RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate
reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62]
(352 letters)
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia
trachomatis [TaxId: 813]}
Length = 317
Score = 280 bits (717), Expect = 1e-76
Identities = 172/315 (54%), Positives = 237/315 (75%), Gaps = 3/315 (0%)
Query: 10 IQAGEKRVNVDDKRMLNA-RSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALW 68
+ +KRVN++ KR++N + DVNQL+P+KY WAWE YL+ C N+W+PTE+PM D+ LW
Sbjct: 5 LDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELW 64
Query: 69 KSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHS 128
KS + L++DER +I NLGFF+++ESLV NNIVLAI++H++NPE RQYLLRQAFEEAVH+
Sbjct: 65 KS-DRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHT 123
Query: 129 HTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQD 188
HTF YI SLGLDE E+FN Y E +I AK ++ ++ T + P+F T + + QEF+++
Sbjct: 124 HTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKN 183
Query: 189 LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIE 248
L +Y++ EG++FY+GF ILS R NKM+GI EQYQYI+RDE++HLNFGID+IN IK E
Sbjct: 184 LVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEE 243
Query: 249 NPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIG 308
NP +WT E QQ+ ++ A LEI YA + +P+G +GL A Y+Q IA+RR +IG
Sbjct: 244 NPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIG 303
Query: 309 LEPLFKYTENPFPWM 323
L+P++ T+NPFPWM
Sbjct: 304 LKPIYH-TKNPFPWM 317
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli
[TaxId: 562]}
Length = 339
Score = 207 bits (528), Expect = 9e-55
Identities = 70/317 (22%), Positives = 128/317 (40%), Gaps = 26/317 (8%)
Query: 31 VNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFA 90
V + KY + + W P EV + D +++ L + E+ + NL +
Sbjct: 25 VARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQA---LPEHEKHIFISNLKYQT 81
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
+S+ + +A+ +S PE ++ AF E +HS ++ +II ++ D +F+
Sbjct: 82 LLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIV 141
Query: 151 EVPSITAKANWALQY-----------------TQTLSSPSFTTGTKDADQEFLQDLFVFY 193
I +A Y T T++ + T ++ ++ L
Sbjct: 142 TNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSV- 200
Query: 194 VVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLW 253
E + FY FA + M G A+ + I RDE+LHL ++N ++
Sbjct: 201 NALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPE 260
Query: 254 TK----EFQQKSRTMLHEATLLEIAYAHETMPKG-FVGLNAPSCEQYMQFIANRRCHQIG 308
E +Q+ + +A E +A G +GLN QY+++I N R +G
Sbjct: 261 MAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVG 320
Query: 309 LEPLFKYTENPFPWMSE 325
L+ F+ NP PW++
Sbjct: 321 LDLPFQTRSNPIPWINT 337
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 202 bits (515), Expect = 4e-53
Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 26/306 (8%)
Query: 21 DKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERL 80
++ +LN + L P+KY W+ Y A + W E+ + D+ W ++ + ++ER
Sbjct: 50 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNR--MNENERF 107
Query: 81 MIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGL 140
I R L FFA+S+ +V N+V + PE + + Q E +HS T+ +I +
Sbjct: 108 FISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIK 167
Query: 141 DEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFE 197
D LFN +P I KA WAL++ Q + V + E
Sbjct: 168 DPKESEFLFNAIHTIPEIGEKAEWALRWIQD-------------ADALFGERLVAFASIE 214
Query: 198 GMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEF 257
G++F FA I L + M G+ + I RDE LH +F + +K + ++
Sbjct: 215 GVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEK- 273
Query: 258 QQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTE 317
++ EA +E Y + +P +G+NA QY++F+A+R G + +K E
Sbjct: 274 ------IVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYK-VE 326
Query: 318 NPFPWM 323
NPF +M
Sbjct: 327 NPFDFM 332
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 178 bits (453), Expect = 4e-46
Identities = 78/305 (25%), Positives = 134/305 (43%), Gaps = 27/305 (8%)
Query: 19 VDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDE 78
V+D+ +L + P++Y W+ Y A + W EV + D+ W++ L DE
Sbjct: 1 VEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEA---LKPDE 57
Query: 79 RLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSL 138
R I L FFA+S+ +V N+V + + E R + Q E +HS + +I +
Sbjct: 58 RHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTY 117
Query: 139 GLDEG---ELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVV 195
D LFN +P + KA+WAL++ + + V +
Sbjct: 118 IKDPKEREYLFNAIETMPCVKKKADWALRWIGD-------------KEATYGERVVAFAA 164
Query: 196 FEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTK 255
EG++F FA I L + M G+ + I RDE LH +F + + +
Sbjct: 165 VEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRV- 223
Query: 256 EFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKY 315
R ++ A +E + E +P +G+N +QY++F+A+R ++G +F+
Sbjct: 224 ------REIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFR- 276
Query: 316 TENPF 320
ENPF
Sbjct: 277 VENPF 281
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
Length = 285
Score = 176 bits (448), Expect = 2e-45
Identities = 56/282 (19%), Positives = 110/282 (39%), Gaps = 25/282 (8%)
Query: 34 LLPLKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSE 93
+ P+KY W Y + W E+ + D ++ LTDD++ I L SS+
Sbjct: 27 MFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQK---LTDDQKTYIGNLLALSISSD 83
Query: 94 SLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGE--LFNMYRE 151
+LV ++ L NPE + + Q E ++S + ++ + D LF
Sbjct: 84 NLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIAN 143
Query: 152 VPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSL 211
+P + KA + ++ D + V + EG++ +A + L
Sbjct: 144 LPEVKHKAAFIERWI-------------SNDDSLYAERLVAFAAKEGIFQAGNYASMFWL 190
Query: 212 GRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLL 271
M G+A + I RD + +F + ++ + ++ ++ EA +
Sbjct: 191 TDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEK-------IITEAVEI 243
Query: 272 EIAYAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLF 313
E Y ++P G++ S Y++F+A+ G E +
Sbjct: 244 EKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYY 285
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
typhimurium [TaxId: 90371]}
Length = 283
Score = 173 bits (440), Expect = 2e-44
Identities = 53/295 (17%), Positives = 107/295 (36%), Gaps = 28/295 (9%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
++ E + +N W+P +VP+ +D+ W++ L+ E+ + R +++
Sbjct: 9 IQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQT---LSAAEQQLTIRVFTGLTLLDTIQ 65
Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154
++ P L +F EAVH+ ++ I ++L + + E P
Sbjct: 66 NIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPP 125
Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
+ KA L + + + V E FY+GF +
Sbjct: 126 LQRKAQIILAHY---------------VSDEPLKKKIASVFLESFLFYSGFWLPMYFSSR 170
Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
K+ A+ + I+RDE++H + + + +E + + +L E EI
Sbjct: 171 GKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIR 230
Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFK---YTENP--FPWMS 324
Y + + ++ + AN+ +G E LF NP +S
Sbjct: 231 YTEALYAE---TGWVNDVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAALS 282
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 284
Score = 172 bits (436), Expect = 4e-44
Identities = 53/289 (18%), Positives = 107/289 (37%), Gaps = 24/289 (8%)
Query: 37 LKYGWAWEKYLSACNNHWMPTEVPMQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLV 96
+ E + N W+P ++P+ +D+ W +T E+L R +++
Sbjct: 11 IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNK---MTPQEQLATMRVFTGLTLLDTIQ 67
Query: 97 ANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEG--ELFNMYREVPS 154
+++ AF E+VH+ ++ I +L E F E +
Sbjct: 68 GTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQINEAFRWSEENEN 127
Query: 155 ITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRA 214
+ KA + Y + V + E FY+GF + L
Sbjct: 128 LQRKAKIIMSYYN---------------GDDPLKKKVASTLLESFLFYSGFYLPMYLSSR 172
Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIA 274
K+ A+ + I+RDES+H + Q + +E++ + ++++ EI
Sbjct: 173 AKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIE 232
Query: 275 YAHETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPF-PW 322
Y + +G ++++++ AN+ + +G E LF E P
Sbjct: 233 YTEDIYDD--LGWTE-DVKRFLRYNANKALNNLGYEGLFPTDETKVSPA 278
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase
oxygenase subunit TouA {Pseudomonas stutzeri [TaxId:
316]}
Length = 491
Score = 41.4 bits (97), Expect = 1e-04
Identities = 42/221 (19%), Positives = 66/221 (29%), Gaps = 24/221 (10%)
Query: 42 AWEKYLSACNNHWMPTEVPMQDD---------LALWKSKNGLTDDERLM--IKRNLGFFA 90
AWEKY P V +Q + AL + D + ++ + G A
Sbjct: 42 AWEKY-DEPYKITYPEYVSIQREKDSGAYSIKAALERDGFVDRADPGWVSTMQLHFGAIA 100
Query: 91 SSESLVANNIVLAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYR 150
E A+ + R P R +E H Y + + ++
Sbjct: 101 LEE-YAASTAEARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDWAHK 159
Query: 151 EVPSITAKANWALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILS 210
+ WA ++ T D+ + F F F M + G A +
Sbjct: 160 AIH----TNEWAAIAARSFFDDMMMTR--DSVAVSIMLTFAFETGFTNM-QFLGLAADAA 212
Query: 211 LGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPH 251
A A I DES H G + +I +EN
Sbjct: 213 --EAGDHT-FASLISSIQTDESRHAQQGGPSL-KILVENGK 249
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit
{Methylococcus capsulatus [TaxId: 414]}
Length = 512
Score = 28.7 bits (64), Expect = 0.73
Identities = 32/220 (14%), Positives = 57/220 (25%), Gaps = 24/220 (10%)
Query: 54 WMPTEVPMQD----------DLALWKSKNGLTDDERLM--IKRNLGFFASSESLVANNIV 101
M+ +AL + G+ + +K F E A
Sbjct: 49 IAKEYARMEAVKDERQFGSLQVALTRLNAGVRVHPKWNETMKVVSNFLEVGE-YNAIAAT 107
Query: 102 LAIYRHLSNPECRQYLLRQAFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANW 161
++ E + L Q +E H+H Y+ + + T
Sbjct: 108 GMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDA--RRTRTIGP 165
Query: 162 ALQYTQTLSSPSFTTGTKDADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIA 221
+ + + S F +G DA + L V F AN
Sbjct: 166 LWKGMKRVFSDGFISG--DAVECSLNLQLVGEACFTNP-LIVAVT---EWAAANGDEITP 219
Query: 222 EQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKS 261
+ I DE H+ G + I + ++
Sbjct: 220 TVFLSIETDELRHMANGYQTVVSIANDPAS---AKYLNTD 256
>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit,
NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}
Length = 150
Score = 25.6 bits (55), Expect = 5.9
Identities = 13/115 (11%), Positives = 27/115 (23%), Gaps = 10/115 (8%)
Query: 195 VFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWT 254
+F W + ++ + + R + ++V H
Sbjct: 30 IFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEA 89
Query: 255 KEFQQK-----SRTMLHEATLLEIAYAHETMPKGF----VGLNA-PSCEQYMQFI 299
+ L + + E +GL P E + FI
Sbjct: 90 GNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFI 144
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Length = 967
Score = 25.3 bits (55), Expect = 7.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 88 FFASSESLVANNIVLAIYRHLSN 110
FFA E ++ ++ A+Y LSN
Sbjct: 613 FFAGGEDILILQLIRAVYDTLSN 635
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231
{Prochlorococcus marinus [TaxId: 1219]}
Length = 222
Score = 25.1 bits (55), Expect = 9.2
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 227 IMRDESLHLNFG 238
+++DE HLN+G
Sbjct: 134 VVKDEYTHLNYG 145
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.412
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,325,204
Number of extensions: 60992
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 16
Length of query: 352
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,226,816
Effective search space: 326333056
Effective search space used: 326333056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)