HHsearch alignment for GI: 254780967 and conserved domain: COG2223

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism].
Probab=100.00  E-value=3.1e-35  Score=210.72  Aligned_cols=375  Identities=17%  Similarity=0.220  Sum_probs=261.8

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999999988657-6699999999998199988999999999999999999999999865082899999999999999985
Q gi|254780967|r    7 IAMLMAINSLGI-DIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM   85 (398)
Q Consensus         7 l~~~~~~~~~~~-~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~   85 (398)
T Consensus        18 ~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~-ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~   96 (417)
T COG2223          18 LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKG-LLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGL   96 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999988654121488988899-99999998747899877753401284379999999999999999


Q ss_pred             HCCCCHH---HHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC---CCH
Q ss_conf             1001101---1100223210011111110001233210001111221223310001111111111222211111---101
Q gi|254780967|r   86 VTINSFT---GMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGG---WIG  159 (398)
Q Consensus        86 ~~a~~~~---~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~g---Wr~  159 (398)
T Consensus        97 ~~a~~~~~~~~ll~~gll~G~~GasFa-v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~-v~~~~g~~~w~~  173 (417)
T COG2223          97 AFAVTYPSTWQLLVIGLLLGLAGASFA-VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL-VAVAFGFLAWRN  173 (417)
T ss_pred             HHHCCCCCHHHHHHHHHHHHCCCCEEH-CCCCCCCCCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf             997128756899999999701663000-02544211188544418988760-553019999998899-999972589999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf             45678888877778887616788640221011111123-33100000000025677788763100146888765455431
Q gi|254780967|r  160 IFVCMGVITTFITLWYYIRFPETLDPRDVRPLNLYAIL-HSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIY  238 (398)
Q Consensus       160 ~f~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (398)
T Consensus       174 ~~~i~~~~l~v~~v~~~~~~~d~p~~r~----~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~f  249 (417)
T COG2223         174 VAGIYVVALAIAAVLAWLGMNDVPEHRA----SVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQF  249 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHC----CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999998476866523----555320057788863820699999999999999999999999999864


Q ss_pred             CCCCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             531101-5889988657677889999985001565124688778889999999987325777640379989989999999
Q gi|254780967|r  239 QLGNLF-PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFG  317 (398)
Q Consensus       239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (398)
T Consensus       250 g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G  329 (417)
T COG2223         250 GLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAG  329 (417)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             98723188999987889999985044443313534479999999999999997056344667643999999999999915


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCH
Q ss_conf             999999999985346676999999999999999999999999983117999999999---9999999999994220
Q gi|254780967|r  318 LINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPITIGFFG---IAVSSFICILIVEKNQ  390 (398)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  390 (398)
T Consensus       330 ~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~-~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         330 LGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGS-YTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             CCCCHHEEECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             6763003313187786646788799885425665404899999984263-79999999999999999999999711