Query gi|254780965|ref|YP_003065378.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 229 No_of_seqs 4 out of 6 Neff 2.0 Searched_HMMs 13730 Date Wed Jun 1 10:57:03 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780965.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1q90b_ f.21.1.2 (B:) Cytochro 30.2 9.1 0.00066 16.7 1.3 54 7-80 40-93 (212) 2 d1ppjc2 f.21.1.2 (C:15-260) Mi 28.7 11 0.00078 16.3 1.5 113 7-155 26-168 (246) 3 d3cx5c2 f.21.1.2 (C:1-261) Mit 24.2 16 0.0011 15.3 1.6 53 7-79 39-91 (261) 4 d1nh2d2 b.56.1.1 (D:55-121) Sm 21.9 5.1 0.00037 18.3 -1.3 21 38-58 5-25 (67) 5 d3ovwa_ b.29.1.10 (A:) Cellobi 18.8 27 0.002 13.8 1.9 14 145-158 114-127 (400) 6 d1st6a3 a.24.9.1 (A:253-371) V 15.3 33 0.0024 13.3 1.7 27 64-90 82-109 (119) 7 d3c96a2 d.16.1.2 (A:183-293) M 12.0 41 0.003 12.7 2.0 56 105-160 32-108 (111) 8 d2ff4a2 a.118.8.3 (A:105-283) 11.9 41 0.003 12.7 2.2 43 45-87 87-129 (179) 9 d1nvpd2 b.56.1.1 (D:54-99) Sma 11.8 13 0.00094 15.8 -1.3 21 38-58 2-22 (46) 10 d2exna1 b.165.1.1 (A:1-128) Hy 11.6 29 0.0021 13.6 0.5 11 208-218 107-117 (128) No 1 >d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]} Probab=30.17 E-value=9.1 Score=16.72 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=35.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHH Q ss_conf 47889999999988740357874216765210001274567631300211013357899999973388889987 Q gi|254780965|r 7 IIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALR 80 (229) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~se~~vw~gd~~~~~q~~~a~~~d~~~~~Cl~~~m~~tGat~eAl~ 80 (229) ..++.++.|+.|+||++-+.. .-++.-..-++|-++. ++.|.+|..||+.=-+. T Consensus 40 ~~~iqi~TGi~L~~~Y~p~~~-------------------~A~~Sv~~I~~~v~~G-~liR~lH~~gAs~~~~~ 93 (212) T d1q90b_ 40 CFLVQVATGFAMTFYYRPTVA-------------------EAFASVQYIMTDVNFG-WLIRSIHRWSASMMVLM 93 (212) T ss_dssp HHHHHHHHHHHHTTTCCCSTT-------------------THHHHHHHHHHTSTTH-HHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHCCCC-HHHCCCCCCCCHHHHHH T ss_conf 999999999999999971003-------------------7788999985447876-52233002023589999 No 2 >d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Probab=28.74 E-value=11 Score=16.27 Aligned_cols=113 Identities=20% Similarity=0.242 Sum_probs=58.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHH-HHH Q ss_conf 4788999999998874035787421676521000127456763130021101335789999997338888998799-985 Q gi|254780965|r 7 IIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAA-QYL 85 (229) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~se~~vw~gd~~~~~q~~~a~~~d~~~~~Cl~~~m~~tGat~eAl~aa-~~L 85 (229) ..++.++.|+.|++|+.-+++ .-+..-.--.+|-++. .+.|++|..||+-=-+.+- .++ T Consensus 26 ~~~iqiiTGi~L~~~Y~p~~~-------------------~A~~Sv~~i~~~v~~G-~~iR~~H~~gas~~~~~~~lHm~ 85 (246) T d1ppjc2 26 CLILQILTGLFLAMHYTSDTT-------------------TAFSSVTHICRDVNYG-WIIRYMHANGASMFFICLYMHVG 85 (246) T ss_dssp HHHHHHHHHHHHHTTCCCCTT-------------------THHHHHHHHHHHSTTH-HHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCHH-------------------HHHHHHHHHCCCCCCC-HHHCCHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999759937-------------------9999999843745576-34401337489999999999998 Q ss_pred HC-----C-------------------CCHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEECCCCCEECHHHHHHHHH Q ss_conf 10-----5-------------------74137775864177025899975533888603897527762116435127676 Q gi|254780965|r 86 EK-----Y-------------------LEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQL 141 (229) Q Consensus 86 ~~-----~-------------------~e~gYV~sf~E~g~vdvatV~YPyRANeN~gT~Lvpt~gssiIdv~d~~la~~ 141 (229) .+ | .=.|||-.|..+.-- ++.++-+..++ ||.--..+... T Consensus 86 r~~~~~sy~~~~~w~~G~~l~~l~m~~af~GY~Lpw~qms~w---------------a~~V~t~l~~~-iP~iG~~l~~w 149 (246) T d1ppjc2 86 RGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFW---------------GATVITNLLSA-IPYIGTNLVEW 149 (246) T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHH---------------HHHHHHGGGGG-STTTHHHHHHH T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHH---------------HHHHHHHHHHH-HHHHHHHHHHH T ss_conf 888715865458999999999999999880134788513689---------------99999999999-99878877864 Q ss_pred HC-----CCHHHHHHHHHC Q ss_conf 30-----384379999608 Q gi|254780965|r 142 YD-----SSPIAKDFVLRN 155 (229) Q Consensus 142 ~~-----aDPty~~fikan 155 (229) +. .+||-+.|--.| T Consensus 150 i~GG~~v~~~TL~RFf~lH 168 (246) T d1ppjc2 150 IWGGFSVDKATLTRFFAFH 168 (246) T ss_dssp HHTSSSSCHHHHHHHHHHH T ss_pred HCCCCCCCCCHHHHHHHHH T ss_conf 0178607741688999999 No 3 >d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=24.24 E-value=16 Score=15.26 Aligned_cols=53 Identities=9% Similarity=0.228 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCHHHH Q ss_conf 4788999999998874035787421676521000127456763130021101335789999997338888998 Q gi|254780965|r 7 IIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEAL 79 (229) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~se~~vw~gd~~~~~q~~~a~~~d~~~~~Cl~~~m~~tGat~eAl 79 (229) ..++.++.|+.|++|++-+.. +++ +.-..-++|-++ -++.|.+|..||+-=-+ T Consensus 39 ~~~iqiiTGi~L~~~Y~p~~~------------------~A~-~Sv~~i~~~v~~-Gw~iR~~H~~ga~~~~~ 91 (261) T d3cx5c2 39 CLVIQIVTGIFMAMHYSSNIE------------------LAF-SSVEHIMRDVHN-GYILRYLHANGASFFFM 91 (261) T ss_dssp HHHHHHHHHHHHHTTCCCSTT------------------THH-HHHHHHHHTSTT-HHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHEECCCHH------------------HHH-HHHHHHHHHHCC-CHHHHHCCCCCHHHHHH T ss_conf 999999999998710129828------------------999-999999745405-82642000221999999 No 4 >d1nh2d2 b.56.1.1 (D:55-121) Small chain TOA2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=21.85 E-value=5.1 Score=18.28 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=17.3 Q ss_pred EEEECCCHHHHHCCCCHHHCC Q ss_conf 000127456763130021101 Q gi|254780965|r 38 KAVWKGDSETYFQCKRAHEFD 58 (229) Q Consensus 38 ~~vw~gd~~~~~q~~~a~~~d 58 (229) +.-.||+|.|||-|.+--||= T Consensus 5 KltfKG~L~TYRFCDnVWTFi 25 (67) T d1nh2d2 5 KLTVKGNLDTYGFCDDVWTFI 25 (67) T ss_dssp EEEEEEEEEEEEEETTEEEEE T ss_pred EEEEEEEECCEECCCCEEEEE T ss_conf 589976001100035377899 No 5 >d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase, Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId: 5507]} Probab=18.79 E-value=27 Score=13.79 Aligned_cols=14 Identities=7% Similarity=-0.069 Sum_probs=8.8 Q ss_pred CHHHHHHHHHCCCC Q ss_conf 84379999608884 Q gi|254780965|r 145 SPIAKDFVLRNPGV 158 (229) Q Consensus 145 DPty~~fikanP~i 158 (229) +-+|+.|.+.+-|. T Consensus 114 ~~~Yqmf~Llg~Ef 127 (400) T d3ovwa_ 114 KKKYEMLHLTGTEF 127 (400) T ss_dssp SSSBCEECCTTCEE T ss_pred CCCEEEEEECCCEE T ss_conf 77357899338678 No 6 >d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Probab=15.33 E-value=33 Score=13.27 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=20.1 Q ss_pred HHHHHHHHC-CCCHHHHHHHHHHHCCCC Q ss_conf 999999733-888899879998510574 Q gi|254780965|r 64 CIITSIKKT-GGTQEALRAAQYLEKYLE 90 (229) Q Consensus 64 Cl~~~m~~t-Gat~eAl~aa~~L~~~~e 90 (229) -|.+--++| |.||+|...|+++...+. T Consensus 82 qLadLr~~G~G~sPeA~~lA~qi~~kL~ 109 (119) T d1st6a3 82 QLADLRARGQGATPMAMQKAQQVSQGLD 109 (119) T ss_dssp HHHHHTTTTCCCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 9999998389999899999999999999 No 7 >d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Probab=11.99 E-value=41 Score=12.68 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=29.3 Q ss_pred EEEEEEEEECCCC-CEEEEE--ECCC------------CCEECHHHHHHHHHHCC-CHH---HHHHHHHCCCC--CC Q ss_conf 5899975533888-603897--5277------------62116435127676303-843---79999608884--11 Q gi|254780965|r 105 IVEVQYPYRANEN-SGTLLI--PTVG------------SHIIDINDSSVHQLYDS-SPI---AKDFVLRNPGV--FP 160 (229) Q Consensus 105 vatV~YPyRANeN-~gT~Lv--pt~g------------ssiIdv~d~~la~~~~a-DPt---y~~fikanP~i--~P 160 (229) --.|.||.+.|+. .|..|+ +... +---+.+..-+...+++ +|. ..+++.++|.+ || T Consensus 32 ~~~V~YPi~~~~~~~G~~liN~Va~v~~~~~~~~~~~e~W~~~g~~~el~~~F~~W~~~~~di~~LI~~~~~i~~wp 108 (111) T d3c96a2 32 SRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYP 108 (111) T ss_dssp CEEEEEECCHHHHTTTCEEEEEEEEEEHHHHCCCCSSCCTTCBCCHHHHHHHHTTCCBTTBCHHHHHHTCSEEEEEE T ss_pred CEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECC T ss_conf 66999746899877761268999998046556788879865536999999987589974303999997182200165 No 8 >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Probab=11.91 E-value=41 Score=12.66 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=29.5 Q ss_pred HHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHC Q ss_conf 5676313002110133578999999733888899879998510 Q gi|254780965|r 45 SETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEK 87 (229) Q Consensus 45 ~~~~~q~~~a~~~d~~~~~Cl~~~m~~tGat~eAl~aa~~L~~ 87 (229) +..|.+.-..+..+|+.-..+.++..+.|-..||+++-+.+.. T Consensus 87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179) T d2ff4a2 87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179) T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 9999999984985199999999999985579999999999999 No 9 >d1nvpd2 b.56.1.1 (D:54-99) Small chain TOA2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=11.83 E-value=13 Score=15.79 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=15.4 Q ss_pred EEEECCCHHHHHCCCCHHHCC Q ss_conf 000127456763130021101 Q gi|254780965|r 38 KAVWKGDSETYFQCKRAHEFD 58 (229) Q Consensus 38 ~~vw~gd~~~~~q~~~a~~~d 58 (229) +.-.||.++|||-|.+--||- T Consensus 2 k~tfKG~L~tYRfCDnVWTFi 22 (46) T d1nvpd2 2 RVNFRGSLNTYRFCDNVWTFV 22 (46) T ss_dssp EEEEEEEEEEEEEETTEEEEE T ss_pred CEEEEEEEEEECCCCCEEEEE T ss_conf 438978860111678587899 No 10 >d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]} Probab=11.65 E-value=29 Score=13.60 Aligned_cols=11 Identities=9% Similarity=-0.037 Sum_probs=4.7 Q ss_pred EEEEEEEEEEE Q ss_conf 10013566640 Q gi|254780965|r 208 FIGRKVFGIRN 218 (229) Q Consensus 208 FIG~kV~~V~~ 218 (229) |.|+.+-+||. T Consensus 107 ~LG~~~rLv~~ 117 (128) T d2exna1 107 HAGVPCRILKV 117 (128) T ss_dssp HTCSSEEEEEE T ss_pred HHCCCEEEEEE T ss_conf 84995599997 Done!