Query gi|254780965|ref|YP_003065378.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 229
No_of_seqs 4 out of 6
Neff 2.0
Searched_HMMs 23785
Date Tue May 31 23:01:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780965.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pgc_A Uncharacterized protein 39.8 16 0.00068 16.7 2.6 59 93-154 30-88 (207)
2 1pp9_C Cytochrome B; cytochrom 30.6 16 0.00069 16.6 1.5 113 7-155 40-182 (379)
3 3cx5_C Cytochrome B-C1 complex 26.5 22 0.00092 15.8 1.5 53 7-79 39-91 (385)
4 2qjy_A Cytochrome B; cytochrom 24.2 27 0.0011 15.2 1.6 54 7-80 54-107 (445)
5 1b4u_B LIGA, LIGB, protocatech 22.0 40 0.0017 14.2 2.7 84 40-123 188-278 (302)
6 3b47_A GSU0582, methyl-accepti 20.1 35 0.0015 14.6 1.5 23 170-192 85-110 (134)
7 1vf5_A Cytochrome B6; photosyn 17.9 42 0.0018 14.1 1.5 54 7-80 43-96 (215)
8 2ovw_A Endoglucanase I; glycos 17.8 49 0.0021 13.7 2.0 13 146-158 115-127 (411)
9 3b42_A GSU0935, methyl-accepti 16.8 52 0.0022 13.5 2.0 22 170-191 86-110 (135)
10 2gq1_A Fructose-1,6-bisphospha 14.3 56 0.0024 13.3 1.4 66 115-180 99-180 (332)
No 1
>2pgc_A Uncharacterized protein; JCVI_PEP_1096685590403, metagenomics, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.53A {Uncultured marine organism} SCOP: d.58.4.23
Probab=39.75 E-value=16 Score=16.66 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=28.7
Q ss_pred HHHHHHHCCCCCEEEEEEEEECCCCCEEEEEECCCCCEECHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 77758641770258999755338886038975277621164351276763038437999960
Q gi|254780965|r 93 YVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLR 154 (229)
Q Consensus 93 YV~sf~E~g~vdvatV~YPyRANeN~gT~Lvpt~gssiIdv~d~~la~~~~aDPty~~fika 154 (229)
+...+.+..+.-..-+.+. -.++|.+||.+...=++.=+-++ .-+.+..||.+++|...
T Consensus 30 ~~~~~~~~~Ga~~~~~~~~-~~G~~~gt~~~~~~y~s~~~~~~--~~~~~~~s~~~~~~~~~ 88 (207)
T 2pgc_A 30 YSKDLIDNAGAKGTRFGSI-GTGDHAGSLIFIQFYDDLTGYQK--ALEIQSKSSVFKEIMDS 88 (207)
T ss_dssp HHHHHHHHTCCCCEEEEEE-CSBTTTTCEEEEEEESSHHHHHH--HHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEEEE-ECCCCCCEEEEEEECCCHHHHHH--HHHHHCCCHHHHHHHHH
T ss_conf 9998666248628999998-43798550999996489999999--99985179999999985
No 2
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 1qcr_C* 3l70_C* 2bcc_C* 3bcc_C* ...
Probab=30.64 E-value=16 Score=16.60 Aligned_cols=113 Identities=20% Similarity=0.235 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHH-H
Q ss_conf 478899999999887403578742167652100012745676313002110133578999999733888899879998-5
Q gi|254780965|r 7 IIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQY-L 85 (229)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~se~~vw~gd~~~~~q~~~a~~~d~~~~~Cl~~~m~~tGat~eAl~aa~~-L 85 (229)
..++.++-|+.|++|+.-+.. .-++.-..-.||-|+. .+.|.||..||+-==+..--. +
T Consensus 40 ~~~iQiiTGi~La~~Y~p~~~-------------------~Af~Sv~~I~~~v~~G-wliR~~H~~gas~~f~~~ylH~~ 99 (379)
T 1pp9_C 40 CLILQILTGLFLAMHYTSDTT-------------------TAFSSVTHICRDVNYG-WIIRYMHANGASMFFICLYMHVG 99 (379)
T ss_dssp HHHHHHHHHHHHHTTCCCCTT-------------------THHHHHHHHHHHSTTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHH-------------------HHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999988479915-------------------8999999998447356-99999998789999999999984
Q ss_pred HC-----C-------------------CCHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEECCCCCEECHHHHHHHHH
Q ss_conf 10-----5-------------------74137775864177025899975533888603897527762116435127676
Q gi|254780965|r 86 EK-----Y-------------------LEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQL 141 (229)
Q Consensus 86 ~~-----~-------------------~e~gYV~sf~E~g~vdvatV~YPyRANeN~gT~Lvpt~gssiIdv~d~~la~~ 141 (229)
.+ | .=.|||-.|..|.--+. -++-+..++ ||.--..+.+-
T Consensus 100 R~~~~gsy~~~~~w~~Gv~l~~l~m~~aF~GYvLpwgqmS~w~a---------------tVitnl~~~-iP~~G~~lv~w 163 (379)
T 1pp9_C 100 RGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGA---------------TVITNLLSA-IPYIGTNLVEW 163 (379)
T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHH---------------HHHHGGGGG-STTTHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHH---------------HHHHHHHHH-CCCCCCCEEEE
T ss_conf 68875366772467889999999999998132078863238999---------------999998886-36577621377
Q ss_pred H-----CCCHHHHHHHHHC
Q ss_conf 3-----0384379999608
Q gi|254780965|r 142 Y-----DSSPIAKDFVLRN 155 (229)
Q Consensus 142 ~-----~aDPty~~fikan 155 (229)
+ -++||-+.|-..|
T Consensus 164 i~Gg~~v~~~TL~RFf~lH 182 (379)
T 1pp9_C 164 IWGGFSVDKATLTRFFAFH 182 (379)
T ss_dssp HHTSSSSCHHHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHH
T ss_conf 7757437862166899999
No 3
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=26.50 E-value=22 Score=15.83 Aligned_cols=53 Identities=13% Similarity=0.253 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf 4788999999998874035787421676521000127456763130021101335789999997338888998
Q gi|254780965|r 7 IIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEAL 79 (229)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~se~~vw~gd~~~~~q~~~a~~~d~~~~~Cl~~~m~~tGat~eAl 79 (229)
..++.++-|+.|++|++.+. +..++.-..-++|-++. -+.|.||..||+-=-+
T Consensus 39 ~~~iqiitGi~L~~~Y~p~~-------------------~~Af~Sv~~I~~~v~~G-w~iR~~H~~gas~~f~ 91 (385)
T 3cx5_C 39 CLVIQIVTGIFMAMHYSSNI-------------------ELAFSSVEHIMRDVHNG-YILRYLHANGASFFFM 91 (385)
T ss_dssp HHHHHHHHHHHHHTTCCCST-------------------TTHHHHHHHHHHTSTTH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCH-------------------HHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHH
T ss_conf 99999999999999977990-------------------67999999998006038-9999888867699999
No 4
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix rieske; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C*
Probab=24.18 E-value=27 Score=15.23 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 47889999999988740357874216765210001274567631300211013357899999973388889987
Q gi|254780965|r 7 IIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALR 80 (229)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~se~~vw~gd~~~~~q~~~a~~~d~~~~~Cl~~~m~~tGat~eAl~ 80 (229)
..++.++.|+.|++|+.-+.. .-|..-.--.+|-|+. -++|.||..||+.=-+.
T Consensus 54 ~~~iqiitG~~L~~~Y~p~~~-------------------~Af~Sv~~i~~~v~~G-wliR~~H~~gAs~~f~~ 107 (445)
T 2qjy_A 54 CLVLQIVTGIVLAMHYTPHVD-------------------LAFASVEHIMRNVNGG-FMLRYLHANGASLFFIA 107 (445)
T ss_dssp HHHHHHHHHHHHHTTCCCSTT-------------------THHHHHHHHHHTSTTH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCH-------------------HHHHHHHHHHCCCCCH-HHHHHHHHCCCHHHHHH
T ss_conf 999999999999999869925-------------------7999999997347542-74765020133689999
No 5
>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B
Probab=21.99 E-value=40 Score=14.22 Aligned_cols=84 Identities=15% Similarity=0.123 Sum_probs=42.7
Q ss_pred EECCCHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH-HHHH----HHCCCCCEEEEEEEE--
Q ss_conf 012745676313002110133578999999733888899879998510574137-7758----641770258999755--
Q gi|254780965|r 40 VWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGY-VSSY----RKEALIGIVEVQYPY-- 112 (229)
Q Consensus 40 vw~gd~~~~~q~~~a~~~d~~~~~Cl~~~m~~tGat~eAl~aa~~L~~~~e~gY-V~sf----~E~g~vdvatV~YPy-- 112 (229)
+=.|++-....+.+....||.||.-+.+.|.+.-..-.+..-.+.++..|+-|+ +-+| --++....-...|.|
T Consensus 188 iaSGgLSH~l~~p~~~~~~~efD~~~l~~l~~~~~~~~~~~~~~~~~~aG~~g~E~r~wi~~~gAl~~~~~~~~~y~~~p 267 (302)
T 1b4u_B 188 WGTGGMSHQLQGPRAGLINKEFDLNFIDKLISDPEELSKMPHIQYLRESGSEGVELVMWLIMRGALPEKVRDLYTFYHIP 267 (302)
T ss_dssp EEECCSSCCCSSTTTTBCCHHHHHHHHHHHHHCHHHHTTCCHHHHHHHHCTTGGGGHHHHHHHHTSCSCEEEEEEEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEEC
T ss_conf 97173325799887888898999999999844978777079799999860130889999999986688766368997324
Q ss_pred ECCCCCEEEEE
Q ss_conf 33888603897
Q gi|254780965|r 113 RANENSGTLLI 123 (229)
Q Consensus 113 RANeN~gT~Lv 123 (229)
..++..+.-+.
T Consensus 268 ~~~tG~g~~~~ 278 (302)
T 1b4u_B 268 ASNTALGAMIL 278 (302)
T ss_dssp ETTEEEEEEEE
T ss_pred CCCEEEEEEEE
T ss_conf 32010379997
No 6
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=20.06 E-value=35 Score=14.57 Aligned_cols=23 Identities=35% Similarity=0.703 Sum_probs=15.2
Q ss_pred CCCCCEEEEEEEEECC---CCCCCHH
Q ss_conf 6877807899996227---7533144
Q gi|254780965|r 170 SHKDGLIELIFSYPLR---SCHGCED 192 (229)
Q Consensus 170 T~e~Ggqrl~F~yPLR---dCHaC~d 192 (229)
+-++|...|-+.+|+. .|+.|-+
T Consensus 85 ~~~~g~~~l~~~~Pi~n~~~Cl~CH~ 110 (134)
T 3b47_A 85 HKVDGRHVLSFIVPLANEVRCQSCHE 110 (134)
T ss_dssp EC---CCEEEEEEEEECCTTGGGTSC
T ss_pred EECCCCEEEEEEEEECCCCHHHHCCC
T ss_conf 93499579999986517520454069
No 7
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=17.86 E-value=42 Score=14.09 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 47889999999988740357874216765210001274567631300211013357899999973388889987
Q gi|254780965|r 7 IIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALR 80 (229)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~se~~vw~gd~~~~~q~~~a~~~d~~~~~Cl~~~m~~tGat~eAl~ 80 (229)
..++.++.|+.|++|++-+... -++.-..-.+|.++ --+.|.+|.-||+.=-+.
T Consensus 43 ~f~iqiiTGi~L~~~Y~p~~~~-------------------A~~Sv~~I~~~v~~-G~liR~lH~~gAs~~~~~ 96 (215)
T 1vf5_A 43 CFLIQFATGFAMTFYYKPTVTE-------------------AYASVQYIMNEVSF-GWLIRSIHRWSASMMVLM 96 (215)
T ss_dssp HHHHHHHHHHHHTTTCCCSTTT-------------------HHHHHHHHHTTSTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCC-------------------HHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999997126051-------------------77799999841823-899999889899999999
No 8
>2ovw_A Endoglucanase I; glycosyl hydrolase, complexed with cellobiose, glycosylated protein; HET: NAG CBI; 2.30A {Fusarium oxysporum} SCOP: b.29.1.10 PDB: 3ovw_A* 4ovw_A* 1ovw_A*
Probab=17.80 E-value=49 Score=13.65 Aligned_cols=13 Identities=8% Similarity=-0.077 Sum_probs=8.2
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 4379999608884
Q gi|254780965|r 146 PIAKDFVLRNPGV 158 (229)
Q Consensus 146 Pty~~fikanP~i 158 (229)
-+|+.|.+.+-|.
T Consensus 115 ~~Y~~f~Llg~Ef 127 (411)
T 2ovw_A 115 KKYEMLHLTGTEF 127 (411)
T ss_dssp SSBCCBCCTTCEE
T ss_pred CCEEEEEECCCEE
T ss_conf 8357899428678
No 9
>3b42_A GSU0935, methyl-accepting chemotaxis protein, putative; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 1.90A {Geobacter sulfurreducens}
Probab=16.83 E-value=52 Score=13.51 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=15.2
Q ss_pred CCCCCEEEEEEEEECCC---CCCCH
Q ss_conf 68778078999962277---53314
Q gi|254780965|r 170 SHKDGLIELIFSYPLRS---CHGCE 191 (229)
Q Consensus 170 T~e~Ggqrl~F~yPLRd---CHaC~ 191 (229)
+..+|...|-+.+|+.- |..|-
T Consensus 86 ~~~~g~~~l~~~~Pi~ne~~C~~CH 110 (135)
T 3b42_A 86 ETLDGKRTLSLVLPFPNEQRCQSCH 110 (135)
T ss_dssp EEETTEEEEEEEEEEECCGGGGGTS
T ss_pred EECCCCEEEEEEEEECCCCHHHHCC
T ss_conf 9439967999998403761066543
No 10
>2gq1_A Fructose-1,6-bisphosphatase; allosteric activator site, quaternary conformation, hydrolase; 1.45A {Escherichia coli} PDB: 2owz_A* 2ox3_A* 2q8m_A* 2qvr_A*
Probab=14.27 E-value=56 Score=13.28 Aligned_cols=66 Identities=21% Similarity=0.374 Sum_probs=35.8
Q ss_pred CCCCEEEEE---ECCCCCEECHHHHH--HHHHHC------CCHHHHHHH-HHCCCC----CCCCCCCCCCCCCCCCEEEE
Q ss_conf 888603897---52776211643512--767630------384379999-608884----11267631234687780789
Q gi|254780965|r 115 NENSGTLLI---PTVGSHIIDINDSS--VHQLYD------SSPIAKDFV-LRNPGV----FPYSAGHFVKSSHKDGLIEL 178 (229)
Q Consensus 115 NeN~gT~Lv---pt~gssiIdv~d~~--la~~~~------aDPty~~fi-kanP~i----~P~gag~sav~T~e~Ggqrl 178 (229)
+..+|.|+| |--|||+||+|-+- |=-+|+ .++.-++|+ .-+-++ .=||+.-..+-|...|..+|
T Consensus 99 ~~~~g~y~VafDPLDGSSnId~N~~VGTIFgI~~~~~~~~~~~~~~~~Lq~G~~qvAAGY~lYGp~T~lv~t~g~gv~~F 178 (332)
T 2gq1_A 99 GCEHAKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVVYGSSTMLVYTTGCGVHAF 178 (332)
T ss_dssp TCTTCCEEEEEEEEETGGGGGGTCCEEEEEEEEECCSCTTSCCCHHHHCCCGGGCSEEEEEEESSSEEEEEESSSCEEEE
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCHHHEEEEEEEECCCEEEEEEECCCEEEE
T ss_conf 58887679997577773334668641258999734777788877788626550210789889846359999977962279
Q ss_pred EE
Q ss_conf 99
Q gi|254780965|r 179 IF 180 (229)
Q Consensus 179 ~F 180 (229)
.+
T Consensus 179 tL 180 (332)
T 2gq1_A 179 TY 180 (332)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
Done!