RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780965|ref|YP_003065378.1| hypothetical protein
CLIBASIA_04330 [Candidatus Liberibacter asiaticus str. psy62]
(229 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 41.9 bits (98), Expect = 1e-04
Identities = 36/237 (15%), Positives = 66/237 (27%), Gaps = 112/237 (47%)
Query: 17 ILAFYF-------QQSSTPQNHLLFFSEK-------AVW--KGDSETYFQCKRAHEFDEN 60
++ Y + N LF + A++ +G+++ YF+ E +
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE-----ELRDL 176
Query: 61 FD--NCIITSIKKTGGT--QEALRAAQYLEKY----------LE-----PG--YVSSYRK 99
+ + ++ + K E +R EK LE P Y+ S
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS--- 233
Query: 100 EA-----LIGIVE-VQYPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVL 153
LIG+++ Y V + ++
Sbjct: 234 -IPISCPLIGVIQLAHY--------------VVTAKLLGF-------------------- 258
Query: 154 RNPGVF-PY---SAGH------------------FVKSSHKDGLIELIFSYPLRSCH 188
PG Y + GH F S K I ++F +R C+
Sbjct: 259 -TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK--AITVLFFIGVR-CY 311
>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta
barrel, copper, copper transport, ION transport,
transport, transport protein; 3.40A {Escherichia coli
k-12} PDB: 3h94_A 3h9t_B
Length = 407
Score = 28.4 bits (62), Expect = 1.3
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 1 MKYKIAIIILLVLVGVILA---FYFQQSSTP 28
MK KIA+II ++ G I++ F + + P
Sbjct: 1 MK-KIALIIGSMIAGGIISAAGFTWVAKAEP 30
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.9
Identities = 7/16 (43%), Positives = 12/16 (75%), Gaps = 4/16 (25%)
Query: 136 SSVHQLY--DSSP-IA 148
+S+ +LY DS+P +A
Sbjct: 27 ASL-KLYADDSAPALA 41
>1n7v_A Adsorption protein P2; bacteriophage PRD1, viral receptor-binding,
beta-propeller, proline-rich, antibiotic-resistance,
viral protein; 2.20A {Enterobacteria phage PRD1} SCOP:
b.126.1.1 PDB: 1n7u_A
Length = 555
Score = 27.7 bits (61), Expect = 2.3
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 26/100 (26%)
Query: 128 SHIIDINDSSV-HQLYDSSPIA--------KDFVLRNPGVFPYSAGHFVKSSHKDGLIEL 178
S ++ + D+SV LY S P++ ++V N G+FP S G K L+E+
Sbjct: 377 SALVQLQDNSVLDVLYYSLPLSLGGSKAAIDEWVANNCGLFPMSGG-----LDKTTLLEI 431
Query: 179 IFSYPLRSCH--------GCEDIGFMDIAYKFTTKGAFIG 210
P R G D+ +D + + + +FIG
Sbjct: 432 ----PRRQLEAINPQDGPGQYDLFILDDSGAYASFSSFIG 467
>1ihp_A Phytase; phosphomonoesterase, hydrolase, glycoprotein, signal;
2.50A {Aspergillus ficuum} SCOP: c.60.1.2
Length = 438
Score = 26.6 bits (58), Expect = 4.9
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 10/51 (19%)
Query: 134 NDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSYPL 184
+D+S + DSSP FP ++ + SH +G+I ++F+ L
Sbjct: 305 DDTSSNHTLDSSP----------ATFPLNSTLYADFSHDNGIISILFALGL 345
>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain
1, antiport, calcium transport, calmodulin-binding, cell
membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A*
2fws_A
Length = 160
Score = 26.3 bits (57), Expect = 5.8
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 112 YRANENSGTLLIPTVGSHIIDINDSSVH-QLYDSSPIAKDFVLRNPGVFPYSAGHFVKS 169
Y+ EN GT+ + + N V + D + A G + G K
Sbjct: 32 YQCLENCGTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYEFTEGTVVFKPGETQKE 90
>1v04_A Serum paraoxonase/arylesterase 1; hydrolase, directed evolution,
antioxidant, israel structural proteomics center, ISPC,
structural genomics; 2.2A {Homo sapiens} SCOP: b.68.6.2
Length = 355
Score = 26.2 bits (57), Expect = 6.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 6 AIIILLVLVGVILAFYFQQSSTPQNHLLFFSE 37
A + L L+G+ LA + +Q S+ Q E
Sbjct: 2 AKLTALTLLGMGLALFDRQKSSFQTRFNVHRE 33
>1gxy_A T-cell ECTO-ADP-ribosyltransferase 2; immuno-regulation; 1.71A
{Rattus norvegicus} SCOP: d.166.1.3 PDB: 1gxz_A* 1gy0_A
1og1_A* 1og4_A* 1og3_A*
Length = 226
Score = 26.2 bits (57), Expect = 7.2
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 12/57 (21%)
Query: 110 YPYRANENSGTLLIPTVGSHIIDINDSSVHQLYDSSPIAKDFVLRNPGVFPYSAGHF 166
YP N+ GT L+ GS +D N + ++F NPG F Y A H+
Sbjct: 63 YPKGFNDFHGTALVAYTGSIAVDFNRA-----------VREFK-ENPGQFHYKAFHY 107
>2w2g_A Non-structural protein 3; thiol protease, RNA replication, viral
replicase, RNA-binding, zinc-finger, metal-binding,
transmembrane; 2.22A {Sars coronavirus} PDB: 2wct_A
2jwi_A 2jwj_A 2jzf_A 2rnk_A 2jzd_A 2jze_A
Length = 264
Score = 25.8 bits (56), Expect = 8.4
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 64 CIITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIG 104
C++ KK GGT E L ++ L+K Y+++Y + G
Sbjct: 68 CVVIPSKKAGGTTEML--SRALKKVPVDEYITTYPGQGCAG 106
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.324 0.140 0.423
Gapped
Lambda K H
0.267 0.0424 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,038,739
Number of extensions: 92168
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 11
Length of query: 229
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 140
Effective length of database: 3,535,514
Effective search space: 494971960
Effective search space used: 494971960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.7 bits)