RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780966|ref|YP_003065379.1| hypothetical protein
CLIBASIA_04335 [Candidatus Liberibacter asiaticus str. psy62]
         (53 letters)



>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain,
          NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase,
          structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
          d.15.1.1
          Length = 89

 Score = 25.6 bits (56), Expect = 2.5
 Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 1/42 (2%)

Query: 8  SRTMH-YLKGKSSRKECFLAIFNPLIECLDFKEIVEDKENFP 48
          S  M   ++     K C +   +      + +E V    +  
Sbjct: 5  SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR 46


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.328    0.143    0.431 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 456,078
Number of extensions: 13944
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 53
Length of database: 5,693,230
Length adjustment: 25
Effective length of query: 28
Effective length of database: 5,087,130
Effective search space: 142439640
Effective search space used: 142439640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.5 bits)