BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780965|ref|YP_003065378.1| hypothetical protein
CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62]
         (229 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780965|ref|YP_003065378.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040642|gb|ACT57438.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 229

 Score =  475 bits (1222), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN 60
           MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN
Sbjct: 1   MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN 60

Query: 61  FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT 120
           FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT
Sbjct: 61  FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT 120

Query: 121 LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF 180
           LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF
Sbjct: 121 LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF 180

Query: 181 SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI 229
           SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI
Sbjct: 181 SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI 229


>gi|315122772|ref|YP_004063261.1| hypothetical protein CKC_05135 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496174|gb|ADR52773.1| hypothetical protein CKC_05135 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 213

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/215 (35%), Positives = 113/215 (52%), Gaps = 17/215 (7%)

Query: 7   IIILLVLVGVILAFYFQQSSTPQNHLL-FFSEKAVWKGDSETYFQCKRAHEFDENFDNCI 65
           + I LVL+        ++ + P  H     +EK+VW  D     +C       E  D C+
Sbjct: 9   LFITLVLISCDKKNVQKKENAPPPHSASVINEKSVWHDDLAN--KCASY----ETRDICL 62

Query: 66  ITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPT 125
           I  I+K+G   EAL+A QYL K  E GYV S+RKE  IGI E++YP+RAN N+ TLLIP 
Sbjct: 63  IKEIEKSGSI-EALKAVQYLNKTREMGYVYSFRKEGPIGIAEIEYPFRANTNTTTLLIPP 121

Query: 126 VGSHIIDINDSSVHQLYD---SSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSY 182
            G  I          +YD   +S +  DF  ++P      +   +K+   +  IE IFS+
Sbjct: 122 AGKPIY------TEDIYDDLLTSKVWLDFKKQHPYSNIQDSAVLMKTEKNNDDIEFIFSF 175

Query: 183 PLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIR 217
            + +CHGCE+   + I+YKFT +G FI   +  ++
Sbjct: 176 RVGTCHGCEETARVYISYKFTHEGVFIKNNILYVK 210


>gi|194367068|ref|YP_002029678.1| hypothetical protein Smal_3296 [Stenotrophomonas maltophilia
           R551-3]
 gi|194349872|gb|ACF52995.1| hypothetical protein Smal_3296 [Stenotrophomonas maltophilia
           R551-3]
          Length = 227

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 7/183 (3%)

Query: 33  LFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPG 92
           + +SE  VW GD     Q + A   D     C+  +++  G + +A+ AA+ L    E  
Sbjct: 47  MRWSEAVVWDGDLNACRQGENAATRD-----CLRDAMRAGGASADAITAAEQLSSGGELA 101

Query: 93  YVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFV 152
           YV+++ +   +GI  V+YP+RAN N GT L+   G   ID++   +     + P  ++ +
Sbjct: 102 YVTAWHENEGLGIATVEYPFRANTNEGTRLV-DAGGKRIDVDAVQLDDTLRADPTVQELL 160

Query: 153 LRNPGVFPYSAGHFVKSSHKD-GLIELIFSYPLRSCHGCEDIGFMDIAYKFTTKGAFIGR 211
             NP   P++      +S  D G I L++  PLR CH C D+G + IAY F  K  FIG+
Sbjct: 161 KANPQATPFAPAQSAGASPLDNGGIRLLYRTPLRDCHACPDVGQLQIAYDFDAKRNFIGQ 220

Query: 212 KVF 214
           +V 
Sbjct: 221 QVV 223


>gi|190575727|ref|YP_001973572.1| hypothetical protein Smlt3880 [Stenotrophomonas maltophilia K279a]
 gi|190013649|emb|CAQ47284.1| hypothetical protein Smlt3880 [Stenotrophomonas maltophilia K279a]
          Length = 227

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 7/183 (3%)

Query: 33  LFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPG 92
           + +SE  VW GD     Q + A   D     C+  +++  G + EA+ AA+ L    E  
Sbjct: 47  MRWSEAVVWDGDLNACRQGENAATRD-----CLRDAMRAGGASAEAITAAEQLSSAGELA 101

Query: 93  YVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFV 152
           YV+++ +   +GI  V+YP+RAN N GT L+   G   ID++   +     + P  ++ +
Sbjct: 102 YVTAWHENEGLGIATVEYPFRANTNEGTRLVDASGKR-IDVDAVQLDDTLRADPAVQELL 160

Query: 153 LRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTTKGAFIGR 211
             NP   P++      ++  + G I L++  PLR CH C D+G + IAY F  K  FIG+
Sbjct: 161 KANPQATPFAPAQSAGATPLEGGGIRLLYRTPLRDCHACPDVGQLQIAYDFDAKRNFIGQ 220

Query: 212 KVF 214
           +V 
Sbjct: 221 QVV 223


>gi|254523697|ref|ZP_05135752.1| hypothetical protein SSKA14_2831 [Stenotrophomonas sp. SKA14]
 gi|219721288|gb|EED39813.1| hypothetical protein SSKA14_2831 [Stenotrophomonas sp. SKA14]
          Length = 227

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 7/183 (3%)

Query: 33  LFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPG 92
           + +SE  VW GD     Q + A   D     C+  ++   G + +A+ AA+ L    E  
Sbjct: 47  MRWSEAVVWDGDLNACRQGENAATRD-----CLRDAMHAGGASADAITAAEQLSTGGELA 101

Query: 93  YVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFV 152
           YV+++ +   +G+  V+YP+RAN N GT L+   G   ID++   +     + P  ++ +
Sbjct: 102 YVTAWHESDGLGVATVEYPFRANTNEGTRLVDASGKR-IDVDAVQLDDTLRADPTVQELL 160

Query: 153 LRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTTKGAFIGR 211
             NP   P++      ++  ++G I L++  PLR CH C D+G + +AY F  K  FIG+
Sbjct: 161 KANPQATPFAPAQSAGATPLENGGIRLLYRTPLRDCHACPDVGQLQMAYDFDAKRNFIGQ 220

Query: 212 KVF 214
           +V 
Sbjct: 221 QVV 223


>gi|303246407|ref|ZP_07332686.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
 gi|302492117|gb|EFL51992.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
          Length = 212

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 16/186 (8%)

Query: 35  FSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYV 94
              K VWK     +  C +  +   +  +C+   +++TG T EAL   + L+     GY+
Sbjct: 31  IGPKGVWKLPEAAWTDCLQKAQ---DATDCLARIMRQTGATPEALAVNKMLDGE---GYM 84

Query: 95  SSYRKEALIGIVEVQYPYRANENSGTLLI---PTVGSHIIDINDSSVHQLYDSSPIAKDF 151
            ++++   + +  + +P RAN N+ T L+   PT+ S  I+  D  +     + P     
Sbjct: 85  ETFQEMGRVDVAVMVFPLRANTNAVTYLVNGSPTLVSSEIEPADLPLA----ADPTYAAL 140

Query: 152 VLRNPGV--FPYSAGHFVKSSHKDGLIELIFSYP-LRSCHGCEDIGFMDIAYKFTTKGAF 208
              +P +  +P   G     +   G    +F+YP L  CH C  +G   ++  F   G +
Sbjct: 141 QKAHPELMFWPTGEGPSAVDTPPGGGQGFVFTYPLLNGCHACAVLGQALLSLDFGPDGTY 200

Query: 209 IGRKVF 214
            G ++ 
Sbjct: 201 HGPRLL 206


>gi|300789946|ref|YP_003770237.1| thioesterase [Amycolatopsis mediterranei U32]
 gi|299799460|gb|ADJ49835.1| thioesterase [Amycolatopsis mediterranei U32]
          Length = 248

 Score = 41.6 bits (96), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 17/128 (13%)

Query: 52  KRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYP 111
           +R HE D   D  ++  +K+ GGT  A+   + +   + P   S Y+   L       Y 
Sbjct: 132 ERIHEKD---DEALLAEVKRLGGTDTAVLDDEDIRSLVLPALRSDYKAAEL-------YH 181

Query: 112 YRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSH 171
           YR   + G  ++  VG     + ++   Q  + +  + +F L+      Y  GHF  + H
Sbjct: 182 YRPGPDVGCPIVALVGDQDPKVTEAEARQWAERT--SGEFELKT-----YPGGHFYLNDH 234

Query: 172 KDGLIELI 179
              +I LI
Sbjct: 235 AAAIIRLI 242


>gi|269123914|ref|YP_003306491.1| hypothetical protein Smon_1159 [Streptobacillus moniliformis DSM
           12112]
 gi|268315240|gb|ACZ01614.1| domain of unknown function DUF1738 [Streptobacillus moniliformis
           DSM 12112]
          Length = 389

 Score = 36.6 bits (83), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 20  FYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEAL 79
           + F +     + L   SEK + + +++   + K+  EF++ F N I T I +    ++  
Sbjct: 100 WSFPKEKLTDDKLKELSEKEIKRIENKIALRVKKGWEFEDGFGNKIATPIDRN--HKDFN 157

Query: 80  RAAQYLEKYLEPGYVSSYRKEALIGIVEVQYP 111
             A+Y+E    PGY + +  + + G+ E +YP
Sbjct: 158 LVAKYVENTPLPGYFNVFNAKDIEGLEEFKYP 189


>gi|147778603|emb|CAN67042.1| hypothetical protein VITISV_037621 [Vitis vinifera]
          Length = 492

 Score = 35.4 bits (80), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 70  KKTGGTQEALRAAQYL-EKYLEPGYVSSY-RKEALIGIVEVQYPYRANENSGTLLIPTVG 127
           K+ G T EA R+  YL EK ++ G++  Y R +A I           N NSGTL IP   
Sbjct: 413 KEHGQTTEACRSLHYLVEKLIKVGHLKQYVRSDATIRDTS------RNHNSGTLRIPAAP 466

Query: 128 SHIID-INDSSVHQLYDS 144
             II+ I+   + + YDS
Sbjct: 467 KAIINYIHRGPLDEEYDS 484


Searching..................................................done


Results from round 2




>gi|254780965|ref|YP_003065378.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040642|gb|ACT57438.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 229

 Score =  357 bits (915), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN 60
           MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN
Sbjct: 1   MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN 60

Query: 61  FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT 120
           FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT
Sbjct: 61  FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT 120

Query: 121 LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF 180
           LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF
Sbjct: 121 LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF 180

Query: 181 SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI 229
           SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI
Sbjct: 181 SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI 229


>gi|315122772|ref|YP_004063261.1| hypothetical protein CKC_05135 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496174|gb|ADR52773.1| hypothetical protein CKC_05135 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 213

 Score =  265 bits (676), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 75/212 (35%), Positives = 113/212 (53%), Gaps = 11/212 (5%)

Query: 7   IIILLVLVGVILAFYFQQSSTPQNHLL-FFSEKAVWKGDSETYFQCKRAHEFDENFDNCI 65
           + I LVL+        ++ + P  H     +EK+VW  D     +C       E  D C+
Sbjct: 9   LFITLVLISCDKKNVQKKENAPPPHSASVINEKSVWHDDLAN--KCASY----ETRDICL 62

Query: 66  ITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPT 125
           I  I+K+G   EAL+A QYL K  E GYV S+RKE  IGI E++YP+RAN N+ TLLIP 
Sbjct: 63  IKEIEKSGSI-EALKAVQYLNKTREMGYVYSFRKEGPIGIAEIEYPFRANTNTTTLLIPP 121

Query: 126 VGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPLR 185
            G  I   +   ++    +S +  DF  ++P      +   +K+   +  IE IFS+ + 
Sbjct: 122 AGKPIYTED---IYDDLLTSKVWLDFKKQHPYSNIQDSAVLMKTEKNNDDIEFIFSFRVG 178

Query: 186 SCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIR 217
           +CHGCE+   + I+YKFT +G FI   +  ++
Sbjct: 179 TCHGCEETARVYISYKFTHEGVFIKNNILYVK 210


>gi|194367068|ref|YP_002029678.1| hypothetical protein Smal_3296 [Stenotrophomonas maltophilia
           R551-3]
 gi|194349872|gb|ACF52995.1| hypothetical protein Smal_3296 [Stenotrophomonas maltophilia
           R551-3]
          Length = 227

 Score =  252 bits (642), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 7/191 (3%)

Query: 25  SSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQY 84
                +  + +SE  VW GD     Q + A   D     C+  +++  G + +A+ AA+ 
Sbjct: 39  EKAAADGKMRWSEAVVWDGDLNACRQGENAATRD-----CLRDAMRAGGASADAITAAEQ 93

Query: 85  LEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDS 144
           L    E  YV+++ +   +GI  V+YP+RAN N GT L+   G   ID++   +     +
Sbjct: 94  LSSGGELAYVTAWHENEGLGIATVEYPFRANTNEGTRLVD-AGGKRIDVDAVQLDDTLRA 152

Query: 145 SPIAKDFVLRNPGVFPYSAGHFVKSSHKD-GLIELIFSYPLRSCHGCEDIGFMDIAYKFT 203
            P  ++ +  NP   P++      +S  D G I L++  PLR CH C D+G + IAY F 
Sbjct: 153 DPTVQELLKANPQATPFAPAQSAGASPLDNGGIRLLYRTPLRDCHACPDVGQLQIAYDFD 212

Query: 204 TKGAFIGRKVF 214
            K  FIG++V 
Sbjct: 213 AKRNFIGQQVV 223


>gi|190575727|ref|YP_001973572.1| hypothetical protein Smlt3880 [Stenotrophomonas maltophilia K279a]
 gi|190013649|emb|CAQ47284.1| hypothetical protein Smlt3880 [Stenotrophomonas maltophilia K279a]
          Length = 227

 Score =  251 bits (641), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 7/191 (3%)

Query: 25  SSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQY 84
                +  + +SE  VW GD     Q + A   D     C+  +++  G + EA+ AA+ 
Sbjct: 39  EKAAADGKMRWSEAVVWDGDLNACRQGENAATRD-----CLRDAMRAGGASAEAITAAEQ 93

Query: 85  LEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDS 144
           L    E  YV+++ +   +GI  V+YP+RAN N GT L+   G   ID++   +     +
Sbjct: 94  LSSAGELAYVTAWHENEGLGIATVEYPFRANTNEGTRLVDASGKR-IDVDAVQLDDTLRA 152

Query: 145 SPIAKDFVLRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRSCHGCEDIGFMDIAYKFT 203
            P  ++ +  NP   P++      ++  + G I L++  PLR CH C D+G + IAY F 
Sbjct: 153 DPAVQELLKANPQATPFAPAQSAGATPLEGGGIRLLYRTPLRDCHACPDVGQLQIAYDFD 212

Query: 204 TKGAFIGRKVF 214
            K  FIG++V 
Sbjct: 213 AKRNFIGQQVV 223


>gi|254523697|ref|ZP_05135752.1| hypothetical protein SSKA14_2831 [Stenotrophomonas sp. SKA14]
 gi|219721288|gb|EED39813.1| hypothetical protein SSKA14_2831 [Stenotrophomonas sp. SKA14]
          Length = 227

 Score =  246 bits (627), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 7/183 (3%)

Query: 33  LFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPG 92
           + +SE  VW GD     Q + A   D     C+  ++   G + +A+ AA+ L    E  
Sbjct: 47  MRWSEAVVWDGDLNACRQGENAATRD-----CLRDAMHAGGASADAITAAEQLSTGGELA 101

Query: 93  YVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFV 152
           YV+++ +   +G+  V+YP+RAN N GT L+   G   ID++   +     + P  ++ +
Sbjct: 102 YVTAWHESDGLGVATVEYPFRANTNEGTRLVDASGKR-IDVDAVQLDDTLRADPTVQELL 160

Query: 153 LRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTTKGAFIGR 211
             NP   P++      ++  ++G I L++  PLR CH C D+G + +AY F  K  FIG+
Sbjct: 161 KANPQATPFAPAQSAGATPLENGGIRLLYRTPLRDCHACPDVGQLQMAYDFDAKRNFIGQ 220

Query: 212 KVF 214
           +V 
Sbjct: 221 QVV 223


>gi|303246407|ref|ZP_07332686.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
 gi|302492117|gb|EFL51992.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
          Length = 212

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 16/189 (8%)

Query: 35  FSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYV 94
              K VWK     +  C +  +   +  +C+   +++TG T EAL   + L+     GY+
Sbjct: 31  IGPKGVWKLPEAAWTDCLQKAQ---DATDCLARIMRQTGATPEALAVNKMLDGE---GYM 84

Query: 95  SSYRKEALIGIVEVQYPYRANENSGTLLI---PTVGSHIIDINDSSVHQLYDSSPIAKDF 151
            ++++   + +  + +P RAN N+ T L+   PT+ S  I+  D  +     + P     
Sbjct: 85  ETFQEMGRVDVAVMVFPLRANTNAVTYLVNGSPTLVSSEIEPADLPLA----ADPTYAAL 140

Query: 152 VLRNPGV--FPYSAGHFVKSSHKDGLIELIFSYP-LRSCHGCEDIGFMDIAYKFTTKGAF 208
              +P +  +P   G     +   G    +F+YP L  CH C  +G   ++  F   G +
Sbjct: 141 QKAHPELMFWPTGEGPSAVDTPPGGGQGFVFTYPLLNGCHACAVLGQALLSLDFGPDGTY 200

Query: 209 IGRKVFGIR 217
            G ++  + 
Sbjct: 201 HGPRLLRVE 209


>gi|298571448|gb|ADI87788.1| hypothetical protein LW5_0300 [uncultured Nitrospirae bacterium
           MY4-5C]
          Length = 188

 Score = 56.3 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 92  GYVSSYRKEALIGIVEVQYPYRANENSGT--LLIPTVGSHIIDINDSSVHQL-YDSSPIA 148
             V S+ +  ++ ++ V Y Y + E++ T   ++      II +  +++ ++     P  
Sbjct: 51  AMVMSFSELGIVDLITVSYSYTSGEDNTTVEHVLVNGAPSIIPVEKTAIAKINIKDDPKY 110

Query: 149 KDFVLRNPGV--FPYSAGHFVKSSHKDGLIELIFSYPLRS-CHGCEDIGFMDIAYKFTTK 205
             F+   P +   P  A      + + G     F + LR  C  C   G+  IA+ F   
Sbjct: 111 SKFITMTPNIIFSPVGAKFEKVQTVEAGTQRYYFLFVLRDGCDDCNAAGYARIAFDFDKD 170

Query: 206 GAFIGRKVFGIRNDNAKYPM 225
           G FI  KV  ++    + P+
Sbjct: 171 GNFI--KVVLVKLMKTRQPL 188


>gi|29655154|ref|NP_820846.1| hypothetical protein CBU_1869 [Coxiella burnetii RSA 493]
 gi|29542423|gb|AAO91360.1| hypothetical exported protein [Coxiella burnetii RSA 493]
          Length = 217

 Score = 44.8 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 90  EPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAK 149
           E G  +  R    I I+   Y Y A++ +G  L+   G  I+        +   +    +
Sbjct: 83  EGGIFNKIRSYKNIDIILADYVYIADQGTGYFLVTHSGQFIVLPLPI-TKKQLKTMSNYE 141

Query: 150 DFVLRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRS-CHGCEDIGFMDIAYKFTTKGA 207
               + P V  +    F +          L+F+  L+  C+ C   G + +AY F+  G 
Sbjct: 142 VIAKKYPHVNAWQILDFPQEIKLPRNRYRLVFTQQLKDGCNACALAGTVKVAYDFSDDGK 201

Query: 208 -FIGRKVFGIRNDN 220
            F G KV  +   N
Sbjct: 202 HFDGIKVLKLSPQN 215


>gi|212211894|ref|YP_002302830.1| hypothetical protein CbuG_0244 [Coxiella burnetii CbuG_Q212]
 gi|212010304|gb|ACJ17685.1| hypothetical exported protein [Coxiella burnetii CbuG_Q212]
          Length = 224

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 4/134 (2%)

Query: 90  EPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAK 149
           E G  +  R    I I+   Y Y A++ +G  L+   G  I         +   +    +
Sbjct: 90  EGGIFNKIRSYKNIDIILADYVYIADQGTGYFLVTHSGQFIALPLPI-TKKQLKTMSNYE 148

Query: 150 DFVLRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRS-CHGCEDIGFMDIAYKFTTKGA 207
               + P V  +    F +          L+F+  L+  C+ C   G + +AY F+  G 
Sbjct: 149 VIAKKYPHVNAWQILDFPQEIKLPRNRYRLVFTQQLKDGCNACALAGTVKVAYDFSDDGK 208

Query: 208 -FIGRKVFGIRNDN 220
            F G KV  +   N
Sbjct: 209 HFDGIKVLKLSPQN 222


>gi|161830147|ref|YP_001597687.1| hypothetical protein COXBURSA331_A2072 [Coxiella burnetii RSA 331]
 gi|161762014|gb|ABX77656.1| hypothetical protein COXBURSA331_A2072 [Coxiella burnetii RSA 331]
          Length = 217

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 4/134 (2%)

Query: 90  EPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAK 149
           E G  +  R    I I+   Y Y A++ +G  L+   G  I         +   +    +
Sbjct: 83  EGGIFNKIRSYKNIDIILADYVYIADQGTGYFLVTHSGQFIALPLPI-TKKQLKTMSNYE 141

Query: 150 DFVLRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRS-CHGCEDIGFMDIAYKFTTKGA 207
               + P V  +    F +          L+F+  L+  C+ C   G + +AY F+  G 
Sbjct: 142 VIAKKYPHVNAWQILDFPQEIKLPRNRYRLVFTQQLKDGCNACALAGTVKVAYDFSDDGK 201

Query: 208 -FIGRKVFGIRNDN 220
            F G KV  +   N
Sbjct: 202 HFDGIKVLKLSPQN 215


>gi|153206217|ref|ZP_01945480.1| hypothetical protein A35_A2019 [Coxiella burnetii 'MSU Goat Q177']
 gi|154707300|ref|YP_001423531.1| hypothetical protein CBUD_0100 [Coxiella burnetii Dugway 5J108-111]
 gi|165919288|ref|ZP_02219374.1| hypothetical protein COXBURSA334_0023 [Coxiella burnetii RSA 334]
 gi|212217843|ref|YP_002304630.1| hypothetical protein CbuK_0168 [Coxiella burnetii CbuK_Q154]
 gi|120577347|gb|EAX33971.1| hypothetical protein A35_A2019 [Coxiella burnetii 'MSU Goat Q177']
 gi|154356586|gb|ABS78048.1| hypothetical exported protein [Coxiella burnetii Dugway 5J108-111]
 gi|165917011|gb|EDR35615.1| hypothetical protein COXBURSA334_0023 [Coxiella burnetii RSA 334]
 gi|212012105|gb|ACJ19485.1| hypothetical exported protein [Coxiella burnetii CbuK_Q154]
          Length = 217

 Score = 43.2 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 4/134 (2%)

Query: 90  EPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAK 149
           E G     R    I I+   Y Y A++ +G  L+   G  I         +   +    +
Sbjct: 83  EGGIFKKIRSYKNIDIILADYVYIADQGTGYFLVTHSGQFIALPLPI-TKKQLKTMSNYE 141

Query: 150 DFVLRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRS-CHGCEDIGFMDIAYKFTTKGA 207
               + P V  +    F +          L+F+  L+  C+ C   G + +AY F+  G 
Sbjct: 142 VIAKKYPHVNAWQILDFPQEIKLPRNRYRLVFTQQLKDGCNACALAGTVKVAYDFSDDGK 201

Query: 208 -FIGRKVFGIRNDN 220
            F G KV  +   N
Sbjct: 202 HFDGIKVLKLSPQN 215


>gi|148548260|ref|YP_001268362.1| hypothetical protein Pput_3050 [Pseudomonas putida F1]
 gi|148512318|gb|ABQ79178.1| hypothetical protein Pput_3050 [Pseudomonas putida F1]
          Length = 376

 Score = 38.2 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 3/117 (2%)

Query: 67  TSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENS--GTLLIP 124
            +++ T  T   LR A    +    G +  + K   +       P+ A   S    L +P
Sbjct: 109 EALEGTWDTVGTLRLATVALRSRTLGKLE-FGKTYGMATPTYADPFLATYGSPYTYLALP 167

Query: 125 TVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFS 181
             G     ++    H L  +SP    F L     F +        + + G   L + 
Sbjct: 168 AAGKGAYYLDLRPKHTLAYTSPTFSGFSLGTALSFGFDDAASAGRTVRGGGARLQYR 224


>gi|17549457|ref|NP_522797.1| hypothetical protein RS03180 [Ralstonia solanacearum GMI1000]
          Length = 540

 Score = 37.8 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 13/160 (8%)

Query: 29  QNHLLF-FSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKK---TGGTQEALRAAQY 84
           Q HLL   S    W+   E     + A      +++ +   + K    G   +A RAA  
Sbjct: 361 QEHLLRNLSRSPAWRQFLEQQRPVEFAAN-TLLWESALQDVMAKPAGDGAVADAPRAAST 419

Query: 85  LEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHII-----DINDSSVH 139
                    ++       IG  +  + +R  EN+  +L  T+   ++       +++  H
Sbjct: 420 TAPGSRTEALAQAHAMPGIGTGQA-FQHR-QENATAMLAETMTRKLVMESAPPPDETGAH 477

Query: 140 QLYDSSPIAKD-FVLRNPGVFPYSAGHFVKSSHKDGLIEL 178
               + P         +P    +S      +   D L+ L
Sbjct: 478 AALLTDPDWLAYLQKEHPEDRAFSPADMHAAERHDLLMRL 517


>gi|313499217|gb|ADR60583.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 376

 Score = 37.1 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 3/117 (2%)

Query: 67  TSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENS--GTLLIP 124
            +++ T  T   LR A    +    G +  + K   +       P+ A   S    L +P
Sbjct: 109 EALEGTWDTVGTLRLATVALRSRTLGKLE-FGKTYGMATPTYADPFLATYGSPYTYLALP 167

Query: 125 TVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFS 181
             G     ++    H L  +SP    F L     F +        + + G   L + 
Sbjct: 168 AAGKGAFYLDLRPKHTLAYTSPTFSGFSLGTALSFGFDDAASAGRTVRGGGARLQYR 224


>gi|26989421|ref|NP_744846.1| hypothetical protein PP_2702 [Pseudomonas putida KT2440]
 gi|24984286|gb|AAN68310.1|AE016465_3 porin, putative [Pseudomonas putida KT2440]
          Length = 376

 Score = 37.1 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 3/117 (2%)

Query: 67  TSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENS--GTLLIP 124
            +++ T  T   LR A    +    G +  + K   +       P+ A   S    L +P
Sbjct: 109 EALEGTWDTVGTLRLATVALRSRTLGKLE-FGKTYGMATPTYADPFLATYGSPYTYLALP 167

Query: 125 TVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFS 181
             G     ++    H L  +SP    F L     F +        + + G   L + 
Sbjct: 168 AAGKGAFYLDLRPKHTLAYTSPTFSGFSLGTALSFGFDDAASAGRTVRGGGARLQYR 224


>gi|95108220|emb|CAD18387.2| putative type III effector protein [Ralstonia solanacearum GMI1000]
          Length = 605

 Score = 37.1 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 13/160 (8%)

Query: 29  QNHLLF-FSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKK---TGGTQEALRAAQY 84
           Q HLL   S    W+   E     + A      +++ +   + K    G   +A RAA  
Sbjct: 426 QEHLLRNLSRSPAWRQFLEQQRPVEFAAN-TLLWESALQDVMAKPAGDGAVADAPRAAST 484

Query: 85  LEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHII-----DINDSSVH 139
                    ++       IG  +  + +R  EN+  +L  T+   ++       +++  H
Sbjct: 485 TAPGSRTEALAQAHAMPGIGTGQA-FQHR-QENATAMLAETMTRKLVMESAPPPDETGAH 542

Query: 140 QLYDSSPIAKD-FVLRNPGVFPYSAGHFVKSSHKDGLIEL 178
               + P         +P    +S      +   D L+ L
Sbjct: 543 AALLTDPDWLAYLQKEHPEDRAFSPADMHAAERHDLLMRL 582


>gi|317025619|ref|XP_001389453.2| beta-galactosidase B [Aspergillus niger CBS 513.88]
          Length = 1016

 Score = 36.3 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 55  HEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRA 114
              D    + I    + T  T  A++A +        G+  +  +++ +G  E  +  R 
Sbjct: 399 SARDLTMTDLIGNGTQYTNNT--AVKAYELRNPTTNAGFYVTLHEDSTVGTNEA-FSLRV 455

Query: 115 NENSGTLLIPTVGSHI 130
           N ++G L++P +G  I
Sbjct: 456 NTSAGNLIVPRLGGSI 471


>gi|300681011|sp|A2QA64|BGALB_ASPNC RecName: Full=Probable beta-galactosidase B; AltName: Full=Lactase
           B; Flags: Precursor
          Length = 1017

 Score = 36.3 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 55  HEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRA 114
              D    + I    + T  T  A++A +        G+  +  +++ +G  E  +  R 
Sbjct: 399 SARDLTMTDLIGNGTQYTNNT--AVKAYELRNPTTNAGFYVTLHEDSTVGTNEA-FSLRV 455

Query: 115 NENSGTLLIPTVGSHI 130
           N ++G L++P +G  I
Sbjct: 456 NTSAGNLIVPRLGGSI 471


>gi|134055570|emb|CAK37216.1| unnamed protein product [Aspergillus niger]
          Length = 1014

 Score = 36.3 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 55  HEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRA 114
              D    + I    + T  T  A++A +        G+  +  +++ +G  E  +  R 
Sbjct: 396 SARDLTMTDLIGNGTQYTNNT--AVKAYELRNPTTNAGFYVTLHEDSTVGTNEA-FSLRV 452

Query: 115 NENSGTLLIPTVGSHI 130
           N ++G L++P +G  I
Sbjct: 453 NTSAGNLIVPRLGGSI 468


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.125    0.328 

Lambda     K      H
   0.267   0.0382    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,754,693,349
Number of Sequences: 14124377
Number of extensions: 133285661
Number of successful extensions: 332367
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 332330
Number of HSP's gapped (non-prelim): 40
length of query: 229
length of database: 4,842,793,630
effective HSP length: 134
effective length of query: 95
effective length of database: 2,950,127,112
effective search space: 280262075640
effective search space used: 280262075640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 78 (34.8 bits)