BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780965|ref|YP_003065378.1| hypothetical protein
CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62]
(229 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780965|ref|YP_003065378.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040642|gb|ACT57438.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 229
Score = 374 bits (961), Expect = e-102, Method: Composition-based stats.
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN 60
MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN
Sbjct: 1 MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDEN 60
Query: 61 FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT 120
FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT
Sbjct: 61 FDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGT 120
Query: 121 LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF 180
LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF
Sbjct: 121 LLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIF 180
Query: 181 SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI 229
SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI
Sbjct: 181 SYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIRNDNAKYPMHFFI 229
>gi|254523697|ref|ZP_05135752.1| hypothetical protein SSKA14_2831 [Stenotrophomonas sp. SKA14]
gi|219721288|gb|EED39813.1| hypothetical protein SSKA14_2831 [Stenotrophomonas sp. SKA14]
Length = 227
Score = 250 bits (637), Expect = 1e-64, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 7/181 (3%)
Query: 35 FSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYV 94
+SE VW GD Q + A D C+ ++ G + +A+ AA+ L E YV
Sbjct: 49 WSEAVVWDGDLNACRQGENAATRD-----CLRDAMHAGGASADAITAAEQLSTGGELAYV 103
Query: 95 SSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLR 154
+++ + +G+ V+YP+RAN N GT L+ G ID++ + + P ++ +
Sbjct: 104 TAWHESDGLGVATVEYPFRANTNEGTRLVDASGKR-IDVDAVQLDDTLRADPTVQELLKA 162
Query: 155 NPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKV 213
NP P++ ++ ++G I L++ PLR CH C D+G + +AY F K FIG++V
Sbjct: 163 NPQATPFAPAQSAGATPLENGGIRLLYRTPLRDCHACPDVGQLQMAYDFDAKRNFIGQQV 222
Query: 214 F 214
Sbjct: 223 V 223
>gi|194367068|ref|YP_002029678.1| hypothetical protein Smal_3296 [Stenotrophomonas maltophilia
R551-3]
gi|194349872|gb|ACF52995.1| hypothetical protein Smal_3296 [Stenotrophomonas maltophilia
R551-3]
Length = 227
Score = 245 bits (624), Expect = 5e-63, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 7/181 (3%)
Query: 35 FSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYV 94
+SE VW GD Q + A D C+ +++ G + +A+ AA+ L E YV
Sbjct: 49 WSEAVVWDGDLNACRQGENAATRD-----CLRDAMRAGGASADAITAAEQLSSGGELAYV 103
Query: 95 SSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLR 154
+++ + +GI V+YP+RAN N GT L+ G ID++ + + P ++ +
Sbjct: 104 TAWHENEGLGIATVEYPFRANTNEGTRLVDAGGKR-IDVDAVQLDDTLRADPTVQELLKA 162
Query: 155 NPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKV 213
NP P++ +S +G I L++ PLR CH C D+G + IAY F K FIG++V
Sbjct: 163 NPQATPFAPAQSAGASPLDNGGIRLLYRTPLRDCHACPDVGQLQIAYDFDAKRNFIGQQV 222
Query: 214 F 214
Sbjct: 223 V 223
>gi|190575727|ref|YP_001973572.1| hypothetical protein Smlt3880 [Stenotrophomonas maltophilia K279a]
gi|190013649|emb|CAQ47284.1| hypothetical protein Smlt3880 [Stenotrophomonas maltophilia K279a]
Length = 227
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 7/181 (3%)
Query: 35 FSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYV 94
+SE VW GD Q + A D C+ +++ G + EA+ AA+ L E YV
Sbjct: 49 WSEAVVWDGDLNACRQGENAATRD-----CLRDAMRAGGASAEAITAAEQLSSAGELAYV 103
Query: 95 SSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLR 154
+++ + +GI V+YP+RAN N GT L+ G ID++ + + P ++ +
Sbjct: 104 TAWHENEGLGIATVEYPFRANTNEGTRLVDASGKR-IDVDAVQLDDTLRADPAVQELLKA 162
Query: 155 NPGVFPYSAGHFVKSSH-KDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTTKGAFIGRKV 213
NP P++ ++ + G I L++ PLR CH C D+G + IAY F K FIG++V
Sbjct: 163 NPQATPFAPAQSAGATPLEGGGIRLLYRTPLRDCHACPDVGQLQIAYDFDAKRNFIGQQV 222
Query: 214 F 214
Sbjct: 223 V 223
>gi|303246407|ref|ZP_07332686.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
gi|302492117|gb|EFL51992.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
Length = 212
Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 16/186 (8%)
Query: 38 KAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSY 97
K VWK + C + ++ +C+ +++TG T EAL + L+ GY+ ++
Sbjct: 34 KGVWKLPEAAWTDCLQKA---QDATDCLARIMRQTGATPEALAVNKMLDG---EGYMETF 87
Query: 98 RKEALIGIVEVQYPYRANENSGTLLI---PTVGSHIIDINDSSVHQLYDSSPIAKDFVLR 154
++ + + + +P RAN N+ T L+ PT+ S I+ D + + P
Sbjct: 88 QEMGRVDVAVMVFPLRANTNAVTYLVNGSPTLVSSEIEPADLPLA----ADPTYAALQKA 143
Query: 155 NPGV--FPYSAGHFVKSSHKDGLIELIFSYPL-RSCHGCEDIGFMDIAYKFTTKGAFIGR 211
+P + +P G + G +F+YPL CH C +G ++ F G + G
Sbjct: 144 HPELMFWPTGEGPSAVDTPPGGGQGFVFTYPLLNGCHACAVLGQALLSLDFGPDGTYHGP 203
Query: 212 KVFGIR 217
++ +
Sbjct: 204 RLLRVE 209
>gi|298571448|gb|ADI87788.1| hypothetical protein LW5_0300 [uncultured Nitrospirae bacterium
MY4-5C]
Length = 188
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 8/140 (5%)
Query: 92 GYVSSYRKEALIGIVEVQYPYRANENSGT--LLIPTVGSHIIDINDSSVHQL-YDSSPIA 148
V S+ + ++ ++ V Y Y + E++ T ++ II + +++ ++ P
Sbjct: 51 AMVMSFSELGIVDLITVSYSYTSGEDNTTVEHVLVNGAPSIIPVEKTAIAKINIKDDPKY 110
Query: 149 KDFVLRNPGV--FPYSAGHFVKSSHKDGLIELIFSYPLRS-CHGCEDIGFMDIAYKFTTK 205
F+ P + P A + + G F + LR C C G+ IA+ F
Sbjct: 111 SKFITMTPNIIFSPVGAKFEKVQTVEAGTQRYYFLFVLRDGCDDCNAAGYARIAFDFDKD 170
Query: 206 GAFIGRKVFGIRNDNAKYPM 225
G FI KV ++ + P+
Sbjct: 171 GNFI--KVVLVKLMKTRQPL 188
>gi|315122772|ref|YP_004063261.1| hypothetical protein CKC_05135 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496174|gb|ADR52773.1| hypothetical protein CKC_05135 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 213
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 69/196 (35%), Positives = 107/196 (54%), Gaps = 10/196 (5%)
Query: 23 QQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAA 82
++++ P + +EK+VW D +C D C+I I+K+G + EAL+A
Sbjct: 26 KENAPPPHSASVINEKSVWHDDLAN--KCASYETRDI----CLIKEIEKSG-SIEALKAV 78
Query: 83 QYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLY 142
QYL K E GYV S+RKE IGI E++YP+RAN N+ TLLIP G I ++
Sbjct: 79 QYLNKTREMGYVYSFRKEGPIGIAEIEYPFRANTNTTTLLIPPAGK---PIYTEDIYDDL 135
Query: 143 DSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPLRSCHGCEDIGFMDIAYKF 202
+S + DF ++P + +K+ + IE IFS+ + +CHGCE+ + I+YKF
Sbjct: 136 LTSKVWLDFKKQHPYSNIQDSAVLMKTEKNNDDIEFIFSFRVGTCHGCEETARVYISYKF 195
Query: 203 TTKGAFIGRKVFGIRN 218
T +G FI + ++
Sbjct: 196 THEGVFIKNNILYVKI 211
>gi|29655154|ref|NP_820846.1| hypothetical protein CBU_1869 [Coxiella burnetii RSA 493]
gi|29542423|gb|AAO91360.1| hypothetical exported protein [Coxiella burnetii RSA 493]
Length = 217
Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 12/167 (7%)
Query: 60 NFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSG 119
N+ C+ + + +++L E G + R I I+ Y Y A++ +G
Sbjct: 57 NYKLCVHEVLVQHPQCKQSLTFFNSTEG----GIFNKIRSYKNIDIILADYVYIADQGTG 112
Query: 120 TLLIPTVGSHII---DINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLI 176
L+ G I+ I + + + IAK + + + ++
Sbjct: 113 YFLVTHSGQFIVLPLPITKKQLKTMSNYEVIAKKY--PHVNAWQILDFPQEIKLPRN-RY 169
Query: 177 ELIFSYPLRS-CHGCEDIGFMDIAYKFTTKG-AFIGRKVFGIRNDNA 221
L+F+ L+ C+ C G + +AY F+ G F G KV + N
Sbjct: 170 RLVFTQQLKDGCNACALAGTVKVAYDFSDDGKHFDGIKVLKLSPQNT 216
>gi|153206217|ref|ZP_01945480.1| hypothetical protein A35_A2019 [Coxiella burnetii 'MSU Goat Q177']
gi|154707300|ref|YP_001423531.1| hypothetical protein CBUD_0100 [Coxiella burnetii Dugway 5J108-111]
gi|165919288|ref|ZP_02219374.1| hypothetical protein COXBURSA334_0023 [Coxiella burnetii RSA 334]
gi|212217843|ref|YP_002304630.1| hypothetical protein CbuK_0168 [Coxiella burnetii CbuK_Q154]
gi|120577347|gb|EAX33971.1| hypothetical protein A35_A2019 [Coxiella burnetii 'MSU Goat Q177']
gi|154356586|gb|ABS78048.1| hypothetical exported protein [Coxiella burnetii Dugway 5J108-111]
gi|165917011|gb|EDR35615.1| hypothetical protein COXBURSA334_0023 [Coxiella burnetii RSA 334]
gi|212012105|gb|ACJ19485.1| hypothetical exported protein [Coxiella burnetii CbuK_Q154]
Length = 217
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 12/167 (7%)
Query: 60 NFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSG 119
N+ C+ + + +++L E G R I I+ Y Y A++ +G
Sbjct: 57 NYKLCVHEVLVQHPQCKQSLTFFNSTEG----GIFKKIRSYKNIDIILADYVYIADQGTG 112
Query: 120 TLLIPTVGSHI---IDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLI 176
L+ G I + I + + + IAK + + + ++
Sbjct: 113 YFLVTHSGQFIALPLPITKKQLKTMSNYEVIAKKY--PHVNAWQILDFPQEIKLPRN-RY 169
Query: 177 ELIFSYPLRS-CHGCEDIGFMDIAYKFTTKG-AFIGRKVFGIRNDNA 221
L+F+ L+ C+ C G + +AY F+ G F G KV + N
Sbjct: 170 RLVFTQQLKDGCNACALAGTVKVAYDFSDDGKHFDGIKVLKLSPQNT 216
>gi|212211894|ref|YP_002302830.1| hypothetical protein CbuG_0244 [Coxiella burnetii CbuG_Q212]
gi|212010304|gb|ACJ17685.1| hypothetical exported protein [Coxiella burnetii CbuG_Q212]
Length = 224
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 12/167 (7%)
Query: 60 NFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSG 119
N+ C+ + + +++L E G + R I I+ Y Y A++ +G
Sbjct: 64 NYKLCVHEVLVQHPQCKQSLTFFNSTEG----GIFNKIRSYKNIDIILADYVYIADQGTG 119
Query: 120 TLLIPTVGSHI---IDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLI 176
L+ G I + I + + + IAK + + + ++
Sbjct: 120 YFLVTHSGQFIALPLPITKKQLKTMSNYEVIAKKY--PHVNAWQILDFPQEIKLPRN-RY 176
Query: 177 ELIFSYPLRS-CHGCEDIGFMDIAYKFTTKG-AFIGRKVFGIRNDNA 221
L+F+ L+ C+ C G + +AY F+ G F G KV + N
Sbjct: 177 RLVFTQQLKDGCNACALAGTVKVAYDFSDDGKHFDGIKVLKLSPQNT 223
>gi|161830147|ref|YP_001597687.1| hypothetical protein COXBURSA331_A2072 [Coxiella burnetii RSA 331]
gi|161762014|gb|ABX77656.1| hypothetical protein COXBURSA331_A2072 [Coxiella burnetii RSA 331]
Length = 217
Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 12/167 (7%)
Query: 60 NFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSG 119
N+ C+ + + +++L E G + R I I+ Y Y A++ +G
Sbjct: 57 NYKLCVHEVLVQHPQCKQSLTFFNSTEG----GIFNKIRSYKNIDIILADYVYIADQGTG 112
Query: 120 TLLIPTVGSHI---IDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLI 176
L+ G I + I + + + IAK + + + ++
Sbjct: 113 YFLVTHSGQFIALPLPITKKQLKTMSNYEVIAKKY--PHVNAWQILDFPQEIKLPRN-RY 169
Query: 177 ELIFSYPLRS-CHGCEDIGFMDIAYKFTTKG-AFIGRKVFGIRNDNA 221
L+F+ L+ C+ C G + +AY F+ G F G KV + N
Sbjct: 170 RLVFTQQLKDGCNACALAGTVKVAYDFSDDGKHFDGIKVLKLSPQNT 216
>gi|311104675|ref|YP_003977528.1| transcription-repair coupling factor [Achromobacter xylosoxidans
A8]
gi|310759364|gb|ADP14813.1| transcription-repair coupling factor [Achromobacter xylosoxidans
A8]
Length = 1154
Score = 40.9 bits (94), Expect = 0.13, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 15/165 (9%)
Query: 28 PQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEK 87
PQ +L F +E ++ G + T + KR E N + + + G
Sbjct: 446 PQANLAFLTENDLYPGLATTGRRGKRDQERASNVEAMVRDLSELRAGDP---VVHAQHGI 502
Query: 88 YLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHII------DINDSSVHQL 141
G V+ E + + ++Y N TL +P H+I D + +HQL
Sbjct: 503 GRYHGLVNMDMGEGGMEFLHLEYA-----NGSTLYVPVSQLHVIARYSGADPEAAPLHQL 557
Query: 142 YDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPLRS 186
S K V +A + + F+ PL
Sbjct: 558 -GSGQWDKARRKAARQVRDTAAELLALYAQRAAREGYAFNLPLND 601
>gi|293603936|ref|ZP_06686351.1| transcription-repair coupling factor [Achromobacter piechaudii ATCC
43553]
gi|292817773|gb|EFF76839.1| transcription-repair coupling factor [Achromobacter piechaudii ATCC
43553]
Length = 1160
Score = 40.1 bits (92), Expect = 0.26, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 15/165 (9%)
Query: 28 PQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEK 87
PQ +L F +E ++ G + T + KR E N + + + G
Sbjct: 452 PQANLAFLTENDLYPGLATTGRRGKRDQERASNVEAMVRDLSELRAGDP---VVHAQHGI 508
Query: 88 YLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHII------DINDSSVHQL 141
G V+ E + + ++Y N TL +P H+I D + + +HQL
Sbjct: 509 GRYHGLVNMDMGEGEMEFLHLEYA-----NGSTLYVPVSQLHVIARYSGADPDAAPLHQL 563
Query: 142 YDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPLRS 186
S K V +A + + F+ PL
Sbjct: 564 -GSGQWDKARRKAAKQVRDTAAELLALYAQRAAREGFAFNLPLND 607
>gi|317402005|gb|EFV82605.1| transcription-repair coupling factor [Achromobacter xylosoxidans
C54]
Length = 1160
Score = 38.6 bits (88), Expect = 0.69, Method: Composition-based stats.
Identities = 35/178 (19%), Positives = 58/178 (32%), Gaps = 15/178 (8%)
Query: 15 GVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDNCIITSIKKTGG 74
G++ A PQ L F +E ++ G + T + KR E N + + + G
Sbjct: 439 GIVAAPLATGFELPQAGLAFLTENDLYPGVAATGRRGKRDQERASNVEAMVRDLSELRAG 498
Query: 75 TQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHII--- 131
G V+ E + + ++Y N TL +P H+I
Sbjct: 499 DP---VVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYA-----NGSTLYVPVSQLHVIARY 550
Query: 132 ---DINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPLRS 186
D + +HQL S K V +A + + F+ PL
Sbjct: 551 SGADPEAAPLHQL-GSGQWDKARRKAAKQVRDTAAELLALYAQRAAREGFAFNLPLND 607
>gi|302404160|ref|XP_002999918.1| exoglucanase-6A [Verticillium albo-atrum VaMs.102]
gi|261361420|gb|EEY23848.1| exoglucanase-6A [Verticillium albo-atrum VaMs.102]
Length = 395
Score = 38.6 bits (88), Expect = 0.72, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 5/112 (4%)
Query: 94 VSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQL----YDSSPIAK 149
V++Y L + PY NE TL IP + + +V ++ + +S
Sbjct: 28 VATYEGNPLADVQLYPDPYYVNEIE-TLAIPQIEDEELVAAAKAVTKISTFQWLTSDKIS 86
Query: 150 DFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPLRSCHGCEDIGFMDIAYK 201
L N + A + +S +++++P R C G + +A
Sbjct: 87 KLDLLNSTLHEIRAANDAGASPPYAATIVVYNFPDRDCSAKASAGELILAED 138
>gi|302336601|ref|YP_003801807.1| periplasmic binding protein/LacI transcriptional regulator
[Spirochaeta smaragdinae DSM 11293]
gi|301633786|gb|ADK79213.1| periplasmic binding protein/LacI transcriptional regulator
[Spirochaeta smaragdinae DSM 11293]
Length = 317
Score = 38.6 bits (88), Expect = 0.73, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 7/134 (5%)
Query: 44 DSETYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALI 103
D T Q + F N + II + T G A+R A+ + V++ + +
Sbjct: 72 DLNT--QTSQMENFIANGVDIIILNAADTAGIAPAVRKAKEAGIIVVAADVNA---DGGV 126
Query: 104 GIVEVQYPYRANENSGTLLIPTVGSH--IIDINDSSVHQLYDSSPIAKDFVLRNPGVFPY 161
Y+A +G ++ +G I+ IN V + D AK+ + +NPG+
Sbjct: 127 DATVTSNNYQAGTQAGEYIVKRLGGKGNIVIINGPPVSAVIDRVNGAKEVLAKNPGIKIL 186
Query: 162 SAGHFVKSSHKDGL 175
S + + GL
Sbjct: 187 SDNQNAGGNREGGL 200
>gi|99080913|ref|YP_613067.1| hypothetical protein TM1040_1072 [Ruegeria sp. TM1040]
gi|99037193|gb|ABF63805.1| hypothetical protein TM1040_1072 [Ruegeria sp. TM1040]
Length = 1306
Score = 38.6 bits (88), Expect = 0.78, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 28/91 (30%)
Query: 49 FQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEV 108
A E D + + EAL ++ E + + + V
Sbjct: 810 RHGFDAIERDGKLIFRLRDGLHALNLEPEALAVLPEMDGDQEQSRMPEAELMGRVRLRFV 869
Query: 109 QYPYRANENSGTLLIPTVGSHIIDINDSSVH 139
++ + + ++P +H + ND +
Sbjct: 870 EWGGSHDTVAEEAVLPDEATHAVSQNDLPMA 900
>gi|119444391|gb|ABL75419.1| cassette chromosome recombinase A [Staphylococcus aureus]
Length = 453
Score = 38.6 bits (88), Expect = 0.78, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 142 YDSSPIAKDFVLRN-PGVFPYSAGHFVKSSHKDGLIELIFSYPLRSCHGCEDIGFMDIAY 200
+ + P + YS GHF+ ++ + I+ ++ + L+ +G+ I+
Sbjct: 139 IREKAKQGKLITTHAPFGYHYSKGHFIVNAEEAPTIKAVYRWYLQG------LGYKKISQ 192
Query: 201 KFTTKGAFIGRKVFGIRN 218
K FI RK + +RN
Sbjct: 193 KLDKDMNFISRKPYQVRN 210
>gi|119568642|gb|EAW48257.1| hypothetical protein FLJ34503 [Homo sapiens]
Length = 161
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 26/75 (34%)
Query: 128 SHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPLRSC 187
+ S++ +SP+ F+ + V+P VKS K G + C
Sbjct: 24 PRVFSPTASALAVACQTSPLIFAFLPASAFVYPRRQDPTVKSERKTGGSRFSSRCCVSQC 83
Query: 188 HGCEDIGFMDIAYKF 202
H +D+ F
Sbjct: 84 HLLSSQRQLDVVTDF 98
>gi|221195885|ref|ZP_03568938.1| excinuclease ABC, A subunit [Atopobium rimae ATCC 49626]
gi|221184359|gb|EEE16753.1| excinuclease ABC, A subunit [Atopobium rimae ATCC 49626]
Length = 959
Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 50/169 (29%), Gaps = 12/169 (7%)
Query: 47 TYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIV 106
Y KR E +IK TG + L+ + ++ +V
Sbjct: 599 AYLTGKRQIRLPEKRRKPGRGAIKITGASANNLKGVTAKIELGTLTLITGVSGSGKSSLV 658
Query: 107 E----------VQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNP 156
VQ+ RA L + +IDI+ S + + S+P + +
Sbjct: 659 TDTLAPALTNAVQHSKRAVGEYKKLSGIDLIDKVIDIDQSPIGRTPRSNPATYIGLWDDL 718
Query: 157 GVFPYSAGHFVKSSHKDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTTK 205
S + G F+ P C C+ G + I F
Sbjct: 719 RALYASVPESRARGYSAG--RFSFNVPGGRCEACKGDGQIKIEMNFLPD 765
>gi|326319125|ref|YP_004236797.1| threonyl/alanyl tRNA synthetase SAD [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375961|gb|ADX48230.1| Threonyl/alanyl tRNA synthetase SAD [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 255
Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 13/108 (12%)
Query: 107 EVQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHF 166
V YP + ++ G + I D+ + + P A + PG P + G
Sbjct: 42 TVFYPLGGGQAGDAGVLVRAGGREVPIADTRKAKDAEGKPTAAIVHVPAPGAEPPAVGEE 101
Query: 167 VKSSHKDGLIELIFSY-------------PLRSCHGCEDIGFMDIAYK 201
V + + + P+ C D +D
Sbjct: 102 VTARIDWERRHRLMRFHTTTHLLCHLVAQPVNGCSVTPDAARLDFHMD 149
>gi|284048717|ref|YP_003399056.1| translation elongation factor Ts [Acidaminococcus fermentans DSM
20731]
gi|283952938|gb|ADB47741.1| translation elongation factor Ts [Acidaminococcus fermentans DSM
20731]
Length = 293
Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 5/108 (4%)
Query: 51 CKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQY 110
CK+A + I +++ G ++ A +A++ + L YV K A++ V +
Sbjct: 22 CKKALTATNGDMDQAIDYLREKGLSKAAKKASRVAAEGLVEAYVDEANKVAVLVEVNCET 81
Query: 111 PYRANENSGTLLIPTVGSHI-----IDINDSSVHQLYDSSPIAKDFVL 153
+ AN + L+ +V HI D+ + + + + +
Sbjct: 82 DFVANTDEYKNLVLSVAKHIAAHKPADVAELNDQTFEGTDKKVSEVIT 129
>gi|87309210|ref|ZP_01091347.1| possible conserved lipoprotein lpqp [Blastopirellula marina DSM
3645]
gi|87288201|gb|EAQ80098.1| possible conserved lipoprotein lpqp [Blastopirellula marina DSM
3645]
Length = 250
Score = 35.9 bits (81), Expect = 4.2, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 71/186 (38%), Gaps = 24/186 (12%)
Query: 4 KIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQCKRAHEFDENFDN 63
++ +++ ++L+G L Y++ S + ++ E G+S +Y A D
Sbjct: 12 RVIVVLAMLLIGFGLVVYYRSSRNERPFIVVSIESINLDGESRSYRLTVPASRPDAPLP- 70
Query: 64 CIITSIKKTGGTQEALRAAQYLEKYLEPG-----YVSSYRKE-ALIGIVEVQYPYRANEN 117
I+ ++ G + E++ L++ G Y +Y+ ++GI P +N
Sbjct: 71 -IVVALHGIGDSTESMAHYSQLDRLAARGECYVVYPEAYKAMWNVVGIS----PENLAQN 125
Query: 118 SGTLLIPTVGSHI---IDINDSSVHQLYDSSPIAKDF---------VLRNPGVFPYSAGH 165
I + + + +DI+ + + + + A+ V+ + G P
Sbjct: 126 RDLRFIDELLARLRNQLDIDGVYLIGMSNGATFAQALLFTRTDIDAVVAHSGSKPKGLEP 185
Query: 166 FVKSSH 171
+S
Sbjct: 186 SDNASP 191
>gi|298293958|ref|YP_003695897.1| DNA mismatch repair protein MutS [Starkeya novella DSM 506]
gi|296930469|gb|ADH91278.1| DNA mismatch repair protein MutS [Starkeya novella DSM 506]
Length = 930
Score = 35.9 bits (81), Expect = 4.3, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 36/125 (28%), Gaps = 17/125 (13%)
Query: 65 IITSIKKTGGTQEAL----------RAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRA 114
+I + T++AL A+ E GYV + A I + R
Sbjct: 143 VIRLVTPGTLTEDALLDARRENVLAAVARVRGGDGEDGYVYA---LAFADISTGSF--RV 197
Query: 115 NENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDG 174
E L + I+ + + P K P V P F +S +
Sbjct: 198 AETDALRLAADLAR--IEPAELLLADAVYDEPAFKAVWRALPAVTPLPKEAFDGASAERR 255
Query: 175 LIELI 179
L
Sbjct: 256 LAGFF 260
>gi|220914560|ref|YP_002489869.1| phosphoglycerate mutase [Arthrobacter chlorophenolicus A6]
gi|219861438|gb|ACL41780.1| Phosphoglycerate mutase [Arthrobacter chlorophenolicus A6]
Length = 224
Score = 35.9 bits (81), Expect = 4.9, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 18/133 (13%)
Query: 29 QNHLLFFSEKAVWK-GDSETYF-QCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQY-- 84
++H + W GD +T H F E FD I I++TGG + + +
Sbjct: 95 ESHKRYMGTVISWAAGDLDTRMPAGPDGHSFFERFDAAIARVIERTGGQGDTVAVVSHGA 154
Query: 85 -------LEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHIIDINDSS 137
L ++ A GIV ++ N +SG LI GS + +
Sbjct: 155 AIRTWAGLRAEGIDHEFAAKHVLANTGIVALE----GNPDSGWKLIHWAGS---PVGGLA 207
Query: 138 VHQLYDSSPIAKD 150
+ P +D
Sbjct: 208 LADPTAEDPTGQD 220
>gi|320586744|gb|EFW99407.1| serine/threonine-protein kinase-like protein [Grosmannia clavigera
kw1407]
Length = 1347
Score = 35.5 bits (80), Expect = 6.5, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 5/107 (4%)
Query: 95 SSYRKEALIGIVEVQYPYRANE-NSGTLLIPTVGSHII---DINDSSVHQLYDSSPIAKD 150
S + E + IV + PY + L II D + V +D S
Sbjct: 47 SGFTDEDIADIVCILVPYSPKTRSEAARLARQGSPFIIGREDAENVDVDYPFDDSAGNFS 106
Query: 151 FVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPLRSCHGCEDIGFMD 197
+PG P + S+ K+ L F +SC C D +
Sbjct: 107 LTSADPGSGPVFV-LRLSSTVKNPLQGFTFGRNPKSCDICFDSDSLR 152
>gi|19549003|ref|NP_599045.1| hypothetical protein SfVp13 [Enterobacteria phage SfV]
gi|19483751|gb|AAL89422.1| unknown [Enterobacteria phage SfV]
Length = 89
Score = 34.7 bits (78), Expect = 10.0, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 79 LRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPTVGSHII----DIN 134
L + + + E V + + + + E+ YPY+ N++ L+ V S I +
Sbjct: 4 LELKKPITAHGETLSVLEFDEPSGKDVRELGYPYQMNQDESVRLLAHVVSKYIVRLAKVP 63
Query: 135 DSSVHQLYDSSPIAKDFVLR 154
SSV Q+ + A +++
Sbjct: 64 QSSVDQMSPADLNAAAWLVA 83
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.315 0.129 0.342
Lambda K H
0.267 0.0398 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,565,684,343
Number of Sequences: 14124377
Number of extensions: 46126194
Number of successful extensions: 166927
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 166895
Number of HSP's gapped (non-prelim): 36
length of query: 229
length of database: 4,842,793,630
effective HSP length: 134
effective length of query: 95
effective length of database: 2,950,127,112
effective search space: 280262075640
effective search space used: 280262075640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.1 bits)