BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780966|ref|YP_003065379.1| hypothetical protein
CLIBASIA_04335 [Candidatus Liberibacter asiaticus str. psy62]
         (53 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780966|ref|YP_003065379.1| hypothetical protein CLIBASIA_04335 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 53

 Score =  110 bits (275), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 1  MFYDLFKSRTMHYLKGKSSRKECFLAIFNPLIECLDFKEIVEDKENFPSLTIR 53
          MFYDLFKSRTMHYLKGKSSRKECFLAIFNPLIECLDFKEIVEDKENFPSLTIR
Sbjct: 1  MFYDLFKSRTMHYLKGKSSRKECFLAIFNPLIECLDFKEIVEDKENFPSLTIR 53


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1386

 Score = 21.2 bits (43), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 20  RKECFLAIFNPLIECLDFKEIVEDKENFPSLTIR 53
           RKE  +AI   L++  + K  ++D +N  +  +R
Sbjct: 432 RKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVR 465


>gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 493

 Score = 20.8 bits (42), Expect = 4.7,   Method: Composition-based stats.
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 40  IVEDKENFPSLTI 52
           +V+ K+NFPSL +
Sbjct: 265 VVQIKKNFPSLLV 277


>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 470

 Score = 20.8 bits (42), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/11 (81%), Positives = 9/11 (81%)

Query: 32  IECLDFKEIVE 42
           I  LDFKEIVE
Sbjct: 133 IYSLDFKEIVE 143


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.328    0.143    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,416
Number of Sequences: 1233
Number of extensions: 1002
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 53
length of database: 328,796
effective HSP length: 25
effective length of query: 28
effective length of database: 297,971
effective search space:  8343188
effective search space used:  8343188
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 31 (16.5 bits)