BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780965|ref|YP_003065378.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62] (229 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780965|ref|YP_003065378.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62] gi|254040642|gb|ACT57438.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62] Length = 229 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 229/229 (100%), Positives = 229/229 (100%) Query: 1 MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN 60 MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN Sbjct: 1 MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN 60 Query: 61 FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT 120 FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT Sbjct: 61 FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT 120 Query: 121 LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF 180 LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF Sbjct: 121 LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF 180 Query: 181 SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI 229 SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI Sbjct: 181 SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI 229 >gi|315122772|ref|YP_004063261.1| hypothetical protein CKC_05135 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496174|gb|ADR52773.1| hypothetical protein CKC_05135 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 213 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/215 (35%), Positives = 113/215 (52%), Gaps = 17/215 (7%) Query: 7 IIILLVLVGVILAFYFQQSSTPQNHLL-FFSEKAVWKGDSETYFQCKRAHEFDENFDNCI 65 + I LVL+ ++ + P H +EK+VW D +C E D C+ Sbjct: 9 LFITLVLISCDKKNVQKKENAPPPHSASVINEKSVWHDDLAN--KCASY----ETRDICL 62 Query: 66 ITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPT 125 I I+K+G EAL+A QYL K E GYV S+RKE IGI E++YP+RAN N+ TLLIP Sbjct: 63 IKEIEKSGSI-EALKAVQYLNKTREMGYVYSFRKEGPIGIAEIEYPFRANTNTTTLLIPP 121 Query: 126 VGSHIIDINDSSVHQLYD---SSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSY 182 G I +YD +S + DF ++P + +K+ + IE IFS+ Sbjct: 122 AGKPIY------TEDIYDDLLTSKVWLDFKKQHPYSNIQDSAVLMKTEKNNDDIEFIFSF 175 Query: 183 PLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIR 217 + +CHGCE+ + I+YKFT +G FI + ++ Sbjct: 176 RVGTCHGCEETARVYISYKFTHEGVFIKNNILYVK 210 >gi|194367068|ref|YP_002029678.1| hypothetical protein Smal_3296 [Stenotrophomonas maltophilia R551-3] gi|194349872|gb|ACF52995.1| hypothetical protein Smal_3296 [Stenotrophomonas maltophilia R551-3] Length = 227 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 94/183 (51%), Gaps = 7/183 (3%) Query: 33 LFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPG 92 + +SE VW GD Q + A D C+ +++ G + +A+ AA+ L E Sbjct: 47 MRWSEAVVWDGDLNACRQGENAATRD-----CLRDAMRAGGASADAITAAEQLSSGGELA 101 Query: 93 YVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFV 152 YV+++ + +GI V+YP+RAN N GT L+ G ID++ + + P ++ + Sbjct: 102 YVTAWHENEGLGIATVEYPFRANTNEGTRLV-DAGGKRIDVDAVQLDDTLRADPTVQELL 160 Query: 153 LRNPGVFPYSAGHFVKSSHKD-GLIELIFSYPLRSCHGCEDIGFMDIAYKFTTKGAFIGR 211 NP P++ +S D G I L++ PLR CH C D+G + IAY F K FIG+ Sbjct: 161 KANPQATPFAPAQSAGASPLDNGGIRLLYRTPLRDCHACPDVGQLQIAYDFDAKRNFIGQ 220 Query: 212 KVF 214 +V Sbjct: 221 QVV 223 >gi|190575727|ref|YP_001973572.1| hypothetical protein Smlt3880 [Stenotrophomonas maltophilia K279a] gi|190013649|emb|CAQ47284.1| hypothetical protein Smlt3880 [Stenotrophomonas maltophilia K279a] Length = 227 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 7/183 (3%) Query: 33 LFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPG 92 + +SE VW GD Q + A D C+ +++ G + EA+ AA+ L E Sbjct: 47 MRWSEAVVWDGDLNACRQGENAATRD-----CLRDAMRAGGASAEAITAAEQLSSAGELA 101 Query: 93 YVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFV 152 YV+++ + +GI V+YP+RAN N GT L+ G ID++ + + P ++ + Sbjct: 102 YVTAWHENEGLGIATVEYPFRANTNEGTRLVDASGKR-IDVDAVQLDDTLRADPAVQELL 160 Query: 153 LRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTTKGAFIGR 211 NP P++ ++ + G I L++ PLR CH C D+G + IAY F K FIG+ Sbjct: 161 KANPQATPFAPAQSAGATPLEGGGIRLLYRTPLRDCHACPDVGQLQIAYDFDAKRNFIGQ 220 Query: 212 KVF 214 +V Sbjct: 221 QVV 223 >gi|254523697|ref|ZP_05135752.1| hypothetical protein SSKA14_2831 [Stenotrophomonas sp. SKA14] gi|219721288|gb|EED39813.1| hypothetical protein SSKA14_2831 [Stenotrophomonas sp. SKA14] Length = 227 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 7/183 (3%) Query: 33 LFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPG 92 + +SE VW GD Q + A D C+ ++ G + +A+ AA+ L E Sbjct: 47 MRWSEAVVWDGDLNACRQGENAATRD-----CLRDAMHAGGASADAITAAEQLSTGGELA 101 Query: 93 YVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFV 152 YV+++ + +G+ V+YP+RAN N GT L+ G ID++ + + P ++ + Sbjct: 102 YVTAWHESDGLGVATVEYPFRANTNEGTRLVDASGKR-IDVDAVQLDDTLRADPTVQELL 160 Query: 153 LRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTTKGAFIGR 211 NP P++ ++ ++G I L++ PLR CH C D+G + +AY F K FIG+ Sbjct: 161 KANPQATPFAPAQSAGATPLENGGIRLLYRTPLRDCHACPDVGQLQMAYDFDAKRNFIGQ 220 Query: 212 KVF 214 +V Sbjct: 221 QVV 223 >gi|303246407|ref|ZP_07332686.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] gi|302492117|gb|EFL51992.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] Length = 212 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 16/186 (8%) Query: 35 FSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYV 94 K VWK + C + + + +C+ +++TG T EAL + L+ GY+ Sbjct: 31 IGPKGVWKLPEAAWTDCLQKAQ---DATDCLARIMRQTGATPEALAVNKMLDGE---GYM 84 Query: 95 SSYRKEALIGIVEVQYPYRANENSGTLLI---PTVGSHIIDINDSSVHQLYDSSPIAKDF 151 ++++ + + + +P RAN N+ T L+ PT+ S I+ D + + P Sbjct: 85 ETFQEMGRVDVAVMVFPLRANTNAVTYLVNGSPTLVSSEIEPADLPLA----ADPTYAAL 140 Query: 152 VLRNPGV--FPYSAGHFVKSSHKDGLIELIFSYP-LRSCHGCEDIGFMDIAYKFTTKGAF 208 +P + +P G + G +F+YP L CH C +G ++ F G + Sbjct: 141 QKAHPELMFWPTGEGPSAVDTPPGGGQGFVFTYPLLNGCHACAVLGQALLSLDFGPDGTY 200 Query: 209 IGRKVF 214 G ++ Sbjct: 201 HGPRLL 206 >gi|300789946|ref|YP_003770237.1| thioesterase [Amycolatopsis mediterranei U32] gi|299799460|gb|ADJ49835.1| thioesterase [Amycolatopsis mediterranei U32] Length = 248 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 17/128 (13%) Query: 52 KRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYP 111 +R HE D D ++ +K+ GGT A+ + + + P S Y+ L Y Sbjct: 132 ERIHEKD---DEALLAEVKRLGGTDTAVLDDEDIRSLVLPALRSDYKAAEL-------YH 181 Query: 112 YRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSH 171 YR + G ++ VG + ++ Q + + + +F L+ Y GHF + H Sbjct: 182 YRPGPDVGCPIVALVGDQDPKVTEAEARQWAERT--SGEFELKT-----YPGGHFYLNDH 234 Query: 172 KDGLIELI 179 +I LI Sbjct: 235 AAAIIRLI 242 >gi|269123914|ref|YP_003306491.1| hypothetical protein Smon_1159 [Streptobacillus moniliformis DSM 12112] gi|268315240|gb|ACZ01614.1| domain of unknown function DUF1738 [Streptobacillus moniliformis DSM 12112] Length = 389 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 20 FYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEAL 79 + F + + L SEK + + +++ + K+ EF++ F N I T I + ++ Sbjct: 100 WSFPKEKLTDDKLKELSEKEIKRIENKIALRVKKGWEFEDGFGNKIATPIDRN--HKDFN 157 Query: 80 RAAQYLEKYLEPGYVSSYRKEALIGIVEVQYP 111 A+Y+E PGY + + + + G+ E +YP Sbjct: 158 LVAKYVENTPLPGYFNVFNAKDIEGLEEFKYP 189 >gi|147778603|emb|CAN67042.1| hypothetical protein VITISV_037621 [Vitis vinifera] Length = 492 Score = 35.4 bits (80), Expect = 5.6, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 9/78 (11%) Query: 70 KKTGGTQEALRAAQYL-EKYLEPGYVSSY-RKEALIGIVEVQYPYRANENSGTLLIPTVG 127 K+ G T EA R+ YL EK ++ G++ Y R +A I N NSGTL IP Sbjct: 413 KEHGQTTEACRSLHYLVEKLIKVGHLKQYVRSDATIRDTS------RNHNSGTLRIPAAP 466 Query: 128 SHIID-INDSSVHQLYDS 144 II+ I+ + + YDS Sbjct: 467 KAIINYIHRGPLDEEYDS 484 Searching..................................................done Results from round 2 >gi|254780965|ref|YP_003065378.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62] gi|254040642|gb|ACT57438.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62] Length = 229 Score = 357 bits (915), Expect = 1e-96, Method: Composition-based stats. Identities = 229/229 (100%), Positives = 229/229 (100%) Query: 1 MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN 60 MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN Sbjct: 1 MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN 60 Query: 61 FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT 120 FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT Sbjct: 61 FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT 120 Query: 121 LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF 180 LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF Sbjct: 121 LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF 180 Query: 181 SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI 229 SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI Sbjct: 181 SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI 229 >gi|315122772|ref|YP_004063261.1| hypothetical protein CKC_05135 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496174|gb|ADR52773.1| hypothetical protein CKC_05135 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 213 Score = 265 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 75/212 (35%), Positives = 113/212 (53%), Gaps = 11/212 (5%) Query: 7 IIILLVLVGVILAFYFQQSSTPQNHLL-FFSEKAVWKGDSETYFQCKRAHEFDENFDNCI 65 + I LVL+ ++ + P H +EK+VW D +C E D C+ Sbjct: 9 LFITLVLISCDKKNVQKKENAPPPHSASVINEKSVWHDDLAN--KCASY----ETRDICL 62 Query: 66 ITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPT 125 I I+K+G EAL+A QYL K E GYV S+RKE IGI E++YP+RAN N+ TLLIP Sbjct: 63 IKEIEKSGSI-EALKAVQYLNKTREMGYVYSFRKEGPIGIAEIEYPFRANTNTTTLLIPP 121 Query: 126 VGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPLR 185 G I + ++ +S + DF ++P + +K+ + IE IFS+ + Sbjct: 122 AGKPIYTED---IYDDLLTSKVWLDFKKQHPYSNIQDSAVLMKTEKNNDDIEFIFSFRVG 178 Query: 186 SCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIR 217 +CHGCE+ + I+YKFT +G FI + ++ Sbjct: 179 TCHGCEETARVYISYKFTHEGVFIKNNILYVK 210 >gi|194367068|ref|YP_002029678.1| hypothetical protein Smal_3296 [Stenotrophomonas maltophilia R551-3] gi|194349872|gb|ACF52995.1| hypothetical protein Smal_3296 [Stenotrophomonas maltophilia R551-3] Length = 227 Score = 252 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 7/191 (3%) Query: 25 SSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQY 84 + + +SE VW GD Q + A D C+ +++ G + +A+ AA+ Sbjct: 39 EKAAADGKMRWSEAVVWDGDLNACRQGENAATRD-----CLRDAMRAGGASADAITAAEQ 93 Query: 85 LEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDS 144 L E YV+++ + +GI V+YP+RAN N GT L+ G ID++ + + Sbjct: 94 LSSGGELAYVTAWHENEGLGIATVEYPFRANTNEGTRLVD-AGGKRIDVDAVQLDDTLRA 152 Query: 145 SPIAKDFVLRNPGVFPYSAGHFVKSSHKD-GLIELIFSYPLRSCHGCEDIGFMDIAYKFT 203 P ++ + NP P++ +S D G I L++ PLR CH C D+G + IAY F Sbjct: 153 DPTVQELLKANPQATPFAPAQSAGASPLDNGGIRLLYRTPLRDCHACPDVGQLQIAYDFD 212 Query: 204 TKGAFIGRKVF 214 K FIG++V Sbjct: 213 AKRNFIGQQVV 223 >gi|190575727|ref|YP_001973572.1| hypothetical protein Smlt3880 [Stenotrophomonas maltophilia K279a] gi|190013649|emb|CAQ47284.1| hypothetical protein Smlt3880 [Stenotrophomonas maltophilia K279a] Length = 227 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 7/191 (3%) Query: 25 SSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQY 84 + + +SE VW GD Q + A D C+ +++ G + EA+ AA+ Sbjct: 39 EKAAADGKMRWSEAVVWDGDLNACRQGENAATRD-----CLRDAMRAGGASAEAITAAEQ 93 Query: 85 LEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDS 144 L E YV+++ + +GI V+YP+RAN N GT L+ G ID++ + + Sbjct: 94 LSSAGELAYVTAWHENEGLGIATVEYPFRANTNEGTRLVDASGKR-IDVDAVQLDDTLRA 152 Query: 145 SPIAKDFVLRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRSCHGCEDIGFMDIAYKFT 203 P ++ + NP P++ ++ + G I L++ PLR CH C D+G + IAY F Sbjct: 153 DPAVQELLKANPQATPFAPAQSAGATPLEGGGIRLLYRTPLRDCHACPDVGQLQIAYDFD 212 Query: 204 TKGAFIGRKVF 214 K FIG++V Sbjct: 213 AKRNFIGQQVV 223 >gi|254523697|ref|ZP_05135752.1| hypothetical protein SSKA14_2831 [Stenotrophomonas sp. SKA14] gi|219721288|gb|EED39813.1| hypothetical protein SSKA14_2831 [Stenotrophomonas sp. SKA14] Length = 227 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 7/183 (3%) Query: 33 LFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPG 92 + +SE VW GD Q + A D C+ ++ G + +A+ AA+ L E Sbjct: 47 MRWSEAVVWDGDLNACRQGENAATRD-----CLRDAMHAGGASADAITAAEQLSTGGELA 101 Query: 93 YVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFV 152 YV+++ + +G+ V+YP+RAN N GT L+ G ID++ + + P ++ + Sbjct: 102 YVTAWHESDGLGVATVEYPFRANTNEGTRLVDASGKR-IDVDAVQLDDTLRADPTVQELL 160 Query: 153 LRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTTKGAFIGR 211 NP P++ ++ ++G I L++ PLR CH C D+G + +AY F K FIG+ Sbjct: 161 KANPQATPFAPAQSAGATPLENGGIRLLYRTPLRDCHACPDVGQLQMAYDFDAKRNFIGQ 220 Query: 212 KVF 214 +V Sbjct: 221 QVV 223 >gi|303246407|ref|ZP_07332686.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] gi|302492117|gb|EFL51992.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] Length = 212 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 16/189 (8%) Query: 35 FSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYV 94 K VWK + C + + + +C+ +++TG T EAL + L+ GY+ Sbjct: 31 IGPKGVWKLPEAAWTDCLQKAQ---DATDCLARIMRQTGATPEALAVNKMLDGE---GYM 84 Query: 95 SSYRKEALIGIVEVQYPYRANENSGTLLI---PTVGSHIIDINDSSVHQLYDSSPIAKDF 151 ++++ + + + +P RAN N+ T L+ PT+ S I+ D + + P Sbjct: 85 ETFQEMGRVDVAVMVFPLRANTNAVTYLVNGSPTLVSSEIEPADLPLA----ADPTYAAL 140 Query: 152 VLRNPGV--FPYSAGHFVKSSHKDGLIELIFSYP-LRSCHGCEDIGFMDIAYKFTTKGAF 208 +P + +P G + G +F+YP L CH C +G ++ F G + Sbjct: 141 QKAHPELMFWPTGEGPSAVDTPPGGGQGFVFTYPLLNGCHACAVLGQALLSLDFGPDGTY 200 Query: 209 IGRKVFGIR 217 G ++ + Sbjct: 201 HGPRLLRVE 209 >gi|298571448|gb|ADI87788.1| hypothetical protein LW5_0300 [uncultured Nitrospirae bacterium MY4-5C] Length = 188 Score = 56.3 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 8/140 (5%) Query: 92 GYVSSYRKEALIGIVEVQYPYRANENSGT--LLIPTVGSHIIDINDSSVHQL-YDSSPIA 148 V S+ + ++ ++ V Y Y + E++ T ++ II + +++ ++ P Sbjct: 51 AMVMSFSELGIVDLITVSYSYTSGEDNTTVEHVLVNGAPSIIPVEKTAIAKINIKDDPKY 110 Query: 149 KDFVLRNPGV--FPYSAGHFVKSSHKDGLIELIFSYPLRS-CHGCEDIGFMDIAYKFTTK 205 F+ P + P A + + G F + LR C C G+ IA+ F Sbjct: 111 SKFITMTPNIIFSPVGAKFEKVQTVEAGTQRYYFLFVLRDGCDDCNAAGYARIAFDFDKD 170 Query: 206 GAFIGRKVFGIRNDNAKYPM 225 G FI KV ++ + P+ Sbjct: 171 GNFI--KVVLVKLMKTRQPL 188 >gi|29655154|ref|NP_820846.1| hypothetical protein CBU_1869 [Coxiella burnetii RSA 493] gi|29542423|gb|AAO91360.1| hypothetical exported protein [Coxiella burnetii RSA 493] Length = 217 Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 4/134 (2%) Query: 90 EPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAK 149 E G + R I I+ Y Y A++ +G L+ G I+ + + + Sbjct: 83 EGGIFNKIRSYKNIDIILADYVYIADQGTGYFLVTHSGQFIVLPLPI-TKKQLKTMSNYE 141 Query: 150 DFVLRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRS-CHGCEDIGFMDIAYKFTTKGA 207 + P V + F + L+F+ L+ C+ C G + +AY F+ G Sbjct: 142 VIAKKYPHVNAWQILDFPQEIKLPRNRYRLVFTQQLKDGCNACALAGTVKVAYDFSDDGK 201 Query: 208 -FIGRKVFGIRNDN 220 F G KV + N Sbjct: 202 HFDGIKVLKLSPQN 215 >gi|212211894|ref|YP_002302830.1| hypothetical protein CbuG_0244 [Coxiella burnetii CbuG_Q212] gi|212010304|gb|ACJ17685.1| hypothetical exported protein [Coxiella burnetii CbuG_Q212] Length = 224 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 4/134 (2%) Query: 90 EPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAK 149 E G + R I I+ Y Y A++ +G L+ G I + + + Sbjct: 90 EGGIFNKIRSYKNIDIILADYVYIADQGTGYFLVTHSGQFIALPLPI-TKKQLKTMSNYE 148 Query: 150 DFVLRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRS-CHGCEDIGFMDIAYKFTTKGA 207 + P V + F + L+F+ L+ C+ C G + +AY F+ G Sbjct: 149 VIAKKYPHVNAWQILDFPQEIKLPRNRYRLVFTQQLKDGCNACALAGTVKVAYDFSDDGK 208 Query: 208 -FIGRKVFGIRNDN 220 F G KV + N Sbjct: 209 HFDGIKVLKLSPQN 222 >gi|161830147|ref|YP_001597687.1| hypothetical protein COXBURSA331_A2072 [Coxiella burnetii RSA 331] gi|161762014|gb|ABX77656.1| hypothetical protein COXBURSA331_A2072 [Coxiella burnetii RSA 331] Length = 217 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 4/134 (2%) Query: 90 EPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAK 149 E G + R I I+ Y Y A++ +G L+ G I + + + Sbjct: 83 EGGIFNKIRSYKNIDIILADYVYIADQGTGYFLVTHSGQFIALPLPI-TKKQLKTMSNYE 141 Query: 150 DFVLRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRS-CHGCEDIGFMDIAYKFTTKGA 207 + P V + F + L+F+ L+ C+ C G + +AY F+ G Sbjct: 142 VIAKKYPHVNAWQILDFPQEIKLPRNRYRLVFTQQLKDGCNACALAGTVKVAYDFSDDGK 201 Query: 208 -FIGRKVFGIRNDN 220 F G KV + N Sbjct: 202 HFDGIKVLKLSPQN 215 >gi|153206217|ref|ZP_01945480.1| hypothetical protein A35_A2019 [Coxiella burnetii 'MSU Goat Q177'] gi|154707300|ref|YP_001423531.1| hypothetical protein CBUD_0100 [Coxiella burnetii Dugway 5J108-111] gi|165919288|ref|ZP_02219374.1| hypothetical protein COXBURSA334_0023 [Coxiella burnetii RSA 334] gi|212217843|ref|YP_002304630.1| hypothetical protein CbuK_0168 [Coxiella burnetii CbuK_Q154] gi|120577347|gb|EAX33971.1| hypothetical protein A35_A2019 [Coxiella burnetii 'MSU Goat Q177'] gi|154356586|gb|ABS78048.1| hypothetical exported protein [Coxiella burnetii Dugway 5J108-111] gi|165917011|gb|EDR35615.1| hypothetical protein COXBURSA334_0023 [Coxiella burnetii RSA 334] gi|212012105|gb|ACJ19485.1| hypothetical exported protein [Coxiella burnetii CbuK_Q154] Length = 217 Score = 43.2 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 4/134 (2%) Query: 90 EPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAK 149 E G R I I+ Y Y A++ +G L+ G I + + + Sbjct: 83 EGGIFKKIRSYKNIDIILADYVYIADQGTGYFLVTHSGQFIALPLPI-TKKQLKTMSNYE 141 Query: 150 DFVLRNPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRS-CHGCEDIGFMDIAYKFTTKGA 207 + P V + F + L+F+ L+ C+ C G + +AY F+ G Sbjct: 142 VIAKKYPHVNAWQILDFPQEIKLPRNRYRLVFTQQLKDGCNACALAGTVKVAYDFSDDGK 201 Query: 208 -FIGRKVFGIRNDN 220 F G KV + N Sbjct: 202 HFDGIKVLKLSPQN 215 >gi|148548260|ref|YP_001268362.1| hypothetical protein Pput_3050 [Pseudomonas putida F1] gi|148512318|gb|ABQ79178.1| hypothetical protein Pput_3050 [Pseudomonas putida F1] Length = 376 Score = 38.2 bits (87), Expect = 0.88, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 3/117 (2%) Query: 67 TSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENS--GTLLIP 124 +++ T T LR A + G + + K + P+ A S L +P Sbjct: 109 EALEGTWDTVGTLRLATVALRSRTLGKLE-FGKTYGMATPTYADPFLATYGSPYTYLALP 167 Query: 125 TVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFS 181 G ++ H L +SP F L F + + + G L + Sbjct: 168 AAGKGAYYLDLRPKHTLAYTSPTFSGFSLGTALSFGFDDAASAGRTVRGGGARLQYR 224 >gi|17549457|ref|NP_522797.1| hypothetical protein RS03180 [Ralstonia solanacearum GMI1000] Length = 540 Score = 37.8 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 13/160 (8%) Query: 29 QNHLLF-FSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKK---TGGTQEALRAAQY 84 Q HLL S W+ E + A +++ + + K G +A RAA Sbjct: 361 QEHLLRNLSRSPAWRQFLEQQRPVEFAAN-TLLWESALQDVMAKPAGDGAVADAPRAAST 419 Query: 85 LEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHII-----DINDSSVH 139 ++ IG + + +R EN+ +L T+ ++ +++ H Sbjct: 420 TAPGSRTEALAQAHAMPGIGTGQA-FQHR-QENATAMLAETMTRKLVMESAPPPDETGAH 477 Query: 140 QLYDSSPIAKD-FVLRNPGVFPYSAGHFVKSSHKDGLIEL 178 + P +P +S + D L+ L Sbjct: 478 AALLTDPDWLAYLQKEHPEDRAFSPADMHAAERHDLLMRL 517 >gi|313499217|gb|ADR60583.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1] Length = 376 Score = 37.1 bits (84), Expect = 1.7, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 3/117 (2%) Query: 67 TSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENS--GTLLIP 124 +++ T T LR A + G + + K + P+ A S L +P Sbjct: 109 EALEGTWDTVGTLRLATVALRSRTLGKLE-FGKTYGMATPTYADPFLATYGSPYTYLALP 167 Query: 125 TVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFS 181 G ++ H L +SP F L F + + + G L + Sbjct: 168 AAGKGAFYLDLRPKHTLAYTSPTFSGFSLGTALSFGFDDAASAGRTVRGGGARLQYR 224 >gi|26989421|ref|NP_744846.1| hypothetical protein PP_2702 [Pseudomonas putida KT2440] gi|24984286|gb|AAN68310.1|AE016465_3 porin, putative [Pseudomonas putida KT2440] Length = 376 Score = 37.1 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 3/117 (2%) Query: 67 TSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENS--GTLLIP 124 +++ T T LR A + G + + K + P+ A S L +P Sbjct: 109 EALEGTWDTVGTLRLATVALRSRTLGKLE-FGKTYGMATPTYADPFLATYGSPYTYLALP 167 Query: 125 TVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFS 181 G ++ H L +SP F L F + + + G L + Sbjct: 168 AAGKGAFYLDLRPKHTLAYTSPTFSGFSLGTALSFGFDDAASAGRTVRGGGARLQYR 224 >gi|95108220|emb|CAD18387.2| putative type III effector protein [Ralstonia solanacearum GMI1000] Length = 605 Score = 37.1 bits (84), Expect = 1.8, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 13/160 (8%) Query: 29 QNHLLF-FSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKK---TGGTQEALRAAQY 84 Q HLL S W+ E + A +++ + + K G +A RAA Sbjct: 426 QEHLLRNLSRSPAWRQFLEQQRPVEFAAN-TLLWESALQDVMAKPAGDGAVADAPRAAST 484 Query: 85 LEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHII-----DINDSSVH 139 ++ IG + + +R EN+ +L T+ ++ +++ H Sbjct: 485 TAPGSRTEALAQAHAMPGIGTGQA-FQHR-QENATAMLAETMTRKLVMESAPPPDETGAH 542 Query: 140 QLYDSSPIAKD-FVLRNPGVFPYSAGHFVKSSHKDGLIEL 178 + P +P +S + D L+ L Sbjct: 543 AALLTDPDWLAYLQKEHPEDRAFSPADMHAAERHDLLMRL 582 >gi|317025619|ref|XP_001389453.2| beta-galactosidase B [Aspergillus niger CBS 513.88] Length = 1016 Score = 36.3 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Query: 55 HEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRA 114 D + I + T T A++A + G+ + +++ +G E + R Sbjct: 399 SARDLTMTDLIGNGTQYTNNT--AVKAYELRNPTTNAGFYVTLHEDSTVGTNEA-FSLRV 455 Query: 115 NENSGTLLIPTVGSHI 130 N ++G L++P +G I Sbjct: 456 NTSAGNLIVPRLGGSI 471 >gi|300681011|sp|A2QA64|BGALB_ASPNC RecName: Full=Probable beta-galactosidase B; AltName: Full=Lactase B; Flags: Precursor Length = 1017 Score = 36.3 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Query: 55 HEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRA 114 D + I + T T A++A + G+ + +++ +G E + R Sbjct: 399 SARDLTMTDLIGNGTQYTNNT--AVKAYELRNPTTNAGFYVTLHEDSTVGTNEA-FSLRV 455 Query: 115 NENSGTLLIPTVGSHI 130 N ++G L++P +G I Sbjct: 456 NTSAGNLIVPRLGGSI 471 >gi|134055570|emb|CAK37216.1| unnamed protein product [Aspergillus niger] Length = 1014 Score = 36.3 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%) Query: 55 HEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRA 114 D + I + T T A++A + G+ + +++ +G E + R Sbjct: 396 SARDLTMTDLIGNGTQYTNNT--AVKAYELRNPTTNAGFYVTLHEDSTVGTNEA-FSLRV 452 Query: 115 NENSGTLLIPTVGSHI 130 N ++G L++P +G I Sbjct: 453 NTSAGNLIVPRLGGSI 468 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.312 0.125 0.328 Lambda K H 0.267 0.0382 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,754,693,349 Number of Sequences: 14124377 Number of extensions: 133285661 Number of successful extensions: 332367 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 29 Number of HSP's that attempted gapping in prelim test: 332330 Number of HSP's gapped (non-prelim): 40 length of query: 229 length of database: 4,842,793,630 effective HSP length: 134 effective length of query: 95 effective length of database: 2,950,127,112 effective search space: 280262075640 effective search space used: 280262075640 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 78 (34.8 bits)