +++ A +
Sbjct: 8 EVWNRLTANFWLPEKVPLSNDLPAWQ---RMTPEERNLTMRVFTGLTTLDTVQATVGEIC 64
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
+ AF ++VH+ ++ + ++L + E + + A+A
Sbjct: 65 QIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLSSTKEIDEAYRWAVNNDLLQARAKK 124
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
L + + Y GF L + A
Sbjct: 125 VLAHYFGPDPLKRKVSSTLLSSL---------------LLYAGFYLPLHFSVHATLTNTA 169
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I+RD+++H + + L KE + ++L E LE+ Y+ E
Sbjct: 170 DMIRLILRDKAVHGYYSGYKYQRGLESTTPLRQKEMHDFTISLLEELYALELDYSGELYE 229
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVI-----DLKKEK 333
+GL ++++ AN+ +G F E NP E++ +
Sbjct: 230 --PLGL-MDDVAVFVRYNANKALMNLGYPDYFPPEETEVNP-----EILAALAPGADENH 281
Query: 334 NFFETRVTEYQQG-----AELKWD 352
+FF + Y G ++ WD
Sbjct: 282 DFFSGSGSSYVIGTAEETSDDDWD 305
>gi|116617385|ref|YP_817756.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116096232|gb|ABJ61383.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
Length = 325
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 112/303 (36%), Gaps = 26/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ +++ ER + G + ++L + + + +
Sbjct: 26 WEKLTQQFWLDTRIPISNDLRTWR--GNMSEQERQTMNLVFGGLTTLDTLQSQDGMAQLK 83
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWAL 163
+N + L F E+VH+ ++ I +L + ++F + KAN
Sbjct: 84 LDATNQKEEAVLNNIQFMESVHAKSYSSIFETLNEKVEIEKIFEWADSNEFLQYKANRIN 143
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
S+ V E FY+GF L NKM+ +AE
Sbjct: 144 DIYHNGSALQKKI---------------ASVFLETFLFYSGFYTPLYFLGHNKMLNVAEI 188
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + E Q +L+E E Y HE
Sbjct: 189 IKLIIRDESVHGTYIGYKFQIGFNKISAEERTELQSWMYDLLYELYENEEKYTHELYDD- 247
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
+G ++++ AN+ +G EP+F NP M+ + +FF
Sbjct: 248 -LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGISTSTANHDFFSGVG 304
Query: 341 TEY 343
Y
Sbjct: 305 NGY 307
>gi|184156148|ref|YP_001844488.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
fermentum IFO 3956]
gi|227515317|ref|ZP_03945366.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
14931]
gi|260662379|ref|ZP_05863274.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
fermentum 28-3-CHN]
gi|183227492|dbj|BAG28008.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
fermentum IFO 3956]
gi|227086331|gb|EEI21643.1| ribonucleoside-diphosphate reductase [Lactobacillus fermentum ATCC
14931]
gi|260553070|gb|EEX26013.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
fermentum 28-3-CHN]
gi|299783625|gb|ADJ41623.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
fermentum CECT 5716]
Length = 316
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 56/308 (18%), Positives = 118/308 (38%), Gaps = 26/308 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ A W+ T VP+ +D W++ LTD E+ +I + +G A ++L + V +
Sbjct: 20 WDKATAQFWLDTRVPVSNDRGDWRT---LTDSEKGVINKVVGGLALLDTLQSEEGVNVMR 76
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
+ + E++H+ ++ I+++L ++ + + + + + ++
Sbjct: 77 EDARTRKEVGVINDFLMMESIHAKSYGTILSTL--NDQKTIDDTFHWMNNDPRMQYKVRR 134
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
+ K V V EG+ +Y+ F L NK+ ++E +
Sbjct: 135 INEIYQNGNNLEKK-----------VASVFLEGILYYSNFFTPLWYRGNNKLANLSEVIK 183
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGF 284
++RDES+H + Q E F+ +L + E A+ P
Sbjct: 184 LVIRDESVHGTYLGYKFQQAFAELTPDEQTRFRAWMDDLLADLLENEFAFTEVVYAPIQM 243
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFETRV 340
V +Q++++ AN+ + +G +F + NP M+ + +FF
Sbjct: 244 V----EDVKQFVRYNANKAMNNMGFAAIFNHAAIEDINPIV-MNGISTETANHDFFSQVG 298
Query: 341 TEYQQGAE 348
Y G
Sbjct: 299 AGYLMGNA 306
>gi|311993225|ref|YP_004010091.1| aerobic NDP reductase, small subunit [Enterobacteria phage CC31]
gi|284178063|gb|ADB81729.1| aerobic NDP reductase, small subunit [Enterobacteria phage CC31]
Length = 379
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 57/328 (17%), Positives = 114/328 (34%), Gaps = 38/328 (11%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
++ E + W P EV + D A ++ L ++ + NL + + +S+
Sbjct: 20 RHRTFEELIEKQLSFFWRPEEVNLMTDRAQFE---KLPVGQQNVFLDNLKYQSLLDSIQG 76
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+ +S+P + F E +HS ++ +I+ +L D ++F+ +I
Sbjct: 77 RAPAAVLSALISDPSLDTWNQTWTFSETIHSRSYTHIMRNLLNDPAKVFDEIVLDEAIMK 136
Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFL---------------------------QDLF 190
+A Y + + E
Sbjct: 137 RAETIGHYYDDVILKTRLWENAKERYEESLGSCQQNDIEMYEGYVIDAKRELMKALYLCL 196
Query: 191 VFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
E + FY FA + + M G ++ ++I RDE LHL +I Q+++
Sbjct: 197 HVINGLEAIRFYVSFACTFNFHKNMEIMEGNSKIMKFIARDEQLHLKGTQYIIRQLQLGT 256
Query: 250 PHLWT----KEFQQKSRTMLHEATLLEIAYAHE-TMPKGFVGLNAPSCEQYMQFIANRRC 304
+E +Q++ + E E +A G GL+ ++ ++ R
Sbjct: 257 DGEEWVQIARECEQEAVDIFMEINRQEKEWAVHLWRDGGVPGLSVKILHDFIDYLTVSRM 316
Query: 305 HQIGLE-PLFKY-TENPFPWMSEVIDLK 330
GL P+ +P PW+ E ++
Sbjct: 317 RSCGLPCPITDAPVRHPIPWIREYLNSD 344
>gi|308490921|ref|XP_003107652.1| hypothetical protein CRE_13354 [Caenorhabditis remanei]
gi|308250521|gb|EFO94473.1| hypothetical protein CRE_13354 [Caenorhabditis remanei]
Length = 147
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
N + + Y RDE LH +F + + ++ + Q++ ++ +A +E
Sbjct: 7 NNTISSVFRLINYFFRDEGLHRDFACLLYSMLQNKL-------TQERIFEIIKDAVCIEQ 59
Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEK 333
+ E +P +G+N QY++F+A+ ++G + L+ +NPF +M E I + +
Sbjct: 60 EFLTEALPVDMIGMNCRLMSQYIEFVADHLLAELGCDKLYNV-KNPFDFM-ENISIDGKT 117
Query: 334 NFFETRVTEYQQGAELK 350
NFFE RV+EYQ+ +
Sbjct: 118 NFFEKRVSEYQRPGVMS 134
>gi|302190764|ref|ZP_07267018.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
iners AB-1]
gi|309804064|ref|ZP_07698145.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LactinV 11V1-d]
gi|309804878|ref|ZP_07698940.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LactinV 09V1-c]
gi|309807870|ref|ZP_07701802.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LactinV 01V1-a]
gi|309809732|ref|ZP_07703586.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners SPIN 2503V10-D]
gi|312871305|ref|ZP_07731403.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LEAF 3008A-a]
gi|312872703|ref|ZP_07732768.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LEAF 2062A-h1]
gi|312873302|ref|ZP_07733357.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LEAF 2052A-d]
gi|312874885|ref|ZP_07734904.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LEAF 2053A-b]
gi|315654122|ref|ZP_07907038.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
iners ATCC 55195]
gi|325912248|ref|ZP_08174645.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners UPII 143-D]
gi|325913678|ref|ZP_08176040.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners UPII 60-B]
gi|329919824|ref|ZP_08276775.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners SPIN 1401G]
gi|308163832|gb|EFO66098.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LactinV 11V1-d]
gi|308165817|gb|EFO68038.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LactinV 09V1-c]
gi|308168972|gb|EFO71058.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LactinV 01V1-a]
gi|308169911|gb|EFO71950.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners SPIN 2503V10-D]
gi|311089630|gb|EFQ48055.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LEAF 2053A-b]
gi|311091182|gb|EFQ49571.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LEAF 2052A-d]
gi|311091745|gb|EFQ50124.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LEAF 2062A-h1]
gi|311093319|gb|EFQ51665.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LEAF 3008A-a]
gi|315488818|gb|EFU78464.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
iners ATCC 55195]
gi|325475907|gb|EGC79076.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners UPII 143-D]
gi|325477037|gb|EGC80187.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners UPII 60-B]
gi|328937171|gb|EGG33599.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners SPIN 1401G]
Length = 337
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 60/322 (18%), Positives = 114/322 (35%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P ++P+ +DL W S L+ D + +I R
Sbjct: 28 NWNKIDDDKDLEVWN---RVTQNFWLPEKIPVSNDLPSWNS---LSKDWQQLITRTFTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A+ +A ++ + AF AVH+ ++ I ++L + E N
Sbjct: 82 TLLDTIQASIGDVAQIKNAQTDHEQAIYANFAFMVAVHARSYGTIFSTLCNSDQIDEAHN 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
++ A+A + Y V + G Y GF
Sbjct: 142 WVINNEALQARAKALIPYYTGND---------------PLKSKVAAAMMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L NK+ A+ + I+RD+ +H + Q + E + +L++
Sbjct: 187 PFYLSSRNKLPNTADIIRLILRDKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFVFALLYK 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G + F E P +
Sbjct: 247 LIDLEKAYLRELYKGFDI---AEDAIRFSIYNAGKFLQNLGYDSPFTEAETHIAPEVLAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325
>gi|306827912|ref|ZP_07461179.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes ATCC 10782]
gi|304429831|gb|EFM32873.1| ribonucleotide-diphosphate reductase subunit beta [Streptococcus
pyogenes ATCC 10782]
Length = 337
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 60/322 (18%), Positives = 108/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N L K W N W+P +VP+ +DL W+S L +D + +I R
Sbjct: 28 NWNYLNDDKDLEVWN---RVTQNFWLPEKVPVSNDLNSWRS---LGEDWQQLITRTYTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF +H+ ++ I ++L E E
Sbjct: 82 TLLDTVQATVGDVAQIQHSQTDHEQVIYTNFAFMVGIHARSYGTIFSTLCSSEQIEEAHE 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ +A + Y V + G Y GF
Sbjct: 142 WVVSTQSLQDRARVLIPYYTGDD---------------PLKSKVAAAMMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L KM ++ + I+RD+ +H + Q + + +L+E
Sbjct: 187 PFYLSARGKMPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAKMKAFVFDLLYE 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G + F E P +
Sbjct: 247 LIDLEKAYLRELYAGFDL---AEDAIRFSLYNAGKFLQNLGYDSPFTDEETRVSPEVFAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 304 LSARADENHDFFSGNGSSYVMG 325
>gi|227431268|ref|ZP_03913322.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|227353030|gb|EEJ43202.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
Length = 327
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 112/303 (36%), Gaps = 26/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ +++ ER + G + ++L + + + +
Sbjct: 28 WEKLTQQFWLDTRIPISNDLRTWR--GNMSEQERQTMNLVFGGLTTLDTLQSQDGMAQLK 85
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWAL 163
+N + L F E+VH+ ++ I +L + ++F + KAN
Sbjct: 86 LDATNQKEEAVLNNIQFMESVHAKSYSSIFETLNEKVEIEKIFEWADSNEFLQYKANRIN 145
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
S+ V E FY+GF L NKM+ +AE
Sbjct: 146 DIYHNGSALQKKI---------------ASVFLETFLFYSGFYTPLYFLGHNKMLNVAEI 190
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + E Q +L+E E Y HE
Sbjct: 191 IKLIIRDESVHGTYIGYKFQIGFNKISAEERTELQSWMYDLLYELYENEEKYTHELYDD- 249
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
+G ++++ AN+ +G EP+F NP M+ + +FF
Sbjct: 250 -LGWT-EQVLTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGISTSTANHDFFSGVG 306
Query: 341 TEY 343
Y
Sbjct: 307 NGY 309
>gi|308178758|ref|YP_003918164.1| ribonucleoside-diphosphate reductase subunit beta [Arthrobacter
arilaitensis Re117]
gi|307746221|emb|CBT77193.1| ribonucleoside-diphosphate reductase beta chain [Arthrobacter
arilaitensis Re117]
Length = 341
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 59/354 (16%), Positives = 121/354 (34%), Gaps = 49/354 (13%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
R+ + + + N+++ K W N W+P +VP+ +DL W+
Sbjct: 23 NPAARI----RPI-----NWNRVVDDKDLEVWN---RLTANFWLPEKVPLSNDLPAWE-- 68
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
LT +ER + R +++ A + + AF +AVH+ ++
Sbjct: 69 -KLTQEERTLTMRVFTGLTMLDTVQATVGEICQIQDSQTEHEEAVYTNIAFMQAVHARSY 127
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
+ ++L E+ + YR + + V
Sbjct: 128 SSVFSTLTSTP-EIDSAYRWAIANDMLQERCKKVLTHYYGDD------------PLKRKV 174
Query: 192 FYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
+ + Y GF L + A+ + I+RD+++H + +
Sbjct: 175 SSTLLSSLLLYAGFYLPLHFSVHATLTNTADMIRLILRDKAVHGYYSGYKYQRGLETQSP 234
Query: 252 LWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+ ++ + +L E LE+ Y+ E +GL ++++ AN+ +G
Sbjct: 235 ATQENMREFTYALLEELYELELQYSGELYE--PLGL-MDDVAVFVRYNANKALMNLGYPA 291
Query: 312 LFKYTE---NPFPWMSEVI-----DLKKEKNFFETRVTEYQQG-----AELKWD 352
F E NP E++ + +FF + Y G ++ WD
Sbjct: 292 RFTPEETNVNP-----EILAALAPGADENHDFFSGSGSSYIIGKAEDTSDDDWD 340
>gi|194246584|ref|YP_002004223.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Phytoplasma mali]
gi|193806941|emb|CAP18373.1| Ribonucleoside-diphosphate reductase, beta chain [Candidatus
Phytoplasma mali]
Length = 348
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 58/327 (17%), Positives = 118/327 (36%), Gaps = 18/327 (5%)
Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
++ NQ + + Y + W P ++ +Q DL WK + + L F
Sbjct: 11 ANWNQ---FEDPYTHFFYEQNLSQFWRPEDISLQGDLQTWKDLSKFEKNVYSKNLLILTF 67
Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELF 146
+ + I+ + ++ + + A E AVH+ ++ I +L + +LF
Sbjct: 68 LDTYQGDSGMFIISSSFKKEEHQKKATLNFMGAMENAVHAKSYSNIFMTLLNSKEIDDLF 127
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDAD------QEFLQDLFVFYVVFEGMW 200
+ + + L F D + +++ V V E
Sbjct: 128 VWGGNQKYLQNIIGKIIDVYEDLEKKIFQRKYNDENITDLIFKKYQWKAMVTSVFLETWL 187
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
FY+GF L K++ E I+RDES+H + + I L E +
Sbjct: 188 FYSGFYYPLFFYSQGKLMQSGEIINLIIRDESVHGVYIARLALNIYNSFDKLIKDELSKW 247
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NP 319
+L +IA + ++ +++++ AN+ +G P F+ E NP
Sbjct: 248 MYDLLKYFYQEQIALVKSVYNEHYL---INDVNKFVRYNANKALMNLGFNPYFEKEEVNP 304
Query: 320 FPWMSEVIDLKKEK-NFFETRVTEYQQ 345
+ ++ + + + F + YQ+
Sbjct: 305 V--ILNGLNTETKTMDNFSMKGNGYQK 329
>gi|323342959|ref|ZP_08083190.1| ribonucleotide-diphosphate reductase subunit beta [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463023|gb|EFY08218.1| ribonucleotide-diphosphate reductase subunit beta [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 358
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 60/316 (18%), Positives = 123/316 (38%), Gaps = 23/316 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y + W P ++ +Q DL LW S L++D +L RNL ++ + + +
Sbjct: 31 FYEQNLSQFWRPEDISLQPDLNLWAS---LSEDVKLAYGRNLLVLTFLDTYQGDIGMPVV 87
Query: 105 YRHLSN--PECRQYLLRQA-FEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKA 159
R + + + + L A E AVH+ ++ I + +E +L+ + ++
Sbjct: 88 SRSIDHKYHQRKSVLNFMAAMENAVHAKSYSNIFMTYMKNEEIDDLYRWGEQNKNMQNIL 147
Query: 160 NWALQYTQTLSSPSFTTGTKD-----ADQEF---LQDLFVFYVVFEGMWFYTGFAQILSL 211
+ Y + L ++ D D EF V V E FY+GF L
Sbjct: 148 ALIIGYYENLDRLTYRKQYADLGEPVDDFEFDVAQWKAMVASVFLESCLFYSGFYYPLYF 207
Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
K++ E I+RDES+H + ++ ++ + + T L
Sbjct: 208 YGQGKLMQAGEIINLILRDESIHGLYIGNLAMELYRKFDAETQASLYEWLTTYLDAIYEE 267
Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK 330
E+ + + + ++++ AN+ +G + ++Y E NP + ++ +
Sbjct: 268 EVELIEAIYDPVEL---SHDVKIFVRYNANKAMMNLGFDAYYEYEEVNPV--VLNGLNTE 322
Query: 331 KEK-NFFETRVTEYQQ 345
+ + F + YQ+
Sbjct: 323 TKTMDNFSMKGNGYQK 338
>gi|203288309|ref|YP_002223359.1| ribonucleoside-diphosphate reductase, beta subunit [Borrelia
recurrentis A1]
gi|203288575|ref|YP_002223482.1| ribonucleoside-diphosphate reductase beta subunit [Borrelia
duttonii Ly]
gi|201084282|gb|ACH93870.1| ribonucleoside-diphosphate reductase beta subunit [Borrelia
duttonii Ly]
gi|201085529|gb|ACH95102.1| ribonucleoside-diphosphate reductase, beta subunit [Borrelia
recurrentis A1]
Length = 321
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 65/325 (20%), Positives = 123/325 (37%), Gaps = 26/325 (8%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+ N+L Y + W+ E+P+ DD +W + L+ DER + ++
Sbjct: 5 REAINWNRLNN-GYTKM--FWDQNIRQFWVDEEIPISDDKLVWNT---LSVDERDVYEKV 58
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL--GLDEG 143
LG ++ + + I + N + + L E +H+ ++ I +SL
Sbjct: 59 LGGLTLLDTEQGSVGMPRIALAIDNLDYKPILGFMGAMEHMHAKSYSSIFSSLSNIDRID 118
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
+F+ + + K L + D+ L V E FY+
Sbjct: 119 YIFDWVKTYRNYQEKLELILGKYNNI-----------HDRMSLYQALCTSVFLETFLFYS 167
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L L KMV E I+RDES+H F + + + + ++
Sbjct: 168 GFFYPLYLAGQGKMVNSGEIINLILRDESVHGVFVGLLAQEEFDKMTMKEQELAYKEMLL 227
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
+L + LE Y E VGL + + ++++ A++ +G + F + NP
Sbjct: 228 ILEKLYSLEREYTKELYSC--VGLESA-VDVFVRYNADKALMNLGFDTKFNIKDTDVNPL 284
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQ 345
++ + K +FF T+ Y +
Sbjct: 285 V-LNGLRTDTKTHDFFSTKGNGYIK 308
>gi|325171172|ref|YP_004251147.1| ribonucleoside diphosphate reductase, beta chain [Vibrio phage
ICP1]
gi|323512567|gb|ADX88022.1| ribonucleoside diphosphate reductase, beta chain [Vibrio phage
ICP1]
gi|323513935|gb|ADX89384.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
ICP1_2001_A]
gi|323514163|gb|ADX89611.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
ICP1_2004_A]
Length = 450
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 64/302 (21%), Positives = 130/302 (43%), Gaps = 13/302 (4%)
Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
Y ++ + + W E+ + D ++S + T D ++ + L + ++SL +
Sbjct: 37 YPELFKLFKLMKSLDWSEDEIRLHQDRMDFESVDQSTYD---VMIKTLSWQYEADSLASR 93
Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
+IV ++N + Q +LR + EA+HS T+ II + ++F +T +
Sbjct: 94 SIVTLFAPFITNSDLSQMMLRWSDNEALHSTTYSEIIRQCLKNPDDIFEEITSNKDVTER 153
Query: 159 ANWALQYTQTLS------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ + L + S + ++ +E + V E M F FA +L
Sbjct: 154 SYKIAEAFSKLKTLGARYTLSKESVSEKEIREVILKTIVSLYCLEQMEFMASFACTFALA 213
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-QQKSRTMLHEATLL 271
+G+A Q IM DE++H +IN + + L T E + + ++
Sbjct: 214 EREIFLGVASLVQKIMIDETIHTRMDEAIINILLGDEVWLKTFEDIKPDIKEIVDSVYKQ 273
Query: 272 EIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID 328
E++++ +G VGLN ++++Q+ + ++G+E F+ NP PWM +D
Sbjct: 274 ELSWSEYIFSEGRSIVGLNTSLLKEWVQYKSQVVYKKLGIEQPFEDVINNPLPWMENWLD 333
Query: 329 LK 330
+
Sbjct: 334 ID 335
>gi|197294249|ref|YP_001798790.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Phytoplasma australiense]
gi|171853576|emb|CAM11447.1| Ribonucleotide reductase, beta subunit [Candidatus Phytoplasma
australiense]
Length = 344
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 63/329 (19%), Positives = 125/329 (37%), Gaps = 21/329 (6%)
Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
++ NQL +Y Y + W P ++ +Q DLA W L+D+E+ RNL
Sbjct: 12 ANWNQLED-EYTHF--FYEQNLSQFWRPEDISLQGDLAAWNH---LSDEEKTTYTRNLLV 65
Query: 89 FASSESLVAN--NIVLAIYRHLSNPECRQYLLRQ-AFEEAVHSHTFQYIITSLGLDE--G 143
++ + V+A + + + L A E AVH+ ++ I TS +E
Sbjct: 66 LTFLDTYQGDLGIPVIANSMDENKHQKKATLNFMGAMENAVHAKSYSNIFTSYLSNEDIN 125
Query: 144 ELFNMYREVPSITAKANWALQYTQTLS------SPSFTTGTKDADQEFLQDLFVFYVVFE 197
+LF + ++ + + L + ++ Q+ V E
Sbjct: 126 QLFVWGEKQVNLQNIMKIIFRVYEDLEYNIYLKKYQLSEFSELQYQKNQWKAMAISVFLE 185
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
FY+GF L K++ E I+RDES+H + + ++ KE
Sbjct: 186 TWLFYSGFYYPLYFYGQGKLMQAGEIINLIIRDESIHGVYIGRLATELYHLFDDDTKKEL 245
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + ++ E K + ++++++ AN+ +G + F E
Sbjct: 246 KTWLDATMKTLYKEQMELVKEVYSK--LSYLEEDVQKFVRYNANKALMNLGFDAFFP-EE 302
Query: 318 NPFPWMSEVIDLKKEK-NFFETRVTEYQQ 345
N P + ++ + + + F + YQ+
Sbjct: 303 NVNPVVLNGLNTETKTMDNFSMKGNGYQK 331
>gi|259500785|ref|ZP_05743687.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM
13335]
gi|259167479|gb|EEW51974.1| ribonucleoside-diphosphate reductase 2 [Lactobacillus iners DSM
13335]
Length = 339
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 60/322 (18%), Positives = 114/322 (35%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P ++P+ +DL W S L+ D + +I R
Sbjct: 30 NWNKIDDDKDLEVWN---RVTQNFWLPEKIPVSNDLPSWNS---LSKDWQQLITRTFTGL 83
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A+ +A ++ + AF AVH+ ++ I ++L + E N
Sbjct: 84 TLLDTIQASIGDVAQIKNAQTDHEQAIYANFAFMVAVHARSYGTIFSTLCNSDQIDEAHN 143
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
++ A+A + Y V + G Y GF
Sbjct: 144 WVINNEALQARAKALIPYYTGND---------------PLKSKVAAAMMPGFLLYGGFYL 188
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L NK+ A+ + I+RD+ +H + Q + E + +L++
Sbjct: 189 PFYLSSRNKLPNTADIIRLILRDKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFVFALLYK 248
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE AY E + A ++ + A + +G + F E P +
Sbjct: 249 LIDLEKAYLRELYKGFDI---AEDAIRFSIYNAGKFLQNLGYDSPFTEAETHIAPEVLAQ 305
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 306 LSARADENHDFFSGNGSSYVMG 327
>gi|323512793|gb|ADX88247.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
ICP1_2006_D]
gi|323513021|gb|ADX88474.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
ICP1_2006_C]
gi|323513246|gb|ADX88698.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
ICP1_2006_B]
gi|323513473|gb|ADX88924.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
ICP1_2006_A]
gi|323513704|gb|ADX89154.1| ribonucleoside triphosphate reductase, beta chain [Vibrio phage
ICP1_2005_A]
Length = 450
Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats.
Identities = 64/302 (21%), Positives = 130/302 (43%), Gaps = 13/302 (4%)
Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
Y ++ + + W E+ + D ++S + T D ++ + L + ++SL +
Sbjct: 37 YPELFKLFKLMKSLDWSEDEIRLHQDRMDFESVDQSTYD---VMIKTLSWQYEADSLASR 93
Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
+IV ++N + Q +LR + EA+HS T+ II + ++F +T +
Sbjct: 94 SIVTLFAPFITNSDLSQMMLRWSDNEALHSTTYSEIIRQCLKNPDDIFEEITSNKDVTER 153
Query: 159 ANWALQYTQTLS------SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ + L + S + ++ +E + V E M F FA +L
Sbjct: 154 SYKIAEAFSKLKTLGARYTLSKESVSEKEIREVILKTIVSLYCLEQMEFMASFACTFALA 213
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF-QQKSRTMLHEATLL 271
+G+A Q IM DE++H +IN + + L T E + + ++
Sbjct: 214 EREIFLGVASLVQKIMIDETIHTRMDEAIINILLGDEVWLKTFEDIKPDIKEIVDSVYKQ 273
Query: 272 EIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID 328
E++++ +G VGLN ++++Q+ + ++G+E F+ NP PWM +D
Sbjct: 274 ELSWSEYIFSEGRSIVGLNTSLLKEWVQYKSQVVYKKLGIEQPFEDVINNPLPWMENWLD 333
Query: 329 LK 330
+
Sbjct: 334 ID 335
>gi|326692188|ref|ZP_08229193.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
argentinum KCTC 3773]
Length = 325
Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 111/303 (36%), Gaps = 26/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+ ++ E+ + G + ++L + + + +
Sbjct: 27 WEKLTQQFWLDTRIPISNDLRHWR--GNMSPQEQKTMNLVFGGLTTLDTLQSQDGLAQLK 84
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWAL 163
N + L F E++H+ ++ I +L +F+ + KAN
Sbjct: 85 FDSLNQKEEAVLNNIQFMESIHAKSYSSIFETLNEKSEIEAIFDWADNNEFLQYKANRIN 144
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
QT +S V E FY+GF L N+M+ +AE
Sbjct: 145 DIYQTGTSLQKKI---------------ASVFLETFLFYSGFYTPLYFLGHNRMLNVAEI 189
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + E Q +L++ E Y HE
Sbjct: 190 IKLIIRDESVHGTYIGYKFQIGFNQLSEDEQAELQAWMYDLLYDLYENEEKYTHELYDD- 248
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
+G ++++ AN+ +G EP+F NP M+ + +FF
Sbjct: 249 -LGW-YEQVMTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGLSTSTANHDFFSGVG 305
Query: 341 TEY 343
Y
Sbjct: 306 NGY 308
>gi|12045084|ref|NP_072895.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
genitalium G37]
gi|255660230|ref|ZP_05405639.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
genitalium G37]
gi|1350602|sp|P47471|RIR2_MYCGE RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|3844832|gb|AAC71450.1| ribonucleoside-diphosphate reductase, beta chain [Mycoplasma
genitalium G37]
gi|166078981|gb|ABY79599.1| ribonucleoside-diphosphate reductase, beta chain [synthetic
Mycoplasma genitalium JCVI-1.0]
Length = 340
Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats.
Identities = 51/316 (16%), Positives = 103/316 (32%), Gaps = 28/316 (8%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
E + N W+P ++P+ +D+ WK L+ D + +I + +++ A +
Sbjct: 42 EVWNRIVQNFWLPEKIPVSNDIPSWK---KLSKDWQDLITKTFTGLTLLDTIQATIGDIC 98
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANW 161
H + AF VH+ ++ I ++L E S+ +A
Sbjct: 99 QIDHALTDHEQVIYANFAFMVGVHARSYGTIFSTLCTSEQINAAHEWVVNTESLQKRAKA 158
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ Y V + G Y GF L ++ +
Sbjct: 159 LIPYYTGND---------------PLKSKVAAALMPGFLLYGGFYLPFYLSSRKQLPNTS 203
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I+RD+ +H + + + P KE + +++ LE Y E
Sbjct: 204 DIIRLILRDKVIHNYYSGYKYQRKLEKLPLAKQKEMKAFVFELMYRLIELEKDYLKELYE 263
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFET 338
G+ + + + + A + +G + F E + + +FF
Sbjct: 264 G--FGIVDDAIK-FSVYNAGKFLQNLGYDSPFTAAETRIKPEIFAQLSARADENHDFFSG 320
Query: 339 RVTEYQQGA--ELKWD 352
+ Y G E D
Sbjct: 321 NGSSYVMGVSEETNDD 336
>gi|326536370|ref|YP_004300811.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133]
gi|299483451|gb|ADJ19545.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage 133]
Length = 382
Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats.
Identities = 61/342 (17%), Positives = 120/342 (35%), Gaps = 20/342 (5%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+ I + N+D + V + +K+ E + W P EV + D A
Sbjct: 1 MQTIFN-QNEFNIDQPMFFGDDTGVARYEIVKHEKFEELTTKQLSFFWRPEEVNLTTDKA 59
Query: 67 LWKSKNGLTDDE-RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
+ + + NLG+ +S+ + + S+ +++ F E
Sbjct: 60 QFDKLWETNRGHLQTIFTDNLGYQILMDSVQGRAPAIVLASICSDVALETWIMTWTFSET 119
Query: 126 VHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD----- 180
+HS ++ +II +L D ++F+ I A+A + L
Sbjct: 120 IHSRSYTHIIRNLYSDPSKIFDGVLANKEIMARATSICERYDLLHKLIILYQADKIRGVA 179
Query: 181 ------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVGIAEQYQYIMRDESL 233
++ L E + FY F + K M G + Q+I RDE+L
Sbjct: 180 TPGQLREVKKALYLCLHAINALEAIRFYVSFISTWNFFENMKIMEGNMKIMQFIARDENL 239
Query: 234 HLNFGIDVINQIKIENPHLWTKE----FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLN 288
H ++ Q+ +E ++++ M E E A+A G GL
Sbjct: 240 HHQGTRYILQQMNKGIDGTEWREIALDCKEEAEAMFLEVRAQERAWATYVYRNGHPDGLT 299
Query: 289 APSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDL 329
+++ + +GL P+ + +P PW+++ +
Sbjct: 300 TDLVHEFIDYQLVPAMKNVGLNCPIERPKRHPLPWVNKYLMA 341
>gi|257069911|ref|YP_003156166.1| ribonucleotide-diphosphate reductase subunit beta [Brachybacterium
faecium DSM 4810]
gi|256560729|gb|ACU86576.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Brachybacterium faecium DSM 4810]
Length = 341
Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats.
Identities = 51/322 (15%), Positives = 108/322 (33%), Gaps = 37/322 (11%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
E + N W+P +VP+ +DL W+ L + +R + R +++ A +
Sbjct: 43 EVWNRLTANFWLPEKVPLSNDLQAWQ---RLPEQDRTLTMRVFTGLTMLDTVQATVGEIC 99
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
+ AF ++VH+ ++ + ++L + + +
Sbjct: 100 QIQDARTEHEEAVYTNIAFMQSVHARSYSSVFSTLTSTPEIDSAYRWAVNNDLLQERCKK 159
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
LQ+ + Y GF L + A
Sbjct: 160 VLQHYYGADPLKRKVSSTLLSSL---------------LLYAGFYLPLHFSVRATLTNTA 204
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I+RD+++H + + +E ++ + +L E LE+ Y+ E
Sbjct: 205 DMIRLILRDKAVHGYYSGYKYQRGLAAATADKQEEMREFTVALLEELYALELEYSGELYE 264
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI------DLKKEKNF 335
+GL ++++ AN+ +G F+ E +S I + +F
Sbjct: 265 --PLGL-MDDVAGFVRYNANKALMNLGYPARFEAHETV---VSPEILAALAPGSDENHDF 318
Query: 336 FETRVTEYQQG-----AELKWD 352
F + Y G ++ WD
Sbjct: 319 FSGSGSSYVIGKAEHTSDDDWD 340
>gi|82793227|ref|XP_727957.1| ribonucleotide reductase [Plasmodium yoelii yoelii str. 17XNL]
gi|23484058|gb|EAA19522.1| ribonucleotide reductase, putative [Plasmodium yoelii yoelii]
Length = 373
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/314 (15%), Positives = 104/314 (33%), Gaps = 34/314 (10%)
Query: 16 RVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLT 75
+ +D+ +L + P+KY W Y + W + D K L
Sbjct: 14 KAQYNDE-ILKENQFRWVMFPIKYKTFWNYYKEIESLFWTAEDHNFDKD------KPFLN 66
Query: 76 DDERLMIKRNLGFFASSES------LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
++ + + L F I + + PE R + Q E +H+
Sbjct: 67 SMDKTTLSKLLELFCFYSLKDLHLRDEQAIITSKLLDIIQIPEGRAFYGFQMCMENIHNE 126
Query: 130 TFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
+ I S + + L+Y ++ +A+ F L
Sbjct: 127 VYACIFESY----------SLDSKQKKEIIDKVLKYESVFKKQNWLYNEFEANIPFYNKL 176
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY-IMRDESLHLNFGIDVINQIKIE 248
+ Y+ + F GF+ + S + N ++ I RDE L +F + N + +
Sbjct: 177 ILLYIS--KVLFNGGFSILASYCKENNILSSFTGVHAKIQRDEYLQGDFSVMCCNHLNNK 234
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ + A LE + + + F+ + +Q++Q++A+ +
Sbjct: 235 LRY-------ENVLNYFKAAVELEYNFCVDMLDFDFLKITKDQVKQFLQYLADTMLLNLK 287
Query: 309 LEPLFKYTENPFPW 322
+ ++ PF W
Sbjct: 288 YPKHYN-SKYPFAW 300
>gi|144575330|gb|AAZ53597.2| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
hyopneumoniae 7448]
Length = 314
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 52/322 (16%), Positives = 113/322 (35%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++P+ +DL W++ L+ + ++ R
Sbjct: 5 NWNIINDPKDLEVWT---RIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 58
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF VH+ ++ I ++L E E N
Sbjct: 59 TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 118
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ +A + + V + G Y GF
Sbjct: 119 WVINNEKLQKRARILIPFYVGED---------------PLKSKVAAALMPGFLLYGGFYL 163
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L +K+ ++ + I+RD+ +H + + + E ++ + +L++
Sbjct: 164 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 223
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE Y ++ + VGL + + + + A + +G + F E P +
Sbjct: 224 LIELEKDYLYDLYSE--VGLAESAIK-FSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 280
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y
Sbjct: 281 LSARADENHDFFSGNGSSYVMA 302
>gi|330718304|ref|ZP_08312904.1| ribonucleotide-diphosphate reductase subunit beta [Leuconostoc
fallax KCTC 3537]
Length = 326
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 60/303 (19%), Positives = 108/303 (35%), Gaps = 27/303 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T VP+ +DL W+ + +E+ ++ G + ++L + + + +
Sbjct: 26 WEKLTQQFWLDTRVPISNDLRNWRDT---SAEEKKVLNLVFGGLTTLDTLQSQDGMAELK 82
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWAL 163
+ N + L F E+VH+ ++ I +L +F + KA
Sbjct: 83 KDAVNQKEEAVLNNIQFMESVHAKSYSSIFETLNDKAEIEAVFEWADNDEYLQYKAQRIN 142
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ V E FY+GF L NKM+ +AE
Sbjct: 143 DIYHNGTPLQKKV---------------ASVFLETFLFYSGFYTPLYFVGHNKMLNVAEI 187
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+RDES+H + + E Q +L E E + HE
Sbjct: 188 IKLIIRDESVHGTYIGYKFQIGFNQLSEDEQSELQSWMYDLLFELYENEEKFTHELY--D 245
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRV 340
+G S ++++ AN+ +G EP+F NP M+ + +FF
Sbjct: 246 EIGWT-DSVMTFLRYNANKALMNLGQEPMFPDGAEDVNPVV-MNGISTSTANHDFFSGVG 303
Query: 341 TEY 343
Y
Sbjct: 304 NGY 306
>gi|300859142|ref|YP_003784125.1| ribonucleoside-diphosphate reductase subunit beta [Corynebacterium
pseudotuberculosis FRC41]
gi|300686596|gb|ADK29518.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
pseudotuberculosis FRC41]
gi|302206836|gb|ADL11178.1| Ribonucleoside-diphosphate reductase subunit beta [Corynebacterium
pseudotuberculosis C231]
gi|302331398|gb|ADL21592.1| Ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium
pseudotuberculosis 1002]
gi|308277088|gb|ADO26987.1| Ribonucleoside-diphosphate reductase beta chain 2 [Corynebacterium
pseudotuberculosis I19]
Length = 340
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/333 (15%), Positives = 115/333 (34%), Gaps = 41/333 (12%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
+ E + +N W+P +VP+ +D+ W+ G+ ++ R ++ R +++ A
Sbjct: 30 EDPKDMEVWQRLTSNFWLPEKVPLSNDIPTWR---GMGENYRTLVTRTFTGLTLLDTVQA 86
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSI 155
++ + AF +AVH+ ++ + ++L E ++ P +
Sbjct: 87 TVGEISQIPDARTEHEQAVYTNIAFMQAVHARSYSSVFSTLCSSAEIDEAYSWAVSNPLL 146
Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN 215
+A+ + + V + + Y GF L L
Sbjct: 147 QQRASSVMSHYYGDD---------------PLKRKVASTLLSSLLLYAGFYLPLWLSTRG 191
Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
+++ A+ + I+RD+++H + + P E + + + E LE Y
Sbjct: 192 QLMNTADMIRLILRDKAVHGYYSGYKYQRGLDAKP-QRKDEMEDFTYSFCDELLALEKDY 250
Query: 276 AHETMPKGFVGL-----NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL- 329
+ + L ++ + A++ +G P ++ +S I
Sbjct: 251 SADLY-ASVDTLEEPRPTIDGVMAFVYYNADKALMNLGYAPAYELQA---AHVSPEIIAA 306
Query: 330 -----KKEKNFFETRVTEYQQG-----AELKWD 352
+ +FF + Y G E WD
Sbjct: 307 LTPESNETHDFFSGSGSSYIIGRAENTTESDWD 339
>gi|303232548|ref|ZP_07319234.1| ribonucleoside-diphosphate reductase, beta subunit [Atopobium
vaginae PB189-T1-4]
gi|302481335|gb|EFL44409.1| ribonucleoside-diphosphate reductase, beta subunit [Atopobium
vaginae PB189-T1-4]
Length = 351
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 55/326 (16%), Positives = 107/326 (32%), Gaps = 29/326 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +P+ +DL W + L + + +I R
Sbjct: 42 NWNRIADDKDLEVWN---RVTQNFWLPENIPVSNDLPSWNT---LDERWQQLIIRTFTGL 95
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A+ +A RH + AF AVH+ ++ I ++L E E
Sbjct: 96 TLLDTVQASVGDVAQIRHAITDIEQANYANFAFMVAVHARSYGTIFSTLCSSEQIDEAQA 155
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
++ A+A + Y + + G Y GF
Sbjct: 156 WVVHNDALQARAQALIPYYTQDDALKSKV---------------AAALMPGFLLYGGFYL 200
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L K+ ++ + I+RD+ +H + Q ++ +L+
Sbjct: 201 PFYLSARGKLPNTSDMIRLILRDKVIHNYYSGYKYQQKLKRLAADEQAAMKEFVFDLLYH 260
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE Y E + A + + A + +G + F E P +
Sbjct: 261 LIDLEKTYLRELYDGFDL---ADDAIAFSLYNAGKFLQNLGYDSPFTAQETHIEPEVFAQ 317
Query: 327 ID--LKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G +
Sbjct: 318 LSARADENHDFFSGSGSSYVIGTAEE 343
>gi|326803224|ref|YP_004321042.1| ribonucleoside-diphosphate reductase, beta subunit [Aerococcus
urinae ACS-120-V-Col10a]
gi|326650868|gb|AEA01051.1| ribonucleoside-diphosphate reductase, beta subunit [Aerococcus
urinae ACS-120-V-Col10a]
Length = 337
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/333 (17%), Positives = 114/333 (34%), Gaps = 34/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+++ K W N W+P +P+ +DL W L DD + +I R
Sbjct: 28 NWNKIVDEKDLEVWN---RVTQNFWLPENIPVSNDLPSWNE---LDDDWQQLITRTFTGL 81
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ ++ +A ++ + + AF VH+ ++ I ++L E E
Sbjct: 82 TLLDTVQSSIGDVAQIKNSLTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIEEAHE 141
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ ++ A+ + + + + G Y GF
Sbjct: 142 WVVDNEALQARPKALIPFYTADD---------------PLKSKIAAALMPGFLLYGGFYL 186
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L K+ ++ + I+RD+ +H + + E +Q +L +
Sbjct: 187 PFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEKQAEMKQFVFDLLDK 246
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE Y H+ GL A ++ + A + +G E F E P +
Sbjct: 247 MIGLEKTYLHQLYDG--FGL-ADEAIRFSLYNAGKFLQNLGYESPFTKEETRIAPEVFAQ 303
Query: 327 ID--LKKEKNFFETRVTEYQQGAELK-----WD 352
+ + +FF + Y G + WD
Sbjct: 304 LSARADENHDFFSGSGSSYIIGTSEETLDEDWD 336
>gi|293556439|ref|ZP_06675017.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E1039]
gi|291601403|gb|EFF31677.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E1039]
Length = 316
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 70/311 (22%), Positives = 127/311 (40%), Gaps = 28/311 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ A W+ T VP+ +DL WK L+D E+ ++K+ +G A ++L + + A+
Sbjct: 20 WDKATAQFWLDTRVPVSNDLLDWK---NLSDVEKKVVKKAVGGLALLDTLQSEEGLYALK 76
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWAL 163
++ + + L F E++H+ T+ I+ SL + E+++ P + KA
Sbjct: 77 KNARTQKEKAVLSDFTFMESIHAKTYGTILISLNTFKDIEEIYDWMNNDPKMQFKAEKIN 136
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ Q + + V V EG+ +Y+ F L NK+ +AE
Sbjct: 137 EVYQNGT---------------PMQVKVASVFLEGILYYSNFFIPLWYRGQNKLANLAEL 181
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ ++RDES+H + Q E EF T L+E E AY E +
Sbjct: 182 IKLVIRDESVHGTYLGYKFRQDFEELTLEEKDEFTNWMYTFLNELLKNEFAYTEEVYSE- 240
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK----YTENPFPWMSEVIDLKKEKNFFETR 339
+GL + ++++ AN+ +G F+ NP M+ + +FF
Sbjct: 241 -IGL-VEDIKTFVKYNANKSLQNMGFGIYFEDALVNDVNPIV-MNGISIETANHDFFSQV 297
Query: 340 VTEYQQGAELK 350
Y G +
Sbjct: 298 GAGYLMGGAEE 308
>gi|237784654|ref|YP_002905359.1| ribonucleotide-diphosphate reductase subunit beta [Corynebacterium
kroppenstedtii DSM 44385]
gi|237757566|gb|ACR16816.1| ribonucleoside-diphosphate reductase beta chain [Corynebacterium
kroppenstedtii DSM 44385]
Length = 350
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/352 (15%), Positives = 120/352 (34%), Gaps = 56/352 (15%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N+L + E + N W+P +VP+ +D++ W S L DD R + +
Sbjct: 25 NWNRL---QDPKDLEVWQRLTGNFWLPEKVPLSNDISSWNS---LPDDLRQLTVKIFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A ++ + AF ++VH+ ++ + ++L + +
Sbjct: 79 TLLDTVQATVGEVSQIPDGRTEHEQAVYTNIAFMQSVHARSYSSVFSTLCSTPEITDAYG 138
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ + +A +++ V + + Y GF
Sbjct: 139 WATQNTVLQRRATTVMKHYYARD---------------PLKRKVAATLLSSLLLYAGFYL 183
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L L K++ A+ + I+RD+++H + + +P E Q+ + +++ E
Sbjct: 184 PLWLSCRAKLMNTADMIRLILRDKAVHGYYSGYKFQRGLDAHPE-RKNELQEFTYSLVDE 242
Query: 268 ATLLEIAYAHETMPKGFVGLNA------------------PSCEQYMQFIANRRCHQIGL 309
LE Y+ E G+ A ++ + AN+ +G
Sbjct: 243 LLNLEKIYSGELYG----GITAPNNSHKSAESSFTSRPNFAGVMAFVYYNANKALMNLGY 298
Query: 310 EPLFKYTENPFPWMSEVIDLK----KEKNFFETRVTEYQQGA-----ELKWD 352
L++ + L + +FF Y G E WD
Sbjct: 299 PALYEDEAERTE-PDILAALTPEASETHDFFSGSGASYVIGKTEATEESDWD 349
>gi|209877300|ref|XP_002140092.1| ribonucleoside-diphosphate reductase beta subunit family protein
[Cryptosporidium muris RN66]
gi|209555698|gb|EEA05743.1| ribonucleoside-diphosphate reductase beta subunit family protein
[Cryptosporidium muris RN66]
Length = 357
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 51/324 (15%), Positives = 99/324 (30%), Gaps = 33/324 (10%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
+ +L L P+KY W Y W + DL +++
Sbjct: 11 KQKQETILLDNPFRWVLFPIKYNRLWNFYKKYEVVFWTAEVISYIKDL------GIISEV 64
Query: 78 ERLMIKRNLGF-----FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
+R + F S+ L + + + PE R Y E ++ F
Sbjct: 65 DRRFVDSIELLFSSRVFISNTGLDSVLVACEFLSQIQVPEARGYFSFTICMENIYKEVFM 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-------PSFTTGTKDADQEF 185
I + + E +E AK + L+ ++ F D+ F
Sbjct: 125 NYIDVIRKYKSE---NIKEYDHKEAKMRYHLKLKDIITDNQHYQRKIEFANQLLDSSVPF 181
Query: 186 LQDLFVFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+ L ++ ++ + + + + + I RDE F + +
Sbjct: 182 SEKLIIYTIIKRVFSSGIHLIRQSFFNKEGPVLEQLCDALDRIRRDELFQAEFCLSIAR- 240
Query: 245 IKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ TK + +ML A +E + + + Y+ F A+
Sbjct: 241 ------SMKTKPSNEYIISMLENAITIEKGFIFSIFNLEILEIPREDIVAYLLFSADEIL 294
Query: 305 HQIGLEPLFKYTENPFPWMSEVID 328
++ F + NPF SE+I
Sbjct: 295 VELKYPRHFNVS-NPF---SELIS 314
>gi|144227519|gb|AAZ44308.2| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
hyopneumoniae J]
Length = 353
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/322 (16%), Positives = 113/322 (35%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++P+ +DL W++ L+ + ++ R
Sbjct: 44 NWNIINDPKDLEVWT---RIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 97
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF VH+ ++ I ++L E E N
Sbjct: 98 TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 157
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ +A + + V + G Y GF
Sbjct: 158 WVINNEKLQKRARILIPFYVGED---------------PLKSKVAAALMPGFLLYGGFYL 202
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L +K+ ++ + I+RD+ +H + + + E ++ + +L++
Sbjct: 203 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 262
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE Y ++ + VGL + + + + A + +G + F E P +
Sbjct: 263 LIELEKDYLYDLYSE--VGLAESAIK-FSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 319
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y
Sbjct: 320 LSARADENHDFFSGNGSSYVMA 341
>gi|54020059|ref|YP_115670.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
hyopneumoniae 232]
gi|53987232|gb|AAV27433.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
hyopneumoniae 232]
Length = 353
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/322 (16%), Positives = 113/322 (35%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++P+ +DL W++ L+ + ++ R
Sbjct: 44 NWNIINDPKDLEVWT---RIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 97
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A +A +H + AF VH+ ++ I ++L E E N
Sbjct: 98 TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 157
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ +A + + V + G Y GF
Sbjct: 158 WVINNEKLQKRARILIPFYVGED---------------PLKSKVAAALMPGFLLYGGFYL 202
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L +K+ ++ + I+RD+ +H + + + E ++ + +L++
Sbjct: 203 PFYLSARSKLPNTSDVIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 262
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE Y ++ + VGL + + + + A + +G + F E P +
Sbjct: 263 LIELEKDYLYDLYSE--VGLAESAIK-FSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 319
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y
Sbjct: 320 LSARADENHDFFSGNGSSYVMA 341
>gi|71893573|ref|YP_279019.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
hyopneumoniae J]
gi|72080562|ref|YP_287620.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
hyopneumoniae 7448]
Length = 339
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/322 (16%), Positives = 113/322 (35%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++P+ +DL W++ L+ + ++ R
Sbjct: 30 NWNIINDPKDLEVWT---RIVQNFWIPEKIPLSNDLESWRT---LSPTWKKVVTRTFTGL 83
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A +H + AF VH+ ++ I ++L E E N
Sbjct: 84 TLLDTIQATIGDVAQIKHSLTDHEQVIYTNFAFMVGVHARSYGSIFSTLCSSEEIEEAHN 143
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ +A + + V + G Y GF
Sbjct: 144 WVINNEKLQKRARILIPFYVGED---------------PLKSKVAAALMPGFLLYGGFYL 188
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L +K+ ++ + I+RD+ +H + + + E ++ + +L++
Sbjct: 189 PFYLSARSKLPNTSDIIRLILRDKVIHNYYSGYKFQKKVEKLSPEKQDEIKKFTFDLLYK 248
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE Y ++ + VGL + + + + A + +G + F E P +
Sbjct: 249 LIELEKDYLYDLYSE--VGLAESAIK-FSIYNAGKFLQNLGYDSPFSKEETEIEPEIFSQ 305
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y
Sbjct: 306 LSARADENHDFFSGNGSSYVMA 327
>gi|56694763|ref|YP_164483.1| ribonucleotide reductase subunit 2 [Cercopithecine herpesvirus 2]
gi|52843315|gb|AAU88106.1| small subunit of ribonucleotide reductase [Cercopithecine
herpesvirus 2]
Length = 325
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 72/308 (23%), Positives = 116/308 (37%), Gaps = 32/308 (10%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ +E+ D GLTD+E + F ++++ LV N + +
Sbjct: 41 NRWLESELVFAGDEED---VGGLTDEELNFYRFLFTFLSAADDLVTEN-LGGLSGLFPQK 96
Query: 112 ECRQYLLRQAFEEAVHSHTFQYI----ITSLGLDEGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I + G E P+I K +W Q
Sbjct: 97 DILHYYVEQEAIEVVHSRVYSIIQLVLFRNDGQARREYVARTIHHPAIRVKVDWLEARVQ 156
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
S F+ ++ EG++F FA I L N + + I
Sbjct: 157 ACESVPEK--------------FILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 202
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K ++ + EA +EI + P L
Sbjct: 203 SRDEAVHTTASCYIYNNYLA----GHHKPEPERVYRLFREAVEIEIGFIRSQAPADSRIL 258
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFP-WMSEVIDLKKEKNFFETRVTEY 343
+A + E Y++F A+R I ++PLF P P + ++ +K NFFE R T Y
Sbjct: 259 DAAALAAIENYVRFSADRLLALIRMKPLFGAPA-PAPSFPLSLMSTEKHTNFFECRSTAY 317
Query: 344 QQGAELKW 351
GA +
Sbjct: 318 A-GAVVND 324
>gi|45268714|dbj|BAD12266.1| p53-inducible ribonucleotide reductase small subunit 2 short form
gamma [Homo sapiens]
Length = 139
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 9/121 (7%)
Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
+DE LH +F + + K +++ R ++ +A +E + E +P G +G+N
Sbjct: 14 QDEGLHCDFACLMFQYLVN-------KPSEERVREIIVDAVKIEQEFLTEALPVGLIGMN 66
Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAE 348
+QY++F+A+R ++G +F ENPF +M E I L+ + NFFE RV+EYQ+ A
Sbjct: 67 CILMKQYIEFVADRLLVELGFSKVF-QAENPFDFM-ENISLEGKTNFFEKRVSEYQRFAV 124
Query: 349 L 349
+
Sbjct: 125 M 125
>gi|313607545|gb|EFR83848.1| ribonucleoside-diphosphate reductase, beta subunit [Listeria
monocytogenes FSL F2-208]
Length = 187
Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 4/177 (2%)
Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
++ + E L + + EG+ FY+GFA +L R NKM G + +I RDE
Sbjct: 2 DAYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDE 61
Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPS 291
H F +VI I ENP L T+E + + A LE ++ E + +G G++
Sbjct: 62 LAHSKFISEVIRAILGENPELQTEELVEYTHEAFRHAVELETEWSEEVL-QGIEGIDVEE 120
Query: 292 CEQYMQFIANRRCHQIGLEPLFK-YTENPFPWMSEVID--LKKEKNFFETRVTEYQQ 345
Y+++ AN+ +G+ L+ +++N W+ D + + +FFE R + Y++
Sbjct: 121 MVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTETKTDFFEMRNSSYKK 177
>gi|83722609|ref|YP_443887.1| ribonucleotide reductase subunit 2 [Papiine herpesvirus 2]
gi|75905762|gb|ABA29294.1| UL40 [Papiine herpesvirus 2]
Length = 339
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 70/308 (22%), Positives = 117/308 (37%), Gaps = 32/308 (10%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ +E+ D GLTD+E + F ++++ LV N + +
Sbjct: 55 NRWLESELVFAGDEED---VAGLTDEELNFYRFLFTFLSAADDLVTEN-LGGLSGLFPQK 110
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE----GELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L ++ E P+I K +W Q
Sbjct: 111 DILHYYVEQEAIEVVHSRVYSIIQLVLFRNDEQARREYVARTIHHPAIRVKVDWLEARVQ 170
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
S F+ ++ EG++F FA I + N + + I
Sbjct: 171 ACESVPEK--------------FILMILIEGIFFAASFAAIAYMRTNNLLRVTCQSNDLI 216
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N + ++ + EA +EI + P L
Sbjct: 217 SRDEAVHTTASCYIYNNYLAGHRKPEP----ERVYRLFREAVEIEIGFIRSQAPADSRIL 272
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLFKYTENPFP-WMSEVIDLKKEKNFFETRVTEY 343
+A + E Y++F A+R I ++PLF P P + ++ +K NFFE R T Y
Sbjct: 273 DAAALAAIENYVRFSADRLLALIEMKPLFGAPA-PAPSFPLNLMSTEKHTNFFERRSTAY 331
Query: 344 QQGAELKW 351
GA +
Sbjct: 332 A-GAVVND 338
>gi|269976951|ref|ZP_06183925.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
mulieris 28-1]
gi|269934782|gb|EEZ91342.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
mulieris 28-1]
Length = 333
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 35/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W +N W+P +VP+ +DL W N L+D ER + R
Sbjct: 25 NWNNITDEKDREIWN---RLTSNFWLPEKVPLSNDLPSW---NQLSDMERSVTMRVFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A ++ + + AF +AVH+ ++ I ++L +
Sbjct: 79 TMLDTVQATVGEISQIQDGITEHEQAIYANIAFMQAVHARSYSSIFSTLSNTPEIDAAYT 138
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ +A LQ+ S + Y GF
Sbjct: 139 WAVNNDLLQERAKMVLQHYYGEDSLKRKVASTLLSSL---------------LLYAGFYL 183
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L ++ A+ + I+RD+++H + + +P E + + +L +
Sbjct: 184 PLYFSARGILMNTADMIRLILRDKAVHGYYSGYKYQRGLDLHPE-RVAEMEDFTFQLLDD 242
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSE 325
LE+ Y+ E GL ++++ AN+ +G F + TE ++
Sbjct: 243 LYELELKYSGEIYE--PTGL-MDDVAVFVRYNANKAMMNLGYPTRFAPEETEVKADILAA 299
Query: 326 VIDLKKEK-NFFETRVTEYQQGAE-----LKWD 352
+ +E +FF + Y G+ WD
Sbjct: 300 LAPGSEETHDFFSGSGSSYVIGSAESTSDEDWD 332
>gi|51518029|ref|YP_067954.1| BaRF1 [Macacine herpesvirus 4]
gi|18025480|gb|AAK95424.1| BaRF1 [Macacine herpesvirus 4]
Length = 302
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 63/298 (21%), Positives = 109/298 (36%), Gaps = 26/298 (8%)
Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
N W + + D K L + + K F A +E LV N + + +
Sbjct: 22 RNRWFAAHIVLTKDCGCLK---LLNERDLEFYKFLFTFLAMAEKLVNFN-IDELVTSFES 77
Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
+ Y Q E VH T+ I+ L + N Y E + + +
Sbjct: 78 HDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADGALQAKISWLRDKV 137
Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
+ + T K + +++ EG++F + F I L M G+ YI RD
Sbjct: 138 AAAVTLPEK----------ILVFLLIEGIFFISSFYSIALLRVRGLMPGVCLANNYISRD 187
Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
E LH + N + + Q+ + A +E A+ E G ++
Sbjct: 188 ELLHTRAASLLYNSMTAPADRPGAQWIQE----LFRTAVEVETAFI-EARGWGVTLVDVQ 242
Query: 291 SCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
+ Q+++ A+R IGL PL+ + P +M+ + K+ NFFE +Y
Sbjct: 243 AIRQFLEATADRILGDIGLPPLYGTPPPRDCPLTYMTSI----KQTNFFEQESADYTM 296
>gi|227876139|ref|ZP_03994257.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC
35243]
gi|227843295|gb|EEJ53486.1| ribonucleoside-diphosphate reductase [Mobiluncus mulieris ATCC
35243]
Length = 333
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 35/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W +N W+P +VP+ +DL W N L+D ER + R
Sbjct: 25 NWNNITDEKDREIWN---RLTSNFWLPEKVPLSNDLPSW---NQLSDMERNVTMRVFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A ++ + + AF +AVH+ ++ I ++L +
Sbjct: 79 TMLDTVQATVGEISQIQDGITEHEQAIYANIAFMQAVHARSYSSIFSTLSNTPEIDAAYT 138
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ +A LQ+ S + Y GF
Sbjct: 139 WAVNNDLLQERAKMVLQHYYGEDSLKRKVASTLLSSL---------------LLYAGFYL 183
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L ++ A+ + I+RD+++H + + +P E + + +L +
Sbjct: 184 PLYFSARGILMNTADMIRLILRDKAVHGYYSGYKYQRGLDLHPE-RAAEMEDFTFQLLDD 242
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSE 325
LE+ Y+ E GL ++++ AN+ +G F + TE ++
Sbjct: 243 LYELELKYSGEIYE--PTGL-MDDVAVFVRYNANKAMMNLGYPTRFAPEETEVKADILAA 299
Query: 326 VIDLKKEK-NFFETRVTEYQQGAE-----LKWD 352
+ +E +FF + Y G+ WD
Sbjct: 300 LAPGSEETHDFFSGSGSSYVIGSAESTSDEDWD 332
>gi|9628063|ref|NP_042657.1| ribonucleotide reductase, small subunit [Equid herpesvirus 2]
gi|82013696|sp|Q66662|RIR2_EHV2 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|695233|gb|AAC13848.1| ribonucleotide reductase, small subunit [Equid herpesvirus 2]
Length = 305
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 54/299 (18%), Positives = 109/299 (36%), Gaps = 26/299 (8%)
Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
N W P+++ + D+A +S L + K F A +E LV N + A+ +
Sbjct: 25 QNRWFPSQISLTSDVACLQS---LNPRDLEFYKFLFSFLAMAEKLVNFN-IQALVADFHS 80
Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
+ Y Q E +H + I+ ++ K + + L+
Sbjct: 81 HDLEHYYTEQEAMENIHGKVYANILNMF----------FKNNVGEMQKYAREIVGDEALA 130
Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
+ + ++ + + + +++ EG++F + F I +L M G+ YI RD
Sbjct: 131 AKLHWLHGRVSEAKTRAEKVLVFLLIEGIFFISSFYSIATLRVRGLMNGVCMANDYISRD 190
Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
E +H + N + + K + + EA +E + +G +N
Sbjct: 191 EWVHTRAAALLFNTLVPDE----EKPSPEWIGALFREAVEVEYNFIL-AKGRGVSHVNVA 245
Query: 291 SCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
++++ A+R I + P++ P K NFFE ++Y
Sbjct: 246 DINRFLEATADRILKSINVGPVYGTQPPPNCPL----VYTGCLKNVNFFERESSDYTTA 300
>gi|306819415|ref|ZP_07453122.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
mulieris ATCC 35239]
gi|307701705|ref|ZP_07638721.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
mulieris FB024-16]
gi|304647707|gb|EFM45025.1| ribonucleotide-diphosphate reductase subunit beta [Mobiluncus
mulieris ATCC 35239]
gi|307613208|gb|EFN92461.1| ribonucleoside-diphosphate reductase, beta subunit [Mobiluncus
mulieris FB024-16]
Length = 333
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 60/333 (18%), Positives = 118/333 (35%), Gaps = 35/333 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W +N W+P +VP+ +DL W N L+D ER + R
Sbjct: 25 NWNNITDEKDREIWN---RLTSNFWLPEKVPLSNDLPSW---NQLSDMERSVTMRVFTGL 78
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ A ++ + + AF +AVH+ ++ I ++L +
Sbjct: 79 TMLDTVQATVGEISQIQDGITEHEQAIYANIAFMQAVHARSYSSIFSTLSNTPEIDAAYT 138
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ +A LQ+ S + Y GF
Sbjct: 139 WAVNNDLLQERAKMVLQHYYGEDSLKRKVASTLLSSL---------------LLYAGFYL 183
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L ++ A+ + I+RD+++H + + +P E + + +L +
Sbjct: 184 PLYFSARGILMNTADMIRLILRDKAVHGYYSGYKYQRGLDLHPE-RAAEMEDFTFQLLDD 242
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF--KYTENPFPWMSE 325
LE+ Y+ E GL ++++ AN+ +G F + TE ++
Sbjct: 243 LYELELKYSGEIYE--PTGL-MDDVAVFVRYNANKAMMNLGYPTRFAPEETEVKADILAA 299
Query: 326 VIDLKKEK-NFFETRVTEYQQGAE-----LKWD 352
+ +E +FF + Y G+ WD
Sbjct: 300 LAPGSEETHDFFSGSGSSYVIGSAESTSDEDWD 332
>gi|301629349|ref|XP_002943805.1| PREDICTED: ribonucleoside-diphosphate reductase subunit beta-like,
partial [Xenopus (Silurana) tropicalis]
Length = 120
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 54/86 (62%), Positives = 70/86 (81%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG 73
++RVN DKR++N ++DVNQL+P KY WAWEKYL+ C NHWMP EV M D+ALWK NG
Sbjct: 35 QRRVNAADKRIINGQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMTRDIALWKDPNG 94
Query: 74 LTDDERLMIKRNLGFFASSESLVANN 99
LT+DER +++RNLGFF +++SL ANN
Sbjct: 95 LTEDERRIVRRNLGFFTTADSLAANN 120
>gi|289677031|ref|ZP_06497921.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae pv. syringae FF5]
Length = 151
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 49/88 (55%), Positives = 63/88 (71%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+ GL+ ++ RV VD+K M+N R+D+NQL+P KY WAW+KYL C NHWMP EV
Sbjct: 64 LDVAEGLAELEGASARVAVDEKMMINCRADLNQLVPFKYDWAWQKYLDGCANHWMPQEVN 123
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGF 88
M D+ALWK+ GLTDDER ++ RNLGF
Sbjct: 124 MTADIALWKNPEGLTDDERRIVMRNLGF 151
>gi|269864962|ref|XP_002651756.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|269866721|ref|XP_002652369.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220062645|gb|EED41686.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063933|gb|EED42300.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 135
Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
M G+ + I RDE LH +F + I + ++ EA +E +
Sbjct: 1 MPGLTFSNELISRDEGLHTDFACLLHKYINNK---------CTVIEDIVREAVAIEQEFL 51
Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336
E++P +G+N QY++F+A+R +G + ++ + NPF +M E I L+ + NFF
Sbjct: 52 SESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPFDFM-ENISLQGKTNFF 109
Query: 337 ETRVTEYQQG 346
E R YQ+G
Sbjct: 110 ERREANYQKG 119
>gi|82503214|ref|YP_401656.1| BaRF1 [Human herpesvirus 4]
gi|139424488|ref|YP_001129453.1| BaRF1 [Human herpesvirus 4 type 2]
gi|238055355|sp|P0CAP6|RIR2_EBVB9 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase 38 kDa subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|238055356|sp|P0CAP7|RIR2_EBVA8 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase 38 kDa subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|238055357|sp|P0C701|RIR2_EBVG RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase 38 kDa subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|1334857|emb|CAA24843.1| unnamed protein product [Human herpesvirus 4]
gi|23893602|emb|CAD53406.1| ribonucleoside-diphosphate reductase small chain [Human herpesvirus
4]
gi|64173256|gb|AAY41106.1| unknown [Human herpesvirus 4]
gi|82703964|gb|ABB89233.1| BaRF1 [Human herpesvirus 4]
Length = 302
Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats.
Identities = 63/298 (21%), Positives = 111/298 (37%), Gaps = 26/298 (8%)
Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
N W + + D K L + + K F A +E LV N + + +
Sbjct: 22 RNRWFAAHIVLTKDCGCLK---LLNERDLEFYKFLFTFLAMAEKLVNFN-IDELVTSFES 77
Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
+ Y Q E VH T+ I+ L + N Y E + + +
Sbjct: 78 HDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMADEALQAKISWLRDKV 137
Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
+ + T K + +++ EG++F + F I L M GI YI RD
Sbjct: 138 AAAVTLPEK----------ILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRD 187
Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
E LH + N + + Q+ + A +E A+ E +G ++
Sbjct: 188 ELLHTRAASLLYNSMTAKADRPRATWIQE----LFRTAVEVETAFI-EARGEGVTLVDVR 242
Query: 291 SCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
+ +Q+++ A+R IG PL+ + P +M+ + K+ NFFE ++Y
Sbjct: 243 AIKQFLEATADRILGDIGQAPLYGTPPPKDCPLTYMTSI----KQTNFFEQESSDYTM 296
>gi|311993498|ref|YP_004010363.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj9]
gi|295917455|gb|ADG60126.1| NrdB aerobic NDP reductase small subunit [Acinetobacter phage Acj9]
Length = 379
Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats.
Identities = 60/341 (17%), Positives = 123/341 (36%), Gaps = 22/341 (6%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
++ I + + N+D + V + +K+ E + W P EV + D +
Sbjct: 1 MTTIFN-QAKFNIDQPMFFGPDTGVARYEIVKHQKFEELTTKQLSFFWRPEEVNLTTDKS 59
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ + L ++ NLG+ +S+ + + S+ +++ F E +
Sbjct: 60 QF---DKLWAPYQIQFTDNLGYQILMDSVQGRAPAIVLASICSDVALETWIMTWTFSETI 116
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD------ 180
HS ++ +II +L D ++F+ I A+A + L
Sbjct: 117 HSRSYTHIIRNLFSDPSKIFDGVLANKEIMARATSICERYDLLHKLIILYQADKIRGVAT 176
Query: 181 -----ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVGIAEQYQYIMRDESLH 234
++ L E + FY F + K M G + Q+I RDE+LH
Sbjct: 177 PEQLREVKKALYMCLHAINALEAIRFYVSFISTWNFFENMKIMEGNMKIMQFIARDENLH 236
Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNA 289
++ Q+ + E + ++ + E E A+A G GL
Sbjct: 237 HQGTRYILQQMNKGIDGTEWREIALECKAEAEELFIEVRNQERAWASYVYRDGCPPGLTV 296
Query: 290 PSCEQYMQFIANRRCHQIGLE-PLFKYTENPFPWMSEVIDL 329
++ + + +GL P+ + +P PW+++ +
Sbjct: 297 ELVHDFIDYQLVPAMNNVGLTCPVQRPKRHPLPWVNKYLMA 337
>gi|297724673|ref|NP_001174700.1| Os06g0257450 [Oryza sativa Japonica Group]
gi|255676900|dbj|BAH93428.1| Os06g0257450 [Oryza sativa Japonica Group]
Length = 162
Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
+N QY++F+A+R +G + ++ NPF WM E+I L+ + NFFE RV +YQ+
Sbjct: 83 MNGDLMSQYIEFVADRLLMALGCKKMYNVA-NPFDWM-ELISLQGKTNFFEKRVGDYQKA 140
Query: 347 AELK 350
+ +
Sbjct: 141 SVMS 144
>gi|294669615|ref|ZP_06734682.1| hypothetical protein NEIELOOT_01516 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308528|gb|EFE49771.1| hypothetical protein NEIELOOT_01516 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 296
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 53/284 (18%), Positives = 106/284 (37%), Gaps = 26/284 (9%)
Query: 13 GEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
+ + + + M + +V + KY + + W P E+ + D +
Sbjct: 7 PKTKNDALKEPMFFGQPVNVARYDQQKYEVFEKLIEKQLSFFWRPEEIDVSRDRIDY--- 63
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
L + E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 64 ANLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIPELETWIETWSFSETIHSRSY 123
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS-----------------F 174
+II ++ D +F+ + I A+A Y L +
Sbjct: 124 THIIRNIVNDPSVVFDDIVQNEYIIARAEDIACYYDDLIEYTQYYNLLGEGTHNVGGKLV 183
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
T ++ ++ L V+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 184 TVSLRELKKKLYLCLMCVNVL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALH 242
Query: 235 LNFGIDVINQIKIENPHLWTK----EFQQKSRTMLHEATLLEIA 274
L ++N ++ E Q + + +A E
Sbjct: 243 LTSTQHMLNLMRAGVDDPEMAEIAVELQDECFKLFKKAAEQEKN 286
>gi|13508061|ref|NP_110010.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
pneumoniae M129]
gi|2500211|sp|P75461|RIR2_MYCPN RecName: Full=Ribonucleoside-diphosphate reductase subunit beta;
AltName: Full=Ribonucleotide reductase small subunit
gi|1674208|gb|AAB96162.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
pneumoniae M129]
gi|301633274|gb|ADK86828.1| ribonucleoside-diphosphate reductase, beta subunit [Mycoplasma
pneumoniae FH]
Length = 339
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 48/308 (15%), Positives = 104/308 (33%), Gaps = 26/308 (8%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
E + N W+P ++P+ +D+ WK L+ + + +I + +++ A +
Sbjct: 41 EVWNRITQNFWLPEKIPVSNDIPSWKQ---LSKEWQDLITKTFTGLTLLDTIQATIGDIK 97
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
+ + AF VH+ ++ I ++L E E + S+ +A
Sbjct: 98 QIDYALTDHEQVIYANFAFMVGVHARSYGTIFSTLCTSEQITEAHEWVVKTESLQKRAKA 157
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ Y V + G Y GF L ++ +
Sbjct: 158 LIPYYTGKD---------------PLKSKVAAALMPGFLLYGGFYLPFYLSSRKQLPNTS 202
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I+RD+ +H + + + E ++ +++E LE AY E
Sbjct: 203 DIIRLILRDKVIHNYYSGYKFQRKVEKMSKEKQAEMKRFVFDLMYELIELEKAYLKELYE 262
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFET 338
G+ + + + + A + +G + F E + + +FF
Sbjct: 263 G--FGIVEDAIK-FSIYNAGKFLQNLGYDSPFTEEETRIKPEIFAQLSARADENHDFFSG 319
Query: 339 RVTEYQQG 346
+ Y G
Sbjct: 320 NGSSYVMG 327
>gi|46519447|gb|AAT00095.1| JM118 [Macaca fuscata rhadinovirus]
Length = 314
Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 63/323 (19%), Positives = 107/323 (33%), Gaps = 28/323 (8%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
D L + N W P+++ + +D L+ +R +
Sbjct: 12 ESPDRF-LYASDHPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLF 67
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146
F +ESLV N + + + SN + Y Q E +H + I+
Sbjct: 68 TFLGMAESLVNFN-IEDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDL 126
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
Y + A + + + + T K + ++V EG++F + F
Sbjct: 127 MTYAKKIVEDATLAKKIDWLHSRVRKATTRAEK----------VLLFLVIEGIYFISSFY 176
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
I M G+ YI RDE LH + N + + +
Sbjct: 177 SIGLFRLRGVMRGVCLANDYISRDELLHTRAAGLLYNTMISRD----ESPSVAYIHGLFR 232
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWM 323
EA +E + + +G +N EQ++Q A+R I + PLF P +
Sbjct: 233 EAVEIETLFIR-SKSRGVTMVNVGDIEQFLQATADRILKSINVPPLFGARPPNACPLSY- 290
Query: 324 SEVIDLKKEKNFFETRVTEYQQG 346
K NFFE +EY
Sbjct: 291 ----TSAKSVNFFERDNSEYVTS 309
>gi|24943146|ref|NP_733908.1| ORF54 [Callitrichine herpesvirus 3]
gi|13676697|gb|AAK38263.1|AF319782_57 ORF54 [callitrichine herpesvirus 3]
Length = 302
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/298 (17%), Positives = 106/298 (35%), Gaps = 26/298 (8%)
Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
N W+ + + + + L + K F A +E LV N + + +
Sbjct: 22 RNRWVAVHISL---VRDCEGVRELNPRDLEFYKFLFTFLAMAEKLVNFN-IDELLPQFCS 77
Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
+ Y Q E +H T+ I+ L + + Y + + + +
Sbjct: 78 HDIEHYYTEQKAMENIHGETYANILNMLFDGDKKAVAQYADEVIADKALQAKICWLNGMV 137
Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
+ + T K + +++ EG++F + F I L M GI YI RD
Sbjct: 138 NSAVTKAEK----------ILIFLLIEGIFFISSFYSIAVLRTRGIMPGICLANNYISRD 187
Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
E LH + N + ++ + + + A +E + E +G ++
Sbjct: 188 ELLHTTAATLLYNSMTSKSERPQS----EWIEALFRRAVDVEYNFI-EARGRGVTNIDLK 242
Query: 291 SCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
+++ A+R +G+ ++ + P +M+ K NFFE +EY
Sbjct: 243 GIRDFLEATADRILGDLGMTAIYDTRPPPDCPLTYMT----SVKHTNFFEQENSEYTM 296
>gi|167948644|ref|ZP_02535718.1| Ribonucleotide reductase, beta subunit [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 124
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/127 (42%), Positives = 66/127 (51%), Gaps = 3/127 (2%)
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
YIMRDE LH +FGI V QI +E Q R M E E AYA + +
Sbjct: 1 YIMRDEVLHASFGIRVAKQIMLEENIAPDP---QAIREMWDECEAAEDAYAGYILRDPIL 57
Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
G + +++ANRR QIGL + E PW+ E +L+KEKNFFET VTEYQ
Sbjct: 58 GYSKDDHMGQFRYVANRRARQIGLSEPYPGAEATLPWLDEQANLRKEKNFFETTVTEYQT 117
Query: 346 GAELKWD 352
G L WD
Sbjct: 118 GGALNWD 124
>gi|71894414|ref|YP_278522.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
synoviae 53]
gi|71851202|gb|AAZ43811.1| ribonucleoside-diphosphate reductase beta chain [Mycoplasma
synoviae 53]
Length = 339
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/322 (16%), Positives = 108/322 (33%), Gaps = 29/322 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++P+ +DL W + + ++ R
Sbjct: 30 NWNFVNDPKDLEVWN---RVTQNFWLPEKIPVSNDLKSWNE---MDKSWQELLVRTFTGL 83
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+++ A +A + + AF VH+ ++ I ++L + +
Sbjct: 84 TLLDTIQATLGDIAQIPNSLTDHEQVIYANFAFMVGVHARSYGTIFSTLSNSDDIEKAHE 143
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ A+A + + Y + + + G Y GF
Sbjct: 144 WVINNEKLQARAKFLVPYYTSKD---------------PLKSKIAAALMPGFLLYGGFYL 188
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L K+ ++ + I+RD+ LH + Q + P E+++ + +++E
Sbjct: 189 PFYLSARGKLPNTSDIIRLILRDKVLHNYYSGYKYRQKVEKLPKEKQAEYKEFTFKIMYE 248
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEV 326
LE + E GL A + + A + G E F E P +
Sbjct: 249 LIELEKDFLRELYDG--FGL-ADEAIAFSLYNAGKFLQNCGYESPFTPEETKISPEVFAQ 305
Query: 327 ID--LKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 306 LSARADENHDFFSGNGSSYVMG 327
>gi|270000178|gb|ACZ57936.1| m015L [Myxoma virus]
Length = 103
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+++ +++ EA ++E + E +P +G+N QY++F+A+R ++G +F T
Sbjct: 1 EERVASIIKEAVVIEQRFLTEALPVRLIGMNCELMCQYIEFVADRLIAELGYSKIFSAT- 59
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
NPF +M E I L+ + NFFE RV++YQ+ +
Sbjct: 60 NPFDFM-ENISLEGKTNFFEKRVSDYQRMGVV 90
>gi|84997706|ref|XP_953574.1| ribonucleoside reductase [Theileria annulata]
gi|65304571|emb|CAI72896.1| ribonucleoside reductase, putative [Theileria annulata]
Length = 332
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/321 (15%), Positives = 116/321 (36%), Gaps = 28/321 (8%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+D+ +L + + P+++ W Y NN W + DD+ K L
Sbjct: 16 NDEILLKENHNRWVMFPIEHDTFWILYKEVENNFWAAEDFIFTDDI---KLLYQLPKPIF 72
Query: 80 LMIKRNLGFFASSESLVANNIV---LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+ L F + ++ + V L + + E R + Q +E +H+ T +
Sbjct: 73 NTLLNLLSFHINLDNKLICRPVDITLDLLSEVQIAEARAFYGFQLTDENIHTETISSMFQ 132
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
LFN + +++ + Y + + + ++ F + + V+
Sbjct: 133 --------LFNQQLDTNIVSSNTLFLSSY--GMDKIIWLYNECENNKCFFKR-VLLLVIM 181
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
+ +++ + L + + + I D +H F ++ K
Sbjct: 182 KLLFYCSINILRDYLLKEKLLPTFITAFDSITNDRIIHTRFAHCTFRLLQN-------KM 234
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ + ++ +A LE + + F L+ + Y+++I N G + L+ +
Sbjct: 235 LESEVLEIIKQALKLEYQFILQYFTIQFFNLSTNVIKSYLEWIGNNILLVCGYKTLY-TS 293
Query: 317 ENPFPWMSEVI---DLKKEKN 334
E W++ I +++K+ N
Sbjct: 294 EFDIDWLNHPIIDLNIQKQTN 314
>gi|291336893|gb|ADD96422.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
Length = 172
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 66/159 (41%), Positives = 103/159 (64%), Gaps = 1/159 (0%)
Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
+ VNQ+LP K+ W+ +L + N+W P E+ M D+ WK + L+DDE+L++KR LGF
Sbjct: 13 AGVNQILPHKHKSVWDNFLKSVANNWSPAEINMSTDIKQWK-GDDLSDDEKLLVKRCLGF 71
Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
FA SESLVANN++L + R +++ ECRQY+LRQA+EE++H+ T S GL E+F
Sbjct: 72 FAGSESLVANNLLLTVARWVTDAECRQYILRQAYEESLHNWTVVTCCDSFGLKVSEVFEA 131
Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQ 187
Y+ + SI AK ++ + T ++ F+T T + + F +
Sbjct: 132 YQNIESIKAKDDFLMGITTDVNRQGFSTKTSEGKRIFKK 170
>gi|59912|emb|CAA24930.1| unnamed protein product [Human herpesvirus 2]
Length = 337
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 61/307 (19%), Positives = 113/307 (36%), Gaps = 30/307 (9%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 53 NRWLETELVFVGDEED---VSKLSEGELGFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 108
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
+ Y + Q E VHS + I L + + Y + + +
Sbjct: 109 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTINHPAIRVKVDWLEA--- 165
Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
+ + + + + F+ ++ EG++F FA I L N + + I RDE
Sbjct: 166 -------RVRECDSVPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLISRDE 218
Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA-- 289
++H + N ++ K + + EA +EI + P L+
Sbjct: 219 AVHTTASCYIYNNYLGDH----AKPEAARVYRLFREAVDIEIGFIRSQAPTDSSILSPGA 274
Query: 290 -PSCEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
+ E Y++F A+R I ++PL+ P ++ K NFFE R T Y
Sbjct: 275 LAAIENYVRFSADRLLGLIHMQPLYSAPAPDASFPLS----LMSTDKHTNFFECRSTSYA 330
Query: 345 QGAELKW 351
GA +
Sbjct: 331 -GAVVND 336
>gi|26553540|ref|NP_757474.1| ribonucleotide-diphosphate reductase subunit beta [Mycoplasma
penetrans HF-2]
gi|26453546|dbj|BAC43878.1| ribonucleotide diphosphate reductase subunit beta [Mycoplasma
penetrans HF-2]
Length = 339
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 51/328 (15%), Positives = 108/328 (32%), Gaps = 29/328 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + K W N W+P ++ + +DL W N L + + ++ R
Sbjct: 30 NWNFINDDKDLEVWN---RITQNFWLPEKIAISNDLPSW---NKLDSNWQELVVRTFTGL 83
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFN 147
+S+ A +A ++ + AF VH+ ++ I ++ + +
Sbjct: 84 TLLDSIQATIGDVAQVKNSLTDHEQVIYTNFAFMVGVHARSYGSIFSTFCSSDQINSAHD 143
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
S+ +A + Y V + G Y GF
Sbjct: 144 WVVNCESLQKRAQVLIPYYIGDD---------------PLKSKVAAAMMPGFLLYGGFYL 188
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
LG N + + + I+RD+ +H + + + P E ++ +L++
Sbjct: 189 PFYLGAKNLLPNTLDIIRLILRDKVIHNYYSGYKYQKKVAKLPPEKQAEMKKFVFDLLYQ 248
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMS 324
LE + +E + A ++ + A + +G + F E ++
Sbjct: 249 VIDLEKEFLNELYAGFNI---ADQAIKFSVYNAGKFLQNLGYDSPFTPEETEIKPEIFVQ 305
Query: 325 EVIDLKKEKNFFETRVTEYQQGAELKWD 352
+ +FF + Y G + D
Sbjct: 306 LSARADENHDFFSGSGSSYIMGNVEETD 333
>gi|18653874|ref|NP_570808.1| small ribonucleotide reductase [Macacine herpesvirus 5]
gi|4494972|gb|AAD21394.1| small ribonucleotide reductase [Macaca mulatta rhadinovirus 17577]
Length = 314
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 62/323 (19%), Positives = 107/323 (33%), Gaps = 28/323 (8%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
D L + N W P+++ + +D L+ +R +
Sbjct: 12 ESPDRF-LYASDHPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLF 67
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146
F +ESLV N + + + SN + Y Q E +H + I+
Sbjct: 68 TFLGMAESLVNFN-IEDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDL 126
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
+Y + A + + + + T K + ++V EG++F + F
Sbjct: 127 MIYAKKIVEDATLAKKIDWLHSRVRKATTRAEK----------VLLFLVIEGIYFISSFY 176
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
I M G+ YI RDE LH + N + + +
Sbjct: 177 SIGLFRLRGIMRGVCLANDYISRDELLHTRAASLLYNTMISRD----ESPSVAYIHGLFR 232
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWM 323
EA +E + + + +N EQ++Q A+R I + PLF P +
Sbjct: 233 EAVEIETLFIR-SKSRDVTMVNVGDIEQFLQATADRILKSINIPPLFGARPPNACPLSY- 290
Query: 324 SEVIDLKKEKNFFETRVTEYQQG 346
K NFFE +EY
Sbjct: 291 ----TSAKSVNFFERDNSEYVTS 309
>gi|321496611|ref|YP_004207896.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru]
gi|320332513|gb|ADW24401.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru]
gi|320332596|gb|ADW24483.1| ribonucleotide reductase small subunit [Rodent herpesvirus Peru]
Length = 307
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 56/316 (17%), Positives = 104/316 (32%), Gaps = 27/316 (8%)
Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
+ N W P ++P+ D L++ ++ K F +E LV
Sbjct: 15 HPGFLALTEETWKNRWFPYQIPLAVDAKD---VTKLSETDKEFYKFLFIFLGLAEKLVNF 71
Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
N + + + + + + Y Q E +H + I+ + Y
Sbjct: 72 N-IDELLVGIHSHDAKHYYDEQEAMENIHGKVYANILNLFFEGDKAKMRQYAHFVVGNPG 130
Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
L + K + + + + +++ EG++F + F I L
Sbjct: 131 LKAKLSWLHD----------KVREATTIAEKVLVFLLIEGIFFVSSFYSIGLLRVRGICN 180
Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
G+ YI RDE LH + N + + + EA +EI + E
Sbjct: 181 GVCLANDYISRDELLHTRAAALLYNTLVDPDRKPPVH----WIHNLFREAVDVEIRFIRE 236
Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNF 335
+G +N +++ A+R QI L L+ + P + K NF
Sbjct: 237 -RGRGVTAVNIEDIISFLKATADRMLTQIKLPILYGELAPSGCPLAF----NACVKNINF 291
Query: 336 FETRVTEYQQGAELKW 351
FE T+Y +
Sbjct: 292 FEREGTDYS-SSVTND 306
>gi|290766061|gb|ADD60039.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
Length = 340
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 56 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 111
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 165
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 166 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K + + +A +EI + P L
Sbjct: 218 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 329
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 330 TSYA-GAVVND 339
>gi|308233466|ref|ZP_07664203.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium
vaginae DSM 15829]
gi|328943412|ref|ZP_08240877.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium
vaginae DSM 15829]
gi|327491381|gb|EGF23155.1| ribonucleotide-diphosphate reductase subunit beta [Atopobium
vaginae DSM 15829]
Length = 339
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 55/355 (15%), Positives = 113/355 (31%), Gaps = 29/355 (8%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
M + + + P DK ++ E + N W+P +P
Sbjct: 1 MQSASNVQPTSQSPVDFAYADK---GCNMRAVNWNRIQDEKDLEVWNRVTQNFWLPENIP 57
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ +DL W L + +I R +++ A +A RH +
Sbjct: 58 VSNDLPSWNE---LDSSWQQLIIRTFTGLTLLDTVQATVGDVAQIRHALTDIEQANYANF 114
Query: 121 AFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178
AF AVH+ ++ + ++L E E ++ +A + Y
Sbjct: 115 AFMVAVHARSYGTVFSTLCSSEQIDEAQAWVVNNDALQKRAKALIPYYTGSD-------- 166
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
V + G Y GF L +K+ ++ + I+RD+ +H +
Sbjct: 167 -------PLKSKVAAALMPGFLLYGGFYLPFYLSARSKLPNTSDMIRLILRDKVIHNYYS 219
Query: 239 IDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQF 298
Q + + + ++++ LE AY + + A ++ +
Sbjct: 220 GYKFQQKVRKLTSDEQQTVKDFVFDLMYQLIDLEKAYLQDLYKDFDL---ADDAIRFSLY 276
Query: 299 IANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
A + +G + F E +P + + +FF + Y G +
Sbjct: 277 NAGKFLQNLGYDSPFSEQETYISPEVFAQLSARADENHDFFSGSGSSYVIGTSEE 331
>gi|114318828|gb|ABI63502.1| UL40 [Human herpesvirus 1]
gi|290766139|gb|ADD60116.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
Length = 340
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 56 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 111
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 165
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 166 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K + + +A +EI + P L
Sbjct: 218 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 329
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 330 TSYA-GAVVND 339
>gi|83642896|ref|YP_438184.1| ORF60 [Ovine herpesvirus 2]
gi|61971010|gb|AAX58095.1| ORF60 [Ovine herpesvirus 2]
gi|78127895|gb|ABB22279.1| ribonucleotide-reductase small subunit-like protein [Ovine
herpesvirus 2]
Length = 305
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 65/312 (20%), Positives = 106/312 (33%), Gaps = 36/312 (11%)
Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
++ N W P ++ + D+ K L++ E K F +E+LV N +
Sbjct: 16 FFDLTQETFQNRWFPAQINLTADV---KCLGSLSEKEVAFYKYLFTFLGMAETLVNFN-I 71
Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD---EGELF-NMYREVPSITA 157
+ + + Y Q E VH + I+ L + E F E +
Sbjct: 72 DELVAGFEIHDVKHYYCEQMAMECVHGKVYFNILNMLFKNNIAETRAFAESVLEDEPLRK 131
Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
K W +T S + + + + EG++F + F I L M
Sbjct: 132 KLQWLEGKIKTAESAAEK--------------VLIFYLIEGIFFISSFYCIGLLRVKGVM 177
Query: 218 VGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAH 277
G+ YI RDE LH + N + K + + EA +E +
Sbjct: 178 PGVCMANDYISRDELLHTRAAALLYNTVI----PQEGKPSEAWIIDLFKEAVSIEDEFIR 233
Query: 278 ETMPKGFVG-LNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEK 333
G VG +N ++++ A+R + IGL F P K
Sbjct: 234 --AKSGEVGFVNVADIRRFLEATADRLLNSIGLPVHFKSEPPKSCPLT----YTGCIKNV 287
Query: 334 NFFETRVTEYQQ 345
+FFE TEY
Sbjct: 288 SFFERESTEYST 299
>gi|222478371|gb|ACM62263.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
Length = 340
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 56 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 111
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 165
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 166 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K + + +A +EI + P L
Sbjct: 218 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 329
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 330 TSYA-GAVVND 339
>gi|9629421|ref|NP_044642.1| ribonucleotide reductase subunit 2 [Human herpesvirus 1]
gi|132622|sp|P10224|RIR2_HHV11 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
Short=R2; AltName: Full=Ribonucleotide reductase 38 kDa
subunit; AltName: Full=Ribonucleotide reductase small
subunit; Flags: Precursor
gi|59540|emb|CAA32303.1| ribonucleotide reductase small subunit [Human herpesvirus 1]
Length = 340
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 56 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 111
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 112 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 165
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 166 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K + + +A +EI + P L
Sbjct: 218 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 329
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 330 TSYA-GAVVND 339
>gi|9629310|ref|NP_044510.1| ribonucleotide reductase subunit 2 [Human herpesvirus 2]
gi|61231410|sp|P69520|RIR2_HHV23 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase 38 kDa subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|61231418|sp|P69521|RIR2_HHV2H RecName: Full=Ribonucleoside-diphosphate reductase small chain;
Short=R2; AltName: Full=Ribonucleotide reductase 38 kDa
subunit; AltName: Full=Ribonucleotide reductase small
subunit
gi|330200|gb|AAA45807.1| 38K protein [Human herpesvirus 2]
gi|1869863|emb|CAB06726.1| ribonucleotide reductase small subunit [Human herpesvirus 2]
gi|224613173|dbj|BAH24264.1| ribonucleotide reductase small subunit [Human herpesvirus 2]
gi|224613175|dbj|BAH24265.1| ribonucleotide reductase small subunit [Human herpesvirus 2]
Length = 337
Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats.
Identities = 61/307 (19%), Positives = 111/307 (36%), Gaps = 30/307 (9%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 53 NRWLETELVFVGDEED---VSKLSEGELGFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 108
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
+ Y + Q E VHS + I L + + Y + + +
Sbjct: 109 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTINHPAIRVKVDWLEA--- 165
Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
+ + + + + F+ ++ EG++F FA I L N + + I RDE
Sbjct: 166 -------RVRECDSIPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLISRDE 218
Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA-- 289
++H + N K + + EA +EI + P L+
Sbjct: 219 AVHTTASCYIYNNYL----GGHAKPEAARVYRLFREAVDIEIGFIRSQAPTDSSILSPGA 274
Query: 290 -PSCEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
+ E Y++F A+R I ++PL+ P ++ K NFFE R T Y
Sbjct: 275 LAAIENYVRFSADRLLGLIHMQPLYSAPAPDASFPLS----LMSTDKHTNFFECRSTSYA 330
Query: 345 QGAELKW 351
GA +
Sbjct: 331 -GAVVND 336
>gi|1172944|sp|P06474|RIR2_HHV1K RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase 38 kDa subunit;
AltName: Full=Ribonucleotide reductase small subunit
gi|807641|gb|AAA66436.1| unknown protein [Human herpesvirus 1]
Length = 340
Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats.
Identities = 65/311 (20%), Positives = 112/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 56 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 111
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E HS + I L + E P+I AK +W
Sbjct: 112 DILHYYVEQECIEVAHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 165
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 166 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 217
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K + + +A +EI + P L
Sbjct: 218 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 273
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 274 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 329
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 330 TSYA-GAVVND 339
>gi|30960729|gb|AAP39158.1| UL40 [Human herpesvirus 1]
Length = 307
Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 114/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 23 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + ++ + F+ ++ EG++F FA I L N + + I
Sbjct: 133 --------LEARVRECAYVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K + + +A +EI + P L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240
Query: 288 NA---PSCEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPL----SLMSTDKHTNFFECRS 296
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 297 TSYA-GAVVND 306
>gi|12642668|gb|AAK00340.1| ribonucleotide reductase small subunit [Bovine herpesvirus 2]
Length = 313
Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats.
Identities = 67/307 (21%), Positives = 117/307 (38%), Gaps = 30/307 (9%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ +E+ D + L+ E + F ++++ LV + +
Sbjct: 29 NRWLESELVFAGDEED---VDRLSPGELDFYRFLFTFLSAADDLVTEE-LGRLSGLFYQK 84
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
+ Y + Q E VHS + I L ++ +Y + + + +
Sbjct: 85 DILHYYVEQECIEVVHSRVYSIIQMVLFKNDDAARRIYVARTVGHPAIHAKVDWLEA--- 141
Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
+ D + + F+ ++ EG++F FA I L +N + + I RDE
Sbjct: 142 -------RVRDCPSVPEKFILMILIEGIFFAASFAAIAFLRTSNLLKVTCQSNDLISRDE 194
Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN--- 288
++H + N +P +Q + EA +EIA+ MP+ L+
Sbjct: 195 AVHTTASCCIYNNYIGAHPKPPPTRVRQ----LFLEAVDIEIAFIRAKMPRDGQVLSESA 250
Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKY---TEN-PFPWMSEVIDLKKEKNFFETRVTEYQ 344
S E Y++F A+R IG +PLF N P ++ K NFFE R T Y
Sbjct: 251 VASIENYVRFSADRLLCLIGDQPLFNAPPPDANFPL----RLMSTDKHTNFFECRSTAYA 306
Query: 345 QGAELKW 351
GA +
Sbjct: 307 -GAVVND 312
>gi|7330057|gb|AAF60046.1|AF210726_67 small ribonuclease reductase [Rhesus monkey rhadinovirus H26-95]
Length = 304
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 62/323 (19%), Positives = 107/323 (33%), Gaps = 28/323 (8%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
D L + N W P+++ + +D L+ +R +
Sbjct: 2 ESPDRF-LYASDHPGFLALTQETWQNRWFPSQISLHEDSD---EVRLLSPTDREFYQFLF 57
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146
F +ESLV N + + + SN + Y Q E +H + I+
Sbjct: 58 TFLGMAESLVNFN-IEDLVKEFSNHDVTHYYAEQVAMENIHGKVYANILNLFFGGNRGDL 116
Query: 147 NMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA 206
+Y + A + + + + T K + ++V EG++F + F
Sbjct: 117 MIYAKKIVEDATLAKKIDWLHSRVRKATTRAEK----------VLLFLVIEGIYFISSFY 166
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLH 266
I M G+ YI RDE LH + N + + +
Sbjct: 167 SIGLFRLRGIMRGVCLANDYISRDELLHTRAASLLYNTMISRD----ESPSVAYIHGLFR 222
Query: 267 EATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWM 323
EA +E + + + +N EQ++Q A+R I + PLF P +
Sbjct: 223 EAVEIETLFIR-SKSRDVTMVNVGDIEQFLQATADRILKSINIPPLFGARPPNACPLSY- 280
Query: 324 SEVIDLKKEKNFFETRVTEYQQG 346
K NFFE +EY
Sbjct: 281 ----TSAKSVNFFERDNSEYVTS 299
>gi|32453719|ref|NP_861928.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
RB69]
gi|32350538|gb|AAP76137.1| NrdB aerobic NDP reductase, small subunit [Enterobacteria phage
RB69]
Length = 390
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 61/359 (16%), Positives = 128/359 (35%), Gaps = 39/359 (10%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
+S + ++V+V ++ M ++ +E+ + + W P EV + D A
Sbjct: 1 MSTVFN-TQQVDVLNEPMFFGSGLGLARYDIQRHKVFEELIEILSFFWRPEEVNLMLDSA 59
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ N L ++ + NL + + +S+ + +S+P ++ F E +
Sbjct: 60 QF---NKLPQFQQDICTNNLKYQSLLDSIQGRAPSAVLMALISDPSLDTWVATWTFSETI 116
Query: 127 HSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFL 186
HS ++ +I+ +L D ++F+ +I +A +Y + + E
Sbjct: 117 HSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGKYYDDVLVKTRNWENAKEVYECS 176
Query: 187 ---------------------------QDLFVFYVVFEGMWFYTGFAQILSLGRAN-KMV 218
E + FY FA + + M
Sbjct: 177 IGSCQQNDIEMYEEIMFNAKRDLMKSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIME 236
Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT----MLHEATLLEIA 274
G A+ ++I RDE LHL + + + + + L + +
Sbjct: 237 GNAKIMKFIARDEQLHLRVLSTLSVNFNLVLMAMSGFKLLKNVNKKQLTFLWKLIVKYKE 296
Query: 275 YAHETMPKGF-VGLNAPSCEQYMQFIANRRCHQIGLE-PLFKY-TENPFPWMSEVIDLK 330
+A G G+N S ++ ++ R Q GL P+ T++P+PW+ E ++
Sbjct: 297 WAAHLFKDGTCPGINTQSMCAFVDYLTVSRMKQCGLPCPITDAPTKHPYPWIREYLNSD 355
>gi|30960831|gb|AAP39226.1| UL40 [Human herpesvirus 1]
Length = 307
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 114/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 23 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K ++ + +A +EI + P L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPERVYGLFRQAVEIEIGFIRSQAPTDSHIL 240
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 241 SPAALVAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 297 TSYA-GAVVND 306
>gi|30960813|gb|AAP39214.1| UL40 [Human herpesvirus 1]
gi|30960819|gb|AAP39218.1| UL40 [Human herpesvirus 1]
Length = 307
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 114/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 23 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K ++ + +A +EI + P L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPERVYGLFRQAVEIEIGFIRSQAPTDSHIL 240
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 297 TSYA-GAVVND 306
>gi|33340378|gb|AAQ14729.1|AF320576_197 putative ribonucleoside diphosphate reductase beta chain
[Enterobacteria phage Felix 01]
Length = 377
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 59/346 (17%), Positives = 131/346 (37%), Gaps = 22/346 (6%)
Query: 8 SPIQAGEKRVN---VDDKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+ ++ ++R N ++ + L L Y +E Y W E P +
Sbjct: 8 TSLRNDKERRNHAMINQHPIFLGGERKTFDSLNKHYPKIFELYKQQKAQDWSEDEFPFEQ 67
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
++S ++ L + +++ VA ++ A +S+ +++Q+
Sbjct: 68 SRLDFESVPA---SMSGVMLEILKWQWEADTQVAKSLAFAFAPFISDDIYATAIMKQSEI 124
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFT-------T 176
E +H+ T+ I+ + + + + ++ + + + L
Sbjct: 125 ENLHALTYSEIVRQCIKNPETILDEINQNVAVQDRLKTVNRVLEELLDEGINYRLSYVRD 184
Query: 177 GTKDADQEFLQDLFVFYVVF----EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
D D + + + EG+ F FA +L +K GIA+ Q IM DE
Sbjct: 185 SLLDKDPLHFHKVILKGLFAVTALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEI 244
Query: 233 LHLNFGIDVINQIKIENPHLW-TKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNA 289
LH I+V+ + ++ ++ + + +L E E +++ +G VGLN
Sbjct: 245 LHTKIDIEVLKETLRDDEWQKAFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNT 304
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTEN-PFPWMSEVIDLKKEKN 334
+++ + A G+ F + P +M + +++ KE+N
Sbjct: 305 KLLHEWVYYNAAPLYDMFGIPRDFVAPKEPPLKYMIKKMEIDKEQN 350
>gi|38707874|ref|NP_944994.1| Ribonucleoside triphosphate reductase, beta chain [Enterobacteria
phage Felix 01]
gi|238801854|ref|YP_002922904.1| ribonucleoside triphosphate reductase, beta chain [Enterobacteria
phage WV8]
gi|33340477|gb|AAQ14828.1| putative ribonucleoside diphosphate reductase beta chain
[Enterobacteria phage Felix 01]
gi|216263067|gb|ACJ71935.1| ribonucleoside triphosphate reductase, beta chain [Enterobacteria
phage WV8]
Length = 357
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 57/325 (17%), Positives = 121/325 (37%), Gaps = 18/325 (5%)
Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
L L Y +E Y W E P + ++S ++
Sbjct: 9 LGGERKTFDSLNKHYPKIFELYKQQKAQDWSEDEFPFEQSRLDFESVPA---SMSGVMLE 65
Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
L + +++ VA ++ A +S+ +++Q+ E +H+ T+ I+ +
Sbjct: 66 ILKWQWEADTQVAKSLAFAFAPFISDDIYATAIMKQSEIENLHALTYSEIVRQCIKNPET 125
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEFLQDLFVFYVVF- 196
+ + + ++ + + + L D D + + +
Sbjct: 126 ILDEINQNVAVQDRLKTVNRVLEELLDEGINYRLSYVRDSLLDKDPLHFHKVILKGLFAV 185
Query: 197 ---EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG+ F FA +L +K GIA+ Q IM DE LH I+V+ + ++
Sbjct: 186 TALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKETLRDDEWQK 245
Query: 254 -TKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLE 310
++ + + +L E E +++ +G VGLN +++ + A G+
Sbjct: 246 AFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYNAAPLYDMFGIP 305
Query: 311 PLFKYTEN-PFPWMSEVIDLKKEKN 334
F + P +M + +++ KE+N
Sbjct: 306 RDFVAPKEPPLKYMIKKMEIDKEQN 330
>gi|269975299|gb|ACZ55523.1| ribonucleoside diphosphate reductase beta chain [Staphylococcus
phage SA1]
Length = 357
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 57/325 (17%), Positives = 121/325 (37%), Gaps = 18/325 (5%)
Query: 25 LNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
L L Y +E Y W E P + ++S ++
Sbjct: 9 LGGERKTFDSLNKHYPKIFELYKQQKAQDWSEDEFPFEQSRLDFESVPA---SMSGVMLE 65
Query: 85 NLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE 144
L + +++ VA ++ A +S+ +++Q+ E +H+ T+ I+ +
Sbjct: 66 ILKWQWEADTQVAKSLAFAFAPFISDDIYATAIMKQSEIENLHALTYSEIVRQCIKNPET 125
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFT-------TGTKDADQEFLQDLFVFYVVF- 196
+ + + ++ + + + L D D + + +
Sbjct: 126 ILDEINQNIAVQDRLKTVNRVLEELLDEGINYRLSYVRDSLLDKDPLHFHKVILKGLFAV 185
Query: 197 ---EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
EG+ F FA +L +K GIA+ Q IM DE LH I+V+ + ++
Sbjct: 186 TALEGISFMASFACTFALDAQDKFQGIAQAVQKIMLDEILHTKIDIEVLKETLRDDEWQK 245
Query: 254 -TKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLE 310
++ + + +L E E +++ +G VGLN +++ + A G+
Sbjct: 246 AFQQILPEIKVILDEVVESEEKWSYYIFSEGRAVVGLNTKLLHEWVYYNAAPLYDMFGIP 305
Query: 311 PLFKYTEN-PFPWMSEVIDLKKEKN 334
F + P +M + +++ KE+N
Sbjct: 306 RDFVAPKEPPLKYMIKKMEIDKEQN 330
>gi|30960492|gb|AAP39000.1| UL40 [Human herpesvirus 1]
Length = 307
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 65/311 (20%), Positives = 112/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 23 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + K + + +A +EI + P L
Sbjct: 185 SRDEAVHTTASCYIYTNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 297 TSYA-GAVVND 306
>gi|218296962|ref|ZP_03497648.1| ribonucleotide reductase [Thermus aquaticus Y51MC23]
gi|218242665|gb|EED09201.1| ribonucleotide reductase [Thermus aquaticus Y51MC23]
Length = 323
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 55/315 (17%), Positives = 117/315 (37%), Gaps = 18/315 (5%)
Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
P +Y + +++W+ TE D+ + +++R+L A E L
Sbjct: 11 PYEYPGLLRFRDAIRHSYWVHTEFSYSADVQD---HALAEPPVQSLVERSLLAIAQVE-L 66
Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
+Y PE + + A E H++ + +++ LGL+ F Y E +
Sbjct: 67 SVKLFWARVYDRFPKPEVAEVGMTFAESEVRHANAYAHLLDLLGLEGR--FARYLEEATP 124
Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA- 214
+ +E+ L +F E + ++ F +++L R
Sbjct: 125 LRDRA-------GALEGVLARSKNASLEEYALSLLLFSAFVEHISLFSQFYALMALNRRA 177
Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
N+ GIA + ++E++H FG++++ ++ E P L+ + F ++ E E A
Sbjct: 178 NRFKGIANAVEATSKEENIHGLFGVELLRLLREERPELFGEAFVEEVLRAAQELFRAEEA 237
Query: 275 YAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVIDLK 330
+ ++++ N+ GL F+ + W + +
Sbjct: 238 LVDWIFAGGDTPWVRGEEVLEFVKDRYNQVLALHGLPGPFQVRDEVLKDTAWFALELLAD 297
Query: 331 KEKNFFETRVTEYQQ 345
K+ +FF R Y +
Sbjct: 298 KDVDFFNKRSVAYAR 312
>gi|30960429|gb|AAP38958.1| UL40 [Human herpesvirus 1]
gi|30960468|gb|AAP38984.1| UL40 [Human herpesvirus 1]
Length = 307
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 23 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K + + +A +EI + P L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 241 SPAALVAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 297 TSYA-GAVVND 306
>gi|30960231|gb|AAP38826.1| UL40 [Human herpesvirus 1]
gi|30960234|gb|AAP38828.1| UL40 [Human herpesvirus 1]
gi|30960237|gb|AAP38830.1| UL40 [Human herpesvirus 1]
gi|30960240|gb|AAP38832.1| UL40 [Human herpesvirus 1]
gi|30960243|gb|AAP38834.1| UL40 [Human herpesvirus 1]
gi|30960246|gb|AAP38836.1| UL40 [Human herpesvirus 1]
gi|30960249|gb|AAP38838.1| UL40 [Human herpesvirus 1]
gi|30960252|gb|AAP38840.1| UL40 [Human herpesvirus 1]
gi|30960255|gb|AAP38842.1| UL40 [Human herpesvirus 1]
gi|30960258|gb|AAP38844.1| UL40 [Human herpesvirus 1]
gi|30960261|gb|AAP38846.1| UL40 [Human herpesvirus 1]
gi|30960264|gb|AAP38848.1| UL40 [Human herpesvirus 1]
gi|30960267|gb|AAP38850.1| UL40 [Human herpesvirus 1]
gi|30960270|gb|AAP38852.1| UL40 [Human herpesvirus 1]
gi|30960273|gb|AAP38854.1| UL40 [Human herpesvirus 1]
gi|30960276|gb|AAP38856.1| UL40 [Human herpesvirus 1]
gi|30960279|gb|AAP38858.1| UL40 [Human herpesvirus 1]
gi|30960282|gb|AAP38860.1| UL40 [Human herpesvirus 1]
gi|30960285|gb|AAP38862.1| UL40 [Human herpesvirus 1]
gi|30960288|gb|AAP38864.1| UL40 [Human herpesvirus 1]
gi|30960291|gb|AAP38866.1| UL40 [Human herpesvirus 1]
gi|30960294|gb|AAP38868.1| UL40 [Human herpesvirus 1]
gi|30960297|gb|AAP38870.1| UL40 [Human herpesvirus 1]
gi|30960300|gb|AAP38872.1| UL40 [Human herpesvirus 1]
gi|30960303|gb|AAP38874.1| UL40 [Human herpesvirus 1]
gi|30960306|gb|AAP38876.1| UL40 [Human herpesvirus 1]
gi|30960309|gb|AAP38878.1| UL40 [Human herpesvirus 1]
gi|30960312|gb|AAP38880.1| UL40 [Human herpesvirus 1]
gi|30960315|gb|AAP38882.1| UL40 [Human herpesvirus 1]
gi|30960318|gb|AAP38884.1| UL40 [Human herpesvirus 1]
gi|30960321|gb|AAP38886.1| UL40 [Human herpesvirus 1]
gi|30960324|gb|AAP38888.1| UL40 [Human herpesvirus 1]
gi|30960327|gb|AAP38890.1| UL40 [Human herpesvirus 1]
gi|30960330|gb|AAP38892.1| UL40 [Human herpesvirus 1]
gi|30960333|gb|AAP38894.1| UL40 [Human herpesvirus 1]
gi|30960336|gb|AAP38896.1| UL40 [Human herpesvirus 1]
gi|30960339|gb|AAP38898.1| UL40 [Human herpesvirus 1]
gi|30960342|gb|AAP38900.1| UL40 [Human herpesvirus 1]
gi|30960345|gb|AAP38902.1| UL40 [Human herpesvirus 1]
gi|30960348|gb|AAP38904.1| UL40 [Human herpesvirus 1]
gi|30960351|gb|AAP38906.1| UL40 [Human herpesvirus 1]
gi|30960354|gb|AAP38908.1| UL40 [Human herpesvirus 1]
gi|30960357|gb|AAP38910.1| UL40 [Human herpesvirus 1]
gi|30960360|gb|AAP38912.1| UL40 [Human herpesvirus 1]
gi|30960363|gb|AAP38914.1| UL40 [Human herpesvirus 1]
gi|30960366|gb|AAP38916.1| UL40 [Human herpesvirus 1]
gi|30960369|gb|AAP38918.1| UL40 [Human herpesvirus 1]
gi|30960372|gb|AAP38920.1| UL40 [Human herpesvirus 1]
gi|30960375|gb|AAP38922.1| UL40 [Human herpesvirus 1]
gi|30960378|gb|AAP38924.1| UL40 [Human herpesvirus 1]
gi|30960381|gb|AAP38926.1| UL40 [Human herpesvirus 1]
gi|30960384|gb|AAP38928.1| UL40 [Human herpesvirus 1]
gi|30960387|gb|AAP38930.1| UL40 [Human herpesvirus 1]
gi|30960390|gb|AAP38932.1| UL40 [Human herpesvirus 1]
gi|30960393|gb|AAP38934.1| UL40 [Human herpesvirus 1]
gi|30960396|gb|AAP38936.1| UL40 [Human herpesvirus 1]
gi|30960399|gb|AAP38938.1| UL40 [Human herpesvirus 1]
gi|30960402|gb|AAP38940.1| UL40 [Human herpesvirus 1]
gi|30960405|gb|AAP38942.1| UL40 [Human herpesvirus 1]
gi|30960408|gb|AAP38944.1| UL40 [Human herpesvirus 1]
gi|30960411|gb|AAP38946.1| UL40 [Human herpesvirus 1]
gi|30960414|gb|AAP38948.1| UL40 [Human herpesvirus 1]
gi|30960417|gb|AAP38950.1| UL40 [Human herpesvirus 1]
gi|30960432|gb|AAP38960.1| UL40 [Human herpesvirus 1]
gi|30960435|gb|AAP38962.1| UL40 [Human herpesvirus 1]
gi|30960438|gb|AAP38964.1| UL40 [Human herpesvirus 1]
gi|30960441|gb|AAP38966.1| UL40 [Human herpesvirus 1]
gi|30960444|gb|AAP38968.1| UL40 [Human herpesvirus 1]
gi|30960447|gb|AAP38970.1| UL40 [Human herpesvirus 1]
gi|30960450|gb|AAP38972.1| UL40 [Human herpesvirus 1]
gi|30960453|gb|AAP38974.1| UL40 [Human herpesvirus 1]
gi|30960456|gb|AAP38976.1| UL40 [Human herpesvirus 1]
gi|30960459|gb|AAP38978.1| UL40 [Human herpesvirus 1]
gi|30960462|gb|AAP38980.1| UL40 [Human herpesvirus 1]
gi|30960471|gb|AAP38986.1| UL40 [Human herpesvirus 1]
gi|30960474|gb|AAP38988.1| UL40 [Human herpesvirus 1]
gi|30960477|gb|AAP38990.1| UL40 [Human herpesvirus 1]
gi|30960480|gb|AAP38992.1| UL40 [Human herpesvirus 1]
gi|30960483|gb|AAP38994.1| UL40 [Human herpesvirus 1]
gi|30960486|gb|AAP38996.1| UL40 [Human herpesvirus 1]
gi|30960489|gb|AAP38998.1| UL40 [Human herpesvirus 1]
gi|30960495|gb|AAP39002.1| UL40 [Human herpesvirus 1]
gi|30960498|gb|AAP39004.1| UL40 [Human herpesvirus 1]
gi|30960501|gb|AAP39006.1| UL40 [Human herpesvirus 1]
gi|30960504|gb|AAP39008.1| UL40 [Human herpesvirus 1]
gi|30960507|gb|AAP39010.1| UL40 [Human herpesvirus 1]
gi|30960510|gb|AAP39012.1| UL40 [Human herpesvirus 1]
gi|30960513|gb|AAP39014.1| UL40 [Human herpesvirus 1]
gi|30960516|gb|AAP39016.1| UL40 [Human herpesvirus 1]
gi|30960519|gb|AAP39018.1| UL40 [Human herpesvirus 1]
gi|30960522|gb|AAP39020.1| UL40 [Human herpesvirus 1]
gi|30960528|gb|AAP39024.1| UL40 [Human herpesvirus 1]
gi|30960531|gb|AAP39026.1| UL40 [Human herpesvirus 1]
gi|30960534|gb|AAP39028.1| UL40 [Human herpesvirus 1]
gi|30960537|gb|AAP39030.1| UL40 [Human herpesvirus 1]
gi|30960540|gb|AAP39032.1| UL40 [Human herpesvirus 1]
gi|30960543|gb|AAP39034.1| UL40 [Human herpesvirus 1]
gi|30960546|gb|AAP39036.1| UL40 [Human herpesvirus 1]
gi|30960549|gb|AAP39038.1| UL40 [Human herpesvirus 1]
gi|30960552|gb|AAP39040.1| UL40 [Human herpesvirus 1]
gi|30960555|gb|AAP39042.1| UL40 [Human herpesvirus 1]
gi|30960558|gb|AAP39044.1| UL40 [Human herpesvirus 1]
gi|30960561|gb|AAP39046.1| UL40 [Human herpesvirus 1]
gi|30960564|gb|AAP39048.1| UL40 [Human herpesvirus 1]
gi|30960567|gb|AAP39050.1| UL40 [Human herpesvirus 1]
gi|30960570|gb|AAP39052.1| UL40 [Human herpesvirus 1]
gi|30960573|gb|AAP39054.1| UL40 [Human herpesvirus 1]
gi|30960576|gb|AAP39056.1| UL40 [Human herpesvirus 1]
gi|30960579|gb|AAP39058.1| UL40 [Human herpesvirus 1]
gi|30960582|gb|AAP39060.1| UL40 [Human herpesvirus 1]
gi|30960585|gb|AAP39062.1| UL40 [Human herpesvirus 1]
gi|30960588|gb|AAP39064.1| UL40 [Human herpesvirus 1]
gi|30960591|gb|AAP39066.1| UL40 [Human herpesvirus 1]
gi|30960594|gb|AAP39068.1| UL40 [Human herpesvirus 1]
gi|30960597|gb|AAP39070.1| UL40 [Human herpesvirus 1]
gi|30960600|gb|AAP39072.1| UL40 [Human herpesvirus 1]
gi|30960603|gb|AAP39074.1| UL40 [Human herpesvirus 1]
gi|30960606|gb|AAP39076.1| UL40 [Human herpesvirus 1]
gi|30960609|gb|AAP39078.1| UL40 [Human herpesvirus 1]
gi|30960612|gb|AAP39080.1| UL40 [Human herpesvirus 1]
gi|30960615|gb|AAP39082.1| UL40 [Human herpesvirus 1]
gi|30960618|gb|AAP39084.1| UL40 [Human herpesvirus 1]
gi|30960621|gb|AAP39086.1| UL40 [Human herpesvirus 1]
gi|30960624|gb|AAP39088.1| UL40 [Human herpesvirus 1]
gi|30960627|gb|AAP39090.1| UL40 [Human herpesvirus 1]
gi|30960630|gb|AAP39092.1| UL40 [Human herpesvirus 1]
gi|30960633|gb|AAP39094.1| UL40 [Human herpesvirus 1]
gi|30960636|gb|AAP39096.1| UL40 [Human herpesvirus 1]
gi|30960639|gb|AAP39098.1| UL40 [Human herpesvirus 1]
gi|30960642|gb|AAP39100.1| UL40 [Human herpesvirus 1]
gi|30960645|gb|AAP39102.1| UL40 [Human herpesvirus 1]
gi|30960648|gb|AAP39104.1| UL40 [Human herpesvirus 1]
gi|30960651|gb|AAP39106.1| UL40 [Human herpesvirus 1]
gi|30960657|gb|AAP39110.1| UL40 [Human herpesvirus 1]
gi|30960660|gb|AAP39112.1| UL40 [Human herpesvirus 1]
gi|30960663|gb|AAP39114.1| UL40 [Human herpesvirus 1]
gi|30960666|gb|AAP39116.1| UL40 [Human herpesvirus 1]
gi|30960669|gb|AAP39118.1| UL40 [Human herpesvirus 1]
gi|30960672|gb|AAP39120.1| UL40 [Human herpesvirus 1]
gi|30960675|gb|AAP39122.1| UL40 [Human herpesvirus 1]
gi|30960678|gb|AAP39124.1| UL40 [Human herpesvirus 1]
gi|30960681|gb|AAP39126.1| UL40 [Human herpesvirus 1]
gi|30960684|gb|AAP39128.1| UL40 [Human herpesvirus 1]
gi|30960687|gb|AAP39130.1| UL40 [Human herpesvirus 1]
gi|30960690|gb|AAP39132.1| UL40 [Human herpesvirus 1]
gi|30960693|gb|AAP39134.1| UL40 [Human herpesvirus 1]
gi|30960696|gb|AAP39136.1| UL40 [Human herpesvirus 1]
gi|30960699|gb|AAP39138.1| UL40 [Human herpesvirus 1]
gi|30960702|gb|AAP39140.1| UL40 [Human herpesvirus 1]
gi|30960711|gb|AAP39146.1| UL40 [Human herpesvirus 1]
gi|30960714|gb|AAP39148.1| UL40 [Human herpesvirus 1]
gi|30960717|gb|AAP39150.1| UL40 [Human herpesvirus 1]
gi|30960720|gb|AAP39152.1| UL40 [Human herpesvirus 1]
gi|30960723|gb|AAP39154.1| UL40 [Human herpesvirus 1]
gi|30960726|gb|AAP39156.1| UL40 [Human herpesvirus 1]
gi|30960732|gb|AAP39160.1| UL40 [Human herpesvirus 1]
gi|30960735|gb|AAP39162.1| UL40 [Human herpesvirus 1]
gi|30960738|gb|AAP39164.1| UL40 [Human herpesvirus 1]
gi|30960741|gb|AAP39166.1| UL40 [Human herpesvirus 1]
gi|30960744|gb|AAP39168.1| UL40 [Human herpesvirus 1]
gi|30960747|gb|AAP39170.1| UL40 [Human herpesvirus 1]
gi|30960750|gb|AAP39172.1| UL40 [Human herpesvirus 1]
gi|30960756|gb|AAP39176.1| UL40 [Human herpesvirus 1]
gi|30960759|gb|AAP39178.1| UL40 [Human herpesvirus 1]
gi|30960762|gb|AAP39180.1| UL40 [Human herpesvirus 1]
gi|30960765|gb|AAP39182.1| UL40 [Human herpesvirus 1]
gi|30960768|gb|AAP39184.1| UL40 [Human herpesvirus 1]
gi|30960771|gb|AAP39186.1| UL40 [Human herpesvirus 1]
gi|30960774|gb|AAP39188.1| UL40 [Human herpesvirus 1]
gi|30960780|gb|AAP39192.1| UL40 [Human herpesvirus 1]
gi|30960783|gb|AAP39194.1| UL40 [Human herpesvirus 1]
gi|30960786|gb|AAP39196.1| UL40 [Human herpesvirus 1]
gi|30960789|gb|AAP39198.1| UL40 [Human herpesvirus 1]
gi|30960792|gb|AAP39200.1| UL40 [Human herpesvirus 1]
gi|30960795|gb|AAP39202.1| UL40 [Human herpesvirus 1]
gi|30960798|gb|AAP39204.1| UL40 [Human herpesvirus 1]
gi|30960801|gb|AAP39206.1| UL40 [Human herpesvirus 1]
gi|30960804|gb|AAP39208.1| UL40 [Human herpesvirus 1]
gi|30960807|gb|AAP39210.1| UL40 [Human herpesvirus 1]
gi|30960810|gb|AAP39212.1| UL40 [Human herpesvirus 1]
gi|30960816|gb|AAP39216.1| UL40 [Human herpesvirus 1]
gi|30960822|gb|AAP39220.1| UL40 [Human herpesvirus 1]
gi|30960825|gb|AAP39222.1| UL40 [Human herpesvirus 1]
gi|30960828|gb|AAP39224.1| UL40 [Human herpesvirus 1]
gi|30960834|gb|AAP39228.1| UL40 [Human herpesvirus 1]
gi|30960840|gb|AAP39232.1| UL40 [Human herpesvirus 1]
gi|30960843|gb|AAP39234.1| UL40 [Human herpesvirus 1]
gi|30960846|gb|AAP39236.1| UL40 [Human herpesvirus 1]
gi|30960849|gb|AAP39238.1| UL40 [Human herpesvirus 1]
gi|30960852|gb|AAP39240.1| UL40 [Human herpesvirus 1]
gi|30960855|gb|AAP39242.1| UL40 [Human herpesvirus 1]
gi|30960858|gb|AAP39244.1| UL40 [Human herpesvirus 1]
Length = 307
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 23 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K + + +A +EI + P L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 297 TSYA-GAVVND 306
>gi|30960705|gb|AAP39142.1| UL40 [Human herpesvirus 1]
gi|30960777|gb|AAP39190.1| UL40 [Human herpesvirus 1]
Length = 307
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 23 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 79 DIIHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K + + +A +EI + P L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 297 TSYA-GAVVND 306
>gi|30960420|gb|AAP38952.1| UL40 [Human herpesvirus 1]
gi|30960423|gb|AAP38954.1| UL40 [Human herpesvirus 1]
gi|30960426|gb|AAP38956.1| UL40 [Human herpesvirus 1]
gi|30960465|gb|AAP38982.1| UL40 [Human herpesvirus 1]
gi|30960525|gb|AAP39022.1| UL40 [Human herpesvirus 1]
Length = 307
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 23 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K + + +A +EI + P L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----SGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 297 TSYA-GAVVND 306
>gi|30960654|gb|AAP39108.1| UL40 [Human herpesvirus 1]
Length = 307
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 23 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-MGGLSGLFEQK 78
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K + + +A +EI + P L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 297 TSYA-GAVVND 306
>gi|30960708|gb|AAP39144.1| UL40 [Human herpesvirus 1]
Length = 307
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 66/311 (21%), Positives = 113/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 23 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K + + +A +EI + P L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 297 TSYA-GAVVND 306
>gi|332672470|ref|YP_004421714.1| Ribonucleotide reductase, small subunit [Campylobacter phage
NCTC12673]
gi|327493647|gb|AEA86506.1| Ribonucleotide reductase, small subunit [Campylobacter phage
NCTC12673]
Length = 378
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 58/314 (18%), Positives = 122/314 (38%), Gaps = 24/314 (7%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGW-----AWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ ++ Q +Y W W P E+ M + KS
Sbjct: 11 DRSKEKFFFGEYSGFQ----RYDWYSHNQLESLDRKQQAQLWFPEEISM---IHEPKSFI 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + + IK NL F +S + + +++ L QA+ E +HS ++
Sbjct: 64 ELPEHNQRQIKANLTFQTLMDSGQNRGLDNILIPLVTSSGLEGCLKTQAYFEYIHSRSYS 123
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVF 192
+II S+ + ++F+ Y E P I + N + ++L D ++ + + +
Sbjct: 124 HIIKSVFPNPTDVFDEYCEYPEIKTRINDEIDTYESLEGS---LEENDENKLKILEACLR 180
Query: 193 YVVFEGMWFYTGFAQILSLGRA----NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
EG+ FY F + + NK+ + + + I DE +HL ++ ++ E
Sbjct: 181 IQFLEGVKFYVSFLTTYMINKYSAGGNKIPNLTKIIKLINNDEDIHLVIFSFILKTLRSE 240
Query: 249 NPHLWTKEFQQ----KSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRR 303
++ F K+R + + E+ +A + G GL + + +++F + R
Sbjct: 241 QHQGFSHLFDDSLSRKARKIAKKVYQDELEWAKYLLSMGPIPGLTIENIDGFLKFFVDDR 300
Query: 304 CHQIGLEPLFKYTE 317
+ G +P++ +
Sbjct: 301 LKKCGFQPIWNAPK 314
>gi|159146681|gb|ABW90785.1| ribonucleotide reductase subunit 2 [Leporid herpesvirus 4]
Length = 316
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/307 (20%), Positives = 113/307 (36%), Gaps = 30/307 (9%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ +E+ D + L+ +E + F ++++ LV + + S
Sbjct: 32 NRWLESELVFSGDERD---VDKLSPEELDFYRFLFTFLSAADDLVTEE-LGRLSSLFSQK 87
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
+ Y + Q E VHS + I L + Y ++ +++ +
Sbjct: 88 DILHYYVEQECIEVVHSRVYSIIQMVLFKSDETARRNYVANTVHSSAIQPKVRWLEA--- 144
Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
+ D + + F+ ++ EG++F FA I L N + + I RDE
Sbjct: 145 -------RVRDCPSVPEKFILMILIEGIFFAASFAAIAFLRTHNILKVTCQSNDLISRDE 197
Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG---FVGLN 288
++H + N + ++ +Q + A +EIA+ P G
Sbjct: 198 AVHTTASCCLYNNYLGQYAKPPSERIKQ----LFSNAVEIEIAFIKAKAPANSRILDGAA 253
Query: 289 APSCEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
+ E Y++F A+R IG LF P ++ +K NFFE R T Y
Sbjct: 254 IAAIESYVRFSADRLLKLIGEPALFDEPPPNDGFPL----RLMSTEKHTNFFECRSTAYA 309
Query: 345 QGAELKW 351
GA +
Sbjct: 310 -GAVVND 315
>gi|30960753|gb|AAP39174.1| UL40 [Human herpesvirus 1]
Length = 307
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 67/311 (21%), Positives = 114/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 23 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I AK +W
Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRAKVDW------ 132
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + I + I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVICQSNDLI 184
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K + + +A +EI + P L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 297 TSYA-GAVVND 306
>gi|30960837|gb|AAP39230.1| UL40 [Human herpesvirus 1]
Length = 307
Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 65/311 (20%), Positives = 112/311 (36%), Gaps = 38/311 (12%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ TE+ D + L++ E + F ++++ LV N + +
Sbjct: 23 NRWLETELVFVGDEED---VSKLSEGELSFYRFLFAFLSAADDLVTEN-LGGLSGLFEQK 78
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLD----EGELFNMYREVPSITAKANWALQYTQ 167
+ Y + Q E VHS + I L + E P+I K +W
Sbjct: 79 DILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARREYVAGTINHPAIRTKVDW------ 132
Query: 168 TLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYI 227
+ + + + F+ ++ EG++F FA I L N + + I
Sbjct: 133 --------LEARVRECASVPEKFILMILIEGIFFAASFAAIAYLRTNNLLRVTCQSNDLI 184
Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287
RDE++H + N K + + +A +EI + P L
Sbjct: 185 SRDEAVHTTASCYIYNNYL----GGHAKPPPDRVYGLFRQAVEIEIGFIRSQAPTDSHIL 240
Query: 288 NAPS---CEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRV 340
+ + E Y++F A+R I ++PLF P ++ K NFFE R
Sbjct: 241 SPAALAAIENYVRFSADRLLGLIHMKPLFSAPPPDASFPLS----LMSTDKHTNFFECRS 296
Query: 341 TEYQQGAELKW 351
T Y GA +
Sbjct: 297 TSYA-GAVVND 306
>gi|70921511|ref|XP_734071.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56506464|emb|CAH78308.1| hypothetical protein PC000956.02.0 [Plasmodium chabaudi chabaudi]
Length = 87
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
+ ++P +G+N+ QY++F+A+R +G +F +++NPF WM +I L+ + N
Sbjct: 1 FLVWSLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVF-HSKNPFSWMD-LISLQGKTN 58
Query: 335 FFETRVTEYQQGAEL 349
FFE RV +YQ+ +
Sbjct: 59 FFEKRVADYQKSGVM 73
>gi|67592960|ref|XP_665685.1| ribonucleotide reductase small subunit [Cryptosporidium hominis
TU502]
gi|54656484|gb|EAL35456.1| ribonucleotide reductase small subunit [Cryptosporidium hominis]
Length = 369
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 44/323 (13%), Positives = 96/323 (29%), Gaps = 31/323 (9%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
++ +L L P+KY W Y + W + +D + +
Sbjct: 11 QQKNESILLDNPFRWVLFPIKYSRLWSLYKKYEVSFWTAEVISPMEDKT---KLMNMDER 67
Query: 78 ERLMIKRNLGFFASSE--SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
I+ + L + + + PE R Y E ++ F +
Sbjct: 68 LLDYIEMVFAKRIYIDNTCLDTVLLTCELLGQVQVPEARGYFSFTMCMENIYKELFMNYV 127
Query: 136 TSLGLDEGELFNMYREVPSITA-------KANWALQYTQTLSSPSFTTGTKD------AD 182
L ++ + K + + L+ T K+ +
Sbjct: 128 EMLRKNKEKNEKTDEVEKKDENNLNSKISKEEYEYNLEKKLNELEDFTKMKELVGNFYDE 187
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN-----KMVGIAEQYQYIMRDESLHLNF 237
+ ++YV+ + ++ + LS N + + I RDE + F
Sbjct: 188 DTLFSEKLIYYVIIKKIFSSSIHLLRLSFSMRNISESELPTQLCDGLDRIRRDEQYQVEF 247
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ + + TK + +L +A +LE + + + + ++
Sbjct: 248 CLSIAE-------SMKTKPSNDQVVNLLEQAIMLEKNFIFSIVDPQVLQIEREDIVAFLL 300
Query: 298 FIANRRCHQIGLEPLFKYTENPF 320
F A+ + F + NPF
Sbjct: 301 FNADEILVDLKYPRQFNVS-NPF 322
>gi|301750612|gb|ADK88940.1| ribonucleotide reductase subunit 2 [Leporid herpesvirus 4]
Length = 316
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 62/307 (20%), Positives = 112/307 (36%), Gaps = 30/307 (9%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+ +E+ D + L+ +E + F ++++ LV + + S
Sbjct: 32 NRWLESELVFSGDERD---VDKLSPEELDFYRFLFTFLSAADDLVTEE-LGRLSSLFSQK 87
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
+ Y + Q E VHS + I L + Y + +++ +
Sbjct: 88 DILHYYVEQECIEVVHSRVYSIIQMVLFKSDETARRNYVANTVHNSAIQAKVRWLEA--- 144
Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
+ D + + F+ ++ EG++F FA I L N + + I RDE
Sbjct: 145 -------RVRDCPSVPEKFILMILIEGIFFAASFAAIAFLRTHNILKVTCQSNDLISRDE 197
Query: 232 SLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG---FVGLN 288
++H + N + ++ +Q + A +EIA+ P G
Sbjct: 198 AVHTTASCCLYNNYLGQYAKPPSERIKQ----LFSNAVEIEIAFIKAKAPANSRILDGAA 253
Query: 289 APSCEQYMQFIANRRCHQIGLEPLF----KYTENPFPWMSEVIDLKKEKNFFETRVTEYQ 344
+ E Y++F A+R IG LF P ++ +K NFFE R T Y
Sbjct: 254 IAAIESYVRFSADRLLKLIGEPALFDEPPPNDGFPL----RLMSTEKHTNFFECRSTAYA 309
Query: 345 QGAELKW 351
GA +
Sbjct: 310 -GAVVND 315
>gi|126649263|ref|XP_001388304.1| ribonucleotide reductase small subunit [Cryptosporidium parvum Iowa
II]
gi|126117398|gb|EAZ51498.1| ribonucleotide reductase small subunit [Cryptosporidium parvum Iowa
II]
Length = 339
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/323 (13%), Positives = 97/323 (30%), Gaps = 31/323 (9%)
Query: 18 NVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDD 77
++ +L L P+KY W Y + W + +D + +
Sbjct: 11 QQKNESILLDNPFRWVLFPIKYSRLWSLYKKYEVSFWTAEVISPMEDKT---KLMNMDEK 67
Query: 78 ERLMIKRNLGFFASSE--SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYII 135
I+ + L + + + PE R Y E ++ F +
Sbjct: 68 LLDYIEMAFAKRIYIDNTCLDTVLLTCELLGQVQVPEARGYFSFTMCMENIYKELFMNYV 127
Query: 136 TSLGLDEGELFNMYREVPSITA-------KANWALQYTQTLSSPSFTTGTKD------AD 182
+ ++ ++ K + + L+ T K+ +
Sbjct: 128 EMIRKNKEKIERTDEVEKKDENNLNSKISKEEYEYNLEKKLNELEDFTKMKELVGNFYDE 187
Query: 183 QEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN-----KMVGIAEQYQYIMRDESLHLNF 237
+ ++YV+ + ++ + LS N + + I RDE + F
Sbjct: 188 DTLFSEKLIYYVIIKKIFSSSIHLLRLSFSMRNISESELPTQLCDGLDRIRRDEQYQVEF 247
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQ 297
+ + + TK + +L +A +LE + + + + ++
Sbjct: 248 CLSIAK-------SMKTKPSNDQVVNLLEQAIMLEKNFIFSIVDPQVLQIEREDIVAFLL 300
Query: 298 FIANRRCHQIGLEPLFKYTENPF 320
F A+ + F + NPF
Sbjct: 301 FNADEILVDLKYPRQFNVS-NPF 322
>gi|238584957|ref|XP_002390722.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553]
gi|215454468|gb|EEB91652.1| hypothetical protein MPER_09958 [Moniliophthora perniciosa FA553]
Length = 155
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 11 QAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKS 70
G+ + ++ +L L P++Y W+ Y A + W E+ + DL W
Sbjct: 62 FVGDVELPESEEPLLKESKRRFVLFPIQYPEIWQMYKKAEASFWTAEEMDLSKDLHDWN- 120
Query: 71 KNGLTDDERLMIKRNLGFFASSESL 95
N + D+ER I L FFA+S+ +
Sbjct: 121 -NRMNDNERHFISHVLAFFAASDGI 144
>gi|330949821|gb|EGH50081.1| ribonucleotide-diphosphate reductase subunit beta [Pseudomonas
syringae Cit 7]
Length = 65
Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/65 (64%), Positives = 48/65 (73%)
Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
N E Y++FIANRR QIGL+ + T NPFPWMSE++DLKKEKNFFETRV EYQ G
Sbjct: 1 NGAGMEDYLKFIANRRLSQIGLKEEYPGTTNPFPWMSEIMDLKKEKNFFETRVIEYQTGG 60
Query: 348 ELKWD 352
L WD
Sbjct: 61 ALSWD 65
>gi|10140982|ref|NP_065559.1| ribonucleotide-reductase, small subunit [Alcelaphine herpesvirus 1]
gi|81984051|sp|O36410|RIR2_ALHV1 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|2338023|gb|AAC58107.1| ribonucleotide-reductase, small subunit [Alcelaphine herpesvirus 1]
Length = 305
Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 60/309 (19%), Positives = 104/309 (33%), Gaps = 26/309 (8%)
Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
+ +E N W P ++ + D+ K + +++ + K F +E+LV
Sbjct: 13 HPGFFELTQETFQNRWFPAQINLSVDV---KCLSLMSEADVNFYKYLFTFLGMAETLVNF 69
Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
N + + + + Y Q E VH + I+ L + E K
Sbjct: 70 N-IDELLVDFECHDIKHYYCEQMAMECVHGKVYFNILNMLFKNN---LAATWEFAEAVLK 125
Query: 159 ANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMV 218
+ + L S TK + EG++F + F I L M
Sbjct: 126 DEALQKKLEWLESKIKMAKTKAEKVLIFY-------LIEGVFFISSFYCIGLLRVKGVMP 178
Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
G+ YI RDE LH + N + + + ++ EA +E A+ E
Sbjct: 179 GVCMANDYISRDELLHTRAAALLYNTMI----PKEERPSSEWVVSLFKEAVEIECAFI-E 233
Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNF 335
K ++ +++ A+R + I L +K P K +F
Sbjct: 234 AKTKQVTFVSMDDIRAFLEATADRLLNSIELPRYYKSDPPQSCPLT----YTGCIKNVSF 289
Query: 336 FETRVTEYQ 344
FE TEY
Sbjct: 290 FERESTEYS 298
>gi|213023521|ref|ZP_03337968.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 256
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 47/267 (17%), Positives = 92/267 (34%), Gaps = 25/267 (9%)
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 1 TLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYA 60
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P + KA L + + V E FY+GF
Sbjct: 61 WSEENPPLQRKAQIILAHYVSDEPLKKKI---------------ASVFLESFLFYSGFWL 105
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 106 PMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKLFALDLLME 165
Query: 268 ATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWM 323
EI Y G+V + ++ + AN+ +G E LF NP
Sbjct: 166 LYDNEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILA 221
Query: 324 SEVIDLKKEKNFFETRVTEYQQGAELK 350
+ + + +FF + Y G ++
Sbjct: 222 ALSPNADENHDFFSGSGSSYVMGKTVE 248
>gi|284504289|ref|YP_003407004.1| ribonucleotide reductase small chain [Marseillevirus]
gi|282935727|gb|ADB04042.1| ribonucleotide reductase small chain [Marseillevirus]
Length = 280
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 122/287 (42%), Gaps = 25/287 (8%)
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN--PECRQYLLRQAF 122
++ W + LT E+ +K L FFA + +V N+V + +S+ E + + QA
Sbjct: 1 MSDW---SKLTKGEKKFVKLELAFFAQFDGIVVENLVRNFQQEVSSYAKEIEWFYILQAA 57
Query: 123 EEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTK 179
E +H+ T+ +I +L + + PSI ANW ++
Sbjct: 58 NELIHNETYMNLIDNLLPSPKKREKALDAISNYPSIRLIANWVERWMDRRIPLP------ 111
Query: 180 DADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGI 239
+ + + EG+ F FA I N++ G+ + ++I +DE+LH F
Sbjct: 112 --------ERIIAFAALEGVIFTGSFAAIHYFTITNRLKGLRKANEWISKDEALHQRFA- 162
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+ + + ++ + + Q++ + +L A + H+ + V ++A YM+
Sbjct: 163 EAVYRYIVDVIKAFPRVSQERVQEILGSAIDAVSPFIHDCLRFKNVNIDAERMIGYMKNA 222
Query: 300 ANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
A+ +G E F + +M +I + + NFFE V +Y +G
Sbjct: 223 ADGLAFSLGYEKFFNSDSS-LDYML-LIGMDNKTNFFEEVVADYAKG 267
>gi|30348565|emb|CAC84357.1| RRsmall [Saimiriine herpesvirus 2]
Length = 305
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 59/307 (19%), Positives = 111/307 (36%), Gaps = 28/307 (9%)
Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
E N W P++VP+Q D+ + L + + K F +E LV N +
Sbjct: 16 FLELTKETWKNRWFPSQVPLQGDVCC---VDMLNERDLEFYKFLFTFLGMAEKLVNIN-I 71
Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNMYREVPSITAKAN 160
+ + + Y Q E +H + I++ L + E+++ ++ + +A
Sbjct: 72 EDLLSQFDSHDVSHYYAEQMAMENIHGKVYANILSMLFKNNITEVYSYACDIMNDSALQE 131
Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
L++ + + + + +++ EG++F + F I M GI
Sbjct: 132 -KLKWLN----------GRVTEASDKAEKILLFLLVEGIFFISSFFSIGLFRVRGIMNGI 180
Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
YI RDE LH + + N + + + + EA +E +
Sbjct: 181 CLANDYIARDEMLHTSAAALLYNTMTK----SSERPSEDWIYKLFREAVEVEFKFIA-AK 235
Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFE 337
G +N Q++Q A+R I L P++ P K NFFE
Sbjct: 236 GHGVSLVNVHEIRQFLQATADRILESINLNPIYGSLPPENCPL----AYTSSTKSVNFFE 291
Query: 338 TRVTEYQ 344
++Y
Sbjct: 292 RDNSDYT 298
>gi|330861133|emb|CBX71396.1| ribonucleoside-diphosphate reductase 2 subunit beta [Yersinia
enterocolitica W22703]
Length = 239
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/255 (18%), Positives = 92/255 (36%), Gaps = 28/255 (10%)
Query: 108 LSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQY 165
S P +F EAVH+ ++ I ++L + E + E + KA+ LQ+
Sbjct: 2 PSPPHEEAVFSNISFMEAVHARSYSSIFSTLCMTSDVDEAYRWSEENGPLQKKADIILQH 61
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
V E FY+GF + ++ A+ +
Sbjct: 62 YNNDDPLKKKI---------------ASVFLESFLFYSGFYLPMYWSSRARLTNTADLIR 106
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I+RDE++H + + + + +E + + +L + EI Y V
Sbjct: 107 LIIRDEAVHGYYIGYKFQKGLEKLDNNRRQEIKNFAFDLLQDLYDNEIHYTESLYDG--V 164
Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTE 342
G ++++ + AN+ +G E LF ++ NP + + + +FF +
Sbjct: 165 GWT-EDVKKFLHYNANKALMNLGYEALFPASQANVNPAILAALSPNADENHDFFSGSGSS 223
Query: 343 YQQGAEL-----KWD 352
Y G + WD
Sbjct: 224 YVIGKAVNTEDEDWD 238
>gi|156096873|ref|XP_001614470.1| ribonucleotide reductase small subunit [Plasmodium vivax SaI-1]
gi|148803344|gb|EDL44743.1| ribonucleotide reductase small subunit, putative [Plasmodium vivax]
Length = 335
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/313 (14%), Positives = 101/313 (32%), Gaps = 39/313 (12%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +L + P+KY W Y + W + D L ++
Sbjct: 17 NNDDILKENQFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKDKK------FLESIDK 70
Query: 80 LMIKRNLGFFASSESLVANNIVL------AIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
M+ + + + + PE R + Q E +H +
Sbjct: 71 NMLVKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYAC 130
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
I + D + + N ++ S+ K W T + + F L
Sbjct: 131 IFETYIPDAKQKRVIINKVIQLDSVLKKQKW-------------LTELFETNIPFYNKLV 177
Query: 191 VFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
+ Y+ + F ++ + N + + ++ I RDE LH +F + N + +
Sbjct: 178 LIYIS--KVLFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCNHLNNKL 235
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
+ + A LE ++ E + + + + +++++A+ +
Sbjct: 236 KY-------ESLLDYFKMAVELEYQFSMEMLELSVLKIKKEQVKSFLEYLADTMLVNLKH 288
Query: 310 EPLFKYTENPFPW 322
F ++ PF W
Sbjct: 289 PKYFN-SKYPFTW 300
>gi|9631250|ref|NP_048031.1| small subunit of ribonucleotide reductase [Ateline herpesvirus 3]
gi|4019286|gb|AAC95584.1| small subunit of ribonucleotide reductase [Ateline herpesvirus 3]
Length = 305
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 59/313 (18%), Positives = 105/313 (33%), Gaps = 27/313 (8%)
Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
E N W P++VP+Q D+ + L + + K F +E LV N +
Sbjct: 16 FLELTKETWKNRWFPSQVPLQGDVCC---VDLLNERDIEFYKFLFTFLGMAEKLVNIN-I 71
Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
+ + + Y Q E +H + I+ L + Y
Sbjct: 72 EDLLGQFESHDISHYYAEQMAMENIHGKVYANILNMLFKNNITEVYSYAHDIMNDCALQE 131
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+++ + + + + +++ EG++F + F I L M GI
Sbjct: 132 KIRWLN----------GRVTETSDKAEKILLFLLVEGIFFISSFFSIGLLRVRGIMNGIC 181
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
YI RDE LH + + N + + ++ + EA +E +
Sbjct: 182 LANDYIARDEMLHTSAAALLYNTMTK----PSERPPEKWIYELFREAVEVEFKFIS-AKV 236
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFET 338
G +N Q++Q A+R I L P++ P K NFFE
Sbjct: 237 HGVSHVNVHEIRQFLQATADRILESINLNPIYHSVPPANCPL----VYTSSTKSVNFFER 292
Query: 339 RVTEYQQGAELKW 351
++Y G
Sbjct: 293 DNSDY-TGTVTND 304
>gi|22550280|gb|AAN01603.1| ribonucleotide reductase small subunit [Human herpesvirus 2 strain
G]
Length = 342
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/308 (20%), Positives = 114/308 (37%), Gaps = 27/308 (8%)
Query: 52 NHW--MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLS 109
N W TE+ D + + L++ E + F ++++ LV N + +
Sbjct: 53 NRWLETETELVFVGDEE--EDVSKLSEGELGFYRFLFAFLSAADDLVTEN-LGGLSGLFE 109
Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
+ Y + Q E VHS + I L + + Y + + +
Sbjct: 110 QKDILHYYVEQECIEVVHSRVYNIIQLVLFHNNDQARRAYVARTITHPAIRVKVDWLEA- 168
Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
+ + + + + F+ ++ EG++F FA I L N + + I R
Sbjct: 169 ---------RVRECDSIPEKFILMILIEGVFFAASFAAIAYLRTNNLLRVTCQSNDLISR 219
Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
DE++H + N K + + EA +EI + P L+
Sbjct: 220 DEAVHTTASCYIYNNYL----GGHAKPEAARVYRLFREAVDIEIGFIRSQAPTDSSILSP 275
Query: 290 ---PSCEQYMQFIANRRCHQIGLEPLFKYTENPFP---WMSEVIDLKKEKNFFETRVTEY 343
+ E Y++F A+R I ++PL+ + P P + ++ K NFFE R T Y
Sbjct: 276 GALAAIENYVRFSADRLLGLIHMQPLYSASA-PAPDASFPLSLMSTDKHTNFFECRSTSY 334
Query: 344 QQGAELKW 351
GA +
Sbjct: 335 A-GAVVND 341
>gi|221055321|ref|XP_002258799.1| Ribonucleotide reductase small subunit [Plasmodium knowlesi strain
H]
gi|193808869|emb|CAQ39572.1| Ribonucleotide reductase small subunit,putative [Plasmodium
knowlesi strain H]
Length = 335
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/313 (14%), Positives = 101/313 (32%), Gaps = 39/313 (12%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +L + P+KY W Y + W + D L ++
Sbjct: 17 NNDDILKENQFRWVMFPIKYKTFWSYYKEVESLFWTAEDYNFDKDKK------FLESIDK 70
Query: 80 LMIKRNLGFFASSESLVANNIVL------AIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
M+ + + + + PE R + Q E +H +
Sbjct: 71 NMLVKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYAC 130
Query: 134 IITSLGL---DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
I + + + N ++ S+ K W T + + F L
Sbjct: 131 IFETYIPDAKQKRTIINKVIQLDSVLKKQKW-------------LTELFETNIPFYNKLV 177
Query: 191 VFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
+ Y+ + F ++ + N + + ++ I RDE LH +F + N + +
Sbjct: 178 LIYIS--KVLFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCNHLNNKL 235
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
+ ++ A LE +A E + + + + +++++A+ +
Sbjct: 236 KY-------ERLLDYFKMAVKLEYQFAIEMLDLSVLKIKKEQVKSFLEYLADTMLVNLKH 288
Query: 310 EPLFKYTENPFPW 322
F ++ PF W
Sbjct: 289 PKYFN-SKYPFTW 300
>gi|9629622|ref|NP_044898.1| ribonucleotide reductase subunit 2 [Murid herpesvirus 4]
gi|6625623|gb|AAF19324.1|AF105037_56 60 [murid herpesvirus 4]
gi|1850859|emb|CAA70275.1| ribonucleotide reductase, small subunit [Murid herpesvirus 4]
gi|2317992|gb|AAB66450.1| ribonucleotide reductase small [murid herpesvirus 4]
Length = 305
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 55/307 (17%), Positives = 104/307 (33%), Gaps = 26/307 (8%)
Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
E N W P+++P+ D+A L + +R K F +E LV N +
Sbjct: 16 FLELTTETWKNMWFPSQIPLSSDVA---GIAQLNETDREFYKFLFVFLGLAERLVNFN-I 71
Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
+ + + + Y Q E +H + I+ + Y
Sbjct: 72 EDLVKEFNCHDATHYYAEQMAMENIHGKVYANILQLFFNGDMMKLKEYAVKVVADPTLKA 131
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
L + T+ + + + + +++ EG++F + F I + GI
Sbjct: 132 KLDWLH----------TRVKNTKTRAEKVLIFLLIEGIFFISSFYSISLFRVRGMLNGIC 181
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
YI +DE LH + N + + + + EA +E ++
Sbjct: 182 LANDYISKDELLHTRAAAVLYNSLI----PAKERPDAAWIKRLFQEAVEVEYSFIA-AKS 236
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFET 338
K + ++++Q +R IG+EP++ P K NFFE
Sbjct: 237 KNVTLVVPGEIKKFLQATCDRILQSIGVEPIYGSHAPVTCPL----SYNGCIKSVNFFER 292
Query: 339 RVTEYQQ 345
T+Y
Sbjct: 293 EGTDYST 299
>gi|9626016|ref|NP_040262.1| ribonucleotide reductase, small subunit [Saimiriine herpesvirus 2]
gi|266917|sp|Q01038|RIR2_SHV21 RecName: Full=Ribonucleoside-diphosphate reductase small chain;
AltName: Full=Ribonucleotide reductase small subunit
gi|66391|pir||WMBEP5 ribonucleoside-diphosphate reductase (EC 1.17.4.1) small chain -
saimiriine herpesvirus 1 (strain 11)
gi|60381|emb|CAA45683.1| ribonucleotide reductase, small subunit [Saimiriine herpesvirus 2]
gi|330989|gb|AAA46136.1| ribonucleotide reductase small subunit [Saimiriine herpesvirus 2]
Length = 305
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 59/307 (19%), Positives = 108/307 (35%), Gaps = 28/307 (9%)
Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
E N W P++VP+Q D+ + L + + K F +E LV N +
Sbjct: 16 FLELTKETWKNRWFPSQVPLQGDVCC---VDMLNERDLEFYKFLFTFLGMAEKLVNIN-I 71
Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE-GELFNMYREVPSITAKAN 160
+ + + Y Q E +H + I+ L + E+++ ++ + +A
Sbjct: 72 EDLLSQFDSHDISHYYAEQMAMENIHGKVYANILNMLFKNNITEVYSYACDIMNDSA--- 128
Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
L + + + + +++ EG++F + F I M GI
Sbjct: 129 --------LQEKLRWLNGRVTEASDKAEKILLFLLVEGIFFISSFFSIGLFRVRGIMNGI 180
Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
YI RDE LH + + N + + + + EA +E +
Sbjct: 181 CLANDYIARDEMLHTSAAALLYNTMTK----SSERPSEDWIYKLFREAVEVEFKFIA-AK 235
Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFE 337
G +N Q++Q A+R I L P++ P K NFFE
Sbjct: 236 GYGVSLVNVHEIRQFLQATADRILESINLNPIYGSLPPENCPL----AYTSSTKSVNFFE 291
Query: 338 TRVTEYQ 344
++Y
Sbjct: 292 RDNSDYT 298
>gi|68068657|ref|XP_676239.1| ribonucleotide reductase small subunit [Plasmodium berghei strain
ANKA]
gi|56495842|emb|CAH97095.1| ribonucleotide reductase small subunit, putative [Plasmodium
berghei]
Length = 299
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 49/291 (16%), Positives = 100/291 (34%), Gaps = 28/291 (9%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
+ P+KY W Y + W + D K L +++ + + L
Sbjct: 1 VMFPIKYKTFWNYYKE-ESLFWTAEDHNFDKD------KPFLNSMDKITLSKLLELLYLH 53
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
I + + PE R + Q E +H+ + I S D +
Sbjct: 54 LCDEQAIITSKLLDIIQIPEGRAFYGFQMCMENIHNEVYACIFESYSSDSKQ-------- 105
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ L+Y ++ +A+ F L + Y+ + F GF+ + S
Sbjct: 106 --KKEIIDKVLKYESVFKKQNWLYSEFEANIPFYNKLILLYIS--KVLFNGGFSILASHC 161
Query: 213 R-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
+ N + ++ I RDE L +F + N + + + + A L
Sbjct: 162 KENNILSCFTGVHEKIQRDEYLQGDFSVMCCNHLNNKLKY-------ESVLYYFKSAVEL 214
Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
E + + + F+ + +Q++Q++A+ + F ++ PF W
Sbjct: 215 EYNFCVDMLDFNFLKITKEQVKQFLQYLADTMLLNLKYPKHFN-SKYPFTW 264
>gi|294955280|ref|XP_002788462.1| ribonucleoside-diphosphate reductase small chain, putative
[Perkinsus marinus ATCC 50983]
gi|239903931|gb|EER20258.1| ribonucleoside-diphosphate reductase small chain, putative
[Perkinsus marinus ATCC 50983]
Length = 157
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
W + + + + A +E + + +P G +G+NA +Y++F+A+R +G +
Sbjct: 23 WETLTKNEQHFIKNSAVNVEREFITDALPVGLIGMNAELMGRYIEFVADRLLVALGYAKI 82
Query: 313 FKYTENPFPWMSEVIDLKKEKNFFETRVT 341
+ + NPF WM+ +I L+ + NFFE RV
Sbjct: 83 YN-SANPFDWMT-MISLQGKTNFFEKRVG 109
Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKR 84
Y + W E+ + DL W++ LT +E+ IK
Sbjct: 1 YKQHEASFWTAEEIDLGQDLRDWET---LTKNEQHFIKN 36
>gi|213021870|ref|ZP_03336317.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 277
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 97/236 (41%), Gaps = 23/236 (9%)
Query: 114 RQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-- 171
++ AF E +HS ++ +II ++ D +F+ I +A Y L
Sbjct: 7 ETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMT 66
Query: 172 ---------------PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK 216
+ ++ ++ L + E + FY FA +
Sbjct: 67 SYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAEREL 125
Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLE 272
M G A+ + I RDE+LHL ++N + +++P + +E +Q+ + +A E
Sbjct: 126 MEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQE 185
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+A G +GLN QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 186 KEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 241
>gi|50404173|gb|AAT76849.1| ribonucleotide reductase small subunit [Plasmodium falciparum]
Length = 324
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 44/307 (14%), Positives = 98/307 (31%), Gaps = 38/307 (12%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +L + P+KY W Y + W + D
Sbjct: 17 NNDEILKENKFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKDKQ-----------YL 65
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
I +N+ I + + PE R + Q E +H + I +
Sbjct: 66 ENIDKNMLVKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYACIFETYI 125
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
D + + N E+ S+ K W T +++ + L + Y+
Sbjct: 126 PDSKQKRVIINKVIELDSVLKKQKW-------------LTEIFESNIPYYNKLVLLYIS- 171
Query: 197 EGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
+ F ++ + N + + ++ I RDE LH +F + N + + +
Sbjct: 172 -KVLFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCNHLVNKLKY---- 226
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+ A LE ++ E + + + +++++ + + +
Sbjct: 227 ---EHVLDYFKMAVDLEYQFSLEMLELNVLKIKKEQVRAFLEYLTDTMLTNLKYPKHYN- 282
Query: 316 TENPFPW 322
++ PF W
Sbjct: 283 SKYPFSW 289
>gi|258597037|ref|XP_001347439.2| ribonucleotide reductase small subunit, putative [Plasmodium
falciparum 3D7]
gi|254922415|gb|AAN35352.2| ribonucleotide reductase small subunit, putative [Plasmodium
falciparum 3D7]
Length = 335
Score = 99.9 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/313 (13%), Positives = 101/313 (32%), Gaps = 39/313 (12%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
++ +L + P+KY W Y + W + D L + ++
Sbjct: 17 NNDEILKENKFRWVMFPIKYKTFWSYYKEIESLFWTAEDYNFDKDKQ------YLENIDK 70
Query: 80 LMIKRNLGFFASSESLVANNIVL------AIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
M+ + + + + PE R + Q E +H +
Sbjct: 71 NMLVKLFELICFYSLKDLHVYEEQALITSKMLDIIQIPEGRAFYGFQMCMENIHDEVYAC 130
Query: 134 IITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
I + D + + N E+ S+ K W T +++ + L
Sbjct: 131 IFETYIPDSKQKRVIINKVIELDSVLKKQKW-------------LTEIFESNIPYYNKLV 177
Query: 191 VFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
+ Y+ + F ++ + N + + ++ I RDE LH +F + N + +
Sbjct: 178 LLYIS--KVLFNGTLNILIGYCKENSILPCLCNVHEKIHRDEYLHGDFSVMCCNHLVNKL 235
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
+ + A LE ++ E + + + +++++ + +
Sbjct: 236 KY-------EHVLDYFKMAVDLEYQFSLEMLELNVLKIKKEQVRAFLEYLTDTMLTNLKY 288
Query: 310 EPLFKYTENPFPW 322
+ ++ PF W
Sbjct: 289 PKHYN-SKYPFSW 300
>gi|269861752|ref|XP_002650564.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220065950|gb|EED43491.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 106
Score = 99.5 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
++ EA +E + E++P +G+N QY++F+A+R +G + ++ + NPF
Sbjct: 7 IEDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPF 65
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
+M E I L+ + NFFE R YQ+G
Sbjct: 66 DFM-ENISLQGKTNFFERREANYQKG 90
>gi|221104331|ref|XP_002154681.1| PREDICTED: similar to ribonucleotide reductase small subunit,
partial [Hydra magnipapillata]
Length = 261
Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 96/243 (39%), Gaps = 26/243 (10%)
Query: 9 PIQAGEKRVNVDDKRMLNARSDVNQLLPL--KYGWAWEKYLSACNNHWMPTEVPMQDDLA 66
A +++ ++ +LN + P+ K+ W+ Y + +W E+ +D
Sbjct: 26 EYDANDEKKKDSEEEILNKDLSRLVVKPINSKHKVIWDLYKKQKDAYWTAEEIDFSNDRH 85
Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
+ + + + IKR L FFA ++S+V NI + + E Q E
Sbjct: 86 DFLKVDK---NIQHFIKRILAFFAGADSIVNINIKKKLSKITVK-EAEIAYGFQQMMEDT 141
Query: 127 HSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
HS + ++ + D EL N ++ V SI WA ++ + ++
Sbjct: 142 HSEVYADMLIKIITDPVERDELINAFKTVASIKRMIQWAQRWINSKRRIGYS-------- 193
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGR---ANKMVGIAEQYQYIMRDESLHLNFGID 240
V + +FEG+ F FA I L + + M G+ + I +DE +H FG
Sbjct: 194 ------IVVFCIFEGLMFSGAFAGIYWLKKILGEDIMKGLIQSNNLIAKDEGMHTIFGCV 247
Query: 241 VIN 243
+
Sbjct: 248 IYT 250
>gi|269866968|ref|XP_002652448.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220062479|gb|EED41609.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 100
Score = 98.7 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
+ ++ EA +E + E++P +G+N QY++F+A+R +G + ++ + NPF
Sbjct: 1 MKDIVREAVAIEQEFLSESLPVSLIGMNCKLMCQYIEFVADRLLFALGEKKIYNVS-NPF 59
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQG 346
+M E I L+ + NFFE R YQ+G
Sbjct: 60 DFM-ENISLQGKTNFFERREANYQKG 84
>gi|298256099|gb|ADI71328.1| ribonucleoside diphosphate reductase beta subunit-like protein
[Epizootic haematopoietic necrosis virus]
Length = 202
Score = 97.5 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 15/189 (7%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F
Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E R L A EA+H + + +LG+ + E + + +
Sbjct: 88 DVEVGALYLDHLAQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+T K ++ + + L + V+ EG+ + F +L+
Sbjct: 147 EEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193
Query: 213 RANKMVGIA 221
R KM G+
Sbjct: 194 RRGKMKGMG 202
>gi|298256109|gb|ADI71333.1| ribonucleoside diphosphate reductase beta subunit-like protein
[Short-finned eel ranavirus]
Length = 202
Score = 97.5 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/189 (20%), Positives = 68/189 (35%), Gaps = 15/189 (7%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F
Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E R L A EA+H + + +LG+ + E
Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCEY------- 140
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
Y + F + L V+ EG+ + F +++
Sbjct: 141 -------QAFADYEEMTDKLDFMREMDCSTLPGLARSLFRAVLNEGVSLFAAFVMLMTFQ 193
Query: 213 RANKMVGIA 221
R KM G+
Sbjct: 194 RRGKMKGMG 202
>gi|32709417|gb|AAP86727.1| NrdB [Enterobacteria phage LZ2]
Length = 313
Score = 97.5 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 56/319 (17%), Positives = 112/319 (35%), Gaps = 43/319 (13%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ E + + W P EV +
Sbjct: 1 MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHRVFEELTEKSLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-------------- 169
E +HS ++ +I+ +L D ++F+ +I +A +Y +
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKTREWENAKEFV 174
Query: 170 ------SSPSFTTGTKDADQEFLQDLFVFYVV--------FEGMWFYTGFAQILSLGRAN 215
F + + + + E + FY FA + +
Sbjct: 175 ELSKESPDADFRLNRAIKQEAEAKRALMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234
Query: 216 -KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATL 270
M G A+ ++I RDE LHL +I Q+++ +E +Q++ + E
Sbjct: 235 EIMEGNAKIMKFIARDEQLHLKGTQYIIRQLQLGTDGDEWVKIAQECEQEAVDIFMEVNR 294
Query: 271 LEIAYAHETMPKG-FVGLN 288
E +A G GLN
Sbjct: 295 QEKDWAVHLFKDGDVPGLN 313
>gi|298256097|gb|ADI71327.1| ribonucleoside diphosphate reductase beta subunit-like protein
[European catfish virus]
gi|298256101|gb|ADI71329.1| ribonucleoside diphosphate reductase beta subunit-like protein
[European sheatfish virus]
Length = 202
Score = 97.5 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 15/189 (7%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA + HWM TE+ ++DD+ WKS +T E+ + L F
Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWMETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E R L A EA+H + + +LG+ + E
Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCEY------- 140
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
Y + F + L V+ EG+ + F +L+
Sbjct: 141 -------QAFADYEEMTDKLDFMREMDCSTLPGLARSLFRAVLNEGVSLFAAFVMLLTFQ 193
Query: 213 RANKMVGIA 221
R KM G+
Sbjct: 194 RRGKMKGMG 202
>gi|225619347|ref|YP_002720573.1| ribonucleoside-diphosphate reductase subunit beta [Brachyspira
hyodysenteriae WA1]
gi|225214166|gb|ACN82900.1| ribonucleoside-diphosphate reductase, beta subunit [Brachyspira
hyodysenteriae WA1]
Length = 356
Score = 97.2 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 65/352 (18%), Positives = 135/352 (38%), Gaps = 19/352 (5%)
Query: 16 RVNVDDKRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
++++ ++ + + A + ++ N W EV + D + + L
Sbjct: 7 DKKPQNEKIFFGDFGHYLRIDSVSHEVARKLKEASEGNTWFSKEVDYKSDKTRF---SSL 63
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYI 134
+D + K N+ + +S V + + R +++ R A EE +H+ ++ Y
Sbjct: 64 PEDAQRAFKLNIAYQTLMDSGVTSGFSSILNRIVTSSIWSILYARIAIEENIHAESYSYG 123
Query: 135 ITSLGLDEG----ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLF 190
++ + E +L V K L + + T D ++ + L
Sbjct: 124 LSEVFGHEATDTLDLVYNDEFVKHRMEKEVELFGNVDELCNLENSPATLDEKKQAVLKLL 183
Query: 191 VFYVVFEGMWFYTGFAQILSLGRA--NKMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKI 247
+ + E + F F ++ N + G + + I DE + H+ G +V+N ++
Sbjct: 184 IGIYLLESVKFPFSFLVTFTINNNYDNAIAGFTKTIKLIAHDELNTHVPTGKNVMNILRK 243
Query: 248 ENPHLWTKEFQ-----QKSRTMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIAN 301
EN +T F+ + +R M EI +A G+N+ E ++++ A
Sbjct: 244 ENEQGFTHLFKSGWFNETARAMAEFTVNEEIKWAKYLFDGYQVAGINSSVSEHFIKYWAG 303
Query: 302 RRCHQIGLEPLFKYTE-NPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKW 351
R +G+E + + + W + D+ K ET T YQ+GA
Sbjct: 304 VRLRDLGVESPYNEKKSDVIDWFNSYRDINKQNAALQETTNTSYQKGALKND 355
>gi|298256093|gb|ADI71325.1| ribonucleoside diphosphate reductase beta subunit-like protein
[Bohle iridovirus]
Length = 202
Score = 96.4 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 15/189 (7%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F
Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E R L A EA+H + + +LG+ + E + + +
Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+T K ++ + + L + V+ EG+ + F +L+
Sbjct: 147 GEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193
Query: 213 RANKMVGIA 221
R+ KM G+
Sbjct: 194 RSGKMKGMG 202
>gi|55978391|ref|YP_145447.1| ribonucleoside-diphosphate reductase, beta subunit [Thermus
thermophilus HB8]
gi|55773564|dbj|BAD72004.1| ribonucleoside-diphosphate reductase, beta subunit [Thermus
thermophilus HB8]
Length = 294
Score = 96.0 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 18/296 (6%)
Query: 55 MPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
M TE Q DL + ER +++R L A E L +Y PE
Sbjct: 1 MHTEFSFQSDLQD---HALADEKERSLVERALLAIAQVE-LAVKLFWARVYDRFPKPEIA 56
Query: 115 QYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174
+ L A E H++ + + L E F E S AL +
Sbjct: 57 EVGLTFAESEVRHANAYAH--LLELLGLEEAFGQALEGASALRDRAQAL-------GEAL 107
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN-KMVGIAEQYQYIMRDESL 233
+E+ LF+F E + ++ F +++L R + GI+ + ++E++
Sbjct: 108 RRAQGKDLREYALALFLFSAFTEHVSLFSQFYVLMALNRRGNRYKGISNAIEATSKEENV 167
Query: 234 HLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL-NAPSC 292
H FG++++ ++ E+P + FQ+++ + E A G L
Sbjct: 168 HGLFGVELLRLLRTEHPEALGEGFQEEALRLAQGLFRAEEALLDWLFSAGEPALVGHRET 227
Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPF---PWMSEVIDLKKEKNFFETRVTEYQQ 345
++++ N+ GL P+F E W + + KE +FF R Y +
Sbjct: 228 LEFLKGRYNQVLALHGLPPVFSVDEKALRDTEWFTLELLADKEVDFFNKRSVAYAR 283
>gi|298256095|gb|ADI71326.1| ribonucleoside diphosphate reductase beta subunit-like protein [Cod
iridovirus/15/04.11.92/DNK]
gi|298256103|gb|ADI71330.1| ribonucleoside diphosphate reductase beta subunit-like protein
[Pike-perch iridovirus]
Length = 202
Score = 96.0 bits (237), Expect = 8e-18, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 15/189 (7%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F
Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E R L A EA+H + + +LG+ + E + + +
Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+T K ++ + + L + V+ EG+ + F +L+
Sbjct: 147 EEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193
Query: 213 RANKMVGIA 221
R+ KM G+
Sbjct: 194 RSGKMKGMG 202
>gi|262285102|gb|ACY41130.1| ribonucleotide reductase subunit 2 [Wood mouse herpesvirus]
Length = 305
Score = 96.0 bits (237), Expect = 8e-18, Method: Composition-based stats.
Identities = 55/307 (17%), Positives = 101/307 (32%), Gaps = 26/307 (8%)
Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
E N W P+++P+ D+A L +R K F +E LV N +
Sbjct: 16 FLELTTETWKNRWFPSQIPLSSDVA---GIAQLNATDREFYKFLFVFLGLAEKLVNFN-I 71
Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
+ + + + Y Q E +H + I+ + Y
Sbjct: 72 EDLVKEFNCHDATHYYAEQMAMENIHGKVYANILQLFFNGDMMKLKEYAVKVVADPTLKA 131
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
L + T+ + + + + +++ EG++F + F I + GI
Sbjct: 132 KLDWLH----------TRVKNTKTRAEKVLIFLLIEGIFFISSFYSISLFRVRGMLNGIC 181
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
YI +DE LH + N + + + + EA +E A+
Sbjct: 182 LANDYISKDELLHTRAAAVLYNTLI----PAKERPDPAWIKRLFQEAVEVEYAFIA-AKS 236
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFET 338
K + ++++Q +R IG+ L+ P K NFFE
Sbjct: 237 KNVTLVVPGEIKRFLQATCDRILQSIGVGALYGSHAPVTCPL----SYNGCIKSVNFFER 292
Query: 339 RVTEYQQ 345
T+Y
Sbjct: 293 EGTDYST 299
>gi|298256105|gb|ADI71331.1| ribonucleoside diphosphate reductase beta subunit-like protein
[Ranavirus maxima/9995205/DNK]
Length = 202
Score = 95.2 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 76/189 (40%), Gaps = 15/189 (7%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA + HW+ TE+ ++DD+ WKS +T E+ + L F
Sbjct: 29 CFKPFRYAWAEDIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E R L A EA+H + + +LG+ + E + + +
Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCE-YQAFADY 146
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+T K ++ + + L + V+ EG+ + F +L+
Sbjct: 147 EEMTDKLDFMRE-------------MDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193
Query: 213 RANKMVGIA 221
R+ KM G+
Sbjct: 194 RSGKMKGMG 202
>gi|13095637|ref|NP_076552.1| ribonucleotide reductase small subunit [Bovine herpesvirus 4]
gi|12802587|gb|AAK07979.1|AF318573_59 ribonucleotide reductase small subunit [Bovine herpesvirus 4]
Length = 305
Score = 95.2 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 59/309 (19%), Positives = 107/309 (34%), Gaps = 36/309 (11%)
Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
N W P++V + D+ KS L +R K F +ESLV N + I + +
Sbjct: 25 QNRWFPSQVSLHGDVNHLKS---LNVQDREFYKFLFTFLGMAESLVNFN-IEDIIKQFES 80
Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDE----GELFNMYREVPSITAKANWALQYT 166
+ Y Q E +H+ ++ I+ ++ M ++ K +W
Sbjct: 81 HDMLHYYTEQMAMENIHARMYENILNMFFNNDPAEMYRYTQMIINDRALIRKLDWLHSRI 140
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
+++S+ + + +++ EG++F + F I L G+ Y
Sbjct: 141 KSVSNKAEK--------------VLLFLLVEGIFFVSSFYSIGLLRVRGMFNGVCLANDY 186
Query: 227 IMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVG 286
I RDE LH + N + + EA +E + G
Sbjct: 187 ISRDELLHTRAAALLYNTMVSGADKPHML----WVHNLFKEAVEVEHEFIL-VKSSGVSA 241
Query: 287 LNAPSCEQYMQFIANRRCHQIGL---EPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
+N +++ A+R I L + P K NFFE ++Y
Sbjct: 242 VNVDDIRSFLEATADRILKSINLPPIYGTPPPPKCPL----VYTGCVKNVNFFERDNSDY 297
Query: 344 QQGAELKWD 352
+ +K D
Sbjct: 298 T--SSIKDD 304
>gi|139472853|ref|YP_001129417.1| ORF60 [Human herpesvirus 8]
gi|1718316|gb|AAC57145.1| ORF 60 [Human herpesvirus 8 type M]
gi|2246534|gb|AAB62659.1| ORF 60 [Human herpesvirus 8]
gi|87196889|gb|ABD28915.1| ORF60 [Human herpesvirus 8]
gi|261853541|gb|ACY00463.1| ORF60 [Human herpesvirus 8]
gi|312275208|gb|ADQ57945.1| core gene UL40 family protein [Human herpesvirus 8]
Length = 305
Score = 95.2 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 56/298 (18%), Positives = 105/298 (35%), Gaps = 26/298 (8%)
Query: 51 NNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSN 110
N W P+++P+ D++ L+D ++ + F +E LV N + + + ++
Sbjct: 25 QNRWFPSQIPLHLDVSHVHQ---LSDADKDFYRFLFTFLGMAERLVNFN-IEDLVTNFNS 80
Query: 111 PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLS 170
+ Y Q E +H + I+ + Y + L++ +
Sbjct: 81 HDVAHYYAEQVAMENIHGVVYANILKIFFNNSRGELLAYAAKIILDPALCEKLEWLHSRV 140
Query: 171 SPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRD 230
+ T K + +++ EG++F + F I M G+ YI RD
Sbjct: 141 RKATTKAQK----------ILMFLIVEGIYFISSFYSISLCRVRGIMPGVCLANDYISRD 190
Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
E LH + N + E Q + EA +EI + G +N
Sbjct: 191 ELLHTKAASMLYNTMVEIQEKPSHAEVQA----LFREAVNIEIRFIQ-AKAAGVTLVNVV 245
Query: 291 SCEQYMQFIANRRCHQIGLEPLF---KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQ 345
++++ A+R I + P+F P K NFFE ++Y
Sbjct: 246 DIRRFLEATADRILRDIFVPPIFGTPPPEACPL----SYTGSFKAVNFFERDNSDYTT 299
>gi|254992907|ref|ZP_05275097.1| ribonucleotide-diphosphate reductase subunit beta [Listeria
monocytogenes FSL J2-064]
Length = 229
Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/217 (22%), Positives = 92/217 (42%), Gaps = 15/217 (6%)
Query: 24 MLNARSD-VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMI 82
++N + + + Y + Y N+W+P EV M+ D + L++ E+
Sbjct: 25 IINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQY---PALSEQEKYAF 81
Query: 83 KRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG--L 140
+G A+ +S I I ++++P A +E +H+ ++ Y++ S+
Sbjct: 82 DAIIGLLATLDSPQTRFIY-NIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQ 140
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
++ +F + R P+I + + + + E L + + EG+
Sbjct: 141 EQNRVFELARTHPTIIKRNEPIMDAYDDFMN--------NKTGETLVKALIQSSILEGIN 192
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
FY+GFA +L R NKM G + +I RDE H F
Sbjct: 193 FYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKF 229
>gi|298256107|gb|ADI71332.1| ribonucleoside diphosphate reductase beta subunit-like protein
[Rana esculenta virus]
Length = 202
Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 15/189 (7%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
P +Y WA HW+ TE+ ++DD+ WKS +T E+ + L F
Sbjct: 29 CFKPFRYAWAEAIRTKHEKVHWVETEINLRDDVTDWKS-GVMTPGEKAFVSCVLRLFTQL 87
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V + + + E R L A EA+H + + +LG+ + E
Sbjct: 88 DVEVGALYLDHLTQVFRCNEIRNMLTSFACREAIHQKAYSLLNDTLGMPDCEY------- 140
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
Y + F + L + V+ EG+ + F +L+
Sbjct: 141 -------QAFADYEEMTDKLDFMREMDCSTLPGLARSLLRAVLNEGVSLFAAFVMLLTFQ 193
Query: 213 RANKMVGIA 221
R+ KM G+
Sbjct: 194 RSGKMKGMG 202
>gi|311992719|ref|YP_004009587.1| NrdB ribonucleotide reductase beta subunit [Acinetobacter phage
Ac42]
gi|298684502|gb|ADI96463.1| NrdB ribonucleotide reductase beta subunit [Acinetobacter phage
Ac42]
Length = 372
Score = 93.7 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/313 (16%), Positives = 105/313 (33%), Gaps = 20/313 (6%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
++ W+ Y W + L +K + N+ + ++S+ +
Sbjct: 36 RFDKIWDLYKEMKALDWDEQDFDFAQCLTDFKRVPK---KVADTMIYNIMWQWETDSVAS 92
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+ I + E LR E VH T+ I+ E+
Sbjct: 93 QVPFVLIAPYDPCSEIVAAELRINDNETVHGATYSEIVKLSFDMPKEVLKELLAKTEAHR 152
Query: 158 KANWA-------LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ + + + L+ T +++ + + V E + F F +
Sbjct: 153 RLHVVGTELAALKRRSVELAYHGSTHFSEEEKTIDMMLFYYLMYVLERVQFMISFGVTFT 212
Query: 211 LGRANKMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEA 268
+ + I + I +DE +H + ++V+ ++ E+ + + K +L E
Sbjct: 213 ICESGVFQAIGSAVKKICQDEFEIHCEYRLEVLKELLASEHGQAAFAKLRPKMIKILKEV 272
Query: 269 TLLEIAYAHETMPKG--FVGLNAPSCEQYMQFIANRRCHQIGLEP-----LFKYTENPFP 321
EI +A G VG+NA Q+ F A G +F ENP P
Sbjct: 273 IESEITWAKFLFEDGQAIVGMNADVLIQWALFNAKAVAQNFGFTEEELGFVFP-EENPMP 331
Query: 322 WMSEVIDLKKEKN 334
+ I++ K +N
Sbjct: 332 HLESWININKTQN 344
>gi|189490606|ref|YP_001957176.1| hypothetical ribonucleotide reductase beta subunit [Pseudomonas
phage 201phi2-1]
gi|164609671|gb|ABY63280.1| hypothetical ribonucleotide reductase beta subunit [Pseudomonas
phage 201phi2-1]
Length = 386
Score = 93.3 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 64/357 (17%), Positives = 124/357 (34%), Gaps = 32/357 (8%)
Query: 1 MANNTGLS-PIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEV 59
M+ L I K + +L + + + ++ Y + W E
Sbjct: 1 MSKKVDLPIKIFNNTKTDYNSPEIILGQEPGLFDSIHNHHPALFDLYKRLRSMDWDENEF 60
Query: 60 PMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLR 119
P D L +++ + M+ + L + +++ + IV + L++ +R
Sbjct: 61 PYGDCLHEFETCDK---QFYDMMIKTLAWQWEADATASRAIVNILGPVLTDSRVWAGYVR 117
Query: 120 QAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPS--FTTG 177
E +H+ T+ I+ + D + V + + S +
Sbjct: 118 INDNENLHALTYSEIVRNSFKDPQVILEEILRVEEAQQRLVTVAKIMGEAHDASHAYACR 177
Query: 178 TKDADQEFLQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES-L 233
T DQ +F F++ E + F FA +LG+ I Q I +DE +
Sbjct: 178 TIPNDQALYNKIFKFFMALYYLERIQFMASFAVTFALGKLGMFQPIVMGVQKIAQDEYEI 237
Query: 234 HLNFGIDVINQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAP 290
H FG +VI + E + ++ + + + E + E+ + +G G+
Sbjct: 238 HAQFGQEVIKALLKTERGLIAYEDTKAECIKLFWEILMSEVNWLIYLFSEGRELPGVTLK 297
Query: 291 SCEQYMQFIAN---------------RRCHQI---GLEPLFKYTENPFPWMSEVIDL 329
Q++ F N R + G E F +NP P+M E +DL
Sbjct: 298 KMVQWVLFNCNAAGTFTGHKDGITDEMRAEFLATTGFELEFP-DKNPLPYMVEYLDL 353
>gi|281207436|gb|EFA81619.1| hypothetical protein PPL_05610 [Polysphondylium pallidum PN500]
Length = 1292
Score = 92.9 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 44/227 (19%), Positives = 86/227 (37%), Gaps = 26/227 (11%)
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
+ +D+ W+ L D+ER +I LGFF S ++ NI+ + PE R + Q
Sbjct: 60 LLNDVRDWQC--KLDDNERYLISNILGFFVSIAGIINENIITHFMSEVQIPEARTFYSMQ 117
Query: 121 AFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTG 177
E + S + +I + D E +FN +P + K W L+ S +
Sbjct: 118 IAMENIQSEKYSLLIDAYIKDTDEKSKIFNAIESIPCVKRKCEWLLKSMNNSKSLA---- 173
Query: 178 TKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNF 237
+ + + E + + F IL + + M ++E Y +I+ +E H F
Sbjct: 174 ----------ERLIAFAAVESILYSASFCVILWFHKRSLMPKLSEYYSFIVSNEYTHCEF 223
Query: 238 GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
G + +++ + + +++ +A E
Sbjct: 224 GRLLYSKLINKLDT-------EMIESIIRDAVDCEKQIMESETGDSI 263
>gi|269865992|ref|XP_002652118.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063125|gb|EED41939.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 134
Score = 92.9 bits (229), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ + P++Y WE Y + W EV M D + + LT +E+
Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
IK L FFA+S+ +V N+V + E + + Q +
Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAMKTS 127
>gi|226349643|ref|YP_002776757.1| hypothetical protein ROP_pROB01-04060 [Rhodococcus opacus B4]
gi|226245558|dbj|BAH55905.1| hypothetical protein [Rhodococcus opacus B4]
Length = 326
Score = 92.5 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 15/269 (5%)
Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--N 99
A + + W P + D + GL+D+E+ + F + E VA
Sbjct: 29 AMKLFRKGNKKFWDPEAIDFSQDAQDF---AGLSDEEKRLTCILAAHFIAGEESVAQDLQ 85
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
++ YL + FEEA H F+ ++GL + Y + +
Sbjct: 86 PFMSAMAAEGRLADEAYLTQFTFEEAKHMQAFRLWFDAVGLSSD--LHEYVDYSEPYQRI 143
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMV 218
+T+ L + T + ++ + V EG TG+ + + N +
Sbjct: 144 -----FTEELPKSLYALTTDPSPAAQIRASVTYNHVVEGCLALTGYYAWAKVCKSRNILP 198
Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
G+ E ++I DE H+ +G + + W + + L E L I +
Sbjct: 199 GMQEVIKHIGDDERRHMAWGTFTCRRHVAADDRNW--DVVDERMQELLEPALQLIVRIFD 256
Query: 279 TMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
T + G+ Y NRR I
Sbjct: 257 TFDEIPFGITIDEMTDYGMDKLNRRLESI 285
>gi|269864086|ref|XP_002651449.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220064500|gb|EED42605.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 130
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ + P++Y WE Y + W EV M D + + LT +E+
Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAV 126
IK L FFA+S+ +V N+V + E + + Q +
Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGFQIAMKTS 127
>gi|156086328|ref|XP_001610573.1| ribonucleoside-diphosphate reductase beta subunit [Babesia bovis
T2Bo]
gi|154797826|gb|EDO07005.1| ribonucleoside-diphosphate reductase beta subunit, putative
[Babesia bovis]
Length = 329
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/291 (15%), Positives = 101/291 (34%), Gaps = 35/291 (12%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTD 76
+ ++ +L ++ + P+ Y W Y N+ W + ++ + + L
Sbjct: 16 LEQHNETLLKENANRWVMFPIHYDALWAMYKEIENSFWAAEDFRFANERD---TYSSLPT 72
Query: 77 DERLMIKRNLGFFASSESLVANNIV---LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY 133
+ R ++ + + + + L + PE R + Q E +HS F
Sbjct: 73 ELRQLVVKLISYHNRLDRSEVARPATITLDLLADTQIPEARAFYGFQVSYENIHSELFGI 132
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFY 193
+ +++ +VP AK W T + F + +
Sbjct: 133 MSSAIPGT--------IDVPEADAKIEW-------------LTRNLTSTSCFYIKVILQC 171
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
+ G L + K+ + + +D S+HL F + + +K+
Sbjct: 172 ISKAIFRSAFG-ILADYLRNSKKLPTLLSALDTVAKDVSIHLKFAMAALEHLKL------ 224
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRC 304
+ ++ +L+ A LE+AY +P +GL+ QY++ N+
Sbjct: 225 -RPTRETVMELLNSAYDLEMAYCRSVLPMDHMGLSEYHLSQYIKNNVNQCL 274
>gi|300870141|ref|YP_003785012.1| ribonucleotide-diphosphate reductase subunit beta [Brachyspira
pilosicoli 95/1000]
gi|300687840|gb|ADK30511.1| ribonucleotide-diphosphate reductase beta subunit [Brachyspira
pilosicoli 95/1000]
Length = 359
Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 62/355 (17%), Positives = 132/355 (37%), Gaps = 20/355 (5%)
Query: 14 EKRVNVDDKRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
EK+ N++++R+ ++ + + A + ++ N W EV + D + +
Sbjct: 7 EKKPNLENERIFFGDFGHYIRIDSVSHEIARKLKEASEGNTWFSKEVDYKSDKTRF---S 63
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L +D + K N+ + +S V + + R +++ R A EE +H+ ++
Sbjct: 64 SLPEDAQRAFKLNIAYQTLMDSGVTSGFSSILNRIVTSSIWSILYSRIAIEEVIHAESYS 123
Query: 133 Y-IITSLGLDEGELFNMYREVPSITAKANWALQYT---QTLSSPSFTTGTKDADQEFLQD 188
Y + G E ++ + + ++ L + + T + ++ +
Sbjct: 124 YGLSEVFGHLATETLDLVYNDEFVKHRMEKEVELFSCVDDLCNIENSNATLEEKKKAVLK 183
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGR--ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
L + E + F F ++ + + G + + I DE + I
Sbjct: 184 LLTGIYLLESVKFPFSFLVTFTINNSYNDAITGFTKTIKLIAHDELNTHVPTGKNVIGIL 243
Query: 247 IENPHLWTKEFQQ--KSRTMLHEATLL----EIAYAHETM-PKGFVGLNAPSCEQYMQFI 299
++ + KE M E T EI +A K G+N+ E ++++
Sbjct: 244 RKDANQGFKELFDSGWYNDMAKEMTEFTVNEEIKWAKYLFDGKEVSGINSSVSEHFIKYW 303
Query: 300 ANRRCHQIGLEPLF--KYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKW 351
A R +G+E + + + W + D+ K ET T YQ+GA
Sbjct: 304 AGVRLKDLGVETEYLKEPKSDIIDWFNAYRDINKQNAALQETTNTSYQKGALKND 358
>gi|221783|dbj|BAA00748.1| UL40 [Human herpesvirus 2]
Length = 262
Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 55/281 (19%), Positives = 100/281 (35%), Gaps = 27/281 (9%)
Query: 78 ERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITS 137
E + F ++++ LV N + + + Y + Q E VHS + I
Sbjct: 1 ELGFYRFLFAFLSAADDLVTEN-LGGLSGLFEQKDILHYYVEQECIEVVHSRVYNIIQLV 59
Query: 138 LGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
L + + Y + + + + + + + + F+ ++ E
Sbjct: 60 LFHNNDQARRAYVARTINHPAIRVKVDWLEA----------RVRECDSIPEKFILMILIE 109
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L N + + I RDE++H + N K
Sbjct: 110 GVFFAASFAAIAYLRTNNLLRVTCQSNDLISRDEAVHTTASCYIYNNYL----GGHAKPE 165
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNA---PSCEQYMQFIANRRCHQIGLEPLF- 313
+ + EA +EI + P L+ + E Y++F A+R I ++PL+
Sbjct: 166 AARVYRLFREAVDIEIGFIRSQAPTDSSILSPGALAAIENYVRFSADRLLGLIHMQPLYS 225
Query: 314 ---KYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
P ++ K NFFE R T Y GA +
Sbjct: 226 APAPDASFPLS----LMSTDKHTNFFECRSTSYA-GAVVND 261
>gi|300362837|ref|ZP_07059008.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
gasseri JV-V03]
gi|300353073|gb|EFJ68950.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
gasseri JV-V03]
Length = 275
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 49/291 (16%), Positives = 93/291 (31%), Gaps = 28/291 (9%)
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
N L+DD + +I R ++ ++ +A ++ + AF AVH+ ++
Sbjct: 2 NQLSDDWQQLITRTFTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSY 61
Query: 132 QYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDL 189
I ++L E E ++ A+A + Y
Sbjct: 62 GTIFSTLCTSEQIEEAHEWVVNNDALQARAKAVIPYYTGND---------------PLKS 106
Query: 190 FVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
V + G Y GF L K+ A+ + I+RD+ +H + +
Sbjct: 107 KVAAAIMPGFLLYGGFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKL 166
Query: 250 PHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
E ++ L + LE Y HE + + + A + +G
Sbjct: 167 APAKQAEMKKFVFDFLDKLIDLEKKYLHELYDDFDL---VDDAIHFSLYNAGKFLQNLGY 223
Query: 310 EPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQGA-----ELKWD 352
+ F E +P + + +FF + Y G + WD
Sbjct: 224 DSPFTAEETYISPEVFAQLSAQADENHDFFSGNGSSYVMGTGEETKDDDWD 274
>gi|213612729|ref|ZP_03370555.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
Length = 234
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 83/231 (35%), Gaps = 22/231 (9%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS-----------------PSFT 175
+II ++ D +F+ I +A Y L +
Sbjct: 125 HIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWHLLGEGTHTVNGKTVV 184
Query: 176 TGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQY 226
++ ++ L + E + FY FA + M G A+ +
Sbjct: 185 VNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIRL 234
>gi|71034151|ref|XP_766717.1| ribonucleotide-diphosphate reductase small subunit [Theileria parva
strain Muguga]
gi|68353674|gb|EAN34434.1| ribonucleotide-diphosphate reductase small subunit, putative
[Theileria parva]
Length = 326
Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/303 (14%), Positives = 92/303 (30%), Gaps = 38/303 (12%)
Query: 20 DDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDER 79
+D+ +L + + P+++ W Y NN W + DDL S L
Sbjct: 20 NDEILLKENHNRWVMFPIEHDTFWIMYKEVENNFWAAEDFIFSDDL---NSLFKLPKPLF 76
Query: 80 LMIKRNLGFFASSE---SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIIT 136
+ L F + + ++ L + + E R + Q +E +H+ T +
Sbjct: 77 NSLFHLLSFHINLDNKWVCRPVDMTLELLSEVQIAEARAFYGFQLTDENIHTETIGTMFQ 136
Query: 137 SLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
L N + K W + + + V+
Sbjct: 137 --------LLNQPLDNTIGQDKITW--------------LYNECEKNKCFFKRVLLVVIS 174
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
+ ++ T L + + + +D +H F + K
Sbjct: 175 KLLFTATFNILRDYLVKEKLLPTFTLALDAVSKDRHIHTRFAHCTFTLL-------QHKM 227
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKGFVGLNA---PSCEQYMQFIANRRCHQIGLEPLF 313
+ ++ EA LE +A++ +P + + YM+++ N G L+
Sbjct: 228 LESDVVQLIKEALKLEYDFANKFLPLSLMAITQMLTDVLRGYMEWVGNNVLMVCGYRTLY 287
Query: 314 KYT 316
Sbjct: 288 SSD 290
>gi|296127719|ref|YP_003634971.1| ribonucleotide reductase [Brachyspira murdochii DSM 12563]
gi|296019535|gb|ADG72772.1| ribonucleotide reductase [Brachyspira murdochii DSM 12563]
Length = 357
Score = 90.2 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 60/353 (16%), Positives = 135/353 (38%), Gaps = 20/353 (5%)
Query: 16 RVNVDDKRMLNARSDVN-QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGL 74
+ +++ ++ + + A + ++ N W EV + D + + L
Sbjct: 7 DKKPESEKIFFGDFGHYIRIDSVSHEIARKLKEASEGNTWFSKEVDYKSDKTRF---SSL 63
Query: 75 TDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQY- 133
+D + K N+ + +S V + + R +++ R A EE +H+ ++ Y
Sbjct: 64 PEDAQRAFKLNIAYQTLMDSGVTSGFSSILNRIVTSSIWSILYARIAIEENIHAESYSYG 123
Query: 134 IITSLGLDEGELFNMYREVPSITAKANWALQ---YTQTLSSPSFTTGTKDADQEFLQDLF 190
+ G E ++ + + ++ L + + + D ++ + L
Sbjct: 124 LSEVFGHQASETLDLVYNDEFVKHRMEKEVELFGNVDELCNLENSNASLDEKKQAVLKLL 183
Query: 191 VFYVVFEGMWFYTGFAQILSLGR--ANKMVGIAEQYQYIMRDE-SLHLNFGIDVINQIKI 247
+ + EG+ F F ++ N + G + + I DE ++H+ G +++ ++
Sbjct: 184 IGIYLLEGIKFPFSFLVTFTINNSYDNAIAGFTKTIKLIAHDELNVHVPTGKNLMTILRK 243
Query: 248 ENPHLWTKEFQ-----QKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIAN 301
E ++ F+ +R M EI +A K G+N+ E ++++ A
Sbjct: 244 EAHQGFSHLFKNGWFYDTARAMTEYTVNEEIKWAKYLFDGKEVSGINSSVSEHFIKYWAG 303
Query: 302 RRCHQIGLEPLF--KYTENPFPWMSEVIDLKK-EKNFFETRVTEYQQGAELKW 351
R I +E + + + W + D+ K ET T YQ+GA
Sbjct: 304 IRLKDIDVETEYLSEKKSDIIDWFNSYRDINKQNAALQETTNTSYQKGALKND 356
>gi|256844583|ref|ZP_05550068.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus 125-2-CHN]
gi|256613124|gb|EEU18328.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus 125-2-CHN]
Length = 276
Score = 90.2 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 46/259 (17%), Positives = 87/259 (33%), Gaps = 20/259 (7%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+K E + N W+P ++P+ +D++ W N L+DD + +I R
Sbjct: 25 GKNMRAINWNDIKDEKDLEVWNRVTQNFWLPEKIPVSNDISSW---NQLSDDWQQLITRT 81
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
++ ++ +A ++ + AF AVH+ ++ I ++L E
Sbjct: 82 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 141
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ A+A + Y V + G Y
Sbjct: 142 EAHEWVVNNDALQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 186
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L K+ A+ + I+RD+ +H + + E ++
Sbjct: 187 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 246
Query: 264 MLHEATLLEIAYAHETMPK 282
L + LE Y HE
Sbjct: 247 FLDKLIDLEKKYLHELYDD 265
>gi|295695705|ref|YP_003588943.1| ribonucleotide reductase [Bacillus tusciae DSM 2912]
gi|295411307|gb|ADG05799.1| ribonucleotide reductase [Bacillus tusciae DSM 2912]
Length = 296
Score = 90.2 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 60/268 (22%), Positives = 111/268 (41%), Gaps = 28/268 (10%)
Query: 34 LLPLKYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
+LP++ Y A W P E+ D WK+ LT D++ +I + F +
Sbjct: 16 ILPMR------LYHKAKKLGIWDPKELDFTQDREDWKT---LTTDQKELILKLCSLFQAG 66
Query: 93 ESLVANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V + ++ + E YL FEEA H+ +F+ + + YR
Sbjct: 67 EEAVTRDLLPLIRVVASEGRLEEEMYLTTFLFEEAKHTESFRLFLDEV--------AEYR 118
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-QIL 209
+I K N+ + + L + + + + ++ EG+ TG+
Sbjct: 119 GDLAIYHKENYKKVFYEYLPQAMERLIHDPSPEAQAEASVTYNMIVEGVLAETGYHGFSN 178
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEAT 269
+LGR KM G+ + +Y+ RDES H+ +G +++++ EN ++W + + E
Sbjct: 179 ALGRQGKMPGLLKAVEYLKRDESRHIGYGTYLLSRLIAENENVW-----KTINNKMGELL 233
Query: 270 LLEIAYAHETMPKG--FVGLNAPSCEQY 295
I +E + +G GL+ QY
Sbjct: 234 PYAIGVVNELLGEGPHPFGLDPEEFVQY 261
>gi|269862477|ref|XP_002650854.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220065515|gb|EED43201.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 122
Score = 90.2 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ + P++Y WE Y + W EV M D + + LT +E+
Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQA 121
IK L FFA+S+ +V N+V + E + + +
Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQILEAKMFYGSKC 122
>gi|256843983|ref|ZP_05549470.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus 125-2-CHN]
gi|256613888|gb|EEU19090.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus 125-2-CHN]
Length = 287
Score = 89.5 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 45/259 (17%), Positives = 86/259 (33%), Gaps = 20/259 (7%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+K E + N W+P ++P+ +D++ W L+DD + +I R
Sbjct: 36 GKNMRAINWNDIKDDKDLEVWNRVTQNFWLPEKIPVSNDISSWNQ---LSDDWQQLITRT 92
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG-- 143
++ ++ +A ++ + AF AVH+ ++ I ++L E
Sbjct: 93 FTGLTLLDTTQSSVGDVAQIKNSQTDIEQAIYANFAFMVAVHARSYGTIFSTLCTSEQIE 152
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
E ++ A+A + Y V + G Y
Sbjct: 153 EAHEWVVNNDTLQARAKAVIPYYTGND---------------PLKSKVAAAIMPGFLLYG 197
Query: 204 GFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
GF L K+ A+ + I+RD+ +H + + E ++
Sbjct: 198 GFYLPFYLAARGKLPNTADIIRLILRDKVIHNYYSGYKYQLAVKKLAPAKQAEMKKFVFD 257
Query: 264 MLHEATLLEIAYAHETMPK 282
L + LE Y HE
Sbjct: 258 FLDKLIDLEKKYLHELYDD 276
>gi|294998842|gb|ADF58156.1| ribonucleoside-diphosphate reductase beta subunit [Pseudomonas
phage JG004]
Length = 348
Score = 89.5 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 60/308 (19%), Positives = 104/308 (33%), Gaps = 26/308 (8%)
Query: 38 KYGWAWEKYLSA-CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
KY E W +E+ ++ D K L + +K L F E +V
Sbjct: 30 KYPVIVELANQQLEEKLWFSSEMKVELDKLNLK--FKLEPHQLHAVKTVLQLFLKYELIV 87
Query: 97 ANNIVL-AIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
+ + R PE + E AVH+ + I LG+D + Y++ P
Sbjct: 88 GEEFWMGKVVRTFPRPEVKLAASILCMMELAVHAEFYNQINVVLGMDTDADYVAYKDDPE 147
Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
+ + +W + + + E ++ FA + S
Sbjct: 148 LMGRMDWLESVLGDEDDVL---------------SVIIFSLTETALLFSSFAILKSFQCN 192
Query: 215 NK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIE--NPHLWTKEFQQKSRTMLHEATL 270
+ IA DE LH ++INQ E P +K R +
Sbjct: 193 GYNDIPVIARGANQSAVDEDLHGVVSAEIINQYYAEIGRPLSEDTRRVEKIRQAIDHVYA 252
Query: 271 LEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID 328
E +P G + G +A + + ++++ N C ++GLE F+ + P W
Sbjct: 253 HECRIVDMAIPGGELNGESAENYKAFVRYRLNVWCRRLGLEDHFENDDTPIKDWFEMNTY 312
Query: 329 LKKEKNFF 336
K +FF
Sbjct: 313 AYKMIDFF 320
>gi|229489433|ref|ZP_04383296.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
erythropolis SK121]
gi|229323530|gb|EEN89288.1| ribonucleoside-diphosphate reductase, beta subunit [Rhodococcus
erythropolis SK121]
Length = 318
Score = 89.5 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 46/266 (17%), Positives = 85/266 (31%), Gaps = 15/266 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
+ W PT++ D W+ LT +++ F + E V +
Sbjct: 28 LFTKGNAKFWNPTDLDFSQDARDWQE---LTSEQQRSATFLCAQFIAGEEAVTEDIQPFM 84
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
YL + FEEA H+ F+ + +GL + +
Sbjct: 85 KAMSTEGRFGDEMYLTQFCFEEAKHTQVFRLWMDEVGLTSD-------LHSYVADNPYYR 137
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIA 221
+ + L S T + ++ + V EG TG+ + + G+
Sbjct: 138 QLFYEELPSSLRILETDPSPVNQVRASVTYNHVIEGSLALTGYYAWQKVCATRGILPGMQ 197
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I DE H+ +G + + H W Q+ M + I + ++
Sbjct: 198 QLVRKIGDDERRHMAWGTFTCRRHVAADDHNWDVVQQRMGELMPMALGM--INWVNDQFE 255
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQI 307
GL+ +Y A RR I
Sbjct: 256 VQPFGLDNQEFLEYAADRAQRRLSAI 281
>gi|254230294|ref|ZP_04923683.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio sp.
Ex25]
gi|151937191|gb|EDN56060.1| ribonucleoside-diphosphate reductase, beta subunit [Vibrio sp.
Ex25]
Length = 242
Score = 89.5 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 47/211 (22%), Positives = 81/211 (38%), Gaps = 9/211 (4%)
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWAL--QYTQTLSSPSFTTGTKDADQEFL 186
F I+ + + + + I A ++ + L+ + D ++
Sbjct: 1 MVFDDIVENEHILKRAKDIAHYYDDLIQATNDYHRYGEGEHVLNGETVKVSLYDLKKKLY 60
Query: 187 QDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIK 246
L + E + FY FA + M G A+ + I RDE+LHLN +IN ++
Sbjct: 61 ICLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIKLIARDEALHLNGTQHMINLLR 119
Query: 247 IENPHLWT----KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIAN 301
+E +Q + EA E +A G +GLN QY+++I N
Sbjct: 120 NGQDDFTFMQIAEEAKQDCFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILSQYVEYITN 179
Query: 302 RRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
R +GL + T NP PW++ +
Sbjct: 180 IRMQAVGLPAAYPEATTNPIPWINAWLSSDN 210
>gi|226305446|ref|YP_002765406.1| hypothetical protein RER_19590 [Rhodococcus erythropolis PR4]
gi|226184563|dbj|BAH32667.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 318
Score = 89.5 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 46/266 (17%), Positives = 85/266 (31%), Gaps = 15/266 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
+ W PT++ D W+ LT +++ F + E V +
Sbjct: 28 LFTKGNAKFWNPTDLDFSQDARDWQE---LTSEQQRSATFLCAQFIAGEEAVTEDIQPFM 84
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
YL + FEEA H+ F+ + +GL + +
Sbjct: 85 KAMSTEGRFGDEMYLTQFCFEEAKHTQVFRLWMDEVGLTSD-------LHSYVADNPYYR 137
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIA 221
+ + L S T + ++ + V EG TG+ + + G+
Sbjct: 138 QLFYEELPSSLRILETDPSPVNQVRASVTYNHVIEGSLALTGYYAWQKVCATRGILPGMQ 197
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
+ + I DE H+ +G + + H W Q+ M + I + ++
Sbjct: 198 QLVRKIGDDERRHMAWGTFTCRRHVAADDHNWDVVQQRMGELMPMALGM--INWVNDQFE 255
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQI 307
GL+ +Y A RR I
Sbjct: 256 VQPFGLDNQEFLEYAADRAQRRLSAI 281
>gi|308183791|ref|YP_003927923.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|308047717|gb|ADO00260.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
plantarum subsp. plantarum ST-III]
Length = 242
Score = 89.1 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 54/251 (21%), Positives = 92/251 (36%), Gaps = 25/251 (9%)
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
+ + + L E++H+ ++ I+TSL E+F P + KA
Sbjct: 1 MRPDVRTRKEAAVLNDFLMMESIHAKSYGTILTSLNDQATVDEVFKWMNNNPRMQYKAKR 60
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
QT ++ V EG+ +YT F L NK+ ++
Sbjct: 61 INDIYQTGNNLEKKV---------------ASVFLEGILYYTNFFTPLWYRGNNKLANLS 105
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E + ++RDES+H + E K F++ +L + E A+ E
Sbjct: 106 EVIKLVIRDESVHGTYLGYKFQLGYNELSATEQKTFKKWMDELLDDLLENEFAFTEEVY- 164
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----NPFPWMSEVIDLKKEKNFFE 337
+GL A +Q++ + AN+ +GLE F E NP M+ + +FF
Sbjct: 165 -APIGL-AEDVKQFVHYNANKALQNMGLESRFPNAEIKDINPIV-MNGISTETANHDFFS 221
Query: 338 TRVTEYQQGAE 348
Y G
Sbjct: 222 QVGAGYLMGNA 232
>gi|326804460|ref|YP_004327264.1| ribonucleotide-diphosphate reductase beta subunit [Pseudomonas
phage PAK_P1]
gi|290873873|gb|ADD65076.1| ribonucleotide-diphosphate reductase beta subunit [Pseudomonas
phage PAK_P1]
Length = 348
Score = 89.1 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 60/308 (19%), Positives = 103/308 (33%), Gaps = 26/308 (8%)
Query: 38 KYGWAWEKYLSA-CNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
KY E W +E+ ++ D K L + +K L F E +V
Sbjct: 30 KYPVIVELANQQLEEKLWFSSEMKVELDKLNLK--FKLEPHQLHAVKTVLQLFLKYELIV 87
Query: 97 ANNIVL-AIYRHLSNPECRQYLLRQAFEE-AVHSHTFQYIITSLGLDEGELFNMYREVPS 154
+ + R PE + E AVH+ + I LG+D + Y++ P
Sbjct: 88 GEEFWMGKVVRTFPRPEVKLAASILCMMELAVHAEFYNQINVVLGMDTDADYVAYKDDPE 147
Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
+ + W + + + E ++ FA + S
Sbjct: 148 LMGRMEWLESVLGDEDDVL---------------SVIIFSLTETALLFSSFAILKSFQCN 192
Query: 215 NK--MVGIAEQYQYIMRDESLHLNFGIDVINQIKIE--NPHLWTKEFQQKSRTMLHEATL 270
+ IA DE LH ++INQ E P +K R +
Sbjct: 193 GYNDIPVIARGANQSAVDEDLHGVVSAEIINQYYAEIGRPLSEDTRRVEKIRQAIDHVYA 252
Query: 271 LEIAYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PWMSEVID 328
E +P G + G +A + + ++++ N C ++GLE F+ + P W
Sbjct: 253 HECRIVDMAIPGGELNGESAENYKAFVRYRLNVWCRRLGLEDHFENDDTPIKDWFEMNTY 312
Query: 329 LKKEKNFF 336
K +FF
Sbjct: 313 AYKMIDFF 320
>gi|70937204|ref|XP_739440.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56516443|emb|CAH87750.1| hypothetical protein PC302623.00.0 [Plasmodium chabaudi chabaudi]
Length = 72
Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 291 SCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
QY++F+A+R +G +F +++NPF WM +I L+ + NFFE RV +YQ+ +
Sbjct: 2 LMSQYIEFVADRLLECLGCSKVF-HSKNPFSWMD-LISLQGKTNFFEKRVADYQKSGVM 58
>gi|153819185|ref|ZP_01971852.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
cholerae NCTC 8457]
gi|126510271|gb|EAZ72865.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
cholerae NCTC 8457]
Length = 171
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KE 256
FY FA + M G A+ + I RDE+LHL ++N ++ +E
Sbjct: 3 FYVSFACSFAFAERELMEGNAKIIKLIARDEALHLTGTQHMLNLLRNGMDDFTFLQVAEE 62
Query: 257 FQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFK- 314
+Q+S + EA E +A G +GLN QY+++I N R +GLEP +
Sbjct: 63 CKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAYPA 122
Query: 315 YTENPFPWMSEVIDLKK 331
T NP PW++ +
Sbjct: 123 ATNNPIPWINAWLSSDN 139
>gi|66802406|ref|XP_629985.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4]
gi|60463390|gb|EAL61578.1| ribonucleotide reductase-related [Dictyostelium discoideum AX4]
Length = 257
Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 22/191 (11%)
Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
W+ Y N W+ E+ DD W+ LT+DER L FF +S ++ N+
Sbjct: 86 DIWKMYKKTLANQWVVEEIESSDDGLDWEK--KLTNDERDFFSNVLAFFVASCGIINKNL 143
Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG---ELFNMYREVPSITA 157
+ PE + + Q + +HS T+ +I + D+ +LFN +P +
Sbjct: 144 N-RFMSKVQIPEAKCFYNYQIHIKYLHSETYSLLIETCIKDKNIKDKLFNAIETIPCVKK 202
Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM 217
KA WAL++ + V V FE ++F F I L + + M
Sbjct: 203 KAEWALKWINES----------------FEKRLVALVAFESIFFSGSFRIISLLKKRSLM 246
Query: 218 VGIAEQYQYIM 228
G+ + I
Sbjct: 247 QGLTFSNELIN 257
>gi|163784572|ref|ZP_02179421.1| ribonucleotide-diphosphate [Hydrogenivirga sp. 128-5-R1-1]
gi|159880158|gb|EDP73813.1| ribonucleotide-diphosphate [Hydrogenivirga sp. 128-5-R1-1]
Length = 139
Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHE 267
++ KM + + ++ DESLHL GI+ I I ENP + +F + R + +
Sbjct: 1 FAMKDTGKMKNVVSGVELVLIDESLHLQNGIEAILTIIEENPEIVDDIKFVENIRDTIID 60
Query: 268 ATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326
A LE+ Y G++ E YM++IA+RR ++G +P F +NP ++ +
Sbjct: 61 AVELELNYLKTKFGGTTIFGVSYKELEMYMKYIADRRLEELGFDPQFNIQQNPLKFLQKE 120
Query: 327 IDLKKEKNFFETRVTEYQ 344
D+KK NFFE TEY
Sbjct: 121 -DVKKLTNFFEVSSTEYT 137
>gi|29135241|ref|NP_803871.1| ORF305 [Pseudomonas phage phiKZ]
gi|18996770|gb|AAL83206.1|AF399011_305 PHIKZ305 [Pseudomonas phage phiKZ]
Length = 387
Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 63/349 (18%), Positives = 126/349 (36%), Gaps = 31/349 (8%)
Query: 8 SPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLAL 67
I K + +L + + Y WE Y W E L
Sbjct: 9 KKIFNVAKSDYHLPEIILGDDPGLLDSIHTHYPKMWELYKRLKMLDWDELEFDFSTCLVE 68
Query: 68 WKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVH 127
+++ + T D M+ + L + ++S+ + +IV + +++ +R E VH
Sbjct: 69 FETCDKSTYD---MMIKTLAWQWEADSVASRSIVNILSPVMTDSRVWAGYVRINDNEDVH 125
Query: 128 SHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS--PSFTTGTKDADQEF 185
+ T+ I+ + D + + V + + ++ DQE
Sbjct: 126 ALTYSEIVRNSFKDPKVILDEILRVEEAQERMVAVARTMGEAHDAVHAYALNQVPNDQEL 185
Query: 186 LQDLFVFYV---VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE-SLHLNFGIDV 241
+F+F++ E + F FA ++GR IA + I +DE +H +G +V
Sbjct: 186 YNKVFMFFIALYFLERIQFMASFAVTFAIGRTGAFQQIAAAVKKIAQDEFEIHAQYGQEV 245
Query: 242 INQIKI-ENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG--FVGLNAPSCEQYMQF 298
I + E L + + K +L E E+ + + +G G+NA ++ F
Sbjct: 246 IRALLATERGKLAYSQCKDKIIELLWEIVKTEVTWINYLFSEGRELTGVNATKLINWVLF 305
Query: 299 IANRRCHQI------------------GLEPLFKYTENPFPWMSEVIDL 329
AN + G + ++ +NP +M + +D+
Sbjct: 306 NANAAATFLSIENDVVEQYQVEFKESAGFDFVWP-EKNPLLYMEDYLDI 353
>gi|297521777|ref|ZP_06940163.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
OP50]
Length = 174
Score = 87.5 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL-- 252
E + FY FA + M G A+ + I RDE+LHL ++N + ++P +
Sbjct: 3 EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAE 62
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+E +Q+ + +A E +A G +GLN QY+++I N R +GL+
Sbjct: 63 IAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL 122
Query: 312 LFKYTENPFPWMSEVI 327
F+ NP PW++ +
Sbjct: 123 PFQTRSNPIPWINTWL 138
>gi|213646443|ref|ZP_03376496.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. J185]
gi|289824706|ref|ZP_06544205.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
Length = 240
Score = 87.1 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 6/167 (3%)
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
T T++ + ++ ++ L + E + FY FA + M G A+ +
Sbjct: 39 THTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIR 97
Query: 226 YIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETMP 281
I RDE+LHL ++N + +++P + +E +Q+ + +A E +A
Sbjct: 98 LIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLFR 157
Query: 282 KG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
G +GLN QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 158 DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 204
>gi|256111767|ref|ZP_05452742.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
melitensis bv. 3 str. Ether]
Length = 190
Score = 87.1 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 8/165 (4%)
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
V E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 25 SVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEE 84
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+E + + +L E E+ Y VGL ++++ + AN+ +G E L
Sbjct: 85 KRQEIKDFAFELLLELYDNEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEAL 141
Query: 313 FKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
F NP + + + +FF + Y + + +
Sbjct: 142 FPAEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDE 186
>gi|13274105|emb|CAC33823.1| ribonucleotide reductase beta-subunit [Corynebacterium glutamicum]
Length = 201
Score = 87.1 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/217 (17%), Positives = 81/217 (37%), Gaps = 27/217 (12%)
Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
+ F E ++ KA L Y + + V+ E FY
Sbjct: 1 NDAFRWSEENENLQRKAKIILSYYEGDD---------------PLKRKIASVILESFLFY 45
Query: 203 TGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
+GF + +K+ A+ + I+RDE++H + + + +E ++ +
Sbjct: 46 SGFYLPMYWSSHSKLTNTADVIRLIIRDEAVHGYYIGYKYQKAVAKETPERQEELKEYTF 105
Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE----- 317
+L++ E Y+ + +G ++++++ AN+ + +G E LF E
Sbjct: 106 DLLYDLYDNETQYSEDLYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPADETKVSP 162
Query: 318 NPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
N +S + + +FF + Y + + D
Sbjct: 163 NILSALSP--NADENHDFFSGSGSSYVIGKAENTEDD 197
>gi|323945045|gb|EGB41110.1| nrdB protein [Escherichia coli H120]
gi|333002093|gb|EGK21659.1| ribonucleoside-diphosphate reductase 1 subunit beta domain protein
[Shigella flexneri K-218]
Length = 178
Score = 87.1 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL-- 252
E + FY FA + M G A+ + I RDE+LHL ++N + ++P +
Sbjct: 7 EAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAE 66
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+E +Q+ + +A E +A G +GLN QY+++I N R +GL+
Sbjct: 67 IAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDL 126
Query: 312 LFKYTENPFPWMSEVI 327
F+ NP PW++ +
Sbjct: 127 PFQTRSNPIPWINTWL 142
>gi|265993236|ref|ZP_06105793.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
melitensis bv. 3 str. Ether]
gi|262764106|gb|EEZ10138.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
melitensis bv. 3 str. Ether]
Length = 189
Score = 86.8 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 8/165 (4%)
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
V E FY+GF + K+ A+ + I+RDE++H + +
Sbjct: 24 SVFLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKFQRALEVLSEE 83
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPL 312
+E + + +L E E+ Y VGL ++++ + AN+ +G E L
Sbjct: 84 KRQEIKDFAFELLLELYDNEVRYTEALYDG--VGLT-EDVKKFLHYNANKALMNLGYEAL 140
Query: 313 FKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQ--QGAELKWD 352
F NP + + + +FF + Y + + +
Sbjct: 141 FPAEACKVNPAILSALSPNADENHDFFSGSGSSYVIGKAVATEDE 185
>gi|297520407|ref|ZP_06938793.1| ribonucleotide-diphosphate reductase subunit beta [Escherichia coli
OP50]
Length = 225
Score = 86.8 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 4/159 (2%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 25 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 81
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 82 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 141
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
+II ++ D +F+ I +A Y L
Sbjct: 142 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIE 180
>gi|333001770|gb|EGK21336.1| ribonucleoside-diphosphate reductase 1 subunit beta domain protein
[Shigella flexneri K-218]
Length = 197
Score = 86.8 bits (213), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 4/159 (2%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
+II ++ D +F+ I +A Y L
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIE 163
>gi|323945044|gb|EGB41109.1| nrdB protein [Escherichia coli H120]
Length = 197
Score = 86.4 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 4/159 (2%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L + E+ + NL + +S+ + +A+ +S PE ++ AF E +HS ++
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
+II ++ D +F+ I +A Y L
Sbjct: 125 HIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIE 163
>gi|289810170|ref|ZP_06540799.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 215
Score = 86.0 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 8/162 (4%)
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
V E FY+GF + K+ A+ + I+RDE++H + + +
Sbjct: 50 SVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAI 109
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+E + + +L E EI Y G+V + ++ + AN+ +G E
Sbjct: 110 EREELKLFALDLLMELYDNEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEA 165
Query: 312 LFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
LF NP + + + +FF + Y G ++
Sbjct: 166 LFPPEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVE 207
>gi|32709427|gb|AAP86732.1| NrdB [Enterobacteria phage RB3]
Length = 258
Score = 86.0 bits (211), Expect = 9e-15, Method: Composition-based stats.
Identities = 43/260 (16%), Positives = 89/260 (34%), Gaps = 38/260 (14%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ + + W P EV +
Sbjct: 1 MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL-------------- 169
E +HS ++ +I+ +L D ++F+ +I +A +Y +
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKTREWENAKEFV 174
Query: 170 ------SSPSFTTGTKDADQEFLQDLFVFYVV--------FEGMWFYTGFAQILSLGRAN 215
F + + + + E + FY FA + +
Sbjct: 175 ELAKESPDADFRLNRAIKQEAEAKRALMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234
Query: 216 -KMVGIAEQYQYIMRDESLH 234
M G A+ ++I RDE LH
Sbjct: 235 EIMEGNAKIMKFIARDEQLH 254
>gi|312140626|ref|YP_004007962.1| ribonucleoside-diphosphate reductase nrdb [Rhodococcus equi 103S]
gi|325675746|ref|ZP_08155430.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
ATCC 33707]
gi|311889965|emb|CBH49283.1| ribonucleoside-diphosphate reductase NrdB [Rhodococcus equi 103S]
gi|325553717|gb|EGD23395.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus equi
ATCC 33707]
Length = 323
Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/267 (17%), Positives = 92/267 (34%), Gaps = 18/267 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
++ W P ++ D W S LT +E+ F + E V +
Sbjct: 28 LFVKGNAKFWNPADIDFTQDAEDWAS---LTSEEKRSSTYLCTQFIAGEEAVTEDIQPFM 84
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
YL + FEEA H F+ + ++GLD P + ++
Sbjct: 85 KAMAAEGRFNDEMYLTQFCFEEAKHVQVFRRWMDAVGLD-------GDLHPFVAENPHYR 137
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIA 221
+ + L T + ++ + V EG TG+ + G+
Sbjct: 138 TLFYEELPRSLRILETDPSPANQIRASVTYNHVIEGSLALTGYYAWQRVCTERGIFPGMQ 197
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E + I DE H+ +G + + QQ+ +L A + I + ++
Sbjct: 198 ELVRRIGDDERRHMAWGTFTCRRHVAADDS-NWDLVQQRMGELLPHALDM-IQWVNDQFE 255
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ G++ Y+++ A+R ++G
Sbjct: 256 EPPFGIDPAV---YLEYAADRAQRRLG 279
>gi|213612975|ref|ZP_03370801.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
Length = 205
Score = 85.6 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 8/162 (4%)
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
V E FY+GF + K+ A+ + I+RDE++H + + +
Sbjct: 40 SVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAI 99
Query: 253 WTKEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEP 311
+E + + +L E EI Y G+V + ++ + AN+ +G E
Sbjct: 100 EREELKLFALDLLMELYDNEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEA 155
Query: 312 LFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
LF NP + + + +FF + Y G ++
Sbjct: 156 LFPPEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVE 197
>gi|328958551|ref|YP_004375937.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
sp. 17-4]
gi|328674875|gb|AEB30921.1| ribonucleoside-diphosphate reductase subunit beta [Carnobacterium
sp. 17-4]
Length = 328
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/271 (13%), Positives = 89/271 (32%), Gaps = 19/271 (7%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ + W+ T +P+ ++ + W+ L ++ER + + L AS + + + I
Sbjct: 32 WEKLTSLFWLDTRIPVTNEKSQWED---LPENERKVFLKTLAGLASVATFQSERGFMVIE 88
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
+ F E+VH+ + I+ + + WA
Sbjct: 89 EGEHTQQEAAIYNNIQFIESVHAKAYNTILIGFNEPK-----------EVDDILIWADNN 137
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
+ + + ++ EG+ Y+G L + +AE +
Sbjct: 138 IELKYRLDRILEVYKTGTTLQKRVA--NLILEGVLTYSGLFTPLLYWTQKRFTSVAEIIK 195
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
++ +ESLH + E E + + + + E+ Y + +
Sbjct: 196 LVLTNESLHCFYISHKFQLGFSELSQQEQTELRDWTFDLFVDLVNNELNYIEQIYYRTDW 255
Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYT 316
+ +++ AN +G + ++ +
Sbjct: 256 ---LEEVKDFIRQQANNALKSLGFDTIYPES 283
>gi|296167463|ref|ZP_06849862.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295897211|gb|EFG76818.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 305
Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 20/264 (7%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+ LT+DER R F + E V ++ R
Sbjct: 19 GNAKFWNPADIDFSRDRADWEQ---LTEDERHYAIRLCAEFIAGEEAVTEDIQPFMSAMR 75
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H F+ + ++G+ E + + +
Sbjct: 76 VEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTED-------LHQYLDDIPTYRTIFY 128
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
+ L + ++ + + EGM TG+ + + G+ E +
Sbjct: 129 EELPDCLNALSVDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVR 188
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY-AHETMPKGF 284
I DE H+ +G + + W + + M L+E + ++ MP G
Sbjct: 189 RIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFSLYDPMPFGL 248
Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
S +++MQ+ A++ + G
Sbjct: 249 ------SVDEFMQYAADKGMRRFG 266
>gi|301331892|gb|ADK70922.1| U27.5 [Elephant endotheliotropic herpesvirus 2]
Length = 301
Score = 84.8 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 63/306 (20%), Positives = 116/306 (37%), Gaps = 27/306 (8%)
Query: 41 WAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
+ Y + N W+ ++ L +K L + + K F +E LV N+
Sbjct: 12 DFRQLYRTVTENRWLEGQISF---LNDYKHILLLDEKTKEYYKFIFCFLGMAEHLVNFNL 68
Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
I R L +P+ Y + Q E VH+ T++ I+ ++ + +I A+
Sbjct: 69 FDMIER-LEDPDVIHYYIEQMSIECVHARTYRRILNIFYDNDEK---------AIMCAAD 118
Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
+ L+ L SF T + + V ++ EG++F + F I L G
Sbjct: 119 FYLKDPALLKKISFLEKTIRECDTLGKKIIVL-ILIEGIFFLSSFVSIAMLRTIG-FDGT 176
Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
E YI RDES+H + + ++ + +E + +
Sbjct: 177 TEANTYICRDESIHTTAATKLYLNYV----TPENRPSYSFIYSLFSDVIRIEKEFIN-AK 231
Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFE 337
G +N ++ +A++ +I ++PL+ P P + ++K FFE
Sbjct: 232 VDGVGLINKKVIFDTLEGVADQLLARINMQPLYATQIPNNCPLP----LSTIEKNVCFFE 287
Query: 338 TRVTEY 343
R TEY
Sbjct: 288 KRNTEY 293
>gi|111023180|ref|YP_706152.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
jostii RHA1]
gi|123045538|sp|Q0S392|RIR2H_RHOSR RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|110822710|gb|ABG97994.1| probable ribonucleoside-diphosphate reductase [Rhodococcus jostii
RHA1]
Length = 324
Score = 84.8 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/266 (16%), Positives = 86/266 (32%), Gaps = 15/266 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
+ W PT++ D W+ GL +++ + F + E V +
Sbjct: 34 LFTKGNAKFWNPTDLDFSRDAEDWE---GLNSEQQRNSTYLVAQFIAGEEAVTEDIQPFM 90
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
YL + FEEA H+ F+ + ++GL P + +
Sbjct: 91 KAMAAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGLTRD-------LHPFVAENPYYR 143
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIA 221
+ + L T + ++ + V EG TG+ + + G+
Sbjct: 144 QLFYEELPGSLKVLETDPSPVNQVRASVTYNHVIEGSLALTGYYAWQKVCTTRGILPGMQ 203
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E + I DE H+ +G + + W ++ + M + I + ++
Sbjct: 204 ELVRRIGDDERRHMAWGTFTCRRHVAADDSNWGVVQERMAELMPLALGM--IDWVNKQFE 261
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQI 307
GL+ Y A RR I
Sbjct: 262 VQPYGLDDQEFIAYAADRAQRRLGAI 287
>gi|257057366|ref|YP_003135198.1| ribonucleotide-diphosphate reductase subunit beta
[Saccharomonospora viridis DSM 43017]
gi|256587238|gb|ACU98371.1| ribonucleotide reductase, beta subunit [Saccharomonospora viridis
DSM 43017]
Length = 328
Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 55/288 (19%), Positives = 100/288 (34%), Gaps = 29/288 (10%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
D N L PL+ + W P ++ D W+ LTD +RL
Sbjct: 19 RGGLDWNTL-PLR------LFAKGNRKFWDPADIDFSVDARDWE---KLTDRQRLSATYL 68
Query: 86 LGFFASSESLVAN--NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
FA+ E V L YL + FEEA H+ F+ + ++GL +
Sbjct: 69 CAQFAAGEEAVTEDIQPFLRAMAAEGRLGDEMYLAQFCFEEAKHTEAFRRWMDAVGLTDD 128
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
P + ++ + + L + + ++ + V EG T
Sbjct: 129 -------LHPFVAENPHYRKLFYEELPESLGVLAEDPSPRNQVRASVTYNHVIEGSLALT 181
Query: 204 GFAQILSLG-RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
G+ L + G+ E + + DE H+ +G + + LW Q+
Sbjct: 182 GYYAWQKLCVSRGILPGMRELVRRVSDDERRHMAWGTFTCRRHVAADDSLWEVVQQRMDE 241
Query: 263 TMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN---RRCHQI 307
+ H ++E + + + G NA ++++ A+ RR I
Sbjct: 242 LLPHALGMIE--WVNRQFDESSDGDNAE----FVRYAADRAQRRLSAI 283
>gi|134097201|ref|YP_001102862.1| ribonucleotide-diphosphate reductase subunit beta
[Saccharopolyspora erythraea NRRL 2338]
gi|291005341|ref|ZP_06563314.1| ribonucleotide-diphosphate reductase subunit beta
[Saccharopolyspora erythraea NRRL 2338]
gi|238055312|sp|A4F7B2|RIR2H_SACEN RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|133909824|emb|CAL99936.1| ribonucleoside-diphosphate reductase beta chain [Saccharopolyspora
erythraea NRRL 2338]
Length = 317
Score = 84.5 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/263 (17%), Positives = 83/263 (31%), Gaps = 14/263 (5%)
Query: 48 SACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIY 105
W P ++ D W+ GLT++ER + F + E V +A
Sbjct: 31 KGNAKFWDPADIDFTRDAEDWQ---GLTEEERRSVAMLCSQFIAGEEAVTQDLQPFMAAM 87
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
YL + FEEA H+ F+ + ++GL + + +
Sbjct: 88 AAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGL-------TGDLHSHVAENPGYRAIF 140
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGIAEQY 224
+ L + ++ + V EG TG+ + R + G+ E
Sbjct: 141 YEELPRSLNALHDDPSPANQVRASVTYNHVVEGTLALTGYFAWQKICRSRGILPGMQEVV 200
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
+ I DE H+ +G + + W +Q + T ++ F
Sbjct: 201 RRIGDDERRHMAWGTFTCRRHVAADESNWDVVQEQMQHLLPLAVTQIQWRPEDAPEETPF 260
Query: 285 VGLNAPSCEQYMQFIANRRCHQI 307
L+ Y A RR I
Sbjct: 261 R-LDIDELAAYASDRAGRRLGAI 282
>gi|207108882|ref|ZP_03243044.1| ribonucleotide-diphosphate reductase subunit beta [Helicobacter
pylori HPKX_438_CA4C1]
Length = 79
Score = 83.7 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE-K 333
+GL + EQY+QF+A+ R ++G+ ++ ++P W+ ++
Sbjct: 1 MGDYITQGKILGLTSSLIEQYIQFLADSRLSKVGIAKVYGV-QHPIKWVESFSSFNEQRS 59
Query: 334 NFFETRVTEYQQGAELKWD 352
NFFE RV+ Y +G+ D
Sbjct: 60 NFFEARVSNYAKGSVSFDD 78
>gi|120404438|ref|YP_954267.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
vanbaalenii PYR-1]
gi|238055311|sp|A1TAR1|RIR2H_MYCVP RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|119957256|gb|ABM14261.1| ribonucleotide reductase [Mycobacterium vanbaalenii PYR-1]
Length = 312
Score = 83.7 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 52/263 (19%), Positives = 93/263 (35%), Gaps = 18/263 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+S LTD ER R F + E V +A R
Sbjct: 27 GNAKFWDPADIDFSRDRADWES---LTDLERDWATRLCAEFIAGEEAVTQDIQPFMAAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ E + + +
Sbjct: 84 AEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGITED-------LQGYLDELPAYCQMFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
+ L + T + ++ + V EGM TG+ + + G+ E +
Sbjct: 137 EELPASLDALATDPSPAAQVRASVTYNHVIEGMMALTGYYAWHRICVDRGILPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I DE H+ +G + + W + + + E +A +
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWAVFETRMNELIPLALRNTEDGFALY--DEVPF 254
Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
GL E++ Q+ A++ + G
Sbjct: 255 GLT---MEEFQQYAADKGMRRFG 274
>gi|258510152|ref|YP_003183586.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257476878|gb|ACV57197.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 317
Score = 83.3 bits (204), Expect = 5e-14, Method: Composition-based stats.
Identities = 57/278 (20%), Positives = 108/278 (38%), Gaps = 33/278 (11%)
Query: 34 LLPLKYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
+LP++ Y A W P ++ D W+ G+ + ER +I R F +
Sbjct: 22 ILPMR------LYHKAKKLGTWDPRDIDFTKDKEDWQ---GMNEAERRVILRLCSLFVAG 72
Query: 93 ESLVANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E V + ++ E YL FEEA H+ F+ + + + +L
Sbjct: 73 EEAVTLDLLPLIMAVAREGRLEEEMYLTTFLFEEAKHTEVFRRFLDEVAGETSDL----- 127
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FAQIL 209
S+ K ++ + + L + + + + +V EG+ TG +A
Sbjct: 128 ---SVFHKDHYRKIFYEYLPQAMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFYT 184
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK--------- 260
+L + NK+ G+ + + + RDES H+ +G +++++ EN H+W ++
Sbjct: 185 ALQKENKLPGLIQAIRLLQRDESRHIGYGTYLLSRLISENAHIWDVVNRRINLLLPHAIG 244
Query: 261 -SRTMLHEATLLEIAYAHETMPKGFV--GLNAPSCEQY 295
+ + E E E + V GLN Y
Sbjct: 245 VVQDLNAELDTEEAQKLAEELGITDVPFGLNPDEFVAY 282
>gi|226365685|ref|YP_002783468.1| ribonucleotide-diphosphate reductase subunit beta [Rhodococcus
opacus B4]
gi|226244175|dbj|BAH54523.1| hypothetical protein [Rhodococcus opacus B4]
Length = 324
Score = 82.9 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 45/266 (16%), Positives = 86/266 (32%), Gaps = 15/266 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
+ W PT++ D W+ GL +++ + F + E V +
Sbjct: 34 LFTKGNAKFWNPTDLDFSRDAEDWE---GLNSEQQRNSTYLVAQFIAGEEAVTEDIQPFM 90
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
YL + FEEA H+ F+ + ++GL P + +
Sbjct: 91 KAMAAEGRFGDEMYLTQFCFEEAKHTQVFRLWMDAVGLTRD-------LHPFVADNPFYR 143
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIA 221
+ + L T + ++ + V EG TG+ + + G+
Sbjct: 144 QLFYEELPGSLKVLETDPSPANQVRASVTYNHVIEGSLALTGYYAWQKVCTTRGILPGMQ 203
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E + I DE H+ +G + + W ++ + M + I + ++
Sbjct: 204 ELVRRIGDDERRHMAWGTFTCRRHVAADDGNWGVVQERMAELMPLALGM--IDWVNKQFE 261
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQI 307
GL+ Y A RR I
Sbjct: 262 VQPYGLDDQEFIAYAADRAQRRLGAI 287
>gi|218291056|ref|ZP_03495088.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1]
gi|218239010|gb|EED06216.1| ribonucleotide reductase [Alicyclobacillus acidocaldarius LAA1]
Length = 317
Score = 82.9 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 56/279 (20%), Positives = 106/279 (37%), Gaps = 33/279 (11%)
Query: 33 QLLPLKYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
+LP++ Y A W P ++ D WK + + ER +I R F +
Sbjct: 21 NILPMR------LYHKAKKLGVWDPRDIDFSKDKEDWK---AMNEAERRVILRLCSLFVA 71
Query: 92 SESLVANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
E V + ++ E YL FEEA H+ F+ + + + +L
Sbjct: 72 GEEAVTLDLLPLIMAVAREGRLEEEMYLTTFLFEEAKHTEVFRRFLDEVAGESSDL---- 127
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FAQI 208
S K ++ + + L + + + + +V EG+ TG +A
Sbjct: 128 ----STFHKDHYRKIFYEYLPQAMGRLVHDPSPEAQAEASVTYNMVVEGVLAETGYYAFY 183
Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ--------- 259
+L + NK+ G+ + + + RDES H+ +G +++++ EN ++W ++
Sbjct: 184 TALQKENKLPGLIQAIRLLQRDESRHIGYGTYLLSRLISENEYIWDVVNRRTNLLLPHAI 243
Query: 260 -KSRTMLHEATLLEIAYAHETMPKGFV--GLNAPSCEQY 295
+ + E E E + V GLN Y
Sbjct: 244 GVVQDLNAELDTEEAQKLAEELGITDVPFGLNPDEFVAY 282
>gi|226331040|ref|ZP_03806558.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198]
gi|225201835|gb|EEG84189.1| hypothetical protein PROPEN_04970 [Proteus penneri ATCC 35198]
Length = 182
Score = 82.9 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 20/191 (10%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ ++ E + N W+P ++P+ +D+ W + LT E+ + R
Sbjct: 10 NAINWNRIEDEKDLEVWNRLTMNFWLPEKIPLSNDIPSWST---LTQAEKQLTIRVFTGL 66
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ + P L F EAVH+ ++ I ++L L E +
Sbjct: 67 TLLDTIQNTVGAPTLMPDALTPHEEAVLSNICFMEAVHARSYSSIFSTLCLTTDVDEAYR 126
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
E P + KA L+Y Q V E FY+GF
Sbjct: 127 WSEENPYLQKKAEIILRYYQDEDPLKKKI---------------ASVFLESFLFYSGFYL 171
Query: 208 ILSLGRANKMV 218
+ K+
Sbjct: 172 PMYWSSRGKIN 182
>gi|146189565|emb|CAM91784.1| hypothetical protein [Platynereis dumerilii]
Length = 87
Score = 82.9 bits (203), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 40 GWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN 99
W+ Y A + W EV + D+A W+S L DER I L FFA+S+ +V N
Sbjct: 1 PDIWQFYKRAEASFWTAEEVDLSKDVAQWES---LKKDERHFISHVLAFFAASDGIVNEN 57
Query: 100 IVLAIYRHLSNPECRQYLLRQAFEEAVHSH 129
+V + + E R + Q E +HS
Sbjct: 58 LVERFSKEVQVTEARFFYGFQIAIENIHSE 87
>gi|269863385|ref|XP_002651202.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|269865188|ref|XP_002651836.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220063788|gb|EED42221.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220064957|gb|EED42855.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 111
Score = 82.5 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
+ +L+ + P++Y WE Y + W EV M D + + LT +E+
Sbjct: 26 EPLLDEAKKRYVIFPIQYPEIWEFYKMHESTFWTVEEVDMTFDCEHFST---LTPNEQFF 82
Query: 82 IKRNLGFFASSESLVANNIVLAIYRHLSN 110
IK L FFA+S+ +V N+V +
Sbjct: 83 IKYVLAFFAASDGIVNENLVERFSSEVQI 111
>gi|302321458|gb|ADL16651.1| RNR2 [Abalone herpesvirus Victoria/AUS/2007]
Length = 642
Score = 82.5 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 64/320 (20%), Positives = 120/320 (37%), Gaps = 44/320 (13%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
+Y + N W E+ DLA+W L + R IK L F A + +V
Sbjct: 73 RYPVLADLADKLQANQWKANEIEPSKDLAVWVD---LPEPVRKCIKGALTFVAVGDIVVK 129
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL------FNMYRE 151
I + + EC ++ Q E+ H + +T+ ++ EL + E
Sbjct: 130 EAIPMHMSNFPLT-ECGKFFQEQLINESEHQKLYTKFLTTFAHNKEELETLMHAYTNVEE 188
Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
+ AK + + ++ S + LF ++ G
Sbjct: 189 FAPLKAKVDLINEIYKSGSRAEQVLYQTVMELIGFCSLFSIMLMPTG------------- 235
Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
+ + E Q + DE+LH +F + N + + +K + ++ +A +
Sbjct: 236 -----LKTLIEGNQSVRNDETLHGSFYAALHN-------IMPDRASPEKVKEIIVKAVEI 283
Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-------KYTENPFPWMS 324
EIA+A + + +N S + +++ AN C +G+EP++ P +M+
Sbjct: 284 EIAFAMSIVTEDLEHINPSSMQLHIKATANLCCEFLGVEPIYFDRWTKLPVVS-PLSYMN 342
Query: 325 EVIDLKKEKNFFETRVTEYQ 344
L+K NFFE R +Y
Sbjct: 343 NYETLQKF-NFFEVRNMDYS 361
>gi|196040724|ref|ZP_03108023.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
NVH0597-99]
gi|196028514|gb|EDX67122.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
NVH0597-99]
Length = 193
Score = 82.5 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 12/187 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E E+F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDEIFDWVDTHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKSEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMR 229
I+R
Sbjct: 187 IINLIIR 193
>gi|229172092|ref|ZP_04299657.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
MM3]
gi|228611435|gb|EEK68692.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
MM3]
Length = 193
Score = 82.5 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 12/187 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTWAQ---LSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIV 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMR 229
I+R
Sbjct: 187 IINLIIR 193
>gi|113951975|gb|AAP86729.2| NrdB [Enterobacteria phage RB23]
Length = 251
Score = 82.1 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/257 (14%), Positives = 90/257 (35%), Gaps = 9/257 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ + + W P EV +
Sbjct: 1 MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A +Y + + AD
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKTRYWENAKADI 174
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
E+ +++ V E + + + + + + + I S F
Sbjct: 175 EYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234
Query: 244 QIKIENPHLWTKEFQQK 260
+I N + + +
Sbjct: 235 EIMEGNAKIMKFIARDE 251
>gi|206968243|ref|ZP_03229199.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
AH1134]
gi|228951833|ref|ZP_04113931.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|228957726|ref|ZP_04119470.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|229069003|ref|ZP_04202296.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
F65185]
gi|206737163|gb|EDZ54310.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
AH1134]
gi|228714115|gb|EEL65997.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
F65185]
gi|228801969|gb|EEM48842.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228807756|gb|EEM54277.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus
thuringiensis serovar kurstaki str. T03a001]
Length = 193
Score = 82.1 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 69/187 (36%), Gaps = 12/187 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F+ P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMR 229
I+R
Sbjct: 187 IINLIIR 193
>gi|217958930|ref|YP_002337478.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
AH187]
gi|222095086|ref|YP_002529146.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
Q1]
gi|229138141|ref|ZP_04266739.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
BDRD-ST26]
gi|229195650|ref|ZP_04322416.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
m1293]
gi|217065393|gb|ACJ79643.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
AH187]
gi|221239144|gb|ACM11854.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
Q1]
gi|228587899|gb|EEK45951.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
m1293]
gi|228645486|gb|EEL01720.1| Ribonucleoside-diphosphate reductase beta chain [Bacillus cereus
BDRD-ST26]
Length = 193
Score = 81.8 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 12/187 (6%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ W E+ + D W L+ +E++ KR LG ++ + +
Sbjct: 17 FWKQNIAQFWTEEEIAVSSDKNTW---VQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLV 73
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWA 162
HL N + + L E VH+ ++ +I T+L +E ++F P + KA
Sbjct: 74 LVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGII 133
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
Y + L P T V V E FY+GF L L K+ E
Sbjct: 134 TSYYRRLLKPEVTKKEL-------YMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGE 186
Query: 223 QYQYIMR 229
I+R
Sbjct: 187 IINLIIR 193
>gi|329575046|gb|EGG56598.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecalis TX1467]
Length = 212
Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/207 (19%), Positives = 78/207 (37%), Gaps = 20/207 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W++ L+D E+ + G +++ + + + +
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWRT---LSDLEKTTVGYVFGGLTLLDTVQSESGMDQLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ P L F E+VH+ ++ I ++L + ++F + KA
Sbjct: 79 NDVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKKEIDDIFEWTNTNKHLQYKAERIN 138
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
+ + + V E FY+GF L NK+ +AE
Sbjct: 139 EIYKNGTPLEKKI---------------ASVFLETFLFYSGFYTPLYYLGNNKLANVAEI 183
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENP 250
+ I+RDES+H + E P
Sbjct: 184 IKLIIRDESVHGTYIGYKFQLGFNELP 210
>gi|297563117|ref|YP_003682091.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296847565|gb|ADH69585.1| ribonucleotide-diphosphate reductase subunit beta [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 331
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/275 (17%), Positives = 94/275 (34%), Gaps = 29/275 (10%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIV 101
+ + W P ++ + D W+ GL + R I R FF + E V
Sbjct: 35 KLFAKGNARFWNPADIDLSRDAEDWE---GLGEGARARILRLCAFFVAGEEAVTEDIQPF 91
Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
L YL + AFEEA H F+ + +LG+ E + A +
Sbjct: 92 LRAMAAEGRLGDEMYLTQFAFEEARHVQAFRLWLDALGVHED-------LHGYVDANPGY 144
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA-NKMVGI 220
+ + L S + + ++ + V EG TG+ L A + G+
Sbjct: 145 RTLFYEELPSSLEALLEDPSPRNQVRASVTYNHVIEGSLALTGYYAWNHLCTALDVFPGM 204
Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
+ I DE H+ +G + + W ++ + + + T+
Sbjct: 205 RRIVRMIGDDERRHMAWGTFTCRRHVAADDANW---------DVVRDRLDELLPHVTSTV 255
Query: 281 PKGFVGLNAPSCEQY-------MQFIANRRCHQIG 308
+G P+ +Y +++ +R ++G
Sbjct: 256 ERGEEPSGDPATRRYELPPGELVRYAGDRALRRLG 290
>gi|113951985|gb|AAP86733.2| NrdB [Enterobacteria phage RB61]
Length = 251
Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/257 (16%), Positives = 89/257 (34%), Gaps = 38/257 (14%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ + + W P EV +
Sbjct: 1 MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHKVFEDLTEKQLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A +Y + + AD
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDKAIMKRAESIGRYYDDVIEKTRYWQNAKADI 174
Query: 184 EFLQD----------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN 215
E+ ++ E + FY FA + +
Sbjct: 175 EYQKEINADEDDIKDAIEHEMYWKRELMRSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234
Query: 216 -KMVGIAEQYQYIMRDE 231
M G A+ ++I RDE
Sbjct: 235 EIMEGNAKIMKFIARDE 251
>gi|70606887|ref|YP_255757.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
acidocaldarius DSM 639]
gi|68567535|gb|AAY80464.1| hypothetical protein Saci_1112 [Sulfolobus acidocaldarius DSM 639]
Length = 308
Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats.
Identities = 57/289 (19%), Positives = 105/289 (36%), Gaps = 19/289 (6%)
Query: 22 KRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLM 81
K + D L P+K Y W P+ + + D A W + L D ++ +
Sbjct: 14 KSIKKGGIDW-SLFPMK------LYQLGKKLFWDPSTIDLTQDRADW---DKLRDIDKFL 63
Query: 82 IKRNLGFFASSESLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
+ F + E VA + ++ E YL + FEEA H F+ + ++G
Sbjct: 64 MVNVTSKFGAGEEAVALDLHPLIVTLVKEGRVEEVMYLEQFIFEEAKHVEAFRRFLDAVG 123
Query: 140 LDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGM 199
+ E + N+A + + L + + + ++ + +V EG+
Sbjct: 124 VKE------DLVELTKDVSPNYAKIFYEELPKAMWNLNRDPSPENQVRAAVTYNLVVEGV 177
Query: 200 WFYTGFAQILSLGR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
G+ + R N G+A+ YI DES H+ FG +I ++ E K
Sbjct: 178 AAEGGYNIFKYITRTFNIFPGLAKMVNYIATDESRHIAFGTYLIARLIKEGGESVYKAAM 237
Query: 259 QKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
+ + A + + + LN +Y + + N R I
Sbjct: 238 EHINYLGPYAVGIFSEPNVPQGVEIPLKLNPEVTVEYAKKLLNVRIQAI 286
>gi|113951998|gb|AAP86736.2| NrdB [Enterobacteria phage T6]
Length = 247
Score = 80.6 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/253 (16%), Positives = 88/253 (34%), Gaps = 34/253 (13%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + VN+ + M + ++ E + + W P EV +
Sbjct: 1 MSTVFN-TSPVNILTEPMFFGSGLGLARYDIQ--RHRVFEELIEKSLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A +Y + +
Sbjct: 115 ETIHSRSYTHIMRNLFADPSKVFDEILLDEAIMKRAESIGKYYDDVLLKTRAWENAKDMV 174
Query: 184 EFLQD------------------------LFVFYVVFEGMWFYTGFAQILSLGRAN-KMV 218
++ +D E + FY FA + + M
Sbjct: 175 KYYKDQGLILADKDVEQRAKRDLMKSLYLCLHVINALEAIRFYVSFACTFNFHKNMEIME 234
Query: 219 GIAEQYQYIMRDE 231
G A+ ++I RDE
Sbjct: 235 GNAKIMKFIARDE 247
>gi|168702485|ref|ZP_02734762.1| ribonucleotide-diphosphate reductase small chain [Gemmata
obscuriglobus UQM 2246]
Length = 70
Score = 80.6 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEY 343
GL+ Y ++ A+RR +G+ P+F T+NPF +M + D+++ NFFE RV+ Y
Sbjct: 1 MAGLSCRDLRSYPEYAADRRLESLGIAPVFG-TKNPFGFMD-LQDVQELTNFFERRVSAY 58
Query: 344 QQGAEL 349
Q G
Sbjct: 59 QLGVTG 64
>gi|157310978|ref|YP_001468974.1| putative ribonucleotide reductase [Corynebacterium phage P1201]
gi|95832126|gb|ABF57526.1| putative ribonucleotide reductase [Corynebacterium phage P1201]
Length = 237
Score = 80.6 bits (197), Expect = 4e-13, Method: Composition-based stats.
Identities = 43/241 (17%), Positives = 87/241 (36%), Gaps = 26/241 (10%)
Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSF 174
+ + F E VH+ ++ + ++L E F + K L + + +
Sbjct: 1 MKQIGFMEEVHAKSYSSVFSTLFGSEDIDGAFAWVENNKATQVKK---LVFDEAYDISDY 57
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
+ ++ V+ E FYTGF L K+ A+ + IMRDE +H
Sbjct: 58 NDRRVEYYGAIIR---ASSVLLESFLFYTGFYLPLHFASQGKLTNTADLIRLIMRDEGVH 114
Query: 235 LNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
+ ++ +++ + + EI E +GL+A +
Sbjct: 115 GYYLGYKFQKVMEGALPYERDAVKERVTNLACRLFVNEIPLIEEIYE--PLGLSAQ-VQT 171
Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEV---------IDLKKEKNFFETRVTEYQQ 345
++++ N+ +GLE +F M+ V +D ++ +FF + Y
Sbjct: 172 FLRYNLNKAMQNLGLENVFPAE------MTRVEPRILSQLSVDSEETHDFFSGSGSSYVI 225
Query: 346 G 346
G
Sbjct: 226 G 226
>gi|209523562|ref|ZP_03272116.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima
CS-328]
gi|209495967|gb|EDZ96268.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima
CS-328]
Length = 112
Score = 79.8 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
Q + M A E + + + +G+ S EQY +++AN R IGLE L+
Sbjct: 4 FPHSQDRIYEMFDAAVQHECRWTNHIVGNNILGITEHSTEQYTKYLANIRLRSIGLESLY 63
Query: 314 ---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
KY ++P+ + D KK + NFFE VT Y + + WD
Sbjct: 64 SDPKYQKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVSGWD 110
>gi|291570484|dbj|BAI92756.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira
platensis NIES-39]
Length = 123
Score = 79.8 bits (195), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
Q + M A E + + + +G+ S EQY +++AN R IGLE L+
Sbjct: 15 FPHSQDRIYEMFDAAVQHECRWTNHIVGNNILGITEHSTEQYTKYLANIRLRSIGLESLY 74
Query: 314 ---KYTENPFPWMSEVIDLKK----EKNFFETRVTEYQQGAELK-WD 352
KY ++P+ + D KK + NFFE VT Y + + WD
Sbjct: 75 SDPKYQKSPYTHLERFSDTKKEAHTKANFFEASVTSYVMSSGVSGWD 121
>gi|327197767|ref|YP_004301465.1| gp132 [Brochothrix phage A9]
gi|299810367|gb|ADJ53166.1| gp132 [Brochothrix phage A9]
Length = 203
Score = 79.4 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 41/192 (21%), Positives = 78/192 (40%), Gaps = 21/192 (10%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA-I 104
+ + W T VP+ +DL W++ L + + + G ++L + + +L+ +
Sbjct: 30 WEKLNSQFWTATRVPVSNDLDDWRT---LDPVAKDLYGKVFGGLTLLDTLQSQDGMLSLL 86
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWA 162
+P R L F EA+H+ ++ I ++L + +F+ + KA+
Sbjct: 87 NNETQSPHMRAVLSNMLFMEAIHAQSYSTIFSTLMTPQEIANVFDFTHTNEHLQKKAHLI 146
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+ Q + P + V E FY+GF L KM +AE
Sbjct: 147 NEVYQNGTVPQK---------------MIASVFLESGLFYSGFYTPLYYLGNGKMANVAE 191
Query: 223 QYQYIMRDESLH 234
+ I+RDES++
Sbjct: 192 VIRLILRDESVN 203
>gi|15899238|ref|NP_343843.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
solfataricus P2]
gi|227829337|ref|YP_002831116.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
islandicus L.S.2.15]
gi|229578110|ref|YP_002836508.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
islandicus Y.G.57.14]
gi|229583322|ref|YP_002841721.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
islandicus Y.N.15.51]
gi|284996696|ref|YP_003418463.1| ribonucleotide reductase [Sulfolobus islandicus L.D.8.5]
gi|13815800|gb|AAK42633.1| Ribonuleotide reductase small subunit, probable (nrdB) [Sulfolobus
solfataricus P2]
gi|227455784|gb|ACP34471.1| ribonucleotide reductase [Sulfolobus islandicus L.S.2.15]
gi|228008824|gb|ACP44586.1| ribonucleotide reductase [Sulfolobus islandicus Y.G.57.14]
gi|228014038|gb|ACP49799.1| ribonucleotide reductase [Sulfolobus islandicus Y.N.15.51]
gi|284444591|gb|ADB86093.1| ribonucleotide reductase [Sulfolobus islandicus L.D.8.5]
Length = 308
Score = 79.4 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 52/278 (18%), Positives = 96/278 (34%), Gaps = 18/278 (6%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+K Y W P + + D WK L D E++ I FA+ E
Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWK---KLNDLEKMFIINVGSKFAAGE 75
Query: 94 SLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
VA + ++ E YL + +EE+ H F+ ++ E + Y +
Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFD--IVNVMEDLSAYTK 133
Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
S N+ + + L + + + ++ + + ++ EG+ G+ +
Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQI 189
Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
+ G+A+ I DES H+ FGI +I ++ E K + A
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKAAMDHINYLAPYAIG 249
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ + L Y + + N R I
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287
>gi|227826697|ref|YP_002828476.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
islandicus M.14.25]
gi|229583861|ref|YP_002842362.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
islandicus M.16.27]
gi|227458492|gb|ACP37178.1| ribonucleotide reductase [Sulfolobus islandicus M.14.25]
gi|228018910|gb|ACP54317.1| ribonucleotide reductase [Sulfolobus islandicus M.16.27]
Length = 308
Score = 79.4 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 50/278 (17%), Positives = 94/278 (33%), Gaps = 18/278 (6%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+K Y W P + + D WK L D E++ I FA+ E
Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWK---KLNDLEKMFIINVGSKFAAGE 75
Query: 94 SLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
VA + ++ E YL + +EE+ H F+ ++ + E
Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFDAVNVME------DLS 129
Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
+ N+ + + L + + + ++ + + ++ EG+ G+ +
Sbjct: 130 TYTKDLSPNYKKIFYEELPKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQI 189
Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
+ G+A+ I DES H+ FGI +I ++ E K + A
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKAAMDHINYLAPYAIG 249
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ + L Y + + N R I
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287
>gi|113951972|gb|AAP86728.2| NrdB [Enterobacteria phage RB14]
Length = 251
Score = 79.1 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 39/257 (15%), Positives = 91/257 (35%), Gaps = 9/257 (3%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V + M + ++ E + + W P EV +
Sbjct: 1 MSTVFN-TNPVDVLKEPMFFGSGLGIARYDIQ--RHRVFEELTEKSLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQNIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A +Y + + AD
Sbjct: 115 ETIHSRSYTHIMRNLYTDPSKVFDEIVLDEAIMKRAESIGRYYDDVLIKTRYWENAKADI 174
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
E+ +++ V E + + + + + + + I S F
Sbjct: 175 EYQKEINADEDVIEDAIEHETYWKRELMKSLYLCLHVINALEAIRFYVSFACTFNFHKNM 234
Query: 244 QIKIENPHLWTKEFQQK 260
+I N + + +
Sbjct: 235 EIMEGNAKIMKFIARDE 251
>gi|323476430|gb|ADX81668.1| ribonucleotide reductase [Sulfolobus islandicus HVE10/4]
Length = 308
Score = 79.1 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 52/278 (18%), Positives = 96/278 (34%), Gaps = 18/278 (6%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+K Y W P + + D WK L D E++ I FA+ E
Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWK---KLNDLEKMFIINVGSKFAAGE 75
Query: 94 SLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
VA + ++ E YL + +EE+ H F+ ++ E + Y +
Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFD--IVNVMEDLSAYTK 133
Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
S N+ + + L + + + ++ + + ++ EG+ G+ +
Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPKNQVRAVVTYNLIVEGVAAEGGYNIFRQI 189
Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
+ G+A+ I DES H+ FGI +I ++ E K + A
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKTAMDHINYLAPYAIG 249
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ + L Y + + N R I
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287
>gi|254823272|ref|ZP_05228273.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
intracellulare ATCC 13950]
Length = 313
Score = 79.1 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 50/264 (18%), Positives = 96/264 (36%), Gaps = 20/264 (7%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D W+ LT+DER R F + E V +A R
Sbjct: 27 GNAKFWNPADIDFSRDREDWE---RLTEDERSYATRLCAEFIAGEESVTQDIQPFMAAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H F+ + ++G+ E + + + +
Sbjct: 84 AEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGITEDLHY-------FLDDVPTYRTIFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
+ L + + ++ + + EGM TG+ + + G+ E +
Sbjct: 137 EELPACLNALTLDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY-AHETMPKGF 284
I DE H+ +G + + W + + M L+E + ++ MP G
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFALYDPMPFGL 256
Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
S +++MQ+ +++ + G
Sbjct: 257 ------SVDEFMQYASDKGMRRFG 274
>gi|227902816|ref|ZP_04020621.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
acidophilus ATCC 4796]
gi|227869479|gb|EEJ76900.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
acidophilus ATCC 4796]
Length = 326
Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/298 (16%), Positives = 90/298 (30%), Gaps = 29/298 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N + AW + W P VP+++D + L R +
Sbjct: 7 EAINWNDMEDKVDKSAWA---RLNDIIWEPRHVPVKEDKKEF---LQLPSPVRCTLLHVF 60
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
+ S L + + I PE L + E++ + ++ Y++ L E
Sbjct: 61 SALSFSSGLQMKSGIEQIKVDAITPEEAAVLNALQYLESIANKSYSYVLRELATPEEVDN 120
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
F+ P + K + + Q + G V+ E +++G
Sbjct: 121 AFDWANNSPYLQKKIHILNKIYQRGDALQKKAG---------------NVILETALYHSG 165
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L L KMV AE + +R S + + ++ + +
Sbjct: 166 FFAPLYLFGQGKMVRTAEIIKLALRGTSFSGIYPGYKFRLGYKKLGKTEQEDLKHWIDNL 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
E E + G + YM + N+ +G + T NP
Sbjct: 226 YDELVKNEEKHIRLLYKG--TGWTEDALH-YMYYSVNKAYLNLGFPGKYPDTSDTINP 280
>gi|323473782|gb|ADX84388.1| ribonucleotide reductase [Sulfolobus islandicus REY15A]
Length = 308
Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/278 (18%), Positives = 96/278 (34%), Gaps = 18/278 (6%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+K Y W P + + D WK L D E++ I FA+ E
Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWK---KLNDLEKMFIINVGSKFAAGE 75
Query: 94 SLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
VA + ++ E YL + +EE+ H F+ ++ E + Y +
Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFD--IVNVMEDLSAYTK 133
Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
S N+ + + L + + + ++ + + ++ EG+ G+ +
Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQI 189
Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
+ G+A+ I DES H+ FGI +I ++ E K + A
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKTAMDHINYLAPYAIG 249
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ + L Y + + N R I
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287
>gi|169631086|ref|YP_001704735.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
abscessus ATCC 19977]
gi|238055304|sp|B1MHK0|RIR2H_MYCA9 RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|169243053|emb|CAM64081.1| Ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
abscessus]
Length = 313
Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/263 (18%), Positives = 88/263 (33%), Gaps = 17/263 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P + D A W+S LT+ ER R F + E V ++ R
Sbjct: 27 GNAKFWDPAGIDFSRDRADWES---LTERERDYATRLCAQFIAGEESVTQDIQPFMSAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ E + + +
Sbjct: 84 AEGRLGDEMYLTQFAFEEAKHTQVFRLWLDAVGVSED-------LHGYLDDLPAYREIFF 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
L + ++ + V EGM TG+ + + G+ E
Sbjct: 137 DRLPDALGMLAADPSPAAQVRASVTYNHVVEGMLALTGYFAWHKICVDRGILPGMQELVH 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I DE H+ +G + + F+ + ++ A L
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDA-NWSVFEARMNELIPIALRLTEEGFELYGDDTPF 255
Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
GL+ ++MQ+ A++ + G
Sbjct: 256 GLSLD---EFMQYSADKGMRRFG 275
>gi|294994707|ref|ZP_06800398.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 210]
Length = 317
Score = 79.1 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+ L+DDER R F + E V ++ R
Sbjct: 27 GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ E + + +
Sbjct: 84 AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
L + ++ + + EGM TG+ + + G+ E +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I DE H+ +G + + WT F+ + ++ A L +
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255
Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
L+ ++Q+ ++ + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275
>gi|58338007|ref|YP_194592.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
acidophilus NCFM]
gi|58255324|gb|AAV43561.1| ribonucleotide reductase [Lactobacillus acidophilus NCFM]
Length = 311
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/298 (16%), Positives = 90/298 (30%), Gaps = 29/298 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N + AW + W P VP+++D + L R +
Sbjct: 7 EAINWNDMEDKVDKSAWA---RLNDIIWEPRHVPVKEDKKEF---LQLPSPVRCTLLHVF 60
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
+ S L + + I PE L + E++ + ++ Y++ L E
Sbjct: 61 SALSFSSGLQMKSGIEQIKVDAITPEEAAVLNALQYLESIANKSYSYVLRELATPEEVDN 120
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
F+ P + K + + Q + G V+ E +++G
Sbjct: 121 AFDWANNSPYLQKKIHILNKIYQRGDALQKKAG---------------NVILETALYHSG 165
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L L KMV AE + +R S + + ++ + +
Sbjct: 166 FFAPLYLFGQGKMVRTAEIIKLALRGTSFSGIYPGYKFRLGYKKLGKTEQEDLKHWIDNL 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NP 319
E E + G + YM + N+ +G + T NP
Sbjct: 226 YDELVKNEEKHIRLLYKG--TGWTEDALH-YMYYSVNKAYLNLGFPGKYPDTSDTINP 280
>gi|153820502|ref|ZP_01973169.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
cholerae NCTC 8457]
gi|126508955|gb|EAZ71549.1| ribonucleoside-diphosphate reductase 1 subunit beta [Vibrio
cholerae NCTC 8457]
Length = 155
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 4/146 (2%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M + +V + KY + + W P EV + D +
Sbjct: 8 QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
L D E+ + NL + +S+ + +A+ +S PE ++ +F E +HS ++
Sbjct: 65 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELETWIETWSFSETIHSRSYT 124
Query: 133 YIITSLGLDEGELFNMYREVPSITAK 158
+II ++ D +F+ E I +
Sbjct: 125 HIIRNIVNDPAVVFDDIVENEHIIKR 150
>gi|294887656|ref|XP_002772196.1| ribonucleoside-diphosphate reductase small chain, putative
[Perkinsus marinus ATCC 50983]
gi|239876179|gb|EER04012.1| ribonucleoside-diphosphate reductase small chain, putative
[Perkinsus marinus ATCC 50983]
Length = 82
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
Y + W E+ + DL W++ LT +E+ IK L FFA+S+ +V N+
Sbjct: 1 YKQHEASFWTAEEIDLGQDLRDWET---LTKNEQHFIKNVLAFFAASDGIVMENLASKFS 57
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHT 130
+ PE R + Q E +HS T
Sbjct: 58 CEVQIPEARAFYGFQTGMETIHSET 82
>gi|306806029|ref|ZP_07442697.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu007]
gi|306970425|ref|ZP_07483086.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu009]
gi|308347482|gb|EFP36333.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu007]
gi|308352109|gb|EFP40960.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu009]
Length = 323
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+ L+DDER R F + E V ++ R
Sbjct: 27 GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ E + + +
Sbjct: 84 AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
L + ++ + + EGM TG+ + + G+ E +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I DE H+ +G + + WT F+ + ++ A L +
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255
Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
L+ ++Q+ ++ + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275
>gi|66394974|ref|YP_240948.1| ORF025 [Staphylococcus phage G1]
gi|62636996|gb|AAX92107.1| ORF025 [Staphylococcus phage G1]
Length = 265
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/251 (18%), Positives = 87/251 (34%), Gaps = 19/251 (7%)
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF---NMYREVPSITAKANWAL 163
H P+ + E +H+ ++ +I T+L ++ + E + KA +
Sbjct: 7 HEPRPKYQAVFAFMGGMEEIHAKSYSHIFTTLLSNKETSYLLDTWVEENDFLKVKAQFIG 66
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
Y L P+ T + V E FY+GF L L +M
Sbjct: 67 YYYDQLLKPNPTIFDR-------YMAKVASAFLESALFYSGFYYPLLLAGRGQMTQSGAI 119
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
I +DE+ H + K+ +++ +L E+AY H
Sbjct: 120 IYKITQDEAYHGSAVGLTAQYDYNLLTEEEKKQADKETYELLDILYTNEVAYTHSLYDPL 179
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLK--KEKNFFETRV 340
+ + Y+Q+ NR +G E F NP + ++ + +FF +
Sbjct: 180 EL---SEDVINYVQYNFNRALQNLGREDYFNPEPYNPI--VENQTNVDRLRNVDFFSGKA 234
Query: 341 TEYQQGAELKW 351
+Y++ +K
Sbjct: 235 -DYEKSTNIKD 244
>gi|254233615|ref|ZP_04926941.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
[Mycobacterium tuberculosis C]
gi|124603408|gb|EAY61683.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
[Mycobacterium tuberculosis C]
Length = 321
Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+ L+DDER R F + E V ++ R
Sbjct: 27 GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ E + + +
Sbjct: 84 AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
L + ++ + + EGM TG+ + + G+ E +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I DE H+ +G + + WT F+ + ++ A L +
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255
Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
L+ ++Q+ ++ + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275
>gi|284033796|ref|YP_003383727.1| ribonucleotide reductase [Kribbella flavida DSM 17836]
gi|283813089|gb|ADB34928.1| ribonucleotide reductase [Kribbella flavida DSM 17836]
Length = 319
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/269 (15%), Positives = 81/269 (30%), Gaps = 21/269 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
+ W P ++ D W+ LT +E+ F + E V L
Sbjct: 30 LFDKGNRKFWNPRDLDFSQDAEDWQ---RLTPNEKDNAMMLCAQFIAGEEAVTEDLQPFL 86
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
YL + FEEA H+ F+ + ++G+ E + +
Sbjct: 87 QAMAAEGRFGDEMYLTQFCFEEAKHTAVFRLWLDAVGVTED-------LHRYVENNPGYR 139
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIA 221
+ + L + + ++ + V EG TG+ L + G+
Sbjct: 140 AIFYEALPVALKSLADDPSPANQVRASVTYNHVVEGTLALTGYHAWNLLCTGRRILPGMQ 199
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E ++I DE H+ +G + + W + + + + M
Sbjct: 200 ELIRHIGDDERRHMAWGTFTCRRHVAADAANW-----KVVTDTMEDLLPHALVQIQWAME 254
Query: 282 KGFVG---LNAPSCEQYMQFIANRRCHQI 307
++ + Y A RR I
Sbjct: 255 NSPELPPEIDPTALMTYAGDRATRRLGAI 283
>gi|15839613|ref|NP_334650.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis CDC1551]
gi|31791410|ref|NP_853903.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
bovis AF2122/97]
gi|121636145|ref|YP_976368.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|148821426|ref|YP_001286180.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis F11]
gi|215406230|ref|ZP_03418411.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 02_1987]
gi|215414101|ref|ZP_03422758.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 94_M4241A]
gi|215425440|ref|ZP_03423359.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T92]
gi|215433154|ref|ZP_03431073.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis EAS054]
gi|215448517|ref|ZP_03435269.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T85]
gi|218755972|ref|ZP_03534768.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis GM 1503]
gi|224988618|ref|YP_002643305.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
bovis BCG str. Tokyo 172]
gi|253797156|ref|YP_003030157.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis KZN 1435]
gi|260199231|ref|ZP_05766722.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T46]
gi|260203377|ref|ZP_05770868.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis K85]
gi|289441609|ref|ZP_06431353.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis T46]
gi|289552485|ref|ZP_06441695.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis KZN 605]
gi|289572811|ref|ZP_06453038.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis K85]
gi|289748002|ref|ZP_06507380.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 02_1987]
gi|289748709|ref|ZP_06508087.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis T92]
gi|289756298|ref|ZP_06515676.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis EAS054]
gi|289760339|ref|ZP_06519717.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T85]
gi|289764349|ref|ZP_06523727.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
[Mycobacterium tuberculosis GM 1503]
gi|297632713|ref|ZP_06950493.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis KZN 4207]
gi|297729687|ref|ZP_06958805.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis KZN R506]
gi|298527626|ref|ZP_07015035.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
[Mycobacterium tuberculosis 94_M4241A]
gi|306779065|ref|ZP_07417402.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu002]
gi|306782854|ref|ZP_07421176.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu003]
gi|306787222|ref|ZP_07425544.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu004]
gi|306791778|ref|ZP_07430080.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu005]
gi|306801818|ref|ZP_07438486.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu008]
gi|313657013|ref|ZP_07813893.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis KZN V2475]
gi|81422934|sp|Q7U2I1|RIR2H_MYCBO RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|238055305|sp|A1KF53|RIR2H_MYCBP RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|13879730|gb|AAK44464.1| ribonucleoside-diphosphate reductase, beta subunit, putative
[Mycobacterium tuberculosis CDC1551]
gi|31616995|emb|CAD93102.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB
(RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium
bovis AF2122/97]
gi|121491792|emb|CAL70254.1| Probable ribonucleoside-diphosphate reductase (beta chain) nrdB
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|148719953|gb|ABR04578.1| ribonucleoside-diphosphate reductase beta subunit nrdB
[Mycobacterium tuberculosis F11]
gi|224771731|dbj|BAH24537.1| ribonucleoside-diphosphate reductase subunit beta [Mycobacterium
bovis BCG str. Tokyo 172]
gi|253318659|gb|ACT23262.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis KZN 1435]
gi|289414528|gb|EFD11768.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis T46]
gi|289437117|gb|EFD19610.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis KZN 605]
gi|289537242|gb|EFD41820.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis K85]
gi|289688530|gb|EFD56018.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis 02_1987]
gi|289689296|gb|EFD56725.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis T92]
gi|289696885|gb|EFD64314.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis EAS054]
gi|289711855|gb|EFD75871.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
[Mycobacterium tuberculosis GM 1503]
gi|289715903|gb|EFD79915.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T85]
gi|298497420|gb|EFI32714.1| ribonucleoside-diphosphate reductase (beta chain) nrdB
[Mycobacterium tuberculosis 94_M4241A]
gi|308327916|gb|EFP16767.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu002]
gi|308332374|gb|EFP21225.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu003]
gi|308336125|gb|EFP24976.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu004]
gi|308339757|gb|EFP28608.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu005]
gi|308351381|gb|EFP40232.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu008]
gi|323717223|gb|EGB26432.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis CDC1551A]
gi|326905988|gb|EGE52921.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis W-148]
gi|328456943|gb|AEB02366.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis KZN 4207]
Length = 314
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+ L+DDER R F + E V ++ R
Sbjct: 27 GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ E + + +
Sbjct: 84 AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
L + ++ + + EGM TG+ + + G+ E +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I DE H+ +G + + WT F+ + ++ A L +
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255
Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
L+ ++Q+ ++ + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275
>gi|268320098|ref|YP_003293754.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus
johnsonii FI9785]
gi|262398473|emb|CAX67487.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus
johnsonii FI9785]
Length = 313
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/275 (12%), Positives = 89/275 (32%), Gaps = 22/275 (8%)
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
K L +E+ +I + G S +L + I + N E + E+
Sbjct: 41 KDQKEFLHLPKNEQTVILHSFGSLTLSSTLQMKVALSEIKKDAENSEEVAVYNALQYLES 100
Query: 126 VHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
+++ + Y++ + + + + P + K + Q+ ++
Sbjct: 101 INNKAYSYVLAEFSDSKKQEDAYEWANQNPYLQKKMKFLNTVYQSGNAIQKK-------- 152
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ G++ + F + G+ K+ AE +Y +R +L+ +
Sbjct: 153 ------AAHVFLSTGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITTLNGIYTGIKFR 205
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ + + + E+++ + E Y+ + N+
Sbjct: 206 RDFFKLSKKEQNKVHDWVYDLCDNLYDNELSHIKLLYQNTDL---EDKVEHYIHYTLNKA 262
Query: 304 CHQIGLEPLFKYTENPFPWM--SEVIDLKKEKNFF 336
+G EP + + + +++ K+FF
Sbjct: 263 LMNLGQEPKYPENVETLDPILTTGLMESAMIKDFF 297
>gi|306795820|ref|ZP_07434122.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu006]
gi|308343762|gb|EFP32613.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu006]
Length = 314
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+ L+DDER R F + E V ++ R
Sbjct: 27 GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ E + + +
Sbjct: 84 AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
L + ++ + + EGM TG+ + + G+ E +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I DE H+ +G + + WT F+ + ++ A L +
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255
Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
L+ ++Q+ ++ + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275
>gi|260185097|ref|ZP_05762571.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis CPHL_A]
gi|289445765|ref|ZP_06435509.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis CPHL_A]
gi|289418723|gb|EFD15924.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis CPHL_A]
Length = 314
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+ L+DDER R F + E V ++ R
Sbjct: 27 GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ E + + +
Sbjct: 84 AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
L + ++ + + EGM TG+ + + G+ E +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I DE H+ +G + + WT F+ + ++ A L +
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255
Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
L+ ++Q+ ++ + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275
>gi|238618784|ref|YP_002913609.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
islandicus M.16.4]
gi|238379853|gb|ACR40941.1| ribonucleotide reductase [Sulfolobus islandicus M.16.4]
Length = 308
Score = 78.3 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/278 (18%), Positives = 96/278 (34%), Gaps = 18/278 (6%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+K Y W P + + D WK L D E++ I FA+ E
Sbjct: 25 LFPMK------LYQLGKKLFWDPANIDLSKDAEDWK---KLNDLEKMFIINVGSKFAAGE 75
Query: 94 SLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
VA + ++ E YL + +EE+ H F+ ++ + E + Y +
Sbjct: 76 EAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFDAVNV--MEDLSAYTK 133
Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
S N+ + + L + + + + + + ++ EG+ G+ +
Sbjct: 134 DLSP----NYKKIFYEELPKAMWNLSRDPSPENQVGAVVTYNLIVEGVAAEGGYNIFRQI 189
Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
+ G+A+ I DES H+ FGI +I ++ E K + A
Sbjct: 190 TNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKAAMDHINYLAPYAIG 249
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ + L Y + + N R I
Sbjct: 250 IFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAIN 287
>gi|226438223|pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS
Length = 323
Score = 77.9 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+ L+DDER R F + E V ++ R
Sbjct: 36 GNAKFWHPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 92
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ E + + +
Sbjct: 93 AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 145
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
L + ++ + + EGM TG+ + + G+ E +
Sbjct: 146 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 205
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I DE H+ +G + + WT F+ + ++ A L +
Sbjct: 206 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 264
Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
L+ ++Q+ ++ + G
Sbjct: 265 DLSKDD---FLQYSTDKGMRRFG 284
>gi|254549173|ref|ZP_05139620.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
Length = 311
Score = 77.9 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+ L+DDER R F + E V ++ R
Sbjct: 27 GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ E + + +
Sbjct: 84 AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
L + ++ + + EGM TG+ + + G+ E +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I DE H+ +G + + WT F+ + ++ A L +
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255
Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
L+ ++Q+ ++ + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275
>gi|15607374|ref|NP_214747.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis H37Rv]
gi|148659997|ref|YP_001281520.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis H37Ra]
gi|167968770|ref|ZP_02551047.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis H37Ra]
gi|306774323|ref|ZP_07412660.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu001]
gi|306974656|ref|ZP_07487317.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu010]
gi|307082365|ref|ZP_07491535.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu011]
gi|307082709|ref|ZP_07491822.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu012]
gi|81556745|sp|P96416|RIR2H_MYCTU RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|238055310|sp|A5TYV8|RIR2H_MYCTA RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|1871607|emb|CAB07000.1| PROBABLE RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE (BETA CHAIN) NRDB
(RIBONUCLEOTIDE REDUCTASE SMALL CHAIN) [Mycobacterium
tuberculosis H37Rv]
gi|148504149|gb|ABQ71958.1| ribonucleoside-diphosphate reductase subunit beta NrdB
[Mycobacterium tuberculosis H37Ra]
gi|308217156|gb|EFO76555.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu001]
gi|308356059|gb|EFP44910.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu010]
gi|308360014|gb|EFP48865.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu011]
gi|308367580|gb|EFP56431.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis SUMu012]
Length = 314
Score = 77.9 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 17/263 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+ L+DDER R F + E V ++ R
Sbjct: 27 GNAKFWHPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ E + + +
Sbjct: 84 AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
L + ++ + + EGM TG+ + + G+ E +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I DE H+ +G + + WT F+ + ++ A L +
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FETRMNELIPLALRLIEEGFALYGDQPPF 255
Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
L+ ++Q+ ++ + G
Sbjct: 256 DLSKDD---FLQYSTDKGMRRFG 275
>gi|300362937|ref|ZP_07059107.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
gasseri JV-V03]
gi|300352987|gb|EFJ68865.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
gasseri JV-V03]
Length = 314
Score = 77.9 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/269 (15%), Positives = 87/269 (32%), Gaps = 24/269 (8%)
Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
P VP+ D + + L E+ M+ + G A S +L + I + N E
Sbjct: 34 PRRVPIHKDRDEF---SHLPKAEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 90
Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSP 172
+ E++++ + + ++ + E FN + P + K
Sbjct: 91 VYNALQYLESINNKAYGHALSEFSTSDEQRDEAFNWANQNPYLQKKM------------- 137
Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
T + +Q + G++ + F + G+ K+ AE +Y +R +
Sbjct: 138 -RLLNTVYQSENAIQKKAAHVFLSTGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITT 195
Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
L+ + + + + + E+ + H GL
Sbjct: 196 LNGIYTGIKFRRDYFKLSKEEQENVHNWVYGLCDRLYANELNHIHLLYED--TGL-EDKV 252
Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP 321
E Y+ + N+ +G EP +
Sbjct: 253 EHYIHYTLNKALMNLGQEPKYPENVETLD 281
>gi|323167149|gb|EFZ52867.1| ribonucleoside-diphosphate reductase 2 subunit beta domain protein
[Shigella sonnei 53G]
Length = 150
Score = 77.9 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 6/145 (4%)
Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
+ K+ A+ + I+RDE++H + + + +E + + +L E
Sbjct: 1 MYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLEL 60
Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSE 325
E+ Y E + A + ++ + AN+ +G EPLF NP +
Sbjct: 61 YDNELQYTDELYAETPW---ADDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAAL 117
Query: 326 VIDLKKEKNFFETRVTEYQQGAELK 350
+ + +FF + Y G ++
Sbjct: 118 SPNADENHDFFSGSGSSYVMGKAVE 142
>gi|118465897|ref|YP_884058.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
avium 104]
gi|254777375|ref|ZP_05218891.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
avium subsp. avium ATCC 25291]
gi|238055303|sp|A0QMC0|RIR2H_MYCA1 RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|118167184|gb|ABK68081.1| ribonucleotide-diphosphate reductase beta subunit [Mycobacterium
avium 104]
Length = 311
Score = 77.9 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/264 (18%), Positives = 94/264 (35%), Gaps = 20/264 (7%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+ LTDDER R F + E V +A R
Sbjct: 27 GNAKFWNPADIDFSRDRADWE---RLTDDERSYATRLCAEFIAGEESVTQDIQPFMAAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H F+ + ++G+ + + ++ +
Sbjct: 84 AEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTDD-------LHHFLDDVPSYRTIFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
+ L + ++ + + EGM TG+ + + G+ E +
Sbjct: 137 EELPDCLNALTIDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY-AHETMPKGF 284
I DE H+ +G + + W + + M L+E + ++ MP
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFALYDPMPFDL 256
Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
S +++M + +++ + G
Sbjct: 257 ------SVDEFMAYASDKGMRRFG 274
>gi|41409770|ref|NP_962606.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
avium subsp. paratuberculosis K-10]
gi|81413257|sp|Q73TP6|RIR2H_MYCPA RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|41398602|gb|AAS06222.1| NrdB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 311
Score = 77.5 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 49/264 (18%), Positives = 94/264 (35%), Gaps = 20/264 (7%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+ LTDDER R F + E V +A R
Sbjct: 27 GNAKFWNPADIDFSRDRADWE---RLTDDERSYATRLCAEFIAGEESVTQDIQPFMAAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H F+ + ++G+ + + ++ +
Sbjct: 84 AEGRLGDEMYLTQFAFEEAKHVQVFRMWLDAVGVTDD-------LHHFLDDVPSYRTIFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
+ L + ++ + + EGM TG+ + + G+ E +
Sbjct: 137 EELPDCLNALTIDPSPAAQVRASVTYNHMVEGMLALTGYFGWHKICVERGILPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY-AHETMPKGF 284
I DE H+ +G + + W + + M L+E + ++ MP
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWGVFETRMNELMPLGLRLIEEGFALYDPMPFDL 256
Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
S +++M + +++ + G
Sbjct: 257 ------SVDEFMAYASDKGMRRFG 274
>gi|145223648|ref|YP_001134326.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
gilvum PYR-GCK]
gi|315443974|ref|YP_004076853.1| ribonucleotide reductase subunit beta [Mycobacterium sp. Spyr1]
gi|238055306|sp|A4TB76|RIR2H_MYCGI RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|145216134|gb|ABP45538.1| putative ribonucleoside-diphosphate reductase (beta chain)
[Mycobacterium gilvum PYR-GCK]
gi|315262277|gb|ADT99018.1| ribonucleotide reductase, beta subunit [Mycobacterium sp. Spyr1]
Length = 312
Score = 77.5 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 53/263 (20%), Positives = 94/263 (35%), Gaps = 18/263 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+S L+ ER R F + E V +A R
Sbjct: 27 GNAKFWDPADIDFSRDRADWES---LSTMERDWATRLCAEFIAGEEAVTQDIQPFMAAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ E + + +
Sbjct: 84 AEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGITED-------LQGYLDDLPAYRQMFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
+ L + T + Q ++ + V EGM TG+ + + + G+ E +
Sbjct: 137 EELPASLDALATDPSPQAQVRASVTYNHVIEGMMALTGYYAWHRICVDRHILPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I DE H+ +G + + WT F+ + ++ A A +
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWTV-FEDRMNELIPLALQNTDD-AFALYDEIPF 254
Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
GL +QY A++ + G
Sbjct: 255 GLTIEEFQQY---AADKGMRRFG 274
>gi|291092706|gb|ADD74390.1| ribonucleotide reductase small subunit [uncultured virus]
Length = 181
Score = 77.1 bits (188), Expect = 4e-12, Method: Composition-based stats.
Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 22/200 (11%)
Query: 80 LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLG 139
K L FFA S+ +V N+V Y + E R + QA E +H+ + +I +L
Sbjct: 1 DFFKCILAFFAPSDGIVGENLVTRFYEMVVYTEARYFYAFQAAMENIHAEVYSQLIKTLI 60
Query: 140 LDEGE---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF 196
+E E +F+ + P IT K WA Q+ + + F++ L F VV
Sbjct: 61 PNEDEQRSIFSSFMTTPGITEKTRWAKQWLER------------ENLSFVERLVAFAVV- 107
Query: 197 EGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
EG+ F FA I L + M G+ + I RDE LH +F + + + K
Sbjct: 108 EGLLFSGSFASIFWLKKRGLMHGLTFSNELISRDEGLHCDFACLLYTKH------IVHKL 161
Query: 257 FQQKSRTMLHEATLLEIAYA 276
++ EA E +
Sbjct: 162 PNNVIYNIVREAVHAESIFF 181
>gi|284174067|ref|ZP_06388036.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
solfataricus 98/2]
gi|261600997|gb|ACX90600.1| ribonucleotide reductase [Sulfolobus solfataricus 98/2]
Length = 308
Score = 76.7 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 18/278 (6%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
L P+K Y W P + + D WK L D E++ I FA+ E
Sbjct: 25 LFPMK------LYQLGKRLFWDPANIDLSKDAEDWK---KLNDLEKMFIINVGSKFAAGE 75
Query: 94 SLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYRE 151
VA + ++ E YL + +EE+ H F+ ++ + E
Sbjct: 76 EAVALDLHPLIVTLVKEGKVEEVMYLEQFVYEESKHVEAFRRFFDAVNVIE------DLS 129
Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
+ N+ + + L + + + ++ + + +V EG+ G+ +
Sbjct: 130 AYTKDLSPNYRKIFYEELPKAMWNLSKDPSPENQVKAVVTYNLVVEGIAAEGGYNIFRRI 189
Query: 212 GR-ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATL 270
+ G+A+ I DES H+ FG+ +I ++ E+ K + A
Sbjct: 190 TNTRKILPGLAKMINLIATDESRHIAFGVYLIARLVKEHGEGIYKVAMDHINYLAPYAIG 249
Query: 271 LEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ + L Y + + N R I
Sbjct: 250 IFSEPTMPQVTNLPFDLTNMELVDYAKKLLNTRIDAIN 287
>gi|14970916|emb|CAC44510.1| putative ribonucleotide reductase small subunit [Sphaerechinus
granularis]
Length = 141
Score = 76.7 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 16/154 (10%)
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--- 140
L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 1 HVLAFFAASDGIVNENLVERFSQEVQIAEARCFYGFQIAIENIHSEMYSLLIDAYIKDAV 60
Query: 141 DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
LFN +P +T KA WAL + + S F T V + EG++
Sbjct: 61 QRDYLFNAVETMPCVTKKAQWALDWISS-DSADFGT------------RIVAFAAVEGIF 107
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
F FA I L + M G+ + I RDE LH
Sbjct: 108 FSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLH 141
>gi|42519734|ref|NP_965664.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
johnsonii NCC 533]
gi|41584023|gb|AAS09630.1| hypothetical protein LJ_0591 [Lactobacillus johnsonii NCC 533]
Length = 313
Score = 76.7 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/275 (13%), Positives = 89/275 (32%), Gaps = 22/275 (8%)
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
K L +E+ +I + G S +L + I + N E + E+
Sbjct: 41 KDQKEFLHLPKNEQTVILHSFGSLTLSSTLQMKVALSEIKKDAENSEEVAVYNALQYLES 100
Query: 126 VHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
+++ + Y++ + + + + P + K T
Sbjct: 101 INNKAYSYVLAEFSDSKKQEDAYEWANQNPYLQKKMK--------------LLNTVYQSG 146
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+Q + G++ + F + G+ K+ AE +Y +R +L+ +
Sbjct: 147 NTIQKKAAHVFLSTGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITTLNGIYTGIKFR 205
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ + P K+ + + E+ + + E Y+ + N+
Sbjct: 206 RDFFKLPKKEQKKVHDWVYDLCDKLYDNELRHIKLLYKHTDL---EDKVEHYIHYTLNKA 262
Query: 304 CHQIGLEPLFKYTENPFPWM--SEVIDLKKEKNFF 336
+G EP + + + +++ ++FF
Sbjct: 263 LMNLGQEPKYPENVETLDPILTTGLMESAMIEDFF 297
>gi|240168452|ref|ZP_04747111.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
kansasii ATCC 12478]
Length = 314
Score = 76.7 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 49/265 (18%), Positives = 91/265 (34%), Gaps = 21/265 (7%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ + W + LTD ER R F + E V +A R
Sbjct: 27 GNAKFWDPADIDFSREREDW---DRLTDTERDYAIRLCAQFVAGEEAVTEDIQPFMAAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + S+G+ + ++ +
Sbjct: 84 AEGRLADEMYLTQFAFEEAKHTQVFRMWLDSVGV-------TGDLHGYLDDLPSYRQMFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
L T + ++ + + EGM TG+ + + G+ +
Sbjct: 137 DELPECLSALTTDPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERGILPGMQRLVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLW--TKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+I DE H+ +G + N W +E + + + T A + MP
Sbjct: 197 HISDDERRHMAWGTFTCRRHVAANDANWTVFEERMNELIPLALQLTQDGFALYGDPMPFD 256
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIG 308
S E++M + +++ + G
Sbjct: 257 L------SVEEFMTYSSDKGMRRFG 275
>gi|329667981|gb|AEB93929.1| ribonucleoside-diphosphate reductase beta chain [Lactobacillus
johnsonii DPC 6026]
Length = 313
Score = 76.7 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/275 (13%), Positives = 89/275 (32%), Gaps = 22/275 (8%)
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
K L +E+ +I + G S +L + I + N E + E+
Sbjct: 41 KDQKEFLHLPKNEQTVILHSFGSLTLSSTLQMKVALSEIKKDAENSEEVAVYNALQYLES 100
Query: 126 VHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
+++ + Y++ + + + + P + K T
Sbjct: 101 INNKAYSYVLAEFSDSKKQEDAYEWANQNPYLQKKMK--------------LLNTVYQSG 146
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+Q + G++ + F + G+ K+ AE +Y +R +L+ +
Sbjct: 147 TTIQKKAAHVFLSTGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITTLNGIYTGIKFR 205
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ + P K+ + + E+ + + E Y+ + N+
Sbjct: 206 RDFFKLPKKEQKKVHDWVYDLCDKLYDNELRHIKLLYKHTDL---EDKIEHYIHYTLNKA 262
Query: 304 CHQIGLEPLFKYTENPFPWM--SEVIDLKKEKNFF 336
+G EP + + + +++ ++FF
Sbjct: 263 LMNLGQEPKYPENVETLDPILTTGLMESAMIEDFF 297
>gi|116630259|ref|YP_815456.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
gasseri ATCC 33323]
gi|116095841|gb|ABJ60993.1| ribonucleoside-diphosphate reductase class Ib beta subunit
[Lactobacillus gasseri ATCC 33323]
Length = 320
Score = 76.4 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 43/269 (15%), Positives = 86/269 (31%), Gaps = 24/269 (8%)
Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
P VP+ +D + + L E+ M+ + G A S +L + I + N E
Sbjct: 40 PRRVPIHEDRDEF---SHLPKTEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 96
Query: 116 YLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172
+ E++++ + + +T E FN + P + K
Sbjct: 97 VYNALQYLESINNKAYGHALTEFSTSNEQRDEAFNWANQNPYLQKKM------------- 143
Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
T +Q + G++ + F + G+ K+ AE +Y +R +
Sbjct: 144 -RLLNTVYQSDNAIQKKAAHVFISTGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITT 201
Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
L+ + + K + + E+ + H GL
Sbjct: 202 LNGIYTGIKFRRDFFNLSKEEQKNIHKWVYDLCDRLYANELNHIHLLYED--TGL-EDKV 258
Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP 321
E Y+ + N+ +G EP +
Sbjct: 259 EHYIHYTLNKALMNLGQEPKYPENVETLD 287
>gi|238853136|ref|ZP_04643525.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
gasseri 202-4]
gi|238834244|gb|EEQ26492.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
gasseri 202-4]
Length = 330
Score = 76.4 bits (186), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/269 (14%), Positives = 86/269 (31%), Gaps = 24/269 (8%)
Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
P VP+ D + + L E+ M+ + G A S +L + I + N E
Sbjct: 34 PRRVPIHKDRDEF---SHLPKAEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 90
Query: 116 YLLRQAFEEAVHSHTFQYIITSLGLDE---GELFNMYREVPSITAKANWALQYTQTLSSP 172
+ E++++ + + ++ + E FN + P + K Q+
Sbjct: 91 VYNALQYLESINNKAYGHALSEFSTSDEQRDEAFNWANQNPYLQKKMRLLNTVYQS---- 146
Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
+ + ++ G++ + F + G+ K+ AE +Y +R +
Sbjct: 147 ---------ENAIQKKAAHVFLS-TGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITT 195
Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
L+ + + + + + E+ + H
Sbjct: 196 LNGIYTGIKFRRDYFKLSKEEQENVHNWVYGLCDRLYANELNHIHLLYEDTGF---EDKV 252
Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP 321
E Y+ + N+ +G EP +
Sbjct: 253 EHYIHYTLNKALMNLGQEPKYPENVETLD 281
>gi|311110156|ref|ZP_07711553.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
gasseri MV-22]
gi|311065310|gb|EFQ45650.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
gasseri MV-22]
Length = 332
Score = 76.4 bits (186), Expect = 7e-12, Method: Composition-based stats.
Identities = 43/269 (15%), Positives = 86/269 (31%), Gaps = 24/269 (8%)
Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
P VP+ +D + + L E+ M+ + G A S +L + I + N E
Sbjct: 34 PRRVPIHEDRDEF---SHLPKTEQTMLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAA 90
Query: 116 YLLRQAFEEAVHSHTFQYIITSL---GLDEGELFNMYREVPSITAKANWALQYTQTLSSP 172
+ E++++ + + +T E FN + P + K
Sbjct: 91 VYNALQYLESINNKAYGHALTEFSTSNEQRDEAFNWANQNPYLQKKM------------- 137
Query: 173 SFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDES 232
T +Q + G++ + F + G+ K+ AE +Y +R +
Sbjct: 138 -RLLNTVYQSDNAIQKKAAHVFISTGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITT 195
Query: 233 LHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSC 292
L+ + + K + + E+ + H GL
Sbjct: 196 LNGIYTGIKFRRDFFNLSKEEQKNIHKWVYDLCDRLYANELNHIHLLYED--TGL-EDKV 252
Query: 293 EQYMQFIANRRCHQIGLEPLFKYTENPFP 321
E Y+ + N+ +G EP +
Sbjct: 253 EHYIHYTLNKALMNLGQEPKYPENVETLD 281
>gi|300790300|ref|YP_003770591.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
mediterranei U32]
gi|299799814|gb|ADJ50189.1| ribonucleoside-diphosphate reductase beta chain [Amycolatopsis
mediterranei U32]
Length = 322
Score = 76.0 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 43/266 (16%), Positives = 88/266 (33%), Gaps = 15/266 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
++ W P ++ + W + L +++ + F + E V +
Sbjct: 29 LFVKGNKKFWNPADIDFSREREGWDT---LNPEQQRSTTYLVAQFIAGEEAVTEDIQPFM 85
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
YL + FEEA H+ F+ + ++GL E P + ++
Sbjct: 86 RAMSATGRFGDEMYLTQFCFEEAKHTEVFRRWMDAVGLTED-------LHPFVAENPHYR 138
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIA 221
+ + L + ++ + V EG TG+ + + + + G+
Sbjct: 139 KLFYEELPQSLRALEDDPSPLNQIRASVTYNHVIEGSLALTGYYSWQLICTQHDILPGMQ 198
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E + I DE H+ +G + + LW Q+ + H + I + +
Sbjct: 199 ELVRRIGDDERRHMAWGTFTCRRHVAADDSLWDAVLQRMGELLPHALNM--IQWVQDQFE 256
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQI 307
+ + QY A RR I
Sbjct: 257 ELPFDNDPQEIVQYAADRAQRRLGAI 282
>gi|126437012|ref|YP_001072703.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
sp. JLS]
gi|238055308|sp|A3Q4Y5|RIR2H_MYCSJ RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|126236812|gb|ABO00213.1| putative ribonucleotide reductase small chain [Mycobacterium sp.
JLS]
Length = 312
Score = 76.0 bits (185), Expect = 9e-12, Method: Composition-based stats.
Identities = 48/264 (18%), Positives = 95/264 (35%), Gaps = 20/264 (7%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+S + L D R F + E V +A R
Sbjct: 27 GNAKFWDPADIDFSKDRADWESLSNLERDWA---TRLCAQFIAGEEAVTQDIQPFMAAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ + + ++ +
Sbjct: 84 AEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGMTDD-------LQCYLDDLPSYRQMFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
+ L + T + ++ + V EGM TG+ + + G+ E +
Sbjct: 137 EELPASLEALATDPSPAAQVRASATYNHVIEGMMALTGYYAWHRICVDRKVLPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
I DE H+ +G + ++ + E + L + + ++ +P GF
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWEVFENRMNELIPLALSNTDDSFALYDEIPFGF 256
Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
E++ Q+ A++ + G
Sbjct: 257 AK------EEFQQYAADKGMRRFG 274
>gi|226311199|ref|YP_002771093.1| hypothetical protein BBR47_16120 [Brevibacillus brevis NBRC 100599]
gi|226094147|dbj|BAH42589.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 297
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/256 (16%), Positives = 95/256 (37%), Gaps = 16/256 (6%)
Query: 43 WEKYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
++ Y A W P ++ D + + N + + + R GF E++ + +
Sbjct: 22 YQLYQKAKRYGIWNPQDIDFTQDREDYANMN--PEQKEETLGRIAGFLGGEEAVTLDLLP 79
Query: 102 LAI-YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
L + E +L FEEA H+ F+ ++ ++G
Sbjct: 80 LIMVIAEEGRLEEEMFLTTFLFEEAKHTEFFRLVLDNIGES---------GDLHHFHDDV 130
Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FAQILSLGRANKMVG 219
+ + + L + T + + + V+ + EG+ TG +A +L + M G
Sbjct: 131 YKRIFHEILPNALHRLLTDKSPEAIAEASTVYNMFVEGVLAETGYYAFYEALSKTGLMPG 190
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHET 279
+ + Y+ DES H+++G ++ ++ E+ H++ ++ + +
Sbjct: 191 LMQGIGYLKTDESRHISYGTFLLQRLICEHRHIYDVIAKKMDELA--PMATHLYDWMDDP 248
Query: 280 MPKGFVGLNAPSCEQY 295
G+ +Q+
Sbjct: 249 QGVSAFGVKITDLKQF 264
>gi|118470345|ref|YP_884771.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
smegmatis str. MC2 155]
gi|238055307|sp|A0QPD3|RIR2H_MYCS2 RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|118171632|gb|ABK72528.1| ribonucleoside-diphosphate reductase, beta subunit [Mycobacterium
smegmatis str. MC2 155]
Length = 320
Score = 75.6 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/263 (18%), Positives = 91/263 (34%), Gaps = 17/263 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+ LT+ ER R F + E V ++ R
Sbjct: 27 GNAKFWDPADIDFSRDRADWE---ALTEREREYATRLCAEFIAGEEAVTKDIQPFMSAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ + I + +
Sbjct: 84 AEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGVTDD-------LHSLIEEVPAYVQIFC 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
+ L + + + ++ V+ V EGM TG+ + + G+ E +
Sbjct: 137 EELPAALEALTSDPSPAAQVRASVVYNHVVEGMLALTGYYAWHRICVDRGILPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I DE H+ +G + + F+ ++ A L
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDA-NWAVFETHMNELIPVALRLTQEGFALYGDDIPF 255
Query: 286 GLNAPSCEQYMQFIANRRCHQIG 308
GL +++Q+ ++R + G
Sbjct: 256 GLEEG---EFLQYSSDRGMRRFG 275
>gi|295693640|ref|YP_003602250.1| ribonucleotide reductase [Lactobacillus crispatus ST1]
gi|295031746|emb|CBL51225.1| Ribonucleotide reductase [Lactobacillus crispatus ST1]
Length = 311
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/296 (16%), Positives = 91/296 (30%), Gaps = 29/296 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + AW + W P VP+++D + L + + G
Sbjct: 10 NWNDMEDRVDKSAWS---RLNDIIWEPRNVPVREDKKEF---LQLDKPVQDALLHAFGAL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+ S L N + I PE L + E++ + + Y+I L ++ N
Sbjct: 64 SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNTAKDVIN 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ P + K + Q + V+ E +++GF
Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKK---------------AANVILETALYHSGFYA 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L L KMV AE + +R S + + E ++ +
Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFGGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDM 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
E + E M KG + Y+ + N+ +G + T NP
Sbjct: 229 LIDNEKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281
>gi|70607897|ref|YP_256767.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
acidocaldarius DSM 639]
gi|68568545|gb|AAY81474.1| ribonucleoside-diphosphate reductase [Sulfolobus acidocaldarius DSM
639]
Length = 314
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/239 (19%), Positives = 92/239 (38%), Gaps = 19/239 (7%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
D N P+K Y W P ++ D WK L+ DE+ + + F
Sbjct: 26 DWNT-FPMK------LYQIGKRLFWDPAKIDFSKDKEDWK---KLSKDEKNYLLNIVSLF 75
Query: 90 ASSESLVANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147
+ E VA + +++ + E YL + AFEEA H+ F+ SL +++
Sbjct: 76 MAGEEAVAVDITPLISTMINEGRVEDVIYLEQFAFEEAKHAEAFRRFCDSLEINDDLTIF 135
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-A 206
P + + L S + + + + + + EG+ +G+
Sbjct: 136 TTEYNPWYQKI------FYEELPSVMWKLRVDPSPENLAVAVTTYNLYVEGVAAESGYKT 189
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
N M G+++ I DES H+ +G +I ++ +EN ++ ++ ++
Sbjct: 190 FKHIFNSLNIMPGLSKTVNLIATDESRHIAYGTYLITRLIVENGESIYRKAIEQFNKLV 248
>gi|262047451|ref|ZP_06020407.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus MV-3A-US]
gi|260572221|gb|EEX28785.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus MV-3A-US]
Length = 311
Score = 75.2 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/296 (16%), Positives = 91/296 (30%), Gaps = 29/296 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + AW + W P VP+++D + L + + G
Sbjct: 10 NWNDMEDRVDKSAWS---RLNDIIWEPRNVPVREDKKEF---LQLDKPVQDALLHAFGAL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+ S L N + I PE L + E++ + + Y+I L ++ N
Sbjct: 64 SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNTAKDVIN 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ P + K + Q + V+ E +++GF
Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKK---------------AANVILETALYHSGFYA 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L L KMV AE + +R S + + E ++ +
Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDV 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
E + E M KG + Y+ + N+ +G + T NP
Sbjct: 229 LIDNEKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281
>gi|302530556|ref|ZP_07282898.1| ribonucleotide-diphosphate reductase subunit beta [Streptomyces sp.
AA4]
gi|302439451|gb|EFL11267.1| ribonucleotide-diphosphate reductase subunit beta [Streptomyces sp.
AA4]
Length = 323
Score = 75.2 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/266 (15%), Positives = 88/266 (33%), Gaps = 15/266 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVL 102
++ W P ++ + W + LT +++ + F + E V +
Sbjct: 29 LFVKGNKKFWNPADLDFSKEREGW---DSLTPEQQRSTTYLVAQFIAGEEAVTEDIQPFM 85
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
YL + FEEA H F+ + ++GLD+ + ++
Sbjct: 86 RAMSATGRFGDEMYLTQFCFEEAKHVEVFRRWMDAVGLDDD-------LHSYVAENPHYR 138
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIA 221
+ + L + ++ + V EG TG+ + + + G+
Sbjct: 139 KLFYEELPQSLRALEDDPSPLNQIRASVTYNHVIEGSLALTGYYSWQLICTQNQILPGMQ 198
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
E ++I DE H+ +G + + Q++ +L A + I + +
Sbjct: 199 ELVRHIGDDERRHMAWGTFTCRRHVAADDA-MWDAVQERMGELLPHALGM-IQWVQDQFE 256
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQI 307
+ + QY A RR I
Sbjct: 257 EVPFDNDPEELLQYAADRAQRRLGAI 282
>gi|108801178|ref|YP_641375.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
sp. MCS]
gi|119870310|ref|YP_940262.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
sp. KMS]
gi|123069734|sp|Q1B465|RIR2H_MYCSS RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|238055309|sp|A1UKW4|RIR2H_MYCSK RecName: Full=R2-like ligand binding oxidase; AltName:
Full=Ribonucleotide reductase R2 subunit homolog;
AltName: Full=Ribonucleotide reductase small subunit
homolog
gi|108771597|gb|ABG10319.1| putative ribonucleoside-diphosphate reductase (beta chain) NrdB
(ribonucleotide reductase small chain) [Mycobacterium
sp. MCS]
gi|119696399|gb|ABL93472.1| putative ribonucleoside-diphosphate reductase [Mycobacterium sp.
KMS]
Length = 312
Score = 74.8 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 48/264 (18%), Positives = 95/264 (35%), Gaps = 20/264 (7%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+S + L D R F + E V +A R
Sbjct: 27 GNAKFWDPADIDFSRDRADWESLSNLERDWA---TRLCAQFIAGEEAVTQDIQPFMAAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ + + ++ +
Sbjct: 84 AEGRLGDEMYLTQFAFEEAKHTQVFRMWLDAVGMTDD-------LQCYLDDLPSYRQMFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQ 225
+ L + T + ++ + V EGM TG+ + + G+ E +
Sbjct: 137 EELPASLEALATDPSPAAQVRASATYNHVIEGMMALTGYYAWHRICVDRKVLPGMQELVR 196
Query: 226 YIMRDESLHLNFGIDVI-NQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
I DE H+ +G + ++ + E + L + + ++ +P GF
Sbjct: 197 RIGDDERRHMAWGTFTCRRHVAADDANWEVFENRMNELIPLALSNTDDSFALYDEIPFGF 256
Query: 285 VGLNAPSCEQYMQFIANRRCHQIG 308
E++ Q+ A++ + G
Sbjct: 257 AK------EEFQQYAADKGMRRFG 274
>gi|298247783|ref|ZP_06971588.1| ribonucleotide reductase [Ktedonobacter racemifer DSM 44963]
gi|297550442|gb|EFH84308.1| ribonucleotide reductase [Ktedonobacter racemifer DSM 44963]
Length = 293
Score = 74.8 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 20/228 (8%)
Query: 31 VNQLLPLKYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKR-NLGF 88
+ +LP++ Y A W P ++ + D W+ L +D R ++ L F
Sbjct: 18 RHDILPMR------LYHKAKKLGTWDPRDIDLSQDCQDWQQ---LAEDPRTRLRNLILSF 68
Query: 89 FASSESLVANNIVLAIY-RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFN 147
A E++ + + L + E +L +EE H+ F+ I+ + EG+L
Sbjct: 69 QAGEEAVTLDLLPLIMTVAREGRLEEELFLTTFLWEEGKHTEFFRRILDEVMQAEGDL-- 126
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FA 206
+ N ++ L T + + ++ ++ EG+ TG F+
Sbjct: 127 -----HGVRTANNTRDLFSDDLPREMNLLLTDPSPVNQARASVLYNMIVEGVLAETGYFS 181
Query: 207 QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
L + N M G+ + QYI RDES H+ +G+ +I+++ ++ LW
Sbjct: 182 FFRLLTQNNIMPGLQQGIQYIKRDESRHIAYGVFLISRLVAQDKSLWP 229
>gi|261418216|ref|YP_003251898.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus sp.
Y412MC61]
gi|319767824|ref|YP_004133325.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
gi|261374673|gb|ACX77416.1| ribonucleotide reductase [Geobacillus sp. Y412MC61]
gi|317112690|gb|ADU95182.1| ribonucleotide reductase [Geobacillus sp. Y412MC52]
Length = 302
Score = 74.8 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/272 (15%), Positives = 91/272 (33%), Gaps = 26/272 (9%)
Query: 38 KYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
++ ++ Y A N W P ++ D + LT +E++ + F++ E V
Sbjct: 17 EHP-MYKLYEKAKRNGKWNPADIDFSQDKEDF---ARLTSEEKIAALPLVAGFSAGEEAV 72
Query: 97 ANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
+ + E +L +EA H F +G+ +L S
Sbjct: 73 TLDILPMAHALARQGRLEDVMFLTTFMHDEAKHVEMFSRWQQEVGIGAMDL--------S 124
Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-QILSLGR 213
+ ++ + + L T D+ + ++ V+ ++ EG +G+ +
Sbjct: 125 VFHNDHYKRIFYEALPEAMNRLYTDDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKK 184
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----------TKEFQQKSRT 263
A G+ + Y+ DE H+ FG+ I ++ EN +
Sbjct: 185 AGLFPGLLQGIDYLNMDEGRHIQFGLYTIQRLVNENERYYDLFIQYMDELWPHVVGYVAY 244
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
+ + + + LN +Q+
Sbjct: 245 LTELGKRQQQLARTYALEIDYDMLNNYVVKQF 276
>gi|148688625|gb|EDL20572.1| mCG1032193 [Mus musculus]
Length = 150
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 20/145 (13%)
Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
+P + KA+WAL++ D + + + + F V EG++F FA IL L
Sbjct: 1 MPCVKKKADWALRWI------------GDKEAAYGERVVAFAAV-EGIFFSGSFASILWL 47
Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
+ M G+ + I RDE LH +F + + K +Q+ + ++ A +
Sbjct: 48 KKRGLMPGLTFSNELISRDEGLHWDFACLMFKHLA-------HKPSEQRVKEIITTAVRI 100
Query: 272 EIAYAHETMPKGFVGLNAPSCEQYM 296
E + E +P +G++ +QY+
Sbjct: 101 EQEFLTEALPVKLIGMSCTLMKQYI 125
>gi|297529069|ref|YP_003670344.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
gi|297252321|gb|ADI25767.1| ribonucleotide reductase [Geobacillus sp. C56-T3]
Length = 315
Score = 74.4 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/272 (15%), Positives = 91/272 (33%), Gaps = 26/272 (9%)
Query: 38 KYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
++ ++ Y A N W P ++ D + LT +E++ + F++ E V
Sbjct: 30 EHP-MYKLYEKAKRNGKWNPADIDFSQDKEDF---ARLTSEEKIAALPLVAGFSAGEEAV 85
Query: 97 ANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
+ + E +L +EA H F +G+ +L S
Sbjct: 86 TLDILPMTNALARQGRLEDVMFLTTFMHDEAKHVEMFSRWQQEVGIGAMDL--------S 137
Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-QILSLGR 213
+ ++ + + L T D+ + ++ V+ ++ EG +G+ +
Sbjct: 138 VFHNDHYKRIFYEALPEAMNRLYTDDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKK 197
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW----------TKEFQQKSRT 263
A G+ + Y+ DE H+ FG+ I ++ EN +
Sbjct: 198 AGLFPGLLQGIDYLNMDEGRHIQFGLYTIQRLVNENERYYDLFIQYMDELWPHVVGYVAY 257
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
+ + + + LN +Q+
Sbjct: 258 LTELGKRQQQLARTYALEIDYDMLNNYVVKQF 289
>gi|74419022|gb|ABA03237.1| ribonucleoside diphosphate reductase small subunit [Enterobacteria
phage LZ7]
Length = 244
Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 69/185 (37%), Gaps = 9/185 (4%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + VN+ + M + ++ E + + W P EV +
Sbjct: 1 MSTVFN-TSPVNILTEPMFFGSGLGLARYDIQ--RHRVFEELIEKSLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
D A + N L ++ + NL + + +S+ + +S+P ++ F
Sbjct: 58 DAAQF---NKLPQYQQDIFTNNLKYQSLLDSIQGRAPSAVLMSLISDPSLDTWVATWTFS 114
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +HS ++ +I+ +L D ++F+ +I +A +Y + + +
Sbjct: 115 ETIHSRSYTHIMRNLYADPSKVFDEIVLDKAIMKRAESIGRYYDDVLDKTRIWENAKENF 174
Query: 184 EFLQD 188
+ +
Sbjct: 175 SYFAE 179
>gi|227878195|ref|ZP_03996169.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
crispatus JV-V01]
gi|256844086|ref|ZP_05549573.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus 125-2-CHN]
gi|256850509|ref|ZP_05555936.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
crispatus MV-1A-US]
gi|312976830|ref|ZP_07788579.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus CTV-05]
gi|227862226|gb|EEJ69771.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
crispatus JV-V01]
gi|256613991|gb|EEU19193.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus 125-2-CHN]
gi|256712714|gb|EEU27708.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
crispatus MV-1A-US]
gi|310896158|gb|EFQ45223.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus CTV-05]
Length = 311
Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/296 (16%), Positives = 90/296 (30%), Gaps = 29/296 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + AW + W P VP+++D + L + + G
Sbjct: 10 NWNDMEDRVDKSAWS---RLNDIIWEPRNVPVREDKKEF---LQLDKPVQDALLHAFGAL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+ S L N + I PE L + E++ + + Y+I L ++ N
Sbjct: 64 SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNIAKDVIN 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ P + K + Q + V+ E +++ F
Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKKV---------------ANVILETALYHSAFYA 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L L KMV AE + +R S + + E ++ +
Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDV 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
E + E M KG + Y+ + N+ +G + T NP
Sbjct: 229 LIDNEKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281
>gi|332976575|gb|EGK13416.1| ribonucleotide-diphosphate reductase subunit beta [Desmospora sp.
8437]
Length = 295
Score = 74.1 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 51/263 (19%), Positives = 96/263 (36%), Gaps = 20/263 (7%)
Query: 34 LLPLKYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
+LP++ Y A W P ++ D W + N + L +
Sbjct: 15 MLPMR------LYHKAKKLGTWDPKDIDFSQDRKDWATFNEIEKGMSLRLNSVFLG-GEE 67
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
++ + + E YL +EEA H F+ ++ LG+
Sbjct: 68 AVTKDLLPLIQVIANEGRLEEEMYLTTFLWEEAKHVEVFRRMVDELGIT---------GD 118
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-QILSL 211
SI N+ + + L + + + + ++ EGM TG+ +S
Sbjct: 119 LSIYHSDNYKKIFYEYLPEAMERLTRDPSPEAQAEASVTYNMIVEGMLAETGYHSTFMSY 178
Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
R M G + ++Y+ RDES H+ +G+ +++++ E+ H+W ++ M A L
Sbjct: 179 KRLGIMPGTVQAFEYLKRDESRHICYGVYLLSRLIAEHDHIWDVVNKRMELLMAP-AIGL 237
Query: 272 EIAYAHETMPKGFVGLNAPSCEQ 294
E F GL+ Q
Sbjct: 238 VNDLIAEVEELPF-GLDKNEMVQ 259
>gi|317122349|ref|YP_004102352.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885]
gi|315592329|gb|ADU51625.1| ribonucleotide reductase [Thermaerobacter marianensis DSM 12885]
Length = 359
Score = 73.7 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 20/226 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
L P++ Y A W P + ++ D WK L D ++ + R + FA+
Sbjct: 35 DLPPMR------LYHKAKKFGTWDPRAIDLRQDKEDWK---LLNDAQKDALLRLVSLFAA 85
Query: 92 SESLVANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
E V + ++ + E +L +EEA H+ + + + GE + Y
Sbjct: 86 GEESVTLDLLPLIMVIAREGRLEEEMFLTTFLWEEAKHTEFMRRFLDEVAGVSGEDLHHY 145
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FAQI 208
++ + + L + + + ++ EG+ TG +A
Sbjct: 146 HT-------PSYKKIFYEELPQAMNRLLDDPSPAAQAEASVTYNLIVEGVLAETGYYAFY 198
Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+L R M G + + RDES HL +G+ ++ ++ + +W
Sbjct: 199 RTLQRQGVMPGFVQGIRNFQRDESRHLAYGVFLLQRLVAADDSIWN 244
>gi|296169397|ref|ZP_06851020.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295895947|gb|EFG75639.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 313
Score = 73.7 bits (179), Expect = 5e-11, Method: Composition-based stats.
Identities = 44/245 (17%), Positives = 85/245 (34%), Gaps = 14/245 (5%)
Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYRHLSNP 111
W P + D A W+ L+D ER+ + R F + E V +A R
Sbjct: 32 WDPANIDFSRDSADWE---ALSDRERVYVTRLCAGFIAGEEAVTQDIQPFMAAMRAEGRL 88
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
YL + AFEEA H+ F+ + ++G+ + + + + + L
Sbjct: 89 GDEMYLTQFAFEEAKHTQAFRLWLDAVGVRDD-------LHSFLDQTPAYRQLFDEELHE 141
Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG-RANKMVGIAEQYQYIMRD 230
T + ++ + + EGM TG+ + + G+ + ++I D
Sbjct: 142 SLNTLYVDPSPAAQVRASVTYNHIIEGMLALTGYYAWHKICVEHGILPGMQQLIRHIGDD 201
Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
E H+ +G + + WT F+ + ++ L + L+
Sbjct: 202 ERRHMAWGTFTCRRHVAADDTNWTV-FETRMNELIPLGQRLIDEGSALYGDDIPFNLSID 260
Query: 291 SCEQY 295
Y
Sbjct: 261 EMRTY 265
>gi|221309910|ref|ZP_03591757.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. 168]
gi|221314233|ref|ZP_03596038.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. NCIB 3610]
gi|221319156|ref|ZP_03600450.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. JH642]
gi|221323429|ref|ZP_03604723.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. SMY]
Length = 195
Score = 73.3 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 15/186 (8%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L +E+ + L ++ N + +
Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANW 161
H+ + + L A E VH+ ++ I +L E E+F + + KA
Sbjct: 78 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKKART 137
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ +T+ K D+ L V V E FY+GF L K++
Sbjct: 138 IVSVYKTI---------KKNDEISLFKGMVASVFLESFLFYSGFYYPLYFYGQGKLMQSG 188
Query: 222 EQYQYI 227
E I
Sbjct: 189 EIINLI 194
>gi|219847941|ref|YP_002462374.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus
aggregans DSM 9485]
gi|219542200|gb|ACL23938.1| ribonucleotide reductase [Chloroflexus aggregans DSM 9485]
Length = 297
Score = 73.3 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 54/270 (20%), Positives = 109/270 (40%), Gaps = 19/270 (7%)
Query: 45 KYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN--IV 101
+ A W P+ + D+ W N L+D+ER ++ R F + E V + +
Sbjct: 22 LFEKAKQFGIWNPSLLDFSRDIDDW---NRLSDEERDLLLRLTALFQAGEEAVTLDLLPL 78
Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
+ H E +L FEEA H+ F I+ + + +L S ++
Sbjct: 79 IKAIAHDGRLEEELFLTTFLFEEAKHTDFFARFISEVARVDPDL--------SRYHTPSY 130
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-LGRANKMVGI 220
L + + + ++ EG+ TG+ + L N M G+
Sbjct: 131 RALIYDALPRAMQRLEHDPSPFNLAEASLTYNMIVEGVLAETGYHGYFTILDTHNLMPGV 190
Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE-ATLLEIAYAHET 279
E + + +DES H+ +GI +++++ + +W ++ + ++H + EI +++T
Sbjct: 191 REGIRLLKQDESRHIAYGIYLLSRLIAADRQIWDHIVERMNELVIHALGVIDEIFTSYDT 250
Query: 280 MPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
MP GL + + RR +++ L
Sbjct: 251 MP---FGLQIETFSTFALNQFQRRLNRLEL 277
>gi|90018206|gb|ABD83916.1| ribonucleotide reductase M2 polypeptide [Ictalurus punctatus]
Length = 139
Score = 73.3 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 20/150 (13%)
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
LFN +P + KA+WAL + + D +F + + F V EG++F
Sbjct: 10 LFNAVETLPCVKKKADWALNWI------------GNKDAQFGERVVAFAAV-EGIFFSGS 56
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
FA I L + M G+ + I RDE LH +F + + K + +++
Sbjct: 57 FASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVN-------KPSEATVKSI 109
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQ 294
+ A +E + + +P +G+N +Q
Sbjct: 110 IVNAVQIEQEFLTQALPVKLIGMNCDLMKQ 139
>gi|227889328|ref|ZP_04007133.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
johnsonii ATCC 33200]
gi|227850130|gb|EEJ60216.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
johnsonii ATCC 33200]
Length = 313
Score = 72.9 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/275 (12%), Positives = 88/275 (32%), Gaps = 22/275 (8%)
Query: 66 ALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEA 125
K L +E+ +I + G S +L + I + N E + E+
Sbjct: 41 KDQKEFLHLPRNEQTVILHSFGSLTLSSTLQMKVALSEIKKDAENSEEVAVYNALQYLES 100
Query: 126 VHSHTFQYIITSLGL--DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
+++ + Y++ + + + + P + K Q+ ++
Sbjct: 101 INNKAYSYVLAEFSDSKKQEDAYEWANQNPYLQKKMKLLNTVYQSGNAIQKK-------- 152
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ G++ + F + G+ K+ AE +Y +R +L+ +
Sbjct: 153 ------AAHVFLSTGLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITTLNGIYTGIKFR 205
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ + + + E+++ + E Y+ + N+
Sbjct: 206 RDFFKLSKKEQNKVHDWVYDLCDNLYDNELSHIKLLYQNTDL---ENKVEHYIHYTLNKA 262
Query: 304 CHQIGLEPLFKYTENPFPWM--SEVIDLKKEKNFF 336
+G EP + + + +++ ++FF
Sbjct: 263 LMNLGQEPKYPENVETLDPILTTGLMESAMIEDFF 297
>gi|156743708|ref|YP_001433837.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus
castenholzii DSM 13941]
gi|156235036|gb|ABU59819.1| ribonucleotide reductase [Roseiflexus castenholzii DSM 13941]
Length = 295
Score = 72.9 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 54/257 (21%), Positives = 108/257 (42%), Gaps = 16/257 (6%)
Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN--IVLAIYRHLSNP 111
W P+++ D+ W++ LTDDER ++ R F + E V + ++A
Sbjct: 33 WNPSDIDFSQDMRDWQT---LTDDERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 89
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
E +L +EEA H+ F +T + G+L + + AN+ + L +
Sbjct: 90 EEELFLTSFLWEEAKHTDFFNRFLTEVAGVTGDLSHYHT--------ANYRALIHEALPA 141
Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIMRD 230
+ + + ++ EG+ TG+ A L R N M G + + +D
Sbjct: 142 AMERLRDDPSPEAQAIASLTYNMIVEGVLAETGYHAYFTMLERRNLMPGTRKGIGLLKQD 201
Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
ES H+ +G+ +++++ P LW ++ + +++ +++ A+A GL+
Sbjct: 202 ESRHIAYGVYLLSRLINAEPRLWDVVVERMNELVVYAMGVIDDAFACY--EVVPFGLSHD 259
Query: 291 SCEQYMQFIANRRCHQI 307
Q+ RR +I
Sbjct: 260 DFMQFAMGQFERRLDRI 276
>gi|328553048|gb|AEB23540.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
amyloliquefaciens TA208]
Length = 195
Score = 72.9 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 15/186 (8%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L +E+ + L ++ N + +
Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANW 161
H+ + + L A E VH+ ++ I +L E E+F + + KA
Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEKINEVFEWVKNNRFLQKKART 137
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ + + + D L V V E FY+GF L K++
Sbjct: 138 IVLIYKAV---------QKNDDISLFKAMVASVFLESFLFYSGFYYPLYFYGQGKLMQSG 188
Query: 222 EQYQYI 227
E I
Sbjct: 189 EIINLI 194
>gi|148656105|ref|YP_001276310.1| ribonucleotide-diphosphate reductase subunit beta [Roseiflexus sp.
RS-1]
gi|148568215|gb|ABQ90360.1| ribonucleotide reductase [Roseiflexus sp. RS-1]
Length = 297
Score = 72.5 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/257 (19%), Positives = 106/257 (41%), Gaps = 16/257 (6%)
Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN--IVLAIYRHLSNP 111
W P+++ D+ W++ LT DER ++ R F + E V + ++A
Sbjct: 32 WNPSDIDFSQDVRDWQT---LTADERDLVLRLTSLFQAGEEAVTLDLLPLVATIAAEGRI 88
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
E +L +EEA H+ F +T + G+L + + +N+ + L +
Sbjct: 89 EEELFLTSFLWEEAKHTDFFNRFLTEVTGVTGDLSHYHT--------SNYRALIHEALPA 140
Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIMRD 230
+ + + ++ EG+ TG+ A L R + M G + + +D
Sbjct: 141 AMGRLRDDPSPEAQAIASLTYNMIVEGVLAETGYHAYFTMLERRDLMPGTRKGIGLLKQD 200
Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
ES H+ +G+ +++++ P LW ++ + +++ +++ A+A GL+
Sbjct: 201 ESRHIAYGVYLLSRLINAEPRLWDVIVERMNELVVYAMGVIDDAFACY--EVVPFGLSHD 258
Query: 291 SCEQYMQFIANRRCHQI 307
+ RR +I
Sbjct: 259 DFMHFAMGQFQRRLDRI 275
>gi|325003309|ref|ZP_08124421.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia
sp. P1]
Length = 326
Score = 72.5 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/276 (16%), Positives = 88/276 (31%), Gaps = 19/276 (6%)
Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
P++ + HW P+ + D + +TDDER F + E
Sbjct: 29 FPMR------LFSKGNGKHWDPSAIDFTQDAEDF---AAMTDDERWQTCALAAQFMAGEE 79
Query: 95 LVAN--NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
V +A YL + +EEA H+ F+ ++G+
Sbjct: 80 SVTQDLQPFVAAMAAEGRLGDEMYLTQFVYEEAKHTQAFRLWFDAVGM-------TGDLH 132
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
I ++ +T+ L + + L+ + V EG TG+ +
Sbjct: 133 SYIEHNEHYLEIFTRALPESLYALADDPSPANQLRASVTYNHVVEGTLALTGYFTWHKIC 192
Query: 213 -RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
+ G+ + ++I DE H+ +G + + LW + M+ ++
Sbjct: 193 AERGILPGMQKVIKHIGDDERRHMAWGTFTCRRHVAADDALWDVVDGRMQELMVPAMGVV 252
Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
+ G++ +Y RR I
Sbjct: 253 TGTVDRWPDGQAPFGIDLNELAEYAMDKVGRRLGAI 288
>gi|313902757|ref|ZP_07836155.1| ribonucleotide reductase [Thermaerobacter subterraneus DSM 13965]
gi|313467054|gb|EFR62570.1| ribonucleotide reductase [Thermaerobacter subterraneus DSM 13965]
Length = 349
Score = 72.1 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/226 (18%), Positives = 84/226 (37%), Gaps = 20/226 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
L P++ Y A W P + + D W N L D ++ + R + FA+
Sbjct: 41 DLPPMR------LYHKAKKFGTWDPRAIDLSQDREDW---NLLNDAQKDALLRLVSLFAA 91
Query: 92 SESLVANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
E V + ++ + E +L +EEA H+ + + + G + Y
Sbjct: 92 GEESVTLDLLPLIMVIAREGRLEEEMFLTTFLWEEAKHTEFMRRFLDEVAGVSGADLHHY 151
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FAQI 208
++ + + L + + + ++ EG+ TG +A
Sbjct: 152 HT-------PSYRKIFYEELPRAMNRLLEDPSPAAQAEASVTYNLIVEGVLAETGYYAFY 204
Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+L R M G + + RDES HL +G+ ++ ++ + +W
Sbjct: 205 RTLQRQGVMPGFIQGIRNFQRDESRHLAYGVFLLQRLVAADDAIWQ 250
>gi|293380498|ref|ZP_06626562.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus 214-1]
gi|290922932|gb|EFD99870.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
crispatus 214-1]
Length = 311
Score = 72.1 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/296 (16%), Positives = 89/296 (30%), Gaps = 29/296 (9%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N + AW + W P VP+++D + L + + G
Sbjct: 10 NWNDMEDRVDKSAWS---RLNDIIWEPRNVPVREDKKEF---LQLDKPVQDALLHAFGAL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+ S L N + I PE L + E++ + + Y+I L ++ N
Sbjct: 64 SFSSGLQMKNGLEQIKVDAITPEEAAVLNALQYLESIANKGYSYVINELTDSNIAKDVIN 123
Query: 148 MYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
+ P + K + Q + V+ E +++ F
Sbjct: 124 WADDNPYLQKKIRILNKIYQGGDALQKKV---------------ANVILETALYHSAFYA 168
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L L KMV AE + +R S + + E ++ +
Sbjct: 169 PLYLFGQGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGYQKLGKTEQAELKEWIDNLYDV 228
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPF 320
+ E M KG + Y+ + N+ +G + T NP
Sbjct: 229 LIDNAKKHI-ELMYKGTDWI--DDVTHYLYYSVNKAYLNLGFSAKYPDTSDSINPI 281
>gi|331699199|ref|YP_004335438.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia
dioxanivorans CB1190]
gi|326953888|gb|AEA27585.1| ribonucleotide-diphosphate reductase subunit beta [Pseudonocardia
dioxanivorans CB1190]
Length = 324
Score = 72.1 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/277 (15%), Positives = 95/277 (34%), Gaps = 20/277 (7%)
Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
P++ + HW P ++ D +TDDER F + E
Sbjct: 26 FPMR------LFAKGNARHWNPADIDFSQDARD---IAAMTDDERWWTFALAAQFMAGEE 76
Query: 95 LVAN--NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
V +A YL + FEEA H+ F+ ++G+ E
Sbjct: 77 SVTQDLQPFVAAMAAEGRLADEMYLTQFVFEEAKHTDAFRRWFDAVGMTED-------LH 129
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
P I ++ +TQ L + + + + ++ + + EG TG+ +
Sbjct: 130 PFIEFNEHYMQIFTQELPASLYALAADPSPRNQVRASVTYNHIVEGTLALTGYFTWAKIC 189
Query: 213 -RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
+ G+ + ++I DE H+ +G + + ++ ++ M+ ++
Sbjct: 190 TSRGILPGMQQVIKHIGDDERRHMAWGTFTCRRHVAADDAMFDVVDERMQELMVPSMGVV 249
Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
+ G V + + ++ ++ ++G
Sbjct: 250 TGTFEKVEADGGQVPFDV-DMNELAEYAMDKLGRRLG 285
>gi|323167150|gb|EFZ52868.1| ribonucleoside-diphosphate reductase 2 subunit beta [Shigella
sonnei 53G]
Length = 177
Score = 71.7 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 8/140 (5%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W +N W+P +VP+ +D+ W++ LT E+ + R
Sbjct: 10 NWNKISDDKDLEVWN---RLTSNFWLPEKVPLSNDIPAWQT---LTVVEQQLTMRVFTGL 63
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
++L ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 64 TLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYA 123
Query: 148 MYREVPSITAKANWALQYTQ 167
E + KA Q+ +
Sbjct: 124 WSEENAPLQRKAQIIQQHYR 143
>gi|320450740|ref|YP_004202836.1| ribonucleoside-diphosphate reductase subunit beta [Thermus
scotoductus SA-01]
gi|320150909|gb|ADW22287.1| ribonucleoside-diphosphate reductase, subunit beta [Thermus
scotoductus SA-01]
Length = 299
Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/272 (15%), Positives = 87/272 (31%), Gaps = 31/272 (11%)
Query: 35 LPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSES 94
PLK Y A W P + +++D K+ L+ +++ F + E
Sbjct: 17 FPLK------LYHKAKRYFWDPQTIDLEEDQ---KTFQKLSPEQKEASLHLASLFVAGEE 67
Query: 95 LVANN--IVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
V + ++ + E +L +EA H F ++ +
Sbjct: 68 AVTLDLLPLVQVIAREGRLEEEMFLTTFLVDEAKHVEFFSLLLQAT---------AGEAN 118
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+N+ + + L + + ++ + ++ EG+ TG+
Sbjct: 119 LERFHGSNYRKIFYEELPQAMGRLLNDPSPEAQVEAAVTYNMIVEGVLAETGYYAYYRSA 178
Query: 213 RANKMVGIA-----EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
G A E ++I RDES H+ +GI +I + NP E +
Sbjct: 179 ELLNAQGFALPGTLEGIRHIQRDESRHIAYGIYLIARHVAANP-----ELFPVVERRMST 233
Query: 268 ATLLEIAYAHETMPKGFVGLNAP-SCEQYMQF 298
+ + G +++Q+
Sbjct: 234 LLPYALGVVQDIFQAYPEGFPLKLDMNEFIQY 265
>gi|213609160|ref|ZP_03368986.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
Length = 144
Score = 71.0 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 225 QYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEIAYAHETM 280
+ I RDE+LHL ++N + +++P + +E +Q+ + +A E +A
Sbjct: 1 RLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEKEWADYLF 60
Query: 281 PKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
G +GLN QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 61 RDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 108
>gi|157135887|ref|XP_001663605.1| hypothetical protein AaeL_AAEL013412 [Aedes aegypti]
gi|108870103|gb|EAT34328.1| conserved hypothetical protein [Aedes aegypti]
Length = 244
Score = 71.0 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 58 EVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYL 117
EV + DLA W+ L E+ I L FF +S+ + N+V + L E R +
Sbjct: 142 EVDLSKDLADWE---KLKSGEKHFISHVLAFFVASDGSMNENLVERFSQELQVTEARCFY 198
Query: 118 LRQAFEEAVHSHTFQYIITSLGL---DEGELFNMYREVPSITAKAN 160
Q E VHS + +I + LFN +P + KA
Sbjct: 199 GFQIAMENVHSEMYSLLIDTYIRDSKQREYLFNAIDNLPCVKKKAE 244
>gi|163848862|ref|YP_001636906.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus
aurantiacus J-10-fl]
gi|222526817|ref|YP_002571288.1| ribonucleotide-diphosphate reductase subunit beta [Chloroflexus sp.
Y-400-fl]
gi|163670151|gb|ABY36517.1| ribonucleotide reductase [Chloroflexus aurantiacus J-10-fl]
gi|222450696|gb|ACM54962.1| ribonucleotide reductase [Chloroflexus sp. Y-400-fl]
Length = 297
Score = 70.2 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/260 (19%), Positives = 103/260 (39%), Gaps = 18/260 (6%)
Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANN--IVLAIYRHLSNP 111
W P+ + + D+ W+ L D+ER ++ R F + E V + ++
Sbjct: 32 WNPSLIDLSRDIRDWEQ---LRDEERDLLLRLTALFQAGEEAVTLDLLPLIRTIAREGRL 88
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
E YL FEEA H+ F I+ + + +L S A++ + L +
Sbjct: 89 EEELYLTTFLFEEAKHTDFFARFISEVARVDPDL--------SRYHTASYRALIYEALPA 140
Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANKMVGIAEQYQYIMRD 230
+ + + ++ EG+ TG+ A L + M G E + + +D
Sbjct: 141 ALHRLDHDPSPLNLAEASLTYNMIVEGVLAETGYHAYFTILDSQDIMPGTREGIRLLKQD 200
Query: 231 ESLHLNFGIDVINQIKIENPHLWTKEFQQ-KSRTMLHEATLLEIAYAHETMPKGFVGLNA 289
ES H+ +G+ +++++ +P +W ++ + + EI ++ MP L
Sbjct: 201 ESRHIAYGVYLLSRLIATDPQVWDHIVERMNELVLYAMGVIDEIFACYDPMP---FNLQI 257
Query: 290 PSCEQYMQFIANRRCHQIGL 309
+ + RR +++ L
Sbjct: 258 ETFSTFALNQFQRRLNRLEL 277
>gi|56421306|ref|YP_148624.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus
kaustophilus HTA426]
gi|10800082|dbj|BAB16601.1| unnamed protein product [Geobacillus thermoleovorans]
gi|56381148|dbj|BAD77056.1| ribonuleotide reductase small subunit [Geobacillus kaustophilus
HTA426]
Length = 302
Score = 70.2 bits (170), Expect = 5e-10, Method: Composition-based stats.
Identities = 48/283 (16%), Positives = 100/283 (35%), Gaps = 29/283 (10%)
Query: 38 KYGWAWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
++ ++ Y A N W P ++ D + S ++++ + GF A E++
Sbjct: 17 EHP-MFKLYEKAKRNGKWNPADIDFSQDQKDFASLT--SEEKISALPLVAGFSAGEEAVT 73
Query: 97 ANNIVLAIY-RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSI 155
+ + +A E +L +EA H F ++G+ + +L S+
Sbjct: 74 LDILPMAHALARQGRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDL--------SV 125
Query: 156 TAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-QILSLGRA 214
++ + + L D+ + ++ V+ ++ EG +G+ +A
Sbjct: 126 FHNDHYKRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKA 185
Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
G+ + Y+ DE H+ FGI I +I E+ + + + E I
Sbjct: 186 GLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYY-----ELFIRYMDELWPHVIG 240
Query: 275 YAHETMPKGF----------VGLNAPSCEQYMQFIANRRCHQI 307
Y G + ++ Y+ N R QI
Sbjct: 241 YVDYLTELGKRQQQLARTYALEIDYDLLRHYVIKQFNLRKKQI 283
>gi|227894062|ref|ZP_04011867.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
ultunensis DSM 16047]
gi|227864144|gb|EEJ71565.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
ultunensis DSM 16047]
Length = 269
Score = 69.8 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 46/286 (16%), Positives = 91/286 (31%), Gaps = 26/286 (9%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNL 86
+ N + AW + W P VP+++D + L ++ + R
Sbjct: 7 EAINWNDMEDRVDRSAWA---RLNDIIWEPRHVPVKEDQKEF---LKLDKPKQTAVLRAF 60
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GE 144
G A + L + I + PE L + E++ + + Y+I LG+D+ E
Sbjct: 61 GSLALASGLQMRIGLDQIKQDAITPEESAVLNALQYLESIANKGYSYVIHELGIDDDVQE 120
Query: 145 LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG 204
F+ + K + + Q+ + VV E ++
Sbjct: 121 TFDWANNNYYLQRKIHILNKIYQSGDALQKKAAD---------------VVLETALYHAD 165
Query: 205 FAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTM 264
F L L KMV AE + +R S + + + ++ +
Sbjct: 166 FYAPLLLFGEGKMVRTAEIVKLALRGTSFSGIYPGYKFRLGFQKLGKEEKSKLKKWIDNL 225
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
+ +E + G + Y+ + N+ +GL
Sbjct: 226 FSKLVTIEEKHIEAMYKD--TGW-IDDAKHYLYYSTNKAYLNLGLP 268
>gi|121730673|ref|ZP_01682814.1| ATP-dependent Zn proteases [Vibrio cholerae V52]
gi|121627739|gb|EAX60372.1| ATP-dependent Zn proteases [Vibrio cholerae V52]
Length = 129
Score = 69.8 bits (169), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+E +Q+S + EA E +A G +GLN QY+++I N R +GLEP +
Sbjct: 19 EECKQESFDLFKEAAEQEKEWAEYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLEPAY 78
Query: 314 K-YTENPFPWMSEVIDLKK 331
T NP PW++ +
Sbjct: 79 PAATNNPIPWINAWLSSDN 97
>gi|122892861|gb|ABM67449.1| NrdB [Xanthomonas campestris]
gi|122892863|gb|ABM67450.1| NrdB [Xanthomonas campestris]
gi|122892865|gb|ABM67451.1| NrdB [Xanthomonas campestris]
gi|122892867|gb|ABM67452.1| NrdB [Xanthomonas campestris]
gi|122892869|gb|ABM67453.1| NrdB [Xanthomonas campestris]
gi|122892871|gb|ABM67454.1| NrdB [Xanthomonas campestris]
gi|122892873|gb|ABM67455.1| NrdB [Xanthomonas campestris]
gi|122892875|gb|ABM67456.1| NrdB [Xanthomonas campestris]
gi|122892877|gb|ABM67457.1| NrdB [Xanthomonas campestris]
gi|122892879|gb|ABM67458.1| NrdB [Xanthomonas campestris]
gi|122892881|gb|ABM67459.1| NrdB [Xanthomonas campestris]
gi|122892883|gb|ABM67460.1| NrdB [Xanthomonas campestris]
gi|122892885|gb|ABM67461.1| NrdB [Xanthomonas campestris]
gi|122892887|gb|ABM67462.1| NrdB [Xanthomonas campestris]
gi|122892889|gb|ABM67463.1| NrdB [Xanthomonas campestris]
gi|122892891|gb|ABM67464.1| NrdB [Xanthomonas campestris]
gi|122892893|gb|ABM67465.1| NrdB [Xanthomonas campestris]
gi|122892895|gb|ABM67466.1| NrdB [Xanthomonas campestris]
gi|122892897|gb|ABM67467.1| NrdB [Xanthomonas campestris]
gi|122892899|gb|ABM67468.1| NrdB [Xanthomonas campestris]
gi|122892901|gb|ABM67469.1| NrdB [Xanthomonas campestris]
gi|122892903|gb|ABM67470.1| NrdB [Xanthomonas campestris]
gi|122892905|gb|ABM67471.1| NrdB [Xanthomonas campestris]
gi|122892907|gb|ABM67472.1| NrdB [Xanthomonas campestris]
gi|122892909|gb|ABM67473.1| NrdB [Xanthomonas campestris]
gi|122892911|gb|ABM67474.1| NrdB [Xanthomonas campestris]
gi|122892913|gb|ABM67475.1| NrdB [Xanthomonas campestris]
gi|122892915|gb|ABM67476.1| NrdB [Xanthomonas campestris]
gi|122892917|gb|ABM67477.1| NrdB [Xanthomonas campestris]
gi|122892919|gb|ABM67478.1| NrdB [Xanthomonas campestris]
gi|122892921|gb|ABM67479.1| NrdB [Xanthomonas campestris]
gi|122892923|gb|ABM67480.1| NrdB [Xanthomonas campestris]
gi|122892925|gb|ABM67481.1| NrdB [Xanthomonas campestris]
gi|122892927|gb|ABM67482.1| NrdB [Xanthomonas campestris]
gi|122892929|gb|ABM67483.1| NrdB [Xanthomonas campestris]
gi|122892931|gb|ABM67484.1| NrdB [Xanthomonas campestris]
gi|122892933|gb|ABM67485.1| NrdB [Xanthomonas campestris]
gi|122892935|gb|ABM67486.1| NrdB [Xanthomonas campestris]
gi|122892937|gb|ABM67487.1| NrdB [Xanthomonas campestris]
Length = 175
Score = 69.4 bits (168), Expect = 8e-10, Method: Composition-based stats.
Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 14/185 (7%)
Query: 56 PTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQ 115
P EV M+ D + L+ E+ +G A+ +S I + ++++P
Sbjct: 1 PDEVDMKGDARQYNE---LSAREKNAYDSIIGLLATLDSPQTRFIY-NVAEYITDPAAHA 56
Query: 116 YLLRQAFEEAVHSHTFQYIITSLG--LDEGELFNMYREVPSITAKANWALQYTQTLSSPS 173
+E +H+ ++ Y++ S+ D+ +F + R P+I + +
Sbjct: 57 NAAIIGQQEVIHNESYSYVLASITGLADQNRVFEIARTHPTIIKRNAPIMGAYDDF---- 112
Query: 174 FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESL 233
+D E L + + EG+ FY+GFA +L R N+M G + +I RDE
Sbjct: 113 ----MRDKTAETLIRALIQSSILEGINFYSGFAYFYNLVRQNRMTGTGKIISFINRDELA 168
Query: 234 HLNFG 238
H F
Sbjct: 169 HSKFI 173
>gi|293556438|ref|ZP_06675016.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E1039]
gi|291601402|gb|EFF31676.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E1039]
Length = 317
Score = 69.0 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 53/292 (18%), Positives = 102/292 (34%), Gaps = 25/292 (8%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ A + W+ T +P+++D W+ L+ ER + R L F A+ + + V I
Sbjct: 25 WERATSLFWLDTRIPIEEDREKWE---KLSLQERKQLNRLLLFLANLSTYQSIESVEVIR 81
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYREVPSITAKANWAL 163
+ + L F E V++ + I+ + E F+ P +
Sbjct: 82 NSERSQQEIAILNNLQFTEMVNTKAYNRILRVFNKEIDLQEEFDWIDTEPLVREYLEKID 141
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
Q GT + F+ V EG+ Y + + L V +
Sbjct: 142 TIYQ---------GTNPMKKRFM------VVCVEGLLNYAYLSYLFELWIEKGFVNLGSM 186
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP-K 282
I+R+ESLH + I + E KEF+ ++ L I ++ +
Sbjct: 187 LGMIVRNESLHCYYLNHKIRLLLRETKLEQVKEFKNWGVYIVDYFVELAIRLINDFYNLE 246
Query: 283 GFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKN 334
+ +Q AN IGL ++ E ++ ++ ++ +
Sbjct: 247 NSKTVAINLVKQ----EANHILTGIGLNKAYQIDEKKLVTINRYLNELRKHD 294
>gi|282852893|ref|ZP_06262234.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
gasseri 224-1]
gi|282556001|gb|EFB61622.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
gasseri 224-1]
Length = 277
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/244 (15%), Positives = 77/244 (31%), Gaps = 21/244 (8%)
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL-- 138
M+ + G A S +L + I + N E + E++++ + + +T
Sbjct: 1 MLLHSFGSLALSSTLQMKVSLSKIKQDAENSEEAAVYNALQYLESINNKAYGHALTEFST 60
Query: 139 -GLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
E FN + P + K Q+ D + ++
Sbjct: 61 SNEQRDEAFNWANQNPYLQKKMRLLNTVYQS-------------DNAIQKKAAHVFIS-T 106
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++ + F + G+ K+ AE +Y +R +L+ + + K
Sbjct: 107 GLYHSSFFGPLYLFGQH-KLPRTAELIKYALRITTLNGIYTGIKFRRDFFNLSKEEQKNI 165
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ + E+ + H GL E Y+ + N+ +G EP +
Sbjct: 166 HKWVYDLCDRLYANELNHIHLLYED--TGL-EDKVEHYIHYTLNKALMNLGQEPKYPENV 222
Query: 318 NPFP 321
Sbjct: 223 ETLD 226
>gi|213864815|ref|ZP_03386934.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. M223]
Length = 170
Score = 68.7 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 5/161 (3%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMYR 150
+++ ++ P L +F EAVH+ ++ I ++L + +
Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSE 126
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
E P + KA L + + + + F
Sbjct: 127 ENPPLQRKAQIILAHYVSDEPLKKKIASVFLESFLFYSGFW 167
>gi|229544146|ref|ZP_04433205.1| ribonucleotide reductase [Bacillus coagulans 36D1]
gi|229325285|gb|EEN90961.1| ribonucleotide reductase [Bacillus coagulans 36D1]
Length = 301
Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/279 (16%), Positives = 97/279 (34%), Gaps = 28/279 (10%)
Query: 27 ARSDVNQLLPLKYGWAWEKYLSACNNH-WMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+ + N P+ ++ Y A N W P ++ D + L ++ER+
Sbjct: 11 GQINWND--PM-----YKLYEKAKRNGGWNPADIDFSQDREDF---LQLREEERIASLPL 60
Query: 86 LGFFASSESLVA--NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
+ F++ E V +L E +L +EA H+ F ++G+ +
Sbjct: 61 ISSFSAGEEAVTLDILPMLHAMARQGRLEDTMFLTTFLHDEAKHTEMFSRWQQAVGVGDL 120
Query: 144 ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYT 203
+L S ++ + + L T D+ + ++ V+ ++ EG+ +
Sbjct: 121 DL--------SAYHNDSYKRIFYEALPEAMERLYTDDSPEAVIRAATVYNMIVEGVLAES 172
Query: 204 GFA-QILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSR 262
G+ +A GI + Y+ DE H+ FGI I ++ + N +
Sbjct: 173 GYYSFRQIYKKAGLFPGILQGIDYLNMDEGRHIQFGIYTIQRLVVGNEERFKLFHDYMDE 232
Query: 263 TMLHEATLLEIAYAHETMPKGFVG------LNAPSCEQY 295
+H ++E + + QY
Sbjct: 233 LWMHAYGVVEYLVGLAVLQREQSNFESQIVFEPDIMRQY 271
>gi|308183792|ref|YP_003927924.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
plantarum subsp. plantarum ST-III]
gi|308047718|gb|ADO00261.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
plantarum subsp. plantarum ST-III]
Length = 308
Score = 68.3 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/271 (13%), Positives = 75/271 (27%), Gaps = 26/271 (9%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
+ N W+ +P+ +D W+ L+D ++ I R L + + AI
Sbjct: 22 MWERLTTNFWLDIRIPITNDQTAWQQ---LSDTQQQAITRMLAGTSMLAVYQSEVGAPAI 78
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
+ L F ++VH+ + I +L G WA
Sbjct: 79 RHDRRTQQEESVLNTITFMKSVHAKSCTTIFRALIPGNG------------GESFTWADD 126
Query: 165 YTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQY 224
+ +D + F + ++ + +V +
Sbjct: 127 NANLQAEIDQLAQMSTSDMALQKKALFIL-----TETGLSFGKYWTILQTQALVNTYQML 181
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
I+R +L + E E Q T + E + +
Sbjct: 182 ANILRGSALFSAYIGYKFRLRFEELTVSDQTELQYWINTQFDQLMQTEKDFLEANLDDAT 241
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
+N S + AN +G +++
Sbjct: 242 EAINLAS------YGANHALMSLGFNAVYEV 266
>gi|148688624|gb|EDL20571.1| mCG140327 [Mus musculus]
Length = 65
Score = 67.9 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 297 QFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+F+A+ ++G +F+ ENPF +M E I L+ + NFFE RV EYQ+ +
Sbjct: 1 EFVADMLMLELGFNKIFRV-ENPFDFM-ENISLEGKTNFFEKRVGEYQRMGVMS 52
>gi|284046663|ref|YP_003397003.1| ribonucleotide reductase [Conexibacter woesei DSM 14684]
gi|283950884|gb|ADB53628.1| ribonucleotide reductase [Conexibacter woesei DSM 14684]
Length = 306
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/276 (18%), Positives = 92/276 (33%), Gaps = 14/276 (5%)
Query: 39 YGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN 98
YG + + HW ++ D W + + M FF + + A
Sbjct: 36 YGELYSLWERQ---HWAVQDLDFTQDKLDWHERFDEEERFARMYG-LSAFFIGEQRVAAE 91
Query: 99 NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAK 158
L + R +L Q +EA H F + + + E S
Sbjct: 92 LGPLMRAAPQED--MRLFLCTQIADEARHVAFFDRFYSEVDVLGVEGLEEKLAATSEHLN 149
Query: 159 ANWALQYTQTLSSPSFTTGTKDAD-QEFLQDLFVFYVVFEGMWFYTG-FAQILSLGRANK 216
+ + + + L S T+ D + ++ + ++++V EGM TG I R
Sbjct: 150 PEFGVLFDEMLKSRVDRLATEPEDLETLVEAITIYHMVIEGMLALTGQHFIIDYNEREGT 209
Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ--KSRTMLHEATLLEIA 274
+ G E + + RDE H+ FG + + +P + + + + A
Sbjct: 210 LPGFVEGFINVARDEHRHVAFGARFLRDMARSDPRHVAAIQRTLGEIAPVAEGVLKPKWA 269
Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIA-NRRCHQIGL 309
+ G++ + F A RR IGL
Sbjct: 270 PDDDDFE--IFGISVTETRAFA-FRALERRMKVIGL 302
>gi|289824705|ref|ZP_06544204.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
Length = 141
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
L + E+ + NL + +S+ + +A+ +S PE ++ AF
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAF 114
>gi|326383562|ref|ZP_08205248.1| ribonucleotide-diphosphate reductase subunit beta [Gordonia
neofelifaecis NRRL B-59395]
gi|326197646|gb|EGD54834.1| ribonucleotide-diphosphate reductase subunit beta [Gordonia
neofelifaecis NRRL B-59395]
Length = 297
Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 49/279 (17%), Positives = 89/279 (31%), Gaps = 21/279 (7%)
Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
Q PL+ + W P + D W GLTDD+R + F +
Sbjct: 3 WQSFPLR------LFTKGNAKTWDPASIDFSQDALDW---AGLTDDQRRSATYLVSQFVA 53
Query: 92 SESLVAN--NIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
E V + YL + +EA H+ F+ + ++GL E
Sbjct: 54 GEEAVTEDIRPFMNAMSAEDRFGDEMYLAQFCLDEAKHAQGFRLWMDAVGLTED------ 107
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
P + + + + L T + ++ + V EG TG+
Sbjct: 108 -LHPYVAENPFYRELFYEQLPQALRILNTDPSPVNQVRASVTYNHVIEGSLALTGYYAWR 166
Query: 210 SLG-RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
+ + + G+ + I DE+ H+ +G + + LW + +
Sbjct: 167 RICVESEILPGMQQLIGSIAEDETRHMAWGTFTCRRHVAADDSLWQVVTDRFGELVPLAM 226
Query: 269 TLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQI 307
+ I + + G++ Y A RR H I
Sbjct: 227 GM--IKWVDGQFDEAPFGIDNDVFLTYAADRAQRRLHAI 263
>gi|213646444|ref|ZP_03376497.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. J185]
Length = 141
Score = 67.1 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
L + E+ + NL + +S+ + +A+ +S PE ++ F
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETGRF 114
>gi|312601198|gb|ADQ90453.1| Ribonucleoside-diphosphate reductase beta chain [Mycoplasma
hyopneumoniae 168]
Length = 223
Score = 67.1 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/229 (15%), Positives = 77/229 (33%), Gaps = 23/229 (10%)
Query: 123 EEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
VH+ ++ I ++L E E N + +A + +
Sbjct: 1 MVGVHARSYGSIFSTLCSSEEIEEAHNWVINNEKLQKRARILIPFYVGED---------- 50
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
V + G Y GF L +K+ ++ + I+RD+ +H +
Sbjct: 51 -----PLKSKVAAALMPGFLLYGGFYLPFYLSARSKLPNTSDIIRLILRDKVIHNYYSGY 105
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+ + E ++ + +L++ LE Y ++ + VGL + + + + A
Sbjct: 106 KFQKKVEKLSPEKQDEIKKFTFDLLYKLIELEKDYLYDLYSE--VGLAESAIK-FSIYNA 162
Query: 301 NRRCHQIGLEPLFKYTENPF-PWMSEVID--LKKEKNFFETRVTEYQQG 346
+ +G + F E P + + + +FF + Y
Sbjct: 163 GKFLQNLGYDSPFSKEETEIEPEIFSQLSARADENHDFFSGNGSSYVMA 211
>gi|256111772|ref|ZP_05452743.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
melitensis bv. 3 str. Ether]
gi|265993237|ref|ZP_06105794.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
melitensis bv. 3 str. Ether]
gi|262764107|gb|EEZ10139.1| ribonucleotide-diphosphate reductase subunit beta [Brucella
melitensis bv. 3 str. Ether]
Length = 138
Score = 67.1 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 7/126 (5%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ W++ L E+ + R
Sbjct: 20 NWNRIEDDKDLEVWN---RLTGNFWLPEKVPLSNDIQSWET---LKPQEKQLTTRVFTGL 73
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
+++ + + P L +F EAVH+ ++ I ++L L ++ + Y
Sbjct: 74 TLLDTIQNAVGAVKLMDDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCLTP-DVDDAY 132
Query: 150 REVPSI 155
R
Sbjct: 133 RWSEEN 138
>gi|327440682|dbj|BAK17047.1| ribonucleotide reductase, beta subunit [Solibacillus silvestris
StLB046]
Length = 294
Score = 66.7 bits (161), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 16/218 (7%)
Query: 43 WEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
+ Y A W P ++ D WK L ++++L + F E V +I+
Sbjct: 18 YNLYQKAKKFGIWNPVDIDFTQDKEDWK---KLNEEQQLEVLTQFAQFIGGEEAVTQDIL 74
Query: 102 LAIYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKA 159
I E YL FEEA H+ F + +G+ + +
Sbjct: 75 PMIMAVSKKGWFEEESYLTTFLFEEAKHAEFFSLFLEEIGVKD---------DLTHLLTP 125
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMV 218
+ + +TL + + + + + + EG+ TG+ +L AN
Sbjct: 126 GYRKLFDETLPAVMGRLIEDQSPEAMIDAAVTYNIFAEGVLAETGYWFFHEALSSANLFP 185
Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKE 256
G + + RDE H+ FG +I ++ ENP L E
Sbjct: 186 GFISGIRNVKRDEGRHIGFGTFLIQRLISENPELELFE 223
>gi|289606667|emb|CBI61081.1| unnamed protein product [Sordaria macrospora]
Length = 59
Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
Q P +Y WA++ + HWMP EVP+ +D W LT ER ++ +
Sbjct: 7 RKQYKPFEYPWAFDFWKRQQQIHWMPEEVPLGEDCRDWAQ--KLTPHERNLLTQI 59
>gi|213159370|ref|YP_002321413.1| rr2 [Oryctes rhinoceros virus]
gi|202073556|gb|ACH96232.1| rr2 [Oryctes rhinoceros virus]
Length = 400
Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/306 (15%), Positives = 97/306 (31%), Gaps = 32/306 (10%)
Query: 10 IQAGEKRVNVDDKRMLNAR--SDVNQ-LLPL--KYGWAWEKYLSACNNHWMPTEVPMQDD 64
I + + +L+ NQ L P K+ ++ +L + W E D
Sbjct: 22 IDMDTNESTLPIEDILDPDNLKHRNQTLYPPARKFKDTYDLWLKHQSCFWSVHENDPSVD 81
Query: 65 LALWKSKNGLTDDER-LMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
+++ +T E ++ +G A +S+V + I + +++ E + Q
Sbjct: 82 RDRFET---MTPKEFQEILLCTVGCIAIGDSIVLDRIANGLKERVTSIELKAMFSDQEAR 138
Query: 124 EAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQ 183
E +H + ++ S K + T D
Sbjct: 139 EFIHKKMYSNMLDVSHRA--------NYYRSEEFKNEYM---------SVLETLADKYDI 181
Query: 184 EFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
++Q F ++ E + F F I + + +MRDE +H
Sbjct: 182 GYVQVQMFFIMMCEIILFTPMFQTICYAACKGYCPKLCDLNLLVMRDEYIHYENARLQSF 241
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ K + ++F + E TL A G N E++ + + +
Sbjct: 242 KFKTKLD----RKFARTVLAEFSELTLQLFAKIIGDYDDGV--YNFKHVERHFKHVVHGF 295
Query: 304 CHQIGL 309
+ GL
Sbjct: 296 MSENGL 301
>gi|196040733|ref|ZP_03108032.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
NVH0597-99]
gi|206977638|ref|ZP_03238531.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
H3081.97]
gi|217958931|ref|YP_002337479.1| ribonucleoside-diphosphate reductase, subunit beta [Bacillus cereus
AH187]
gi|222095088|ref|YP_002529148.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
Q1]
gi|229138142|ref|ZP_04266740.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
BDRD-ST26]
gi|229195652|ref|ZP_04322418.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
m1293]
gi|196028523|gb|EDX67131.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
NVH0597-99]
gi|206744211|gb|EDZ55625.1| ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
H3081.97]
gi|217064629|gb|ACJ78879.1| ribonucleoside-diphosphate reductase, subunit beta [Bacillus cereus
AH187]
gi|221239146|gb|ACM11856.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
Q1]
gi|228587901|gb|EEK45953.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
m1293]
gi|228645487|gb|EEL01721.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
BDRD-ST26]
Length = 133
Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
+DES+H F + QI E +E Q++++ +L E +E+AY E +GL
Sbjct: 4 KDESIHGVFVGILAQQIFAELSAEDQQEVQKETQELLMELYEIEMAYTEEIY--TSIGL- 60
Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
+++++ AN+ +GLEP F+ E NP ++ + K +FF + Y +
Sbjct: 61 VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKAT 119
Query: 348 ELK 350
++
Sbjct: 120 NVE 122
>gi|228957728|ref|ZP_04119472.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228801971|gb|EEM48844.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 133
Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
+DES+H F + QI E +E Q++++ +L E +E+AY E +GL
Sbjct: 4 KDESIHGVFVGILAQQIFAELSTEEQQEVQKETQELLMELYEIEMAYTEEIY--TSIGL- 60
Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
+++++ AN+ +GLEP F+ E NP ++ + K +FF + Y +
Sbjct: 61 VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKAT 119
Query: 348 ELK 350
++
Sbjct: 120 NVE 122
>gi|206968346|ref|ZP_03229302.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
AH1134]
gi|228951834|ref|ZP_04113932.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|229069005|ref|ZP_04202298.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
F65185]
gi|206737266|gb|EDZ54413.1| ribonucleoside-diphosphate reductase, beta subunit [Bacillus cereus
AH1134]
gi|228714117|gb|EEL65999.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
F65185]
gi|228807757|gb|EEM54278.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus
thuringiensis serovar kurstaki str. T03a001]
Length = 133
Score = 65.6 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
+DES+H F + QI E +E Q++++ +L E +E+AY E +GL
Sbjct: 4 KDESIHGVFVGILAQQIFAELSVEEQQEVQKETQELLMELYEIEMAYTEEIY--TSIGL- 60
Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
+++++ AN+ +GLEP F+ E NP ++ + K +FF + Y +
Sbjct: 61 VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKAT 119
Query: 348 ELK 350
++
Sbjct: 120 NVE 122
>gi|229172094|ref|ZP_04299659.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
MM3]
gi|228611437|gb|EEK68694.1| Ribonucleoside-diphosphate reductase subunit beta [Bacillus cereus
MM3]
Length = 133
Score = 65.2 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 229 RDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLN 288
+DES+H F + Q+ +E +E Q++++ +L E +E+AY E +GL
Sbjct: 4 KDESIHGVFVGILAQQLFVELSAEDQQEVQKETQELLMELYEIEMAYTEEIY--TSIGL- 60
Query: 289 APSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347
+++++ AN+ +GLEP F+ E NP ++ + K +FF + Y +
Sbjct: 61 VEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIV-LNGLRTDTKNHDFFSVKGNGYVKAT 119
Query: 348 ELK 350
++
Sbjct: 120 NVE 122
>gi|219556030|ref|ZP_03535106.1| ribonucleotide-diphosphate reductase subunit beta [Mycobacterium
tuberculosis T17]
gi|289568136|ref|ZP_06448363.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis T17]
gi|289541889|gb|EFD45538.1| ribonucleoside-diphosphate reductase subunit beta nrdB
[Mycobacterium tuberculosis T17]
Length = 210
Score = 65.2 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 39/190 (20%), Positives = 65/190 (34%), Gaps = 13/190 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVAN--NIVLAIYR 106
W P ++ D A W+ L+DDER R F + E V ++ R
Sbjct: 27 GNAKFWDPADIDFTRDRADWE---KLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMR 83
Query: 107 HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYT 166
YL + AFEEA H+ F+ + ++G+ E + + +
Sbjct: 84 AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED-------LHRYLDDLPAYRQIFY 136
Query: 167 QTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL-SLGRANKMVGIAEQYQ 225
L + ++ + + EGM TG+ S+ A G+ E +
Sbjct: 137 AELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHRSVWNAQSFPGMQELVR 196
Query: 226 YIMRDESLHL 235
I DE
Sbjct: 197 RIGDDERRTW 206
>gi|323508655|dbj|BAJ77221.1| cgd6_700 [Cryptosporidium parvum]
Length = 285
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/276 (12%), Positives = 82/276 (29%), Gaps = 28/276 (10%)
Query: 65 LALWKSKNGLTDDERLMIKRNLGFFASSE--SLVANNIVLAIYRHLSNPECRQYLLRQAF 122
+ + + I+ + L + + + PE R Y
Sbjct: 1 MEDKTKLMNMDEKLLDYIEMAFAKRIYIDNTCLDTVLLTCELLGQVQVPEARGYFSFTMC 60
Query: 123 EEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA-------KANWALQYTQTLSSPSFT 175
E ++ F + + ++ ++ K + + L+
Sbjct: 61 MENIYKELFMNYVEMIRKNKEKIERTDEVEKKDENNLNSKISKEEYEYNLEKKLNELEDF 120
Query: 176 TGTKD------ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRAN-----KMVGIAEQY 224
T K+ + + ++YV+ + ++ + LS N + +
Sbjct: 121 TKMKELVGNFYDEDTLFSEKLIYYVIIKKIFSSSIHLLRLSFSMRNISESELPTQLCDGL 180
Query: 225 QYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGF 284
I RDE + F + + + TK + +L +A +LE + +
Sbjct: 181 DRIRRDEQYQVEFCLSIAK-------SMKTKPSNDQVVNLLEQAIMLEKNFIFSIVDPQV 233
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
+ + ++ F A+ + F + NPF
Sbjct: 234 LQIEREDIVAFLLFNADEILVDLKYPRQFNVS-NPF 268
>gi|213024643|ref|ZP_03339090.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 119
Score = 64.8 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAF 122
L + E+ + NL + +S+ + +A+ +S PE ++ AF
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAF 114
>gi|70607921|ref|YP_256791.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
acidocaldarius DSM 639]
gi|68568569|gb|AAY81498.1| ribonucleotide reductase, small chain [Sulfolobus acidocaldarius
DSM 639]
Length = 330
Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/258 (15%), Positives = 80/258 (31%), Gaps = 17/258 (6%)
Query: 12 AGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSK 71
E ++ + + D N P++ + W E+ D WK
Sbjct: 10 TKEGKILHNKFKSTVEGLDWNT-FPMR------LFEIGEKFRWTAYELDFSKDREDWKKL 62
Query: 72 NGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTF 131
+ +I + L E YL + A +EA H+ F
Sbjct: 63 KPSDRTQNKIISSYFL-AGEECVARDILPLANAMEELGLIEEALYLTQFARDEANHTVAF 121
Query: 132 QYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFV 191
+ S+G EG + + + + + + + ++ +
Sbjct: 122 RKWFESVGETEG-------IYDFTYKNEPYRRLFYEIIPTDMRRLYNDPSPENIVRAVVS 174
Query: 192 FYVVFEGMWFYTGFAQI--LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIEN 249
+ V EG+ TG+ + G+ + + I RDE+ H++FG V + +
Sbjct: 175 YNFVAEGILAETGYYGYVKGYEKILPALPGLYKMVKLITRDEARHISFGAYVAALMISMH 234
Query: 250 PHLWTKEFQQKSRTMLHE 267
EF + + E
Sbjct: 235 GDSVLNEFNRYFGQLTQE 252
>gi|312865062|ref|ZP_07725290.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
downei F0415]
gi|311099173|gb|EFQ57389.1| ribonucleoside-diphosphate reductase, beta subunit [Streptococcus
downei F0415]
Length = 318
Score = 64.4 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 21/265 (7%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ A + W+ T +P+++D W+ GL+ E+ + R+L A + + I
Sbjct: 25 WERATSLFWLDTRIPIEEDKPKWE---GLSKKEQDQLNRSLLLLAQEATYQSIEAGQIIR 81
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
+ + L F E V + + I+ + ++ + L+
Sbjct: 82 NSQRSQQEIAILNNLQFTEMVATKAYNRILRVFNDERD--LQVWLDWVDGQEFLQKRLKT 139
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
+ + + + EG+ Y+ A L L ++ + +
Sbjct: 140 IDAIYNSKDPLAKR-----------FAAICLEGLMNYSLLAYPLYLWQSKGFTSLGLMLE 188
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM-PKGF 284
++R+ESLH + + + E K+F+ +R + + E +
Sbjct: 189 MVIRNESLHCYYLGHKVKLLLTEVDQDEAKDFENWARDFVDKLVQQEEDLIEDYFLLDDA 248
Query: 285 VGLNAPSCEQYMQFIANRRCHQIGL 309
L Q AN GL
Sbjct: 249 KSLAKDLLHQ----EANHILENFGL 269
>gi|70946075|ref|XP_742789.1| ribonucleotide reductase small subunit [Plasmodium chabaudi
chabaudi]
gi|56521965|emb|CAH76799.1| ribonucleotide reductase small subunit, putative [Plasmodium
chabaudi chabaudi]
Length = 211
Score = 64.0 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/181 (17%), Positives = 68/181 (37%), Gaps = 13/181 (7%)
Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-AN 215
+ L+Y ++ +A+ F L + Y+ + F G + + S +
Sbjct: 20 EIIDQVLKYESVFKKQNWLYNEFEANIPFYNKLILLYIS--KVLFNGGLSIVSSYCKENG 77
Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAY 275
+ + Y I RDE L +F + N + + + + A LE +
Sbjct: 78 ILPCLTSVYDKIQRDEYLQGDFSVMCCNHLNNKLKY-------ENVLDYFKTAVDLEYNF 130
Query: 276 AHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW--MSEVIDLKKEK 333
E + + + +Q++Q++A+ + + ++ PF W S++I + K
Sbjct: 131 CVEMLDFDSLKITKDQVKQFLQYLADTMLVNLKYSKHYN-SKYPFTWKEFSKIIVSENAK 189
Query: 334 N 334
N
Sbjct: 190 N 190
>gi|171779598|ref|ZP_02920554.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281700|gb|EDT47134.1| hypothetical protein STRINF_01435 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 138
Score = 64.0 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ + WE W+ T +P+ +DL W+ L+D E+ ++ + G
Sbjct: 9 NWNEIEDVIDKSTWE---KLTEQFWLDTRIPLSNDLDDWR---KLSDQEKDLVGKVFGGL 62
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFN 147
+++ + + V AI + P L F E+VH+ ++ I ++L E+F
Sbjct: 63 TLLDTMQSESGVEAIRADVRTPHEEAVLNNIQFMESVHAKSYSSIFSTLNTKSEIEEIFE 122
Query: 148 MYREVPSITAKANWAL 163
+ K
Sbjct: 123 WTNNNEYLQKKDQNHQ 138
>gi|171779596|ref|ZP_02920552.1| hypothetical protein STRINF_01433 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281698|gb|EDT47132.1| hypothetical protein STRINF_01433 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 144
Score = 64.0 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 9/141 (6%)
Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
M IAE + I+RDES+H + E + + +L++ E Y
Sbjct: 1 MANIAEIIKLIIRDESVHGTYIGYKFQLGFNELSEKEQDDLRDWMYDLLYQLYENEENYT 60
Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEK 333
+ VG ++++ AN+ +G +PLF NP M+ +
Sbjct: 61 KTLYDQ--VGWT-EEVLTFLRYNANKALMNLGQDPLFPDTANDVNPIV-MNGISTGTSNH 116
Query: 334 NFFETRVTEYQQGA--ELKWD 352
+FF Y G+ ++ D
Sbjct: 117 DFFSQVGNGYLLGSVEAMQDD 137
>gi|295398338|ref|ZP_06808380.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
viridans ATCC 11563]
gi|294973477|gb|EFG49262.1| ribonucleotide-diphosphate reductase subunit beta [Aerococcus
viridans ATCC 11563]
Length = 332
Score = 62.5 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 44/271 (16%), Positives = 89/271 (32%), Gaps = 25/271 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ A + W+ T VP+++D + W L E+ + R L + + +N + I
Sbjct: 40 WERATSLFWLDTRVPIENDRSKW---ANLQLQEQEQLNRLLILLTNIATYQSNELGEIIR 96
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD--EGELFNMYREVPSITAKANWAL 163
+ + + F E VH+ + I++ D + F+ P +
Sbjct: 97 DSARSQQEIAIINNFQFTEMVHTKAYNRILSIFNQDIGSQKAFDWVDTNPQVRDYIEKIH 156
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQ 223
Q+ + EG+ YT + + L + +
Sbjct: 157 MTYQSADPLKKR---------------FMAICVEGILNYTYLSYLFELWLDRNFLNLGSM 201
Query: 224 YQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKG 283
+ I+R+ESLH + +N + E +F+ ++ + +L G
Sbjct: 202 LKMIVRNESLHCYYLNYKVNLLLKEASSKQVAQFKSWGMEIVDDFVVLADQLIDTFYTIG 261
Query: 284 FVG-LNAPSCEQYMQFIANRRCHQIGLEPLF 313
+ Q AN IGL ++
Sbjct: 262 SSKTVAFNLVMQ----EANHILAGIGLNEIY 288
>gi|289803661|ref|ZP_06534290.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 106
Score = 62.5 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQ 132
+++ ++ P L +F EAVH+ ++
Sbjct: 67 DTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYS 106
>gi|262204313|ref|YP_003275521.1| ribonucleotide reductase subunit beta-like protein [Gordonia
bronchialis DSM 43247]
gi|262087660|gb|ACY23628.1| Ribonucleotide reductase beta subunit-like protein [Gordonia
bronchialis DSM 43247]
Length = 324
Score = 62.5 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 44/268 (16%), Positives = 89/268 (33%), Gaps = 15/268 (5%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
+++ W P + D W+ + DDER + + + E V ++
Sbjct: 36 HLFVTGNARFWDPRGIDFSTDALDWRE---MRDDERRFVTYLVAQICAGEEAVTRDVQPF 92
Query: 104 IYRHLSN--PECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
++ YL + AFE+A H+ F+ + + GL + P + +
Sbjct: 93 GQAAAADGRLGDEMYLSQVAFEKAKHTEVFRLWMDAAGLVDD-------LNPVLDTNPFY 145
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANKMVGI 220
+ L + T + + ++ + F+ V G TG + + + G+
Sbjct: 146 RQLIVEELPAALRRMETDPSPENQIRAVITFHQVIGGTLACTGHRMLQRICSAYGILPGM 205
Query: 221 AEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETM 280
+ I DE H+ +G ++ + L + S M + I +
Sbjct: 206 RTLIRMISTDERRHMAWGTYTCRRLVAADDALADVAVTRMSELMPLALGM--INWLDGEF 263
Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIG 308
L+ Y + RR IG
Sbjct: 264 APLPFDLSTAEFIAYAADRSRRRLDAIG 291
>gi|171779438|ref|ZP_02920402.1| hypothetical protein STRINF_01283 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282055|gb|EDT47486.1| hypothetical protein STRINF_01283 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 317
Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/276 (14%), Positives = 93/276 (33%), Gaps = 19/276 (6%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ A + W+ T +P+++D W L +E+ +KR L + + + + +
Sbjct: 25 WERATSLFWLDTRIPIENDFTNW---VKLNLEEQEQLKRLLILLTNLSTNQSIEVGEIVR 81
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
+ + L F E V++ + I+ + + ++ + L+Y
Sbjct: 82 NGKCSQQEVAILNNIQFIEMVNTKAYNRILLTFDKEIN-----LKKSFEWVDNESRVLEY 136
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
+++ + + EG+ Y A + L + + +
Sbjct: 137 LNDINTVYRESSLVKKR--------FIALCIEGLLNYAYLAYLFELWINKEFNNLGSMLE 188
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I+R+ESLH + I + E+ + F+ ++ L I +
Sbjct: 189 MIIRNESLHCFYFSHKIKLLLKESDLQEVERFKAWGYETVNHFVKLGINLIGDFYYLKES 248
Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
+ A + + AN IGL+ F +
Sbjct: 249 KIIAKNL---ILQEANNILMGIGLKEQFNFNAEVLK 281
>gi|56410463|ref|YP_145837.1| ribonucleotide-diphosphate reductase subunit beta [Geobacillus
kaustophilus HTA426]
gi|56378360|dbj|BAD74269.1| ribonuleotide reductase small subunit [Geobacillus kaustophilus
HTA426]
Length = 292
Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 20/211 (9%)
Query: 42 AWEKYLSACNN-HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI 100
AW+ Y A W P E+ + +D +K L + R + F ++E N+
Sbjct: 32 AWKLYQMAIRFGTWNPQEIDLSEDKKHFKQ---LDEQRRAYLIHFCTGFWNAE----ENV 84
Query: 101 VLAIYRHLSNP---ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
L + E + +L Q +E H+ F + + E+ + ++
Sbjct: 85 ALKFCPWIMIAPSIEQQAFLSTQLVDEFKHTEFFIRYFAEVLQTDREVKVLNLVHDTLDE 144
Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF-AQILSLGRANK 216
+A L G ++ + L+ L + V EG+ G+ G+
Sbjct: 145 RARQLLSVLDK--------GPEEREIAMLEGLVHYQGVIEGIQAMVGYEVFEAVYGQYGL 196
Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKI 247
G+ E ++ I RDE H+ +G+ ++ +
Sbjct: 197 FPGLKEGFKQIKRDEGRHVGYGLRMMKYLSK 227
>gi|121729792|ref|ZP_01682228.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|121628467|gb|EAX60957.1| conserved hypothetical protein [Vibrio cholerae V52]
Length = 107
Score = 61.3 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+K+ + + M + +V + KY + + W P EV + D +
Sbjct: 8 QKKNDQLKEPMFLGQPVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSSDRIDY---G 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECR 114
L D E+ + NL + +S+ + +A+ +S PE
Sbjct: 65 KLPDHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSLPELE 106
>gi|256378482|ref|YP_003102142.1| ribonucleotide reductase [Actinosynnema mirum DSM 43827]
gi|255922785|gb|ACU38296.1| ribonucleotide reductase [Actinosynnema mirum DSM 43827]
Length = 320
Score = 61.3 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/276 (16%), Positives = 88/276 (31%), Gaps = 17/276 (6%)
Query: 38 KYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVA 97
K + Y + W ++ D W++ +TD ER F +E
Sbjct: 38 KLPEYIDLYKRYFTHRWNAYDLDFSQDAVDWRT--KMTDVERKAFTEIAAAFHHAER--Q 93
Query: 98 NNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITA 157
+ L I+ + E + YL Q +EA H+ F + G+
Sbjct: 94 VEVELPIFMLTGSEEAKMYLCTQLEDEARHTLFFDRFYREVVGLPGDSVEELLASSFPHV 153
Query: 158 KANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR-ANK 216
+ + + + ++ +++ EG+ T L+ R
Sbjct: 154 PETFVGAFGLLSYLADDLRVDPENPAKRVRYATAYFMWIEGVLALTIMKLTLTYCRTKGY 213
Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276
+ G + RDE+ H+ FG+ + E+P + +HE E+A
Sbjct: 214 LPGYYTGFIASCRDEARHVQFGMRFLRDSVQEDP---------RLLHEIHETLRTELAMN 264
Query: 277 HET---MPKGFVGLNAPSCEQYMQFIANRRCHQIGL 309
P +G + +M N + +G+
Sbjct: 265 GGASVPAPLEPLGFSEEEVVHFMIRQVNNKLSDVGI 300
>gi|167837964|ref|ZP_02464823.1| ribonucleotide-diphosphate reductase subunit beta [Burkholderia
thailandensis MSMB43]
Length = 70
Score = 60.2 bits (144), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 14 EKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSA 49
E RVNV DKR++N ++DVNQL+P KY WAWEKYL+
Sbjct: 35 EARVNVADKRIINGKTDVNQLVPFKYKWAWEKYLAG 70
>gi|147800139|emb|CAN68817.1| hypothetical protein VITISV_036653 [Vitis vinifera]
Length = 924
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 305 HQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
+ E + ENPF WM E I L+ NFF+ R+ +YQ+ + +
Sbjct: 745 VALXYERKYNV-ENPFDWM-EFISLQGNANFFQRRMGDYQKASIMS 788
>gi|169838797|ref|ZP_02871985.1| ribonucleotide-diphosphate reductase subunit beta [candidate
division TM7 single-cell isolate TM7a]
Length = 71
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLG 87
D QL P++Y WA+ Y A N W P EV + DLA +K L R+++K+ L
Sbjct: 16 DGLQLKPVRYEWAYRLYNQAVANTWFPNEVQLVQDLADFK---NLQKTRRMLLKQLLA 70
>gi|66957902|gb|AAY59065.1| ribonucleotide reductase small subunit [Tortoise herpesvirus]
Length = 215
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 14/201 (6%)
Query: 49 ACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHL 108
A N W E DD+ + + L + + F ++++ V N + + +
Sbjct: 20 AIKNRWAEDEFMYTDDIKDF---SRLDPEALDFYRFIFTFLSAADDKVNIN-LDQLKQLF 75
Query: 109 SNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQT 168
+ Y Q E VHS T+ + +L ++ + Y E +
Sbjct: 76 PQKDVHHYYATQEDIECVHSRTYAGVQLALFNNDDDARRRYIEANVSHPTIETKFDWLN- 134
Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
TK + E + + ++ ++ EG++F FA I L + I
Sbjct: 135 ---------TKIMENESVPEKYLLMILVEGIFFVASFASIAYLRNHGGFNSVCRSNDLIS 185
Query: 229 RDESLHLNFGIDVINQIKIEN 249
RDE++H + N ++
Sbjct: 186 RDEAIHTQASCCIFNNYLKDH 206
>gi|270614678|ref|ZP_06221723.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
influenzae HK1212]
gi|270317993|gb|EFA29282.1| ribonucleoside-diphosphate reductase, beta subunit [Haemophilus
influenzae HK1212]
Length = 103
Score = 59.0 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D +
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64
Query: 73 GLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
L + E+ + NL + +S+ + +A+ +S P
Sbjct: 65 ALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSIP 103
>gi|221309908|ref|ZP_03591755.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. 168]
gi|221314231|ref|ZP_03596036.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. NCIB 3610]
gi|221319154|ref|ZP_03600448.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. JH642]
gi|221323427|ref|ZP_03604721.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
subtilis subsp. subtilis str. SMY]
Length = 123
Score = 58.6 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 240 DVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFI 299
+ +I + KE + +L E E+ Y + + VGL AP ++++++
Sbjct: 1 MLAQEIYKKQTPQKQKELYAWALNLLQELYENELEYTEDVYDQ--VGL-APDVKKFIRYN 57
Query: 300 ANRRCHQIGLEPLFKYTE-NPFPWMSEVIDLKKE-KNFFETRVTEYQQGAE 348
AN+ + +G + F+ + NP + ++ K + +FF T+ Y++
Sbjct: 58 ANKALNNLGFDHWFEEEDVNPI--VINGLNTKTKSHDFFSTKGNGYKKATV 106
>gi|9631114|ref|NP_047784.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
MNPV]
gi|3822382|gb|AAC70333.1| ribonucleotide reductase small subunit homolog [Lymantria dispar
MNPV]
Length = 359
Score = 58.6 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/219 (17%), Positives = 70/219 (31%), Gaps = 19/219 (8%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
+ Q+ P KYG +W Y N+W E DD+ + L + + R+
Sbjct: 28 GPTGNALQIWPPKYGLSWSFYKDHQANYWSAEEHDPLDDINGF---VKLPREWQNAALRS 84
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
A + V I + + E Q E VH + ++ +
Sbjct: 85 FAVLAIGDDAVMKFIDESGLEWEESTEW--LFKDQGARETVHKIVYNKMLQLANHSRDYV 142
Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
N + ++ Y + + F + + A + E F F
Sbjct: 143 MNSFTSDDFVS--------YMLSGETLEFRSDLRKACFLIKM------IFCERYLFAVPF 188
Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
I LG N + + +M+DE LH + ++N
Sbjct: 189 LIINILGETNAINTCVKINMQVMKDEHLHYLHAVALLND 227
>gi|146322251|ref|YP_001174720.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis]
gi|145968742|gb|ABQ00020.1| putative ribonucleotide reductase subunit beta [Lactococcus lactis]
Length = 317
Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/276 (13%), Positives = 93/276 (33%), Gaps = 19/276 (6%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ A + W+ T +P+++D W L +E+ +K L + + + + +
Sbjct: 25 WERATSLFWLDTRIPIENDFTNW---IKLNLEEQGQLKCLLILLTNLSTNQSIEVGEIVR 81
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
+ + L F E V++ + I+ + + ++ W
Sbjct: 82 NGKCSQQEVAILNNIQFIEMVNTKAYNRILLTFDKE-----------INLEKSFEWVDND 130
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
++ L + + + EG+ Y + + L + + +
Sbjct: 131 SRVLEYLNDINTVYRESSLIKKRFI--ALCVEGLLNYAYLSHLFELWINKEFNNLGTMLE 188
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I+R+ESLH + + + E+ + F+ S ++ L + + ++
Sbjct: 189 MIIRNESLHCFYFSHKVKLLLKESDPKEVERFKAWSYETVNHFVKLGLNIIDDFY---YL 245
Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
+ + + AN IGL+ F + +
Sbjct: 246 KESKKIAKNLILQEANNILMGIGLKEQFGFNDEVLK 281
>gi|47200896|emb|CAF87761.1| unnamed protein product [Tetraodon nigroviridis]
Length = 441
Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/214 (14%), Positives = 64/214 (29%), Gaps = 19/214 (8%)
Query: 101 VLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE---LFNMYREVPSITA 157
V + + E R + Q E +HS + +I + + E LFN +P +
Sbjct: 234 VERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKEPSEREYLFNAIETLPCVKK 293
Query: 158 KANWALQYTQTLSSPSF----------TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQ 207
KA+WAL + + + T + + G G
Sbjct: 294 KADWALNWIGNQKASTVSARPTLRAAPTRRRPHSLPVLCSRRARGGLCRRGGNLLLGLLC 353
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267
L + + + R + ++ P T +
Sbjct: 354 RHLLAEEARPDA---RPDLLQR-ADQQRRGSALRLRLSDVQAPAAQTVGTDGRRHHQERR 409
Query: 268 ATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIAN 301
+ +P +G+N ++Y++F+A+
Sbjct: 410 GDRAGVP--DRALPVKLIGMNCQLMKRYIEFVAD 441
>gi|9629972|ref|NP_046190.1| ribonucleotide reductase small subunit [Orgyia pseudotsugata MNPV]
gi|1911280|gb|AAC59033.1| ribonucleotide reductase small subunit [Orgyia pseudotsugata MNPV]
Length = 349
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/259 (16%), Positives = 81/259 (31%), Gaps = 20/259 (7%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ Q+ P KYG ++ Y N+W E DD+ + L + + + R+
Sbjct: 36 NALQIWPPKYGLSYAFYKDHQANYWSAEEHDPLDDINGF---VKLPREWQNAVLRSFAVL 92
Query: 90 ASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMY 149
A + V I + + + E Q E VH + ++ + + +
Sbjct: 93 AIGDDAVMKFIDESGLKWEESTEW--LFKDQGARETVHKIVYNKMLQLANYSTDYVMSSF 150
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
++ L + + FL + E F F I
Sbjct: 151 TSDDFVSYM----------LGGEALEFYSDHRKACFLIKMI----FCERYLFAVPFLIIN 196
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE-NPHLWTKEFQQKSRTMLHEA 268
LG N + + +M+DE +H + ++N IK N + F +
Sbjct: 197 ILGETNAINTCVKINMQVMKDEHVHYLHAVALLNDIKESANTTAINELFCHIGDQFVKIV 256
Query: 269 TLLEIAYAHETMPKGFVGL 287
+ + K GL
Sbjct: 257 EPMVAKIGLDLTEKQLAGL 275
>gi|328480216|gb|EGF49142.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
rhamnosus MTCC 5462]
Length = 115
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ W+ T +P+ +DL W+S L+ DE+ ++ G ++L + + + ++
Sbjct: 22 WEKLTEQFWLDTRIPLSNDLDDWRS---LSPDEQWVVGHVFGGLTLLDTLQSQDGMASLR 78
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD 141
+++ + L F E+VH+ ++ I ++L
Sbjct: 79 QNIRTQQETAVLNNIQFMESVHAKSYSSIFSTLNTP 114
>gi|293570202|ref|ZP_06681272.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E980]
gi|291609715|gb|EFF38975.1| ribonucleoside-diphosphate reductase, beta subunit [Enterococcus
faecium E980]
Length = 317
Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/276 (13%), Positives = 93/276 (33%), Gaps = 19/276 (6%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+ A + W+ T +P+++D W L +E+ +K L + + + + +
Sbjct: 25 WERATSLFWLDTRIPIENDFTNW---IKLNLEEQGQLKCLLILLTNLSTNQSIEVGEIVR 81
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
+ + L F E V++ + I+ + + ++ W
Sbjct: 82 NGKCSQQEVAILNNIQFIEMVNTKAYNRILLTFDKE-----------INLEKSFEWVDND 130
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
++ L + + + EG+ Y + + L + + +
Sbjct: 131 SRVLEYLNDINTVYRESSLIKKRFI--ALCVEGLLNYAYLSHLFELWINKEFNNLGTMLE 188
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I+R+ESLH + + + E+ + F+ S ++ L + + ++
Sbjct: 189 MIIRNESLHCFYFSHKVKLLLKESDPKEVERFKAWSYETVNHFVKLGLNIIGDFY---YL 245
Query: 286 GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFP 321
+ + + AN IGL+ F + +
Sbjct: 246 KESKKIAKNLILQEANNILMGIGLKEQFSFNDEVLK 281
>gi|70607929|ref|YP_256799.1| ribonucleotide-diphosphate reductase subunit beta [Sulfolobus
acidocaldarius DSM 639]
gi|68568577|gb|AAY81506.1| hypothetical protein Saci_2220 [Sulfolobus acidocaldarius DSM 639]
Length = 345
Score = 57.1 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/219 (19%), Positives = 87/219 (39%), Gaps = 14/219 (6%)
Query: 45 KYLSACNNHWMPTEVP--MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
+ + W P + +Q D W++ +++ ER + + F++ E V+ +
Sbjct: 34 LWAKSNELFWSPLQFKELIQQDKQDWET---MSESEREISEYIATAFSAGEEAVSRYLAE 90
Query: 103 AIYR--HLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN 160
+ L E +L + EE H+ F+ + S+G+D+ PS
Sbjct: 91 LVIALDELGYTEEVLFLNQFQQEETRHTDAFRRWMDSIGMDKDTEKWTTEINPS------ 144
Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK-MVG 219
+ + L S ++ + + L+ + EG+ TGF ++ + + G
Sbjct: 145 YYELFYVALPSAAYGVKANPSPESILRFTATYMFSIEGIAAETGFYFWRTMWERGRHLKG 204
Query: 220 IAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQ 258
I E + + DES HL FG + + E+ L+ K +
Sbjct: 205 IYEIVKRVAADESRHLAFGTYLTTMLIGEDQSLYDKFLE 243
>gi|294669616|ref|ZP_06734683.1| hypothetical protein NEIELOOT_01517 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308529|gb|EFE49772.1| hypothetical protein NEIELOOT_01517 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 81
Score = 57.1 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY-TENPFPWMSEVIDLKK 331
+GLN QY+++I N R +GL F+ T+NP PW++ +
Sbjct: 1 MIGLNKEILAQYVEYITNLRMQAVGLPAGFEGATQNPIPWINAWLSSDN 49
>gi|296086890|emb|CBI33063.3| unnamed protein product [Vitis vinifera]
Length = 75
Score = 56.3 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDL 329
+NA QY++F+A+ IG E + ENPF WM E I L
Sbjct: 1 MNATLMSQYIKFVADHLLVAIGYERKYNV-ENPFDWM-EFISL 41
>gi|213420352|ref|ZP_03353418.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 88
Score = 56.3 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 281 PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+GLN QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 6 DGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 52
>gi|213855386|ref|ZP_03383626.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. M223]
Length = 80
Score = 56.3 bits (134), Expect = 7e-06, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 284 FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+GLN QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 1 MIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 44
>gi|213581345|ref|ZP_03363171.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
Length = 90
Score = 56.3 bits (134), Expect = 8e-06, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 275 YAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
+A G +GLN QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 1 WADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 54
>gi|284176152|ref|YP_003406429.1| Ribonucleotide reductase beta subunit-like protein [Haloterrigena
turkmenica DSM 5511]
gi|284017809|gb|ADB63756.1| Ribonucleotide reductase beta subunit-like protein [Haloterrigena
turkmenica DSM 5511]
Length = 302
Score = 55.9 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 16/208 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y +A HW P E+ ++ D + L D +K++L F + E V ++
Sbjct: 22 YYRNAVEKHWDPHEIDLEADR---EGATDLPDPAFEGLKQSLALFGAGEESVTEDLAPLA 78
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQ 164
L + E + ++ Q +EE+ H+ F + E E P+ W +
Sbjct: 79 V-VLEDIEDQLFITTQLYEESKHTDFFDRYWREVIHAEEERRGQELSSPADEK---WFNE 134
Query: 165 YTQTL----SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKM--- 217
L +D + + +++ EG+ TG+ + +
Sbjct: 135 PYDELFERNERAMVQLLEEDTPKNRAKAHCHYHLTIEGILAQTGYYGLTLAYGEQEPDLP 194
Query: 218 --VGIAEQYQYIMRDESLHLNFGIDVIN 243
G+ E + + DE H+ FG+ +
Sbjct: 195 DLPGLVEGLKLVRSDEGRHVGFGMAQLK 222
>gi|60416882|emb|CAD71202.1| ribonucleoside-diphosphate reductase small subunit [Bacillus
subtilis]
Length = 140
Score = 55.9 bits (133), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L +E+ + L ++ N + I
Sbjct: 26 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPII 82
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDEG--ELFNMYREVPSITAK 158
H+ + + L A E VH+ ++ I +L E E+F + + K
Sbjct: 83 AEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEQINEVFEWVKNNRFLQKK 139
>gi|281181724|dbj|BAI58041.1| putative ribonucleoside-diphosphate reductase [Edwardsiella tarda]
Length = 169
Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 16/164 (9%)
Query: 87 GFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELF 146
+ +S+ + +A+ +S PE ++ +F E +HS ++ +II ++ D +F
Sbjct: 2 RYQTLLDSIQGRSPNVALLPLISIPELETWVETWSFSETIHSRSYTHIIRNIVTDPSLVF 61
Query: 147 NMYREVPSITAKANWALQYTQTLSSPS-FTTGTKDADQEFL---------------QDLF 190
+ I +A Y L + + + +
Sbjct: 62 DDIVSNEEILKRARDISAYYDDLIETTGYYHLLGEGTHQINGKPVTVSLRELKKKLYLCL 121
Query: 191 VFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234
+ E + FY FA + M G A+ + I RDE+LH
Sbjct: 122 MSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALH 165
>gi|328553050|gb|AEB23542.1| ribonucleotide-diphosphate reductase subunit beta [Bacillus
amyloliquefaciens TA208]
Length = 93
Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 264 MLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE-NPFPW 322
ML E E+ Y + + VGL AP ++++++ AN+ + +G + F+ + NP
Sbjct: 1 MLQELYENELEYTEDVYDQ--VGL-APDVKKFIRYNANKALNNLGFDHWFEEEDVNPIV- 56
Query: 323 MSEVIDLKKEKNFFETRVTEYQQGAE 348
++ + K +FF + Y++
Sbjct: 57 INGLSTKTKSHDFFSMKGVGYKKATV 82
>gi|21686785|ref|NP_663285.1| ribonucleotide reductase 2a [Phthorimaea operculella granulovirus]
gi|21637101|gb|AAM70318.1| ribonucleotide reductase 2a [Phthorimaea operculella granulovirus]
Length = 345
Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/227 (14%), Positives = 70/227 (30%), Gaps = 19/227 (8%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
Q+ P Y +W Y NHW E DDL+ ++ +T + + ++ A
Sbjct: 35 QIWPPSYYPSWFYYQQHQANHWFANEHDPLDDLSGFE---KITPAWQNALLQSFAALAIG 91
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
+ V I + + + QA E H + ++ +
Sbjct: 92 DDKVMCLISENELQWEES--TKWMFADQAARETTHKIAYNRMLELARVST--------FF 141
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ T ++ Y + A L E F F I +G
Sbjct: 142 TTDTLTSDEYANYLMDKVDLDVSNVNAKAKFLITMMLC------ERYLFAAPFLIINLMG 195
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
+ + + +M+DE H + V++ +++ + +
Sbjct: 196 ESGFINTCVKINMQVMKDEHSHYAHSVQVLHDSCQNFENIFNELCAK 242
>gi|134303461|ref|YP_001111330.1| ribonucleotide reductase small subunit [Gryllus bimaculatus
nudivirus]
gi|134022847|gb|ABO45396.1| ribonucleotide reductase small subunit [Gryllus bimaculatus
nudivirus]
Length = 371
Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/240 (14%), Positives = 74/240 (30%), Gaps = 25/240 (10%)
Query: 43 WEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVL 102
+ +L W P E+ + D A + ++ I + + + +
Sbjct: 72 YNFWLKQVALAWSPEEISLSKDKATFHRA----PEQLKKISACMLGMLAIGDNIVLQNLS 127
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
+ ++N + RQ E HS + + L ++ +
Sbjct: 128 DVSEIITNNYVLNAISRQEDVEKTHSDFYSRSLDVLNDVGKSVYYKSEHFINNEL----- 182
Query: 163 LQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAE 222
+K L + F ++ E ++F F + LG A
Sbjct: 183 ---------YDIQQFSKKHSTNNLNKIAFFIMICERLYFLPAFVTVAYLGITGYAPHTAL 233
Query: 223 QYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPK 282
+Y+MRDE+LH N ++ + K +Q++ +L+E +
Sbjct: 234 GNRYVMRDENLHYNLWRNISANFE-------YKMNKQEALNILNEFEYILKCTIKNIFKN 286
>gi|6581175|gb|AAF04633.2|AF099142_1 small subunit of ribonucleotide reductase [shrimp white spot
syndrome virus]
Length = 100
Score = 54.0 bits (128), Expect = 4e-05, Method: Composition-based stats.
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 17 VNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDD 64
V+ + + P+ + WE Y W E+ + D
Sbjct: 52 VDTFKHLLTRENPNRFVSRPIVHEDLWEMYKKEVACFWTLEEIDFERD 99
>gi|213585578|ref|ZP_03367404.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
Length = 189
Score = 53.6 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 22/187 (11%)
Query: 110 NPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL 169
PE ++ AF E +HS ++ +II ++ D +F+ I +A Y L
Sbjct: 2 IPELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDEL 61
Query: 170 SS-----------------PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ ++ ++ L + E + FY FA +
Sbjct: 62 IEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFA 120
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEA 268
M G A+ + I RDE+LHL ++N + +++P + +E +Q+ + +A
Sbjct: 121 ERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQA 180
Query: 269 TLLEIAY 275
E +
Sbjct: 181 AQQEKEW 187
>gi|68010653|ref|XP_670832.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56486449|emb|CAH96459.1| hypothetical protein PB000804.01.0 [Plasmodium berghei]
Length = 65
Score = 53.6 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 15 KRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMP 56
++ ++++LN S+ L P+ Y W Y A + W
Sbjct: 24 QKTKESNEKILNKESNRFTLHPIIYPEVWNFYKKAEASFWTA 65
>gi|284046710|ref|YP_003397050.1| sterol-binding domain protein [Conexibacter woesei DSM 14684]
gi|283950931|gb|ADB53675.1| Sterol-binding domain protein [Conexibacter woesei DSM 14684]
Length = 419
Score = 53.3 bits (126), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/233 (13%), Positives = 77/233 (33%), Gaps = 13/233 (5%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
+ Y + ++ W TE+ D W+ + + + +L F
Sbjct: 10 ISYEDLYARWERGN---WRATEIDFTADSEQWQERFDAFERRAALWNYSLFFHGEDAVAD 66
Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSIT 156
+ + E + +L Q +EA H+ F+ + +
Sbjct: 67 NLSPYIDAAPLE---EQKYFLTTQQVDEARHAVFFKRFMHEVCDVGDGTMAGGLAAIQPD 123
Query: 157 AKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG-FAQILSLGRAN 215
+ + L + + + + L +++++ E +G L + +
Sbjct: 124 LTWGFRRVF-DRLDTMADELRRDRSKPKLAAALALYHLIVEATLAQSGQHFITGYLEQRD 182
Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEA 268
+ G + + DE H+ FG+ ++ ++ E+P E ++ +L E
Sbjct: 183 VLPGFYGGMRNVEFDEQRHIGFGVKLLYDLQREDP-----ECKEAVAELLREV 230
>gi|46309416|ref|YP_006306.1| ORF38 [Agrotis segetum granulovirus]
gi|46200633|gb|AAS82700.1| ORF38 [Agrotis segetum granulovirus]
Length = 369
Score = 52.9 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 69/254 (27%), Gaps = 14/254 (5%)
Query: 26 NARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRN 85
N+ + V ++ P Y +W Y N+W TE + L L + + +
Sbjct: 30 NSETLVLKIWPPTYAPSWHYYQLHQANYWSATE---HEPLEDVSGFIKLDSQWQKAVLHS 86
Query: 86 LGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGEL 145
A + V I + Q E +H + ++
Sbjct: 87 FAILAIGDDAVMQFIDENDLEWEECTQW--MFKDQGARETIHKIVYNKMLHLADHS---- 140
Query: 146 FNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGF 205
S+ + S + + + + E F T F
Sbjct: 141 ---SEFTTSMLTSKKYINYILHNNSDLKLQKYKLEDEVMKKAAFLIKMIFCERYLFATPF 197
Query: 206 AQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTML 265
I +G + + +M+DE +H + + +K + E + M
Sbjct: 198 LVINLMGESGFLNNCVRINMQVMKDEHVHYLHAVQLFRDLKPK--SDQIDEINKLFFDMA 255
Query: 266 HEATLLEIAYAHET 279
E + +
Sbjct: 256 QEFVEIVENMIMKI 269
>gi|45259565|dbj|BAD12265.1| p53-inducible ribonucleotide reductase small subunit 2 short form
beta [Homo sapiens]
Length = 66
Score = 52.9 bits (125), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 316 TENPFPWMSEVIDLKKEKNFFETRVTEYQQGAEL 349
ENPF +M E I L+ + NFFE RV+EYQ+ A +
Sbjct: 20 AENPFDFM-ENISLEGKTNFFEKRVSEYQRFAVM 52
>gi|327197769|ref|YP_004301467.1| gp134 [Brochothrix phage A9]
gi|299810369|gb|ADJ53168.1| gp134 [Brochothrix phage A9]
Length = 132
Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 7/106 (6%)
Query: 244 QIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRR 303
+ E E Q + +L++ E+ Y +G A + ++++ N+
Sbjct: 1 MLTREYTQKQRDELQTFAIELLYKLYTNEMKYTEYLY--DEIGWTA-DVKAFVRYNLNKA 57
Query: 304 CHQIGLEPLFKY---TENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
+G++ ++ NP M+ + +FF Y G
Sbjct: 58 LANLGMDAIYPERAQDVNPIV-MTGLSTESSNHDFFSQVGNSYIMG 102
>gi|328861691|gb|EGG10794.1| hypothetical protein MELLADRAFT_93450 [Melampsora larici-populina
98AG31]
Length = 130
Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
L + Y W E+ D+ W+ N L +DE+ IK L F A+S
Sbjct: 51 VLFSITYDE-----------FWTAGEIDPSKDMHNWE--NRLKNDEKHFIKHILAFLATS 97
Query: 93 ESLVANNIVLAIYRHLSNPECRQYLLRQAFE 123
+ +V N++ + E + + Q
Sbjct: 98 DRIVNQNLIKRYSGEVQAAEAQCFYGFQIMI 128
>gi|213852447|ref|ZP_03381979.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. M223]
Length = 105
Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 8/100 (8%)
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETM-PKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+E + + +L E EI Y G+V + ++ + AN+ +G E LF
Sbjct: 2 EELKLFALDLLMELYDNEICYTEALYAETGWV----NDVKAFLCYNANKALMNLGYEALF 57
Query: 314 K---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELK 350
NP + + + +FF + Y G ++
Sbjct: 58 PPEMADVNPAILAALSPNADENHDFFSGSGSSYVMGKTVE 97
>gi|289583058|ref|YP_003481524.1| ribonucleotide reductase subunit beta [Natrialba magadii ATCC
43099]
gi|289532611|gb|ADD06962.1| Ribonucleotide reductase beta subunit-like protein [Natrialba
magadii ATCC 43099]
Length = 309
Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/298 (14%), Positives = 87/298 (29%), Gaps = 28/298 (9%)
Query: 36 PLKY---GWAWEKYLSACN-NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
P+ Y ++E Y W P + + D W+ ++ E+ F
Sbjct: 2 PIDYSNREKSYELYRKGKREGTWDPDDYDLTQDREDWEQF---SEAEQHRFLATCSGFYD 58
Query: 92 SESLVANNIVLAIYRHLSNP---------ECRQYLLRQAFEEAVHSHTFQYIITSLGLDE 142
E V + + + P + YL +Q +EEA H+ F + +
Sbjct: 59 GEEDVTRTLAPYMMALDALPNDELPFDTVQEEMYLAQQVYEEAKHTDLFSRYFEEVFGTQ 118
Query: 143 GELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFY 202
+ L + + + + + + E
Sbjct: 119 NTAPYREGGYQEQGYSTDDLYDTADDLLAAVNSGDRTELVYSLGEAYLNYMGIVEAQLAR 178
Query: 203 TGFAQIL--------SLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
G+ +GR + + + + +DE+ H+ G V+ Q+ I P +
Sbjct: 179 GGYLSFDQMIELKATQMGRDSVLESFQQAIGKVRQDETRHIENGRWVMKQLAIAEPDIVA 238
Query: 255 KEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY----MQFIANRRCHQIG 308
++ + + L + Y + QY + +I R Q G
Sbjct: 239 DVYEPRMEEYVENRLLSDPLYDDQPFEGYDPDRIGHQLVQYLQDTIDYIGAERFDQYG 296
>gi|1196947|gb|AAA88620.1| unknown protein [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 101
Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
+ ++ + AN+ +G E LF NP + + + +FF + Y G
Sbjct: 30 NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAAVSPNADENHDFFSGSGSSYVMG 89
Query: 347 AELK 350
++
Sbjct: 90 KTVE 93
>gi|330861132|emb|CBX71395.1| hypothetical protein YEW_EY21270 [Yersinia enterocolitica W22703]
Length = 90
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P +VP+ +D+ W LT DE+ + R
Sbjct: 14 NWNKIEDDKDLEVWN---RLTANFWLPEKVPLSNDIPSW---AKLTADEQQLTIRVFTGL 67
Query: 90 ASSESLVANNIVLAIYRHLSNP 111
+++ A+ + P
Sbjct: 68 TLLDTIQNTLGAPALIKDAITP 89
>gi|47830|emb|CAA36920.1| unnamed protein product [Salmonella enterica subsp. enterica
serovar Typhimurium]
Length = 101
Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
+ ++ + AN+ +G E LF NP + + + +FF + Y G
Sbjct: 30 NDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALSPNADENHDFFSGSGSSYVMG 89
Query: 347 AELK 350
++
Sbjct: 90 KTVE 93
>gi|299783626|gb|ADJ41624.1| Ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
fermentum CECT 5716]
Length = 306
Score = 50.9 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/264 (13%), Positives = 66/264 (25%), Gaps = 26/264 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+L NN W+ T VP+ DD W LT ++ + L A + + ++
Sbjct: 23 WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
+ L F E+VH+ I L +E
Sbjct: 80 AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEETTAAYYAWADGQAP--------- 130
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
Q D L V+ G ++ + + +
Sbjct: 131 LQAALXDLTKGIEGDDLMRRGLFLIADTVLCAG--------FDWAVLTQPALAQTNQMLK 182
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I+ + ++ Q E P + + L +
Sbjct: 183 NILTGNLIFRDYLAYKFRQGIAELPFAKQEALVAQLTKGAQSLIKLAHQQNEVLLEDAGA 242
Query: 286 GLNAPSCEQYMQFIANRRCHQIGL 309
A + Q+ +GL
Sbjct: 243 ---ANDLVDF-QWR--MLLVALGL 260
>gi|300710888|ref|YP_003736702.1| Ribonucleotide reductase beta subunit-like protein [Halalkalicoccus
jeotgali B3]
gi|299124571|gb|ADJ14910.1| Ribonucleotide reductase beta subunit-like protein [Halalkalicoccus
jeotgali B3]
Length = 297
Score = 50.9 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/201 (17%), Positives = 74/201 (36%), Gaps = 16/201 (7%)
Query: 53 HWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPE 112
HW P E+ + D + + L ++R L F + E+ V ++ E
Sbjct: 28 HWDPAEIDLSVDR---ERLSQLDGATFTDLRRTLALFGAGEAAVTEDLAPLAVVLEGI-E 83
Query: 113 CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTL--- 169
+ ++ Q +EEA H+ F ++ E + R P W + L
Sbjct: 84 DQMFVTTQLYEEAKHADFFDRYWRAVIHPAEEDRGLERTSPLDDR---WFFEAYHDLFER 140
Query: 170 -SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-----LGRANKMVGIAEQ 223
+D + + L +++ EG+ TG+ + + + + G+ +
Sbjct: 141 NERAMDRVLKEDTPENRARALCHYHLTIEGVIAQTGYYAVQTSYSGEIPELPLLPGLVDG 200
Query: 224 YQYIMRDESLHLNFGIDVINQ 244
+ I DE H+ FG+ + +
Sbjct: 201 FTEIRGDEGRHVGFGMAKLKE 221
>gi|166367087|ref|YP_001659360.1| ribonucleoside-diphosphate reductase beta chain [Microcystis
aeruginosa NIES-843]
gi|166089460|dbj|BAG04168.1| ribonucleoside-diphosphate reductase beta chain [Microcystis
aeruginosa NIES-843]
Length = 64
Score = 50.9 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 7 LSPIQAGEKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWM 55
+SPI ++++ + + ++ QL ++Y WA Y N W+
Sbjct: 14 ISPIFNPAGDDAIENRSIWFGNTTNLMQLNDVRYTWAVGLYQQMRENFWI 63
>gi|184156149|ref|YP_001844489.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
fermentum IFO 3956]
gi|183227493|dbj|BAG28009.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
fermentum IFO 3956]
Length = 306
Score = 50.9 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/264 (13%), Positives = 67/264 (25%), Gaps = 26/264 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+L NN W+ T VP+ DD W LT ++ + L A + + ++
Sbjct: 23 WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
+ L F E+VH+ I L +E
Sbjct: 80 AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEETTAAYYAWADGQAP--------- 130
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
Q + D L V+ G ++ + + +
Sbjct: 131 LQAALTDLTKGIEGDDLMRRGLFLIADTVLCAG--------FDWAVLTQPALAQTNQMLK 182
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I+ + ++ Q E P + + L +
Sbjct: 183 NILTGNLIFRDYLAYKFRQGIAELPFAKQEALVAQLTKGAQSLIKLAHQQNEALLEDAGA 242
Query: 286 GLNAPSCEQYMQFIANRRCHQIGL 309
A + Q+ +GL
Sbjct: 243 ---ANDLVDF-QWR--MLLVALGL 260
>gi|60416874|emb|CAD71197.1| ribonucleoside-diphosphate reductase small subunit [Bacillus
subtilis]
Length = 123
Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L +E+ + L ++ N + +
Sbjct: 21 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 77
Query: 105 YRHLSNPECRQYLLRQAFEEA-VHSHTFQYIITSLGLDE--GELFN 147
H+ + + L A E VH+ ++ I +L E E+F
Sbjct: 78 AEHVEGHQRKAVLNFMAMMENAVHAKSYSNIFLTLAPTEKINEVFE 123
>gi|309805905|ref|ZP_07699937.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LactinV 03V1-b]
gi|308167681|gb|EFO69828.1| ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus
iners LactinV 03V1-b]
Length = 145
Score = 50.6 bits (119), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 17/154 (11%)
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPSITAKANWALQYTQTL 169
+ AF AVH+ ++ I ++L + E N ++ A+A + Y
Sbjct: 1 HEQAIYANFAFMVAVHARSYGTIFSTLCNSDQIDEAHNWVINNEALQARAKALIPYYTGN 60
Query: 170 SSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
V + G Y GF L NK+ A+ + I+R
Sbjct: 61 D---------------PLKSKVAAAMMPGFLLYGGFYLPFYLSSRNKLPNTADIIRLILR 105
Query: 230 DESLHLNFGIDVINQIKIENPHLWTKEFQQKSRT 263
D+ +H + Q + E +
Sbjct: 106 DKVIHNYYSGYKYQQKLAKLAPQRQAEMKDFVFC 139
>gi|260662380|ref|ZP_05863275.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
fermentum 28-3-CHN]
gi|260553071|gb|EEX26014.1| ribonucleoside-diphosphate reductase beta subunit [Lactobacillus
fermentum 28-3-CHN]
Length = 306
Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/264 (13%), Positives = 67/264 (25%), Gaps = 26/264 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+L NN W+ T VP+ DD W LT ++ + L A + + ++
Sbjct: 23 WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
+ L F E+VH+ I L +E
Sbjct: 80 AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEETTAAYYAWANGQAP--------- 130
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
Q + D L V+ G ++ + + +
Sbjct: 131 LQAALTDLTKGIEGDDLMRRGLFLIADTVLCAG--------FDWAVLTQPALAQTNQMLK 182
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I+ + ++ Q E P + + L +
Sbjct: 183 NILTGNLIFRDYLAYKFRQGIAELPFAKQEALVAQLTKGAQSLIKLAHQQNEALLEDAGA 242
Query: 286 GLNAPSCEQYMQFIANRRCHQIGL 309
A + Q+ +GL
Sbjct: 243 ---ANDLVDF-QWR--MLLVALGL 260
>gi|227515316|ref|ZP_03945365.1| ribonucleoside-diphosphate reductase, subunit beta [Lactobacillus
fermentum ATCC 14931]
gi|227086330|gb|EEI21642.1| ribonucleoside-diphosphate reductase, subunit beta [Lactobacillus
fermentum ATCC 14931]
Length = 306
Score = 50.2 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/264 (13%), Positives = 66/264 (25%), Gaps = 26/264 (9%)
Query: 46 YLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIY 105
+L NN W+ T VP+ DD W LT ++ + L A + + ++
Sbjct: 23 WLKLTNNFWLDTRVPITDDQPSWH---ALTAQQQAQVGHALAGRALLSAFQSELGAPSLR 79
Query: 106 RHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQY 165
+ L F E+VH+ I L +E
Sbjct: 80 AGRRTQQEEAVLNLITFMESVHTKAVTTIFRRLTDEETTAAYYAWADGQAP--------- 130
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
Q D L V+ G ++ + + +
Sbjct: 131 LQAALIDLTKGIEGDDLMRRGLFLIADTVLCAG--------FDWAVLTQPALAQTNQMLK 182
Query: 226 YIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFV 285
I+ + ++ Q E P + + L +
Sbjct: 183 NILTGNLIFRDYLAYKFRQGIAELPFAKQEALVAQLTKGAQSLIKLAHQQNEALLEDAGA 242
Query: 286 GLNAPSCEQYMQFIANRRCHQIGL 309
A + Q+ +GL
Sbjct: 243 ---ANDLVDF-QWR--MLLVALGL 260
>gi|329575047|gb|EGG56599.1| hypothetical protein HMPREF9520_01787 [Enterococcus faecalis
TX1467]
Length = 116
Score = 50.2 bits (118), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 254 TKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+ + +L+E E Y E +G + ++++ AN+ +G++PLF
Sbjct: 8 QDKLKDWMYNLLYELYENEERYTEELYDD--LGWT-EEVKTFLRYNANKALMNLGMDPLF 64
Query: 314 ---KYTENPFPWMSEVIDLKKEKNFFET 338
NP M+ + +FF
Sbjct: 65 ADTANDVNPIV-MNGISTGTSNHDFFSQ 91
>gi|242069239|ref|XP_002449896.1| hypothetical protein SORBIDRAFT_05g025245 [Sorghum bicolor]
gi|241935739|gb|EES08884.1| hypothetical protein SORBIDRAFT_05g025245 [Sorghum bicolor]
Length = 79
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 287 LNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+N QY+ FIA+ + + ++ NPF WM E+I L+ +
Sbjct: 32 MNGRLMSQYIGFIADYLLMALEHKKMYDVA-NPFDWM-ELISLQGK 75
>gi|226331041|ref|ZP_03806559.1| hypothetical protein PROPEN_04971 [Proteus penneri ATCC 35198]
gi|225201836|gb|EEG84190.1| hypothetical protein PROPEN_04971 [Proteus penneri ATCC 35198]
Length = 86
Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFK---YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
++++ + AN+ +G E LF +P S D + +FF + Y G
Sbjct: 15 EDVKKFLHYNANKALMNLGYEALFPDEITDVSPAILSSLSPDANENHDFFSGSGSSYVIG 74
Query: 347 AEL-----KWD 352
+ WD
Sbjct: 75 KTINTEDDDWD 85
>gi|289809666|ref|ZP_06540295.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 74
Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVI 327
QY+++I N R +GL+ F+ NP PW++ +
Sbjct: 1 DILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL 38
>gi|70926559|ref|XP_735800.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56509782|emb|CAH82994.1| hypothetical protein PC300265.00.0 [Plasmodium chabaudi chabaudi]
Length = 106
Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 251 HLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310
+ + + + A LE + E + + + +Q++Q++A+ +
Sbjct: 1 NHLNNKLKYEVLDYFKTAVDLEYNFCVEMLDFDSLKITKDQVKQFLQYLADTMLVNLKYS 60
Query: 311 PLFKYTENPFPW--MSEVIDLKKEKN 334
+ ++ PF W S++I + KN
Sbjct: 61 KHYN-SKYPFTWKEFSKIIVSENAKN 85
>gi|209523559|ref|ZP_03272113.1| hypothetical protein AmaxDRAFT_0931 [Arthrospira maxima CS-328]
gi|209495964|gb|EDZ96265.1| hypothetical protein AmaxDRAFT_0931 [Arthrospira maxima CS-328]
gi|291570482|dbj|BAI92754.1| ribonucleoside-diphosphate reductase beta chain, fragment
[Arthrospira platensis NIES-39]
Length = 70
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55
N L+PI + +V + M +++ QL ++Y WA Y N W+
Sbjct: 16 NKMPLNPIFNPDGNDDVAHRSMWFGETTNLMQLNDVRYSWAVGLYKQMRENFWV 69
>gi|284051982|ref|ZP_06382192.1| ribonucleoside-diphosphate reductase, beta subunit [Arthrospira
platensis str. Paraca]
Length = 53
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 7 LSPIQAGEKRVNVDDKRM-LNARSDVNQLLPLKYGWAWEKYLSACNNHWM 55
L+PI + +V + M +++ QL ++Y WA Y N W+
Sbjct: 3 LNPIFNPDGNDDVAHRSMWFGETTNLMQLNDVRYSWAVGLYKQMRENFWV 52
>gi|291570483|dbj|BAI92755.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira
platensis NIES-39]
Length = 131
Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 10/137 (7%)
Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREV 152
+ + I ++ PE + Q +E +H+ ++QY+I ++ E +++ +R
Sbjct: 3 SIQTCNIPYIKNSVTAPEVSLCMAEQISQEGMHNQSYQYMIETIIPSERRNYVYDFWRTD 62
Query: 153 PSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLG 212
+ + + Q D E + + EGM+FY GF +L
Sbjct: 63 KVLRDRCEFIAGLYQQYVD--------DPTPENYFVSLMADYLLEGMYFYNGFIFFYNLA 114
Query: 213 RANKMVGIAEQYQYIMR 229
M G A+ ++ I R
Sbjct: 115 SRMLMPGSADIFKMINR 131
>gi|289580515|ref|YP_003478981.1| ribonucleoside-diphosphate reductase subunit beta 2 [Natrialba
magadii ATCC 43099]
gi|289530068|gb|ADD04419.1| ribonucleoside-diphosphate reductase, beta subunit 2 [Natrialba
magadii ATCC 43099]
Length = 310
Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 9/213 (4%)
Query: 45 KYLSACNNHWMPTEVPMQDDLAL-WKSKNGLTDDERLMIKRNLGFFAS--SESLVANNIV 101
Y +A HW P E+ ++ D+ + ++ R L A + +
Sbjct: 20 YYRNAVERHWDPGEIELEQDVENLLAHIEASDEYDQSYWDRTLNGIAKFGAGEDAVTEDL 79
Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVP-SITAKAN 160
+ L N + + +L Q +EEA H+ F + + R P + +
Sbjct: 80 APLATVLDNIDDQLFLTTQLYEEAKHADFFDRYWREVIWTVEDELGWERSNPRNDKWFND 139
Query: 161 WALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS-----LGRAN 215
++ + D + + +++ EG+ TG+ + +
Sbjct: 140 PYVELFDRNRKAQYRLLEDDTPENRAKAYCHYHLTVEGILAQTGYYGMQTSYGGEFEELP 199
Query: 216 KMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+ G+ E + I DE H+ FG++ + ++ E
Sbjct: 200 HLPGLVEGFTKIRSDEGRHVGFGMNQLKKLIAE 232
>gi|289810083|ref|ZP_06540712.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 102
Score = 45.9 bits (107), Expect = 0.009, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D +++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALP 67
Query: 73 G 73
Sbjct: 68 E 68
>gi|257388581|ref|YP_003178354.1| ribonucleoside-diphosphate reductase subunit beta 2 [Halomicrobium
mukohataei DSM 12286]
gi|257170888|gb|ACV48647.1| ribonucleoside-diphosphate reductase, beta subunit 2 [Halomicrobium
mukohataei DSM 12286]
Length = 300
Score = 45.5 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 43/260 (16%), Positives = 80/260 (30%), Gaps = 19/260 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y +A HW P + + DD + ++ + F + E V ++
Sbjct: 20 YYRNAVERHWDPAAIDLDDDR---EPLVEAHPATFDHLRSTVAKFGAGERAVTEDLAPLS 76
Query: 105 YRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLD-EGELFNMYREVPSITAKANWAL 163
L + + YL Q +EEA H F+ T++ E E +
Sbjct: 77 V-VLDDAADQAYLSTQLYEEARHLDFFERYWTAVINPVERERDLPVSSPTEDRWVNDAYD 135
Query: 164 QYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFA-----QILSLGRANKMV 218
+ + D + L +++ EG+ T + S +
Sbjct: 136 ELLARTDAAMHRLLDDDTPEHRAIALCHYHLTIEGILAQTAYWGLQQSYGPSEPDLPTLP 195
Query: 219 GIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHE 278
G + I DE H+ FG+ + ++ E Q + E L +
Sbjct: 196 GFTTGLERIRSDEGRHVGFGMSKLRELVAE------GVDPQLLHDTVTELLGLVQQTTTD 249
Query: 279 TMPKGFV---GLNAPSCEQY 295
+ G G +A + Y
Sbjct: 250 GLGDGSEETPGPSADDLQNY 269
>gi|313125821|ref|YP_004036091.1| hypothetical protein Hbor_10540 [Halogeometricum borinquense DSM
11551]
gi|312292186|gb|ADQ66646.1| hypothetical protein Hbor_10540 [Halogeometricum borinquense DSM
11551]
Length = 297
Score = 45.5 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 39/275 (14%), Positives = 94/275 (34%), Gaps = 22/275 (8%)
Query: 42 AWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIV 101
A + A HW P E+ + D A + + L ++ + F + E V ++V
Sbjct: 24 AERYFRHATERHWSPYEIDLAADRA---AISDLGRSAFTQLRATIAMFGAGEENVTEDLV 80
Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
+ + R ++ +EEA H+ F+ + + P+ W
Sbjct: 81 PLAATTTNKTDQR-FVASHIYEEAKHAAFFERYWKDVIRPAE---DARGLDPTDPTADRW 136
Query: 162 ALQYTQTLSS----PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL----GR 213
+ + + D +++ EG++ TGF I +
Sbjct: 137 FTAAYEEIFNRTETAMNQLLDDDTPTNRANAYCHYHLTVEGVFGQTGFHAIEATFDPETD 196
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
+ G+ E ++ +DE H+ +G++ + ++ + ++ T+ +
Sbjct: 197 GPSLPGLVEGISHVRQDEGRHVGYGMNQLAELLQRT-AVERSFVEETVETLAEPVDAVVE 255
Query: 274 AYAHETMPKGFVGLNAPSCEQY-MQFIANRRCHQI 307
+P G ++ + ++ + R Q+
Sbjct: 256 RMGWRRLP----GPDSDDLTAFAVRKRRD-RLAQL 285
>gi|76803161|ref|YP_331256.1| ribonucleoside-diphosphate reductase, beta subunit 2 [Natronomonas
pharaonis DSM 2160]
gi|76559026|emb|CAI50624.1| probable ribonucleoside-diphosphate reductase, beta subunit 2
[Natronomonas pharaonis DSM 2160]
Length = 306
Score = 45.5 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 74/211 (35%), Gaps = 15/211 (7%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK--RNLGFFASSESLVANNIVL 102
Y +A HW P ++ + D K+ TD + R+ + +
Sbjct: 20 YYRNAVERHWDPHDIELDTDRENLKAFLDSTDTPETYLDGLRSGVARFGAGEQAVTEDLA 79
Query: 103 AIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWA 162
+ L + + + ++ Q +EEA H+ F + + + PS W
Sbjct: 80 PLATALGSIDDQMFVTTQIYEEAKHTDFFDRYWREVIHP---VEDALGLDPSSPTDETWF 136
Query: 163 LQYTQTLSSPS----FTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL------SLG 212
+ L + ++F + +++V EG+ TG+ + S
Sbjct: 137 NDAYEELFDRNEEAMERLLAAPTAEQFAKAYCHYHLVIEGILAQTGYYGMQQSYSADSYP 196
Query: 213 RANKMVGIAEQYQYIMRDESLHLNFGIDVIN 243
+ G+ + + I +DE H+ FG+ +
Sbjct: 197 ELPHLPGLCDGFTKIRQDEGRHVGFGMAKLK 227
>gi|269861603|ref|XP_002650501.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
gi|220066034|gb|EED43552.1| ribonucleoside-diphosphate reductase small chain [Enterocytozoon
bieneusi H348]
Length = 53
Score = 45.5 bits (106), Expect = 0.013, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 315 YTENPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
+ NPF +M E I L+ + NFFE R YQ+G
Sbjct: 7 HVSNPFDFM-ENISLQGKTNFFERREANYQKG 37
>gi|213855388|ref|ZP_03383628.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. M223]
Length = 108
Score = 45.2 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 14 EKRVNVDDKRMLNARS-DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M + +V + KY + + W P EV + D ++
Sbjct: 8 QTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQ--- 64
Query: 73 GLTDDER 79
L + E+
Sbjct: 65 ALPEHEK 71
>gi|145637995|ref|ZP_01793631.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae PittHH]
gi|145268805|gb|EDK08772.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae PittHH]
Length = 115
Score = 45.2 bits (105), Expect = 0.016, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT----KEFQQKSRTMLHEATLLE 272
M G A+ ++I RDE+LHL ++N + +E +Q++ + A E
Sbjct: 1 MEGNAKIIKFIARDEALHLTGTQHILNIMAAGQDDPEMAEIAEECKQEAYDLFVAAAEQE 60
Query: 273 IAYAHETMPKG-FVGLNAPSCEQYMQFIA 300
A+A G +GLN QY+++I
Sbjct: 61 KAWADYLFKDGSMIGLNRDILVQYVEYIT 89
>gi|60416888|emb|CAD71206.1| ribonucleoside-diphospate reductase small subunit [Bacillus
subtilis]
Length = 98
Score = 44.8 bits (104), Expect = 0.022, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 45 KYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAI 104
Y W+P E+ + DL WK L +E+ + L ++ N + +
Sbjct: 26 FYNQNVKQFWLPEEIALNGDLLTWK---YLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIV 82
Query: 105 YRHLSNPECRQYLLRQ 120
H+ + + L
Sbjct: 83 AEHVDGHQRKAVLNFM 98
>gi|213028365|ref|ZP_03342812.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 73
Score = 44.4 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLVA 97
+++
Sbjct: 67 DTIQN 71
>gi|213420353|ref|ZP_03353419.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 150
Score = 44.0 bits (102), Expect = 0.034, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 18/143 (12%)
Query: 118 LRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS------ 171
AF E +HS ++ +II ++ D +F+ I +A Y L
Sbjct: 1 ETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDELIEMTSYWH 60
Query: 172 -----------PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGI 220
+ ++ ++ L + E + FY FA + M G
Sbjct: 61 LLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGN 119
Query: 221 AEQYQYIMRDESLHLNFGIDVIN 243
A+ + I RDE+LHL ++N
Sbjct: 120 AKIIRLIARDEALHLTGTQHMLN 142
>gi|145638051|ref|ZP_01793677.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae PittHH]
gi|145268754|gb|EDK08731.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus
influenzae PittHH]
Length = 73
Score = 43.6 bits (101), Expect = 0.044, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 14 EKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKN 72
+ + + + M +V + KY + + W P EV + D +
Sbjct: 8 QNKNDQLKEPMFFGQNVNVARYDQQKYETFEKLIEKQLSFFWRPEEVDVSQDRIDY---A 64
Query: 73 GLTDDERLM 81
L + E+ +
Sbjct: 65 ALPEHEKHI 73
>gi|213621399|ref|ZP_03374182.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
Length = 70
Score = 43.6 bits (101), Expect = 0.046, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 33 QLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASS 92
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R
Sbjct: 10 NWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLL 66
Query: 93 ESLV 96
+++
Sbjct: 67 DTIQ 70
>gi|328710829|ref|XP_003244373.1| PREDICTED: hypothetical protein LOC100575936 [Acyrthosiphon pisum]
Length = 66
Score = 42.9 bits (99), Expect = 0.070, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 295 YMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR--VTEY 343
Y+ A+R ++G + +PF E+ + + NFFE R T Y
Sbjct: 10 YIGDFADRLLKELGFQQFTGRQTHPF---MELTPQQGKTNFFERRLSNTNY 57
>gi|14602365|ref|NP_148912.1| ORF128 RR2A [Cydia pomonella granulovirus]
gi|14591883|gb|AAK70788.1|U53466_128 ORF128 RR2A [Cydia pomonella granulovirus]
Length = 362
Score = 42.9 bits (99), Expect = 0.071, Method: Composition-based stats.
Identities = 26/216 (12%), Positives = 65/216 (30%), Gaps = 13/216 (6%)
Query: 29 SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGF 88
+ ++ P Y +W + NHW E + + + + + ++
Sbjct: 33 DNRLKIWPPTYTPSWNYLVEHQINHWYANE---HKPMDDLNGFDKIDSAWQNALLQSFAV 89
Query: 89 FASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
A + V + I + + + QA E H + ++ + N
Sbjct: 90 LAIGDDKVMDLISNSDIEWEES--TKWMFADQAARETTHKIVYNRMLELACVSRSYTVNT 147
Query: 149 YREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQI 208
+++ F ++ + + L + E F F I
Sbjct: 148 LTS-------GDFSHYIMDCRVLDEFQLPERNEVNDKVLFLSTMILC-ERYLFAAPFLII 199
Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQ 244
+G + + + +M+DE +H + ++
Sbjct: 200 NLMGESGFINKCVKINMQVMKDEHVHYKHAVQLLMD 235
>gi|309806472|ref|ZP_07700477.1| hypothetical protein HMPREF9212_1388 [Lactobacillus iners LactinV
03V1-b]
gi|308167145|gb|EFO69319.1| hypothetical protein HMPREF9212_1388 [Lactobacillus iners LactinV
03V1-b]
Length = 103
Score = 42.1 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 30 DVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFF 89
+ N++ K W N W+P ++P+ +DL W S L+ D + +I R
Sbjct: 28 NWNKIDDDKDLEVWN---RVTQNFWLPEKIPVSNDLPSWNS---LSKDWQQLITRTFTGL 81
Query: 90 ASSESLVA 97
+++ A
Sbjct: 82 TLLDTIQA 89
>gi|223954268|gb|ACN30264.1| UL40 [Anatid herpesvirus 1]
Length = 46
Score = 41.7 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 307 IGLEPLFKYT----ENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKW 351
IGL PLF + P +M+ ++ NFFE R T Y G+ L
Sbjct: 2 IGLAPLFDEPPPKHDFPLAFMA----TSQQTNFFERRNTTYA-GSVLND 45
>gi|328480210|gb|EGF49138.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
rhamnosus MTCC 5462]
Length = 101
Score = 41.3 bits (95), Expect = 0.23, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 290 PSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFETRVTEYQQG 346
++++ AN+ +G E F T NP M+ + +FF Y+ G
Sbjct: 22 DEVLTFLRYNANKALMNLGQETAFPDTADDVNPIV-MNGISTSTANHDFFSQVGNGYRLG 80
Query: 347 A--ELKWD 352
++ D
Sbjct: 81 QVEAMEDD 88
>gi|195391948|ref|XP_002054621.1| GJ22707 [Drosophila virilis]
gi|194152707|gb|EDW68141.1| GJ22707 [Drosophila virilis]
Length = 857
Score = 40.9 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 35 LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76
P K+ +W Y W+P +VP DD+ + L+D
Sbjct: 732 FPFKHPDSWRAYPYHWA--WLPQAKVPFSDDIKD-QVLPQLSD 771
>gi|195062926|ref|XP_001996279.1| GH22280 [Drosophila grimshawi]
gi|193899774|gb|EDV98640.1| GH22280 [Drosophila grimshawi]
Length = 756
Score = 40.9 bits (94), Expect = 0.28, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 35 LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76
P K+ +W Y W+P +VP DD+ + L+D
Sbjct: 631 FPFKHPDSWRAYPYHWA--WLPQAKVPFSDDIKD-QVLPQLSD 670
>gi|209523560|ref|ZP_03272114.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima
CS-328]
gi|209495965|gb|EDZ96266.1| ribonucleoside-diphosphate reductase beta chain [Arthrospira maxima
CS-328]
Length = 107
Score = 40.5 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
Query: 117 LLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYREVPSITAKANWALQYTQTLSSPSF 174
+ Q +E +H+ ++QY+I ++ E +++ +R + + + Q
Sbjct: 1 MAEQISQEGMHNQSYQYMIETIIPSERRNYVYDFWRTDKVLRDRCEFIAGLYQEYVD--- 57
Query: 175 TTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMR 229
D E + + EGM+FY GF +L M G A+ ++ I R
Sbjct: 58 -----DPTPENYFVSLMADYLLEGMYFYNGFIFFYNLASRMLMPGSADIFKMINR 107
>gi|195451115|ref|XP_002072774.1| GK13780 [Drosophila willistoni]
gi|194168859|gb|EDW83760.1| GK13780 [Drosophila willistoni]
Length = 838
Score = 40.5 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 35 LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLALWKSKNGLTD 76
P K+ +W Y W+P +VP +D+ L+D
Sbjct: 713 FPFKHPDSWRAYPYHWA--WLPQAKVPFSEDIKD-HVLPQLSD 752
>gi|157105736|ref|XP_001649004.1| phosphatidylinositol 4-kinase type-ii [Aedes aegypti]
gi|108880035|gb|EAT44260.1| phosphatidylinositol 4-kinase type-ii [Aedes aegypti]
Length = 556
Score = 39.8 bits (91), Expect = 0.62, Method: Composition-based stats.
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 35 LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLAL 67
P K+ +W Y W+P ++P D+
Sbjct: 428 FPFKHPDSWRAYPYHWA--WLPQAKIPFSQDIKD 459
>gi|328480213|gb|EGF49140.1| ribonucleotide-diphosphate reductase subunit beta [Lactobacillus
rhamnosus MTCC 5462]
Length = 87
Score = 39.8 bits (91), Expect = 0.74, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 193 YVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHL 252
V E FY+GF L NK+ +AE + I+RDES+H + E P
Sbjct: 19 SVFLETFLFYSGFFTPLYYLGNNKLTNVAEIIKLIIRDESVHGTYIGYKFQLGFNELPEA 78
Query: 253 WTKEFQQKS 261
++ Q
Sbjct: 79 EQQQLQDWM 87
>gi|74419026|gb|ABA03240.1| ribonucleoside diphosphate reductase small subunit
[Enterobacteria phage RB2]
Length = 69
Score = 39.4 bits (90), Expect = 0.88, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + V+V ++ M + ++ E + W P EV +
Sbjct: 1 MSTVFN-TNPVDVLNEPMFFGSGLGLARYDIQ--RHRVFEELIERQISFFWRPEEVNLMM 57
Query: 64 DLALWKSKNG 73
D A +
Sbjct: 58 DAAQFNKLPQ 67
>gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040830|gb|ACT57626.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 30
Score = 39.0 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 24/25 (96%), Positives = 25/25 (100%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRML 25
MANNTGLSPIQAGEKRVNVDDKR+L
Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRIL 25
>gi|260174332|ref|ZP_05760744.1| hypothetical protein BacD2_20921 [Bacteroides sp. D2]
Length = 153
Score = 39.0 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
F + K F+ + + E ++ + P G + Y
Sbjct: 69 EFLNHLYMATCQGCRKEKCKLFKTCNVRVCSEEKQVDYCFQCSHFPCENTGFDEHL---Y 125
Query: 296 MQFIA-NRRCHQIGLEPLFKYTEN 318
+F+A NRR +IG+E ++ ++
Sbjct: 126 KRFVAINRRMQEIGIEKYYEEVKD 149
>gi|315922600|ref|ZP_07918840.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313696475|gb|EFS33310.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 150
Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 236 NFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQY 295
F + K F+ + + E ++ + P G + Y
Sbjct: 66 EFLNHLYMATCQGCRKEKCKLFKTCNVRVCSEEKQVDYCFQCSHFPCENTGFDEHL---Y 122
Query: 296 MQFIA-NRRCHQIGLEPLFKYTEN 318
+F+A NRR +IG+E ++ ++
Sbjct: 123 KRFVAINRRMQEIGIEKYYEEVKD 146
>gi|194767627|ref|XP_001965916.1| GF11648 [Drosophila ananassae]
gi|190619759|gb|EDV35283.1| GF11648 [Drosophila ananassae]
Length = 678
Score = 37.8 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 35 LPLKYGWAWEKYLSACNNHWMPT-EVPMQDDLA 66
P K+ +W Y W+P ++P +D+
Sbjct: 553 FPFKHPDSWRAYPYHWA--WLPQAKIPFSEDIK 583
>gi|158286272|ref|XP_308652.4| AGAP007105-PA [Anopheles gambiae str. PEST]
gi|157020389|gb|EAA04005.4| AGAP007105-PA [Anopheles gambiae str. PEST]
Length = 894
Score = 37.8 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 265 LHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
+ A + + + L+ QY++ + Q+G+ +NP
Sbjct: 755 VENAEYIAEMLVSDVLVTSVGKLSMKMLYQYIRKNFDWILQQLGVS---DVEQNPL 807
>gi|289804144|ref|ZP_06534773.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 130
Score = 37.8 bits (86), Expect = 2.7, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
T T++ + ++ ++ L + E + FY FA + M G A+ +
Sbjct: 15 THTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIR 73
Query: 226 YIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
I RDE+LHL ++N + +++P + +E +Q+ + +A E
Sbjct: 74 LIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEK 125
>gi|330971158|gb|EGH71224.1| hypothetical protein PSYAR_11719 [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 25
Score = 37.5 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 17/21 (80%), Positives = 19/21 (90%)
Query: 317 ENPFPWMSEVIDLKKEKNFFE 337
NPFPWMSE+I LKKE+NFFE
Sbjct: 1 TNPFPWMSEIIALKKERNFFE 21
>gi|74419030|gb|ABA03243.1| ribonucleoside diphosphate reductase small subunit
[Enterobacteria phage RB15]
Length = 69
Score = 37.5 bits (85), Expect = 3.1, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 7 LSPIQAGEKRVNVDDKRMLNAR---SDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQD 63
+S + VN+ + M + ++ E + + W P EV +
Sbjct: 1 MSTVFN-TSPVNILTEPMFFGSGLGLARYDIQ--RHRVFEELIEKSLSFFWRPEEVNLMM 57
Query: 64 DLALWKSKNG 73
D A +
Sbjct: 58 DAAQFNKLPQ 67
>gi|213855387|ref|ZP_03383627.1| ribonucleotide-diphosphate reductase subunit beta [Salmonella
enterica subsp. enterica serovar Typhi str. M223]
Length = 160
Score = 37.1 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 166 TQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQ 225
T T++ + ++ ++ L + E + FY FA + M G A+ +
Sbjct: 39 THTVNGKTVVVNLRELKKKLYLCLMSVNAL-EAIRFYVSFACSFAFAERELMEGNAKIIR 97
Query: 226 YIMRDESLHLNFGIDVIN--QIKIENPHL--WTKEFQQKSRTMLHEATLLEI 273
I RDE+LHL ++N + +++P + +E +Q+ + +A E
Sbjct: 98 LIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDLFVQAAQQEK 149
>gi|186684872|ref|YP_001868068.1| multi-sensor signal transduction histidine kinase [Nostoc
punctiforme PCC 73102]
gi|186467324|gb|ACC83125.1| multi-sensor signal transduction histidine kinase [Nostoc
punctiforme PCC 73102]
Length = 1102
Score = 37.1 bits (84), Expect = 4.0, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 16 RVNVDDKRMLNA--RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDL 65
R VD + + SD QL P + W + A W E+ + D+
Sbjct: 357 RNEVDTETLWAGQYDSDQRQLYPRRSFEVWRESKKAQAQKWTVEEIELARDI 408
>gi|404605|gb|AAD10549.1| uncertain [Mycoplasma genitalium]
Length = 107
Score = 37.1 bits (84), Expect = 4.7, Method: Composition-based stats.
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
+ +++ LE Y E G+ + + + + A + +G + F E
Sbjct: 7 ESICFELMYRLIELEKDYLKELYEG--FGIVDDAIK-FSVYNAGKFLQNLGYDSPFTAAE 63
Query: 318 NPFP---WMSEVIDLKKEKNFFETRVTEYQQG 346
+ + +FF + Y G
Sbjct: 64 TRIKPEIFAQLSARADENHDFFSGNGSSYVMG 95
>gi|52550536|gb|AAU84385.1| transposase [uncultured archaeon GZfos9E5]
Length = 398
Score = 36.7 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 10 IQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAW--------EKYLSACNNHWMPTEVPM 61
I+ G + + + + + R+ L L E Y A W +V +
Sbjct: 81 IENGTEVLRLRKRGVPAPRTVRYHLEKLVIDDILSQFNGISEELYRIAKKQRWFVNKVDL 140
Query: 62 QDDLALWKSKNGLTDDER 79
D+ W + D+
Sbjct: 141 SIDIHDWMYYGDIDDEMV 158
>gi|170061542|ref|XP_001866278.1| phosphatidylinositol 4-kinase type-ii [Culex quinquefasciatus]
gi|167879742|gb|EDS43125.1| phosphatidylinositol 4-kinase type-ii [Culex quinquefasciatus]
Length = 501
Score = 36.7 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 18/73 (24%)
Query: 11 QAGEKRVNVDDKRMLNARSDVN--QL-------------LPLKYGWAWEKYLSACNNHWM 55
+ + + +D N QL P K+ +W Y W+
Sbjct: 360 STPSGMPRSNSRLEMAENTDWNLVQLPEIKIAAIDNGLAFPFKHPDSWRAYPYHWA--WL 417
Query: 56 PT-EVPMQDDLAL 67
P + P D+
Sbjct: 418 PQAKNPFSQDIKD 430
>gi|193688328|ref|XP_001947555.1| PREDICTED: phosphatidylinositol 4-kinase type 2-beta-like
[Acyrthosiphon pisum]
Length = 454
Score = 36.3 bits (82), Expect = 6.9, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 11/58 (18%)
Query: 35 LPLKYGWAWEKYLSACNNHWMPT-EVPMQDD--------LALWKSKNGLTDDERLMIK 83
P K+ +W Y W+P ++P D L+ L DD + K
Sbjct: 320 FPFKHPDSWRAYPYHWA--WLPQAKIPFSKDTKELVLPYLSDMNFVQDLCDDLYTLFK 375
>gi|328713560|ref|XP_003245116.1| PREDICTED: ribonucleoside-diphosphate reductase small chain-like
[Acyrthosiphon pisum]
Length = 62
Score = 35.9 bits (81), Expect = 8.5, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 296 MQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETR 339
++ A+ + G +PF M E+ + + NFFE R
Sbjct: 11 IEDFADGLLKESGFLQFTGRQTHPF--M-ELTSQQGKTNFFERR 51
>gi|15211865|emb|CAC51101.1| ribonucleotide reductase small subunit [Bacillus sp. M1918]
Length = 86
Score = 35.9 bits (81), Expect = 8.9, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
K D L V V E FY+GF L K++ E I+RDE++H +
Sbjct: 19 KKNDDISLFKGMVASVFLESFLFYSGFYYPLYFYGQGKLMQSGEIVNLIIRDEAIHGVYV 78
Query: 239 IDVINQIK 246
+ ++
Sbjct: 79 GLLAQEVY 86
>gi|15211879|emb|CAC51109.1| ribonucleotide reductase small subunit [Bacillus sp. BSG40]
Length = 86
Score = 35.9 bits (81), Expect = 9.2, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 179 KDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFG 238
+ D L V V E FY+GF L K++ E I+RDE++H +
Sbjct: 19 EKNDDISLFKAMVASVFLESFLFYSGFYYPLYFYGQGKLMQSGEIVNLIIRDEAIHGVYV 78
Query: 239 IDVINQIK 246
+ +I
Sbjct: 79 GLLAQEIY 86
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.313 0.124 0.357
Lambda K H
0.267 0.0379 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,429,986,633
Number of Sequences: 14124377
Number of extensions: 121483334
Number of successful extensions: 269427
Number of sequences better than 10.0: 2766
Number of HSP's better than 10.0 without gapping: 2591
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 259062
Number of HSP's gapped (non-prelim): 2843
length of query: 352
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 212
effective length of database: 2,865,380,850
effective search space: 607460740200
effective search space used: 607460740200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 81 (35.9 bits)