RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate
reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
(352 letters)
>gnl|CDD|180886 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit
beta; Validated.
Length = 369
Score = 692 bits (1787), Expect = 0.0
Identities = 235/352 (66%), Positives = 288/352 (81%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60
+A TGL ++ G RVNVDDKR++N R+DVNQL+P KY WAWEKYL+ C NHWMP EV
Sbjct: 18 LAVATGLEELEGGAARVNVDDKRIINCRADVNQLVPFKYKWAWEKYLAGCANHWMPQEVN 77
Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120
M D+ALWKS NGLT+DER ++KRNLGFF++++SLVANNIVLAIYRH++NPECRQYLLRQ
Sbjct: 78 MSRDIALWKSPNGLTEDERRIVKRNLGFFSTADSLVANNIVLAIYRHITNPECRQYLLRQ 137
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180
AFEEA+H+H +QYI+ SLGLDEGE+FNMY EVPSI AK + + +T++L+ P+F TGT +
Sbjct: 138 AFEEAIHTHAYQYIVESLGLDEGEIFNMYHEVPSIRAKDEFLIPFTRSLTDPNFKTGTPE 197
Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240
DQ+ L++L FY + EG++FY GF QILSLGR NKM GIAEQYQYI+RDES+HLNFGID
Sbjct: 198 NDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGIAEQYQYILRDESMHLNFGID 257
Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300
+INQIK+ENPHLWT EFQ + R ++ EA LE YA +TMP+G +GLNA + Y++FIA
Sbjct: 258 LINQIKLENPHLWTAEFQAEIRELIKEAVELEYRYARDTMPRGVLGLNASMFKDYLRFIA 317
Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352
NRR QIGL+P + TENPFPWMSE+IDLKKEKNFFETRV EYQ G L WD
Sbjct: 318 NRRLQQIGLKPQYPGTENPFPWMSEMIDLKKEKNFFETRVIEYQTGGALSWD 369
>gnl|CDD|181991 PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta;
Reviewed.
Length = 324
Score = 215 bits (551), Expect = 1e-56
Identities = 96/322 (29%), Positives = 150/322 (46%), Gaps = 23/322 (7%)
Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESL 95
++ W +E + N W+P EVP+ +DL WK L+D+E+ + R G ++L
Sbjct: 16 KIEDPWDYEAWKRLTANFWLPEEVPLSNDLKDWKK---LSDEEKNLYTRVFGGLTLLDTL 72
Query: 96 VANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL--DEGELFNMYREVP 153
NN + + ++ PE L AF EAVH+ ++ YI ++L + E F E P
Sbjct: 73 QNNNGMPNLMPDITTPEEEAVLANIAFMEAVHAKSYSYIFSTLCSPEEIDEAFEWAEENP 132
Query: 154 SITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGR 213
+ KA+ + + L V V EG FY+GF L L R
Sbjct: 133 YLQKKADIIQDFYEPLKKKILRK------------AAVASVFLEGFLFYSGFYYPLYLAR 180
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
KM G A+ + I+RDESLH + + + E P L +E + + +L+E E
Sbjct: 181 QGKMTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPELEQEELKDEIYDLLYELYENEE 240
Query: 274 AYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF-KYTENPFPWMSEVIDLKKE 332
AY VGL A ++Y+++ AN+R +GLEPLF + E W++ + + E
Sbjct: 241 AYTELLYDI--VGL-AEDVKKYIRYNANKRLMNLGLEPLFPEEEEVNPIWLNGLSNNADE 297
Query: 333 K-NFFETRVTEYQQGA-ELKWD 352
+FFE + T Y +GA E D
Sbjct: 298 NHDFFEGKGTSYVKGATEATED 319
>gnl|CDD|173476 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small
subunit; Provisional.
Length = 330
Score = 161 bits (408), Expect = 4e-40
Identities = 99/325 (30%), Positives = 159/325 (48%), Gaps = 29/325 (8%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L D L P+KY W Y A + W E+ + +DL W+ L D ER IK
Sbjct: 14 LLKENPDRFVLFPIKYPDIWRMYKKAEASFWTAEEIDLGNDLKDWEK---LNDGERHFIK 70
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
L FFA+S+ +V N+ R + PE R + Q E +HS T+ +I + DE
Sbjct: 71 HVLAFFAASDGIVLENLAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEE 130
Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
E LF+ +P+I KA WA ++ SS SF + V + EG++
Sbjct: 131 EKDRLFHAIETIPAIKKKAEWAAKWIN--SSNSF------------AERLVAFAAVEGIF 176
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
F F I L + M G+ + I RDE LH +F + + +K + P + Q+
Sbjct: 177 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLP---RERVQE- 232
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
++ EA +E + + +P +G+N+ QY++F+A+R +G+ ++ ++NPF
Sbjct: 233 ---IIKEAVEIEREFICDALPVDLIGMNSRLMAQYIEFVADRLLVALGVPKIYN-SKNPF 288
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQ 345
WM ++I L+ + NFFE RV EYQ+
Sbjct: 289 DWM-DMISLQGKTNFFEKRVGEYQK 312
>gnl|CDD|178110 PLN02492, PLN02492, ribonucleoside-diphosphate reductase.
Length = 324
Score = 149 bits (379), Expect = 9e-37
Identities = 101/325 (31%), Positives = 156/325 (48%), Gaps = 29/325 (8%)
Query: 24 MLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIK 83
+L D + P+KY WE Y A + W EV + DL W+ LTDDER I
Sbjct: 3 LLAENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSADLKDWEK---LTDDERHFIS 59
Query: 84 RNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG 143
L FFA+S+ +V N+ + + PE R + Q E +HS + ++ + D
Sbjct: 60 HVLAFFAASDGIVLENLAARFMKEVQVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPK 119
Query: 144 E---LFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMW 200
E LFN +P + KA+WAL++ D+ F + L F V EG++
Sbjct: 120 EKDRLFNAIETIPCVAKKADWALRWI-------------DSSASFAERLVAFACV-EGIF 165
Query: 201 FYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQK 260
F F I L + M G+ + I RDE LH +F + + L K +++
Sbjct: 166 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS-------LLKNKLSEER 218
Query: 261 SRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF 320
+ ++ EA +E + + +P VG+NA QY++F+A+R +G E ++ NPF
Sbjct: 219 VKEIVCEAVEIEKEFVCDALPCALVGMNADLMSQYIEFVADRLLVALGYEKVYN-VVNPF 277
Query: 321 PWMSEVIDLKKEKNFFETRVTEYQQ 345
WM E+I L+ + NFFE RV EYQ+
Sbjct: 278 DWM-ELISLQGKTNFFEKRVGEYQK 301
>gnl|CDD|139206 PRK12759, PRK12759, bifunctional
gluaredoxin/ribonucleoside-diphosphate reductase subunit
beta; Provisional.
Length = 410
Score = 119 bits (300), Expect = 1e-27
Identities = 89/321 (27%), Positives = 150/321 (46%), Gaps = 21/321 (6%)
Query: 36 PLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNG-LTDDERLMIKRNLGFFASSES 94
P Y WA + + HW+ E+ + +D+ WK NG +T E+ I L F S+
Sbjct: 102 PFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWK--NGKITKVEKEYITNILRLFTQSDV 159
Query: 95 LVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPS 154
V N N E R L A E +H + + +LGL + E ++ + E +
Sbjct: 160 AVGQNYYDQFIPLFKNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE-YHAFLEYKA 218
Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVF-EGMWFYTGFAQILSLGR 213
+T K ++ + + P+ G L + VF EG+ + FA +L+ R
Sbjct: 219 MTDKIDFMMD-----ADPTTRRGL---------GLCLAKTVFNEGVALFASFAMLLNFQR 264
Query: 214 ANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEI 273
KM G+ + ++ +RDES+H+ + ENP++ EF+++ M +A LE
Sbjct: 265 FGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELED 324
Query: 274 AYAHETMPKGFV-GLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKE 332
+ G + GL A +QY++ I +RR +Q+GL+ ++ +NP W+ +++
Sbjct: 325 RFIELAYELGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADH 384
Query: 333 KNFFETRVTEYQ-QGAELKWD 352
NFFE RVTEY+ G WD
Sbjct: 385 TNFFENRVTEYEVAGLTGSWD 405
>gnl|CDD|181647 PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta;
Reviewed.
Length = 376
Score = 63.4 bits (155), Expect = 8e-11
Identities = 72/301 (23%), Positives = 127/301 (42%), Gaps = 27/301 (8%)
Query: 44 EKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLA 103
EK LS W P EV + D + L + E+ + NL + +S+ + +A
Sbjct: 42 EKQLSF---FWRPEEVDVSRDRIDY---QALPEHEKHIFISNLKYQTLLDSIQGRSPNVA 95
Query: 104 IYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKAN--- 160
+ +S PE ++ +F E +HS ++ +II ++ D +F+ I +A
Sbjct: 96 LLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEEILKRAKDIS 155
Query: 161 -------WALQYTQTLSSPSFTTGTKDAD---QEFLQDLFVFYV---VFEGMWFYTGFAQ 207
Y L + T K +E + L++ + E + FY FA
Sbjct: 156 SYYDDLIEMTSYYHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFAC 215
Query: 208 ILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVIN--QIKIENPHLW--TKEFQQKSRT 263
+ M G A+ + I RDE+LHL ++N + ++P + +E +Q+
Sbjct: 216 SFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLMRSGKDDPEMAEIAEECKQECYD 275
Query: 264 MLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPW 322
+ +A E +A G +GLN QY+++I N R +GL+ F+ NP PW
Sbjct: 276 LFVQAAEQEKEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPW 335
Query: 323 M 323
+
Sbjct: 336 I 336
>gnl|CDD|140023 PRK13967, nrdF1, ribonucleotide-diphosphate reductase subunit beta;
Provisional.
Length = 322
Score = 60.1 bits (145), Expect = 7e-10
Identities = 63/292 (21%), Positives = 120/292 (41%), Gaps = 42/292 (14%)
Query: 32 NQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFAS 91
N+LL K WE+ N W+P ++P+ +DLA W++ + + + L +
Sbjct: 15 NRLLDAKDLQVWERL---TGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDT 71
Query: 92 SESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDE--GELFNMY 149
+++ V +A+ P L AF E+VH+ ++ I ++L + + F+
Sbjct: 72 AQATVG---AVAMIDDAVTPHEEAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAFDWS 128
Query: 150 REVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQIL 209
+ P + KA + Y + + + V+ E FY+GF +
Sbjct: 129 EQNPYLQRKAQIIVDYYRGDDALKRKASS---------------VMLESFLFYSGFYLPM 173
Query: 210 SLGRANKMVGIAEQYQYIMRDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSR 262
K+ A+ + I+RDE++H + G+ + + + +T E
Sbjct: 174 YWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCE------ 227
Query: 263 TMLHEATLLEIAYAHETMPK-GFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
+LH EI YAH+ + G+ P YM++ AN+ +G +P F
Sbjct: 228 -LLHTLYANEIDYAHDLYDELGWTDDVLP----YMRYNANKALANLGYQPAF 274
>gnl|CDD|140022 PRK13966, nrdF2, ribonucleotide-diphosphate reductase subunit beta;
Provisional.
Length = 324
Score = 59.0 bits (142), Expect = 2e-09
Identities = 64/308 (20%), Positives = 126/308 (40%), Gaps = 42/308 (13%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+P +VP+ +D+ W + LT E+ + R +++ +++ P
Sbjct: 34 NFWLPEKVPVSNDIPSWGT---LTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALTP 90
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR---EVPSITAKANWALQYTQT 168
L AF E+VH+ ++ I ++L E+ + +R E ++ KA LQY +
Sbjct: 91 HEEAVLTNIAFMESVHAKSYSQIFSTL-CSTAEIDDAFRWSEENRNLQRKAEIVLQYYR- 148
Query: 169 LSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIM 228
D+ + V + E FY+GF + K+ A+ + I+
Sbjct: 149 ------------GDEPLKRK--VASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLII 194
Query: 229 RDESLHLNF-------GIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMP 281
RDE++H + G+ +++ + E + + +L E E+ Y +
Sbjct: 195 RDEAVHGYYIGYKFQRGLALVDDVT-------RAELKDYTYELLFELYDNEVEYTQDLYD 247
Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE---NPFPWMSEVIDLKKEKNFFET 338
+ VGL ++++++ AN+ +G E LF E NP + + + +FF
Sbjct: 248 E--VGLTE-DVKKFLRYNANKALMNLGYEALFPRDETDVNPAILSALSPNADENHDFFSG 304
Query: 339 RVTEYQQG 346
+ Y G
Sbjct: 305 SGSSYVIG 312
>gnl|CDD|181390 PRK08326, PRK08326, ribonucleotide-diphosphate reductase subunit
beta; Validated.
Length = 311
Score = 49.6 bits (119), Expect = 1e-06
Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 42/223 (18%)
Query: 54 WMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNI--VLAIYRHLSNP 111
W P ++ D W+ L+D+ER R F + E V +I +++
Sbjct: 39 WNPADIDFSRDAEDWEK---LSDEERDYATRLCAQFIAGEEAVTLDIQPLISAMAAEGRL 95
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG------------ELFNMYREVPSITAKA 159
E YL + AFEEA H+ F+ ++G+ E ++F Y E+P+ A
Sbjct: 96 EDEMYLTQFAFEEAKHTEAFRRWFDAVGVTEDLSVYTDDNPSYRQIF--YEELPA----A 149
Query: 160 NWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTG---FAQILSLGRANK 216
L +T +Q ++ + V EG+ TG + +I
Sbjct: 150 LNRL-----------STDPSPENQ--VRASVTYNHVVEGVLAETGYYAWRKI--CVTRGI 194
Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQ 259
+ G+ E + I DE H+ +G ++ + W F++
Sbjct: 195 LPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDSNW-DVFEE 236
>gnl|CDD|184425 PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit
beta; Provisional.
Length = 335
Score = 46.7 bits (111), Expect = 9e-06
Identities = 58/266 (21%), Positives = 103/266 (38%), Gaps = 27/266 (10%)
Query: 52 NHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
N W+P +VP+ +DL W L +D + +I R +++ A +A H
Sbjct: 45 NFWLPEKVPVSNDLNSW---RSLGEDWQQLITRTFTGLTLLDTVQATVGDVAQIPHSQTD 101
Query: 112 ECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSS 171
+ AF A+H+ ++ I ++L E ++ + V S +LQ +
Sbjct: 102 HEQVIYTNFAFMVAIHARSYGTIFSTLCSSE-QIEEAHEWVVS-----TESLQRRARVLI 155
Query: 172 PSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDE 231
P + TG + V + G Y GF L K+ ++ + I+RD+
Sbjct: 156 P-YYTGDDPLKSK------VAAAMMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDK 208
Query: 232 SLHLNFGIDVINQIKIENPHLWTK-EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAP 290
+H N+ Q K+ + E + +L+E LE AY E + G +
Sbjct: 209 VIH-NYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYELIDLEKAYLREL----YAGFDLA 263
Query: 291 SCEQYMQFI---ANRRCHQIGLEPLF 313
E ++F A + +G E F
Sbjct: 264 --EDAIRFSLYNAGKFLQNLGYESPF 287
>gnl|CDD|162774 TIGR02231, TIGR02231, conserved hypothetical protein. This family
consists of proteins over 500 amino acids long in
Caenorhabditis elegans and several bacteria (Pseudomonas
aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans,
etc.). The function is unknown.
Length = 525
Score = 29.7 bits (67), Expect = 1.0
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 209 LSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
+++ R N VG + + + E L+ G+D I+IE
Sbjct: 386 VNIFRGNGFVGRS-HLENVAPGERFELSLGVD--EGIRIE 422
>gnl|CDD|179678 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.
Length = 450
Score = 29.7 bits (68), Expect = 1.2
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 292 CEQYMQFIANRRCHQIGLEPLFKYTENPFPWMS--EVID-LKKEKNFFE 337
C ++F+ NRR + +E L + E+PFP ++ E I+ L+K FE
Sbjct: 265 CPDDLEFL-NRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFE 312
>gnl|CDD|132120 TIGR03076, near_not_gcvH, Chlamydial GcvH-like protein upstream
region protein. The H protein (GcvH) of the glycine
cleavage system shuttles the methylamine group of
glycine from the P protein to the T protein. Most
Chlamydia but lack the P and T proteins, and have a
single homolog of GcvH that appears deeply split from
canonical GcvH in molecular phylogenetic trees. The
protein family modeled here is observed so far only in
the Chlamydiae, always as part of a two-gene operon,
upstream of the homolog of GcvH. Its function is
unknown.
Length = 686
Score = 28.7 bits (64), Expect = 2.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREV 152
F++ V S+ F + +G+ E E FNMYRE+
Sbjct: 271 TFDQFVSSY-FSF----MGVSESEFFNMYREI 297
>gnl|CDD|177822 PLN02164, PLN02164, sulfotransferase.
Length = 346
Score = 28.7 bits (64), Expect = 2.1
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 299 IANRRCHQIGLEPLFK--------YTENPFPWMSEVIDLKKEKN-FFETRV 340
IANR PL K Y E FP+ V LK + N F T +
Sbjct: 102 IANRSRFDDSSNPLLKRNPHEFVPYIEIDFPFFPSVDVLKDKGNTLFSTHI 152
>gnl|CDD|165451 PHA03180, PHA03180, helicase-primase primase subunit; Provisional.
Length = 1071
Score = 27.1 bits (60), Expect = 6.7
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 77 DERLMIKRNLGFFASSESLVANNIVLAIYRHLSNP 111
+E+ I RN F + +L NI+L + HL
Sbjct: 630 EEQQYINRNEVF---NGNLAIGNIILDVDVHLKQA 661
>gnl|CDD|183909 PRK13237, PRK13237, tyrosine phenol-lyase; Provisional.
Length = 460
Score = 27.0 bits (60), Expect = 7.1
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 182 DQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANK--MVGIAE--QYQYI 227
D+E + VV+EGM Y G A GR + +GI E QY+YI
Sbjct: 274 DEELFDEAKELVVVYEGMPSYGGMA-----GRDMEAMAIGIEESVQYEYI 318
>gnl|CDD|152019 pfam11583, AurF, P-aminobenzoate N-oxygenase AurF. AurF is a
metalloenzyme which is involved in the biosynthesis of
antibiotic aureothin by catalysing the formation of
p-nitrobenzoic acid from p-aminobenzoic acid. AurF is a
non-heme di-iron monooxygenase which creates nitroarenes
via the sequential oxidation of aminoarenes.
Length = 295
Score = 26.9 bits (60), Expect = 9.1
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 93 ESLVANNIVLAIYR---HLSNPE-CRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNM 148
E+++ N + + R + P RQY L + +E H+ FQ I +G G L
Sbjct: 83 ETILVNPVARLLLRGALPVDPPSAHRQYALTEIVDECYHALMFQDAIERIGRLTGPLPPP 142
Query: 149 YR 150
R
Sbjct: 143 PR 144
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.134 0.412
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,763,535
Number of extensions: 362435
Number of successful extensions: 654
Number of sequences better than 10.0: 1
Number of HSP's gapped: 628
Number of HSP's successfully gapped: 24
Length of query: 352
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 258
Effective length of database: 3,963,321
Effective search space: 1022536818
Effective search space used: 1022536818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)