HHsearch alignment for GI: 254780967 and conserved domain: COG2223
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism].
Probab=99.26 E-value=5.4e-11 Score=77.10 Aligned_cols=160 Identities=19% Similarity=0.252 Sum_probs=112.0
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9998-865766999999999981999889999999999999999999999998650828999999999999999851001
Q gi|254780967|r 11 MAIN-SLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTIN 89 (398)
Q Consensus 11 ~~~~-~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~ 89 (398)
T Consensus 229 ~tFG~Fvgfs~~l~~~--~~~~fg~~~~~Ag~~a-~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~ 305 (417)
T COG2223 229 ATFGGFVGFSAYLPMY--LVTQFGLSPVTAGLIA-FLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFL 305 (417)
T ss_pred HHHHHHHHHHHHHHHH--HHHHCCCCHHHHHHHH-HHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999--9986498723188999-987889999985044443313534479999999999999997056
Q ss_pred -------CHHH----HCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------1011----10022321001111111000123321000111122122331000111111111122221111110
Q gi|254780967|r 90 -------SFTG----MLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWI 158 (398)
Q Consensus 90 -------~~~~----l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr 158 (398)
T Consensus 306 ~~~~~~~~~~~~~~~~l~l~~~~G~GnGs----vfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~ 380 (417)
T COG2223 306 TGFGHGGSFVVFVAVFLALFVFAGLGNGS----VFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYT 380 (417)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCH----HEEECHHHHH-HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHH
T ss_conf 34466764399999999999991567630----0331318778-664678879988542566540489999998426379
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 14567888887777888761
Q gi|254780967|r 159 GIFVCMGVITTFITLWYYIR 178 (398)
Q Consensus 159 ~~f~~~~~~~~~~~~~~~~~ 178 (398)
T Consensus 381 ~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 381 GAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999