HHsearch alignment for GI: 254780967 and conserved domain: COG0738
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism].
Probab=100.00 E-value=7.6e-32 Score=192.08 Aligned_cols=346 Identities=13% Similarity=0.143 Sum_probs=259.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998865766999999999981999889999999999999999999999998650828999999999999999851
Q gi|254780967|r 7 IAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMV 86 (398)
Q Consensus 7 l~~~~~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~ 86 (398)
T Consensus 18 ~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~-liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~ 96 (422)
T COG0738 18 LTSLFFLWGFITCLNDILIPHLKEVFDLTYFEAS-LIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW 96 (422)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999962211407999999386599999-999999998999861499999884248899999999999999986
Q ss_pred ---CCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC----------
Q ss_conf ---0011011100223210011111110001233210001111221223310001111111111222211----------
Q gi|254780967|r 87 ---TINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVAL---------- 153 (398)
Q Consensus 87 ---~a~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~---------- 153 (398)
T Consensus 97 pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~ 176 (422)
T COG0738 97 PAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQ 176 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 66651129999999999984068888514416987277156889989999864169899999999999732251048889
Q ss_pred --------CCCCCHHHHHHHHHHHHHHHHH-HHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCH
Q ss_conf --------1111014567888887777888-7616788640221011111123331000000000256777887631001
Q gi|254780967|r 154 --------SGGWIGIFVCMGVITTFITLWY-YIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAIL 224 (398)
Q Consensus 154 --------~~gWr~~f~~~~~~~~~~~~~~-~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (398)
T Consensus 177 ~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~---~~~~~l~~~~~~~~gvl~~FlYVG~Ev 253 (422)
T COG0738 177 ILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGS---AGLSSLFQNKHLRLGVLAIFLYVGAEV 253 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 99999998875650899999999999999984359767856511256564---138899757489999999999984999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 4688876545543153110-158899886576778899999850015651246887788899999999873257776403
Q gi|254780967|r 225 GFVNSSQQIYVGIYQLGNL-FPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLL 303 (398)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (398)
T Consensus 254 a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~---~~~l~~g-----~ 325 (422)
T COG0738 254 AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLL---AVALIGG-----V 325 (422)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---HHHHHCC-----H
T ss_conf 9999999999865996389999999999999999999999999971888999999999999999---9999647-----4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79989989999999999999999985346676999999999999999999999999983117
Q gi|254780967|r 304 IFIAFFFLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNGTT 365 (398)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~~~~ 365 (398)
T Consensus 326 v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~s~~l-~maivGGAiiP~l~G~i~d~~g 386 (422)
T COG0738 326 VALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSGLL-VMAIVGGAIIPPLQGVIADMFG 386 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE-EEHEECCHHHHHHHHHHHHHHH
T ss_conf 999999999998677788999999831476556541133-3110230388899999997540