Query gi|254780966|ref|YP_003065379.1| hypothetical protein CLIBASIA_04335 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 53
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 23:19:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780966.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f5g_A Transposase, putative; 11.6 43 0.0018 15.6 0.1 15 7-21 73-87 (133)
2 2kr6_A Presenilin-1; protease, 7.1 1.5E+02 0.0062 12.8 4.4 49 2-52 97-146 (176)
3 3b4s_A Protein LUXT; APC91483. 6.3 1.1E+02 0.0047 13.4 0.5 12 27-38 7-18 (94)
4 2fyx_A Transposase, putative; 5.6 1.1E+02 0.0048 13.4 0.1 14 8-21 84-97 (143)
5 2cw1_A SN4M; lambda CRO fold, 5.4 1.7E+02 0.0071 12.5 0.9 12 34-45 4-15 (65)
6 3bz1_K PSII-K, photosystem II 5.4 1.2E+02 0.0051 13.3 0.2 12 25-36 6-17 (37)
7 1zs4_A Regulatory protein CII; 4.7 1.7E+02 0.007 12.6 0.5 21 18-38 42-62 (83)
8 1dfm_A Endonuclease bglii; res 4.2 2.2E+02 0.0094 11.9 0.9 15 1-15 102-116 (223)
9 1tqg_A Chemotaxis protein CHEA 4.0 1.5E+02 0.0063 12.8 -0.1 11 9-19 43-53 (105)
10 1v5o_A 1700011N24RIK protein; 3.9 2.4E+02 0.01 11.7 1.3 18 36-53 36-53 (102)
No 1
>2f5g_A Transposase, putative; dimer, stem-loop binding, gene regulation; 1.70A {Sulfolobus solfataricus} SCOP: d.58.57.1 PDB: 2f4f_A 2ec2_A
Probab=11.61 E-value=43 Score=15.60 Aligned_cols=15 Identities=47% Similarity=0.616 Sum_probs=12.2
Q ss_pred HHHHHHHHHCCCCHH
Q ss_conf 532256550642046
Q gi|254780966|r 7 KSRTMHYLKGKSSRK 21 (53)
Q Consensus 7 ksrtmhylkgkssrk 21 (53)
-|..|.+|||.|||.
T Consensus 73 vs~~v~~lKg~Ssr~ 87 (133)
T 2f5g_A 73 PSYLANYFKGKSARL 87 (133)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999853465799
No 2
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=7.12 E-value=1.5e+02 Score=12.84 Aligned_cols=49 Identities=29% Similarity=0.476 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCCHHHHHCCHHCCCCCCC
Q ss_conf 456765322565506-420468899998889975269998500305865100
Q gi|254780966|r 2 FYDLFKSRTMHYLKG-KSSRKECFLAIFNPLIECLDFKEIVEDKENFPSLTI 52 (53)
Q Consensus 2 fydlfksrtmhylkg-kssrkecflaifnpliecldfkeivedkenfpslti 52 (53)
||.+.-+|.-.|-.| -..---||+||..-|.--|-.--|. +.-.|.|.|
T Consensus 97 FYSvLvg~a~~~~~~~~~t~~~c~vail~GL~~TL~lL~~~--~~alPALPi 146 (176)
T 2kr6_A 97 FYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIF--KKALPALPI 146 (176)
T ss_dssp HHHHHHHHHHHHSCCTTTTHHHHHHHHHHHHHHHHHHHHHH--TCSCSSSSS
T ss_pred EEEEEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCH
T ss_conf 75423466774057769999999999999999999999987--034876637
No 3
>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633}
Probab=6.29 E-value=1.1e+02 Score=13.45 Aligned_cols=12 Identities=50% Similarity=0.905 Sum_probs=6.0
Q ss_pred HHHHHHHHCCHH
Q ss_conf 988899752699
Q gi|254780966|r 27 IFNPLIECLDFK 38 (53)
Q Consensus 27 ifnpliecldfk 38 (53)
|++-+||+|||-
T Consensus 7 i~~lfie~LDFs 18 (94)
T 3b4s_A 7 IFKMFIEHLEFE 18 (94)
T ss_dssp HHHHHHTTSCCS
T ss_pred HHHHHHHHHCCC
T ss_conf 999999990357
No 4
>2fyx_A Transposase, putative; 6457846, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 1.90A {Deinococcus radiodurans R1} SCOP: d.58.57.1 PDB: 2xqc_A 2xm3_A 2xma_A 2xo6_A
Probab=5.58 E-value=1.1e+02 Score=13.42 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=11.0
Q ss_pred HHHHHHHHCCCCHH
Q ss_conf 32256550642046
Q gi|254780966|r 8 SRTMHYLKGKSSRK 21 (53)
Q Consensus 8 srtmhylkgkssrk 21 (53)
|..|..+||.|||.
T Consensus 84 S~~v~~lKg~SSr~ 97 (143)
T 2fyx_A 84 PDFVKALKGASARR 97 (143)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999871031588
No 5
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=5.39 E-value=1.7e+02 Score=12.51 Aligned_cols=12 Identities=58% Similarity=0.808 Sum_probs=7.8
Q ss_pred HCCHHHHHCCHH
Q ss_conf 526999850030
Q gi|254780966|r 34 CLDFKEIVEDKE 45 (53)
Q Consensus 34 cldfkeivedke 45 (53)
-||.|..||||.
T Consensus 4 kldlkkfvedkn 15 (65)
T 2cw1_A 4 KLDLKKFVEDKN 15 (65)
T ss_dssp BCCHHHHHTTSC
T ss_pred HHHHHHHHHHHH
T ss_conf 002888876002
No 6
>3bz1_K PSII-K, photosystem II reaction center protein K; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz2_K* 3kzi_K* 3a0b_K* 3a0h_K*
Probab=5.37 E-value=1.2e+02 Score=13.28 Aligned_cols=12 Identities=50% Similarity=1.007 Sum_probs=8.3
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999888997526
Q gi|254780966|r 25 LAIFNPLIECLD 36 (53)
Q Consensus 25 laifnpliecld 36 (53)
.++|+|++..+-
T Consensus 6 ya~f~PivdvlP 17 (37)
T 3bz1_K 6 YAIFDPLVDVLP 17 (37)
T ss_dssp GGGGHHHHTTGG
T ss_pred HHHHHHHHHHHC
T ss_conf 654310888721
No 7
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription/DNA complex; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=4.73 E-value=1.7e+02 Score=12.56 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHCCHH
Q ss_conf 204688999988899752699
Q gi|254780966|r 18 SSRKECFLAIFNPLIECLDFK 38 (53)
Q Consensus 18 ssrkecflaifnpliecldfk 38 (53)
|-.|++|+.-|--++.+|+|+
T Consensus 42 SRwK~~~~~k~a~lLA~Le~~ 62 (83)
T 1zs4_A 42 SRWKRDWIPKFSMLLAVLEWG 62 (83)
T ss_dssp HHHHHHTHHHHHHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHHHHHCCC
T ss_conf 730134799999999997379
No 8
>1dfm_A Endonuclease bglii; restriction endonuclease, restriction enzyme, protein-DNA complex, hydrolase/DNA complex; HET: DNA; 1.50A {Bacillus subtilis} SCOP: c.52.1.5 PDB: 1d2i_A* 1es8_A
Probab=4.21 E-value=2.2e+02 Score=11.88 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 945676532256550
Q gi|254780966|r 1 MFYDLFKSRTMHYLK 15 (53)
Q Consensus 1 mfydlfksrtmhylk 15 (53)
|+||+.|+...||-+
T Consensus 102 m~~nllK~~lff~s~ 116 (223)
T 1dfm_A 102 LLNNTVRSELFHKSN 116 (223)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999998733
No 9
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=4.03 E-value=1.5e+02 Score=12.79 Aligned_cols=11 Identities=45% Similarity=0.791 Sum_probs=0.0
Q ss_pred HHHHHHHCCCC
Q ss_conf 22565506420
Q gi|254780966|r 9 RTMHYLKGKSS 19 (53)
Q Consensus 9 rtmhylkgkss 19 (53)
|.+|-+||-++
T Consensus 43 R~~HtLKGsa~ 53 (105)
T 1tqg_A 43 RALHTLKGMAG 53 (105)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99997735886
No 10
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=3.90 E-value=2.4e+02 Score=11.70 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=0.0
Q ss_pred CHHHHHCCHHCCCCCCCC
Q ss_conf 699985003058651009
Q gi|254780966|r 36 DFKEIVEDKENFPSLTIR 53 (53)
Q Consensus 36 dfkeivedkenfpsltir 53 (53)
|+|+.+|++++.|.-..|
T Consensus 36 ~lK~~I~~~~gip~~~qr 53 (102)
T 1v5o_A 36 NFRVLCELESGVPAEEAQ 53 (102)
T ss_dssp HHHHHHHHHTCCCGGGBC
T ss_pred HHHHHHHHHHCCCHHHEE
T ss_conf 999999777684902189
Done!