RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780965|ref|YP_003065378.1| hypothetical protein
CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62]
(229 letters)
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia
coli} (A:128-431)
Length = 304
Score = 28.1 bits (61), Expect = 1.1
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Query: 44 DSETYFQCKRAHE-FDENFDNCIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEAL 102
D K E ++ N I+ + G E L A + + +S E
Sbjct: 189 DDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETE 248
Query: 103 IGIV 106
+
Sbjct: 249 DATI 252
>2ovl_A Putative racemase; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.13A {Streptomyces coelicolor A3}
PDB: 3ck5_A (A:126-371)
Length = 246
Score = 27.9 bits (61), Expect = 1.2
Identities = 8/73 (10%), Positives = 17/73 (23%), Gaps = 5/73 (6%)
Query: 21 YFQQSSTPQNHLLFFSEKAVWKG----DSETYFQCKR-AHEFDENFDNCIITSIKKTGGT 75
++ + T + L+ + G E + + GG
Sbjct: 95 HWIEEPTIPDDLVGNARIVRESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGY 154
Query: 76 QEALRAAQYLEKY 88
+ A E
Sbjct: 155 TTFRKVAALAEAN 167
>3h9i_A Cation efflux system protein CUSB; three-helix bundle,
beta barrel, copper, copper transport, ION transport,
transport, transport protein; 3.40A {Escherichia coli
k-12} PDB: 3h94_A 3h9t_B (A:1-101,A:323-407)
Length = 186
Score = 27.9 bits (62), Expect = 1.2
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 1 MKYKIAIIILLVLVGVILAFYFQQSSTPQNHLLFFSEKAVWKGDSETYFQC 51
MK II ++ G+I A F + + +EK ++
Sbjct: 1 MKKIALIIGSMIAGGIISAAGFTWVAKAEPP----AEKTSTAERKILFWYD 47
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase,
phosphoryl transfer, transferase; 1.53A {Streptomyces
wedmorensis} PDB: 3d41_A* (A:)
Length = 286
Score = 27.2 bits (59), Expect = 1.8
Identities = 5/53 (9%), Positives = 13/53 (24%)
Query: 72 TGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIP 124
TG L A + ++ + + + + T +
Sbjct: 230 TGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITT 282
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A
{Thermococcus SP} (A:1-36,A:238-386)
Length = 185
Score = 27.1 bits (60), Expect = 1.9
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 15/102 (14%)
Query: 136 SSVHQLYDSSPIAKDFVLRNPGVF-PYS------AGHFVKSSHKDGLIELIFSYPLRSCH 188
S VH + +S+ K + NPG F P + + G EL +
Sbjct: 72 SPVH-VLNSTAXYKFLITPNPGYFQPANPKISDEYRFVTLRVIEGGRXELADTTT-GHIG 129
Query: 189 GCEDIGFMDIAYKFTTKGAFIGRKVFGI------RNDNAKYP 224
+ F + +T + G+ R+D K P
Sbjct: 130 DLTEPTFFGLTAHYTDAPGTLDYHALGLVYAYVERDDGVKIP 171
>2w2g_A Non-structural protein 3; thiol protease, RNA replication,
viral replicase, RNA-binding, zinc-finger,
metal-binding, transmembrane; 2.22A {Sars coronavirus}
PDB: 2wct_A 2jwi_A 2jwj_A 2jzf_A 2rnk_A 2jzd_A 2jze_A
(A:1-132)
Length = 132
Score = 26.6 bits (58), Expect = 3.1
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 64 CIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIG 104
C++ KK GGT E L ++ L+K Y+++Y + G
Sbjct: 68 CVVIPSKKAGGTTEML--SRALKKVPVDEYITTYPGQGCAG 106
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H)
reductase, flavoproteins, electron transfer,
oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter
capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
(A:1-112)
Length = 112
Score = 26.4 bits (58), Expect = 3.4
Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 2/64 (3%)
Query: 145 SPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTT 204
+ F + P + +G FV D + I S ++
Sbjct: 28 TDTLFSFRVTRPQTLRFRSGEFVMIGLLDDNGKPIMRAY--SIASPAWDEELEFYSIKVP 85
Query: 205 KGAF 208
G
Sbjct: 86 DGPL 89
>2qjj_A Mandelate racemase/muconate lactonizing enzyme; mannonate
dehydratase, enolase superfamily, lyase; 1.80A
{Novosphingobium aromaticivorans} PDB: 2qjn_A* 2qjm_A*
(A:109-402)
Length = 294
Score = 26.5 bits (57), Expect = 3.5
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 45 SETYFQCKRAHEF-DENFDNCIITSIKKTGGTQEALRAAQYLEKY 88
E + A + + I ++ GG R A Y
Sbjct: 153 GEIFNTIWDAKDLIQNQLIDYIRATVVGAGGLTHLRRIADLASLY 197
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A
{Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* (A:1-99)
Length = 99
Score = 25.9 bits (57), Expect = 4.7
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 3/64 (4%)
Query: 145 SPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPLRSCHGCEDIGFMDIAYKFTT 204
+ F + G FV + L+ +Y + S + ++
Sbjct: 15 NDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYE---EHLEFFSIKVP 71
Query: 205 KGAF 208
G
Sbjct: 72 DGPL 75
>2akh_Z Preprotein translocase SECE subunit; protein transport,
translocation, transmembrane, transport; 14.90A
{Escherichia coli} PDB: 2aki_Z (Z:)
Length = 111
Score = 25.8 bits (57), Expect = 5.8
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 4 KIAIIILLVLVGVILAFYFQQSSTP 28
K +++ L+LV ++ + ++ P
Sbjct: 2 KWVVVVALLLVAIVGNYLYRDIMLP 26
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate,
mutarotase, YEAD, GALM, sugar phosphate, isomerase;
1.90A {Salmonella typhimurium} PDB: 2htb_A (A:)
Length = 309
Score = 25.2 bits (54), Expect = 8.2
Identities = 5/40 (12%), Positives = 8/40 (20%), Gaps = 3/40 (7%)
Query: 193 IGFMDIAYKFTTK---GAFIGRKVFGIRNDNAKYPMHFFI 229
+ + T G + P H F
Sbjct: 74 LWLSNNTPFKTGVALRGGVPICWPWFGPAAQQGLPSHGFA 113
>1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase
superfamily, TIM barrel, capping alpha+beta domain,
lyase; HET: 164; 1.62A {Escherichia coli} (A:104-267)
Length = 164
Score = 24.8 bits (53), Expect = 9.8
Identities = 4/42 (9%), Positives = 9/42 (21%)
Query: 47 TYFQCKRAHEFDENFDNCIITSIKKTGGTQEALRAAQYLEKY 88
+ E ++ TG ++ Q
Sbjct: 113 ESLREPDFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHAL 154
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.324 0.140 0.423
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,781,790
Number of extensions: 77746
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 15
Length of query: 229
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 143
Effective length of database: 2,048,819
Effective search space: 292981117
Effective search space used: 292981117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)