RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780965|ref|YP_003065378.1| hypothetical protein CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62] (229 letters) >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} (A:128-431) Length = 304 Score = 28.1 bits (61), Expect = 1.1 Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 1/64 (1%) Query: 44 DSETYFQCKRAHE-FDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEAL 102 D K E ++ N I+ + G E L A + + +S E Sbjct: 189 DDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETE 248 Query: 103 IGIV 106 + Sbjct: 249 DATI 252 >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A (A:126-371) Length = 246 Score = 27.9 bits (61), Expect = 1.2 Identities = 8/73 (10%), Positives = 17/73 (23%), Gaps = 5/73 (6%) Query: 21 YFQQSSTPQNHLLFFSEKAVWKG----DSETYFQCKR-AHEFDENFDNCIITSIKKTGGT 75 ++ + T + L+ + G E + + GG Sbjct: 95 HWIEEPTIPDDLVGNARIVRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGY 154 Query: 76 QEALRAAQYLEKY 88 + A E Sbjct: 155 TTFRKVAALAEAN 167 >3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B (A:1-101,A:323-407) Length = 186 Score = 27.9 bits (62), Expect = 1.2 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 4/51 (7%) Query: 1 MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQC 51 MK II ++ G+I A F + + +EK ++ Sbjct: 1 MKKIALIIGSMIAGGIISAAGFTWVAKAEPP----AEKTSTAERKILFWYD 47 >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* (A:) Length = 286 Score = 27.2 bits (59), Expect = 1.8 Identities = 5/53 (9%), Positives = 13/53 (24%) Query: 72 TGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIP 124 TG L A + ++ + + + + T + Sbjct: 230 TGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITT 282 >2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP} (A:1-36,A:238-386) Length = 185 Score = 27.1 bits (60), Expect = 1.9 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 15/102 (14%) Query: 136 SSVHQLYDSSPIAKDFVLRNPGVF-PYS------AGHFVKSSHKDGLIELIFSYPLRSCH 188 S VH + +S+ K + NPG F P + + G EL + Sbjct: 72 SPVH-VLNSTAXYKFLITPNPGYFQPANPKISDEYRFVTLRVIEGGRXELADTTT-GHIG 129 Query: 189 GCEDIGFMDIAYKFTTKGAFIGRKVFGI------RNDNAKYP 224 + F + +T + G+ R+D K P Sbjct: 130 DLTEPTFFGLTAHYTDAPGTLDYHALGLVYAYVERDDGVKIP 171 >2w2g_A Non-structural protein 3; thiol protease, RNA replication, viral replicase, RNA-binding, zinc-finger, metal-binding, transmembrane; 2.22A {Sars coronavirus} PDB: 2wct_A 2jwi_A 2jwj_A 2jzf_A 2rnk_A 2jzd_A 2jze_A (A:1-132) Length = 132 Score = 26.6 bits (58), Expect = 3.1 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%) Query: 64 CIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIG 104 C++ KK GGT E L ++ L+K Y+++Y + G Sbjct: 68 CVVIPSKKAGGTTEML--SRALKKVPVDEYITTYPGQGCAG 106 >2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* (A:1-112) Length = 112 Score = 26.4 bits (58), Expect = 3.4 Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 2/64 (3%) Query: 145 SPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTT 204 + F + P + +G FV D + I S ++ Sbjct: 28 TDTLFSFRVTRPQTLRFRSGEFVMIGLLDDNGKPIMRAY--SIASPAWDEELEFYSIKVP 85 Query: 205 KGAF 208 G Sbjct: 86 DGPL 89 >2qjj_A Mandelate racemase/muconate lactonizing enzyme; mannonate dehydratase, enolase superfamily, lyase; 1.80A {Novosphingobium aromaticivorans} PDB: 2qjn_A* 2qjm_A* (A:109-402) Length = 294 Score = 26.5 bits (57), Expect = 3.5 Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 1/45 (2%) Query: 45 SETYFQCKRAHEF-DENFDNCIITSIKKTGGTQEALRAAQYLEKY 88 E + A + + I ++ GG R A Y Sbjct: 153 GEIFNTIWDAKDLIQNQLIDYIRATVVGAGGLTHLRRIADLASLY 197 >2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* (A:1-99) Length = 99 Score = 25.9 bits (57), Expect = 4.7 Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 3/64 (4%) Query: 145 SPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTT 204 + F + G FV + L+ +Y + S + ++ Sbjct: 15 NDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYE---EHLEFFSIKVP 71 Query: 205 KGAF 208 G Sbjct: 72 DGPL 75 >2akh_Z Preprotein translocase SECE subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Z (Z:) Length = 111 Score = 25.8 bits (57), Expect = 5.8 Identities = 5/25 (20%), Positives = 14/25 (56%) Query: 4 KIAIIILLVLVGVILAFYFQQSSTP 28 K +++ L+LV ++ + ++ P Sbjct: 2 KWVVVVALLLVAIVGNYLYRDIMLP 26 >2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, mutarotase, YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A (A:) Length = 309 Score = 25.2 bits (54), Expect = 8.2 Identities = 5/40 (12%), Positives = 8/40 (20%), Gaps = 3/40 (7%) Query: 193 IGFMDIAYKFTTK---GAFIGRKVFGIRNDNAKYPMHFFI 229 + + T G + P H F Sbjct: 74 LWLSNNTPFKTGVALRGGVPICWPWFGPAAQQGLPSHGFA 113 >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} (A:104-267) Length = 164 Score = 24.8 bits (53), Expect = 9.8 Identities = 4/42 (9%), Positives = 9/42 (21%) Query: 47 TYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKY 88 + E ++ TG ++ Q Sbjct: 113 ESLREPDFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHAL 154 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.324 0.140 0.423 Gapped Lambda K H 0.267 0.0598 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,781,790 Number of extensions: 77746 Number of successful extensions: 195 Number of sequences better than 10.0: 1 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 15 Length of query: 229 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 143 Effective length of database: 2,048,819 Effective search space: 292981117 Effective search space used: 292981117 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 53 (24.5 bits)