HHsearch alignment for GI: 254780967 and conserved domain: COG2223
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism].
Probab=100.00 E-value=3.1e-35 Score=210.72 Aligned_cols=375 Identities=17% Similarity=0.220 Sum_probs=261.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999988657-6699999999998199988999999999999999999999999865082899999999999999985
Q gi|254780967|r 7 IAMLMAINSLGI-DIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM 85 (398)
Q Consensus 7 l~~~~~~~~~~~-~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~ 85 (398)
T Consensus 18 ~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~-ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~ 96 (417)
T COG2223 18 LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKG-LLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGL 96 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999988654121488988899-99999998747899877753401284379999999999999999
Q ss_pred HCCCCHH---HHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC---CCH
Q ss_conf 1001101---1100223210011111110001233210001111221223310001111111111222211111---101
Q gi|254780967|r 86 VTINSFT---GMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGG---WIG 159 (398)
Q Consensus 86 ~~a~~~~---~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~g---Wr~ 159 (398)
T Consensus 97 ~~a~~~~~~~~ll~~gll~G~~GasFa-v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~-v~~~~g~~~w~~ 173 (417)
T COG2223 97 AFAVTYPSTWQLLVIGLLLGLAGASFA-VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL-VAVAFGFLAWRN 173 (417)
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCEEH-CCCCCCCCCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 997128756899999999701663000-02544211188544418988760-553019999998899-999972589999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf 45678888877778887616788640221011111123-33100000000025677788763100146888765455431
Q gi|254780967|r 160 IFVCMGVITTFITLWYYIRFPETLDPRDVRPLNLYAIL-HSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIY 238 (398)
Q Consensus 160 ~f~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (398)
T Consensus 174 ~~~i~~~~l~v~~v~~~~~~~d~p~~r~----~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~f 249 (417)
T COG2223 174 VAGIYVVALAIAAVLAWLGMNDVPEHRA----SVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQF 249 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHC----CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999998476866523----555320057788863820699999999999999999999999999864
Q ss_pred CCCCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 531101-5889988657677889999985001565124688778889999999987325777640379989989999999
Q gi|254780967|r 239 QLGNLF-PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFG 317 (398)
Q Consensus 239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (398)
T Consensus 250 g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G 329 (417)
T COG2223 250 GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAG 329 (417)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 98723188999987889999985044443313534479999999999999997056344667643999999999999915
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCH
Q ss_conf 999999999985346676999999999999999999999999983117999999999---9999999999994220
Q gi|254780967|r 318 LINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPITIGFFG---IAVSSFICILIVEKNQ 390 (398)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 390 (398)
T Consensus 330 ~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~-~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 330 LGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS-YTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred CCCCHHEEECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6763003313187786646788799885425665404899999984263-79999999999999999999999711