HHsearch alignment for GI: 254780967 and conserved domain: COG2814
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism].
Probab=100.00 E-value=1.4e-45 Score=267.77 Aligned_cols=339 Identities=18% Similarity=0.258 Sum_probs=259.8
Q ss_pred HHHHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 657669--999999999819998899999999999999999999999986508289999999999999998510011011
Q gi|254780967|r 16 LGIDII--LPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTG 93 (398)
Q Consensus 16 ~~~~~~--~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~~~~~ 93 (398)
T Consensus 25 igttEfv~~gLLp~iA~dl~vs~~~aG~-lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~ 103 (394)
T COG2814 25 IGTTEFVPVGLLPPIAADLGVSEGAAGQ-LITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAV 103 (394)
T ss_pred HHHHHHHHHHCHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 8847886882228899883998889999-999999999998899999871335389999999999999899999531999
Q ss_pred HCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 10022321001111111000123321000111122122331000111111111122221111110145678888877778
Q gi|254780967|r 94 MLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITL 173 (398)
Q Consensus 94 l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~~~~~~ 173 (398)
T Consensus 104 Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt-~ig~~~GWR~~F~~ia~l~ll~~~ 182 (394)
T COG2814 104 LLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT-FLGQLFGWRATFLAIAVLALLALL 182 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998889999999999998759521245999999779999998512899-999886389999999999999999
Q ss_pred HHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q ss_conf 887616788640221011111123331000000000256777887631001468887654554315311-0158899886
Q gi|254780967|r 174 WYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGN-LFPIAFAVGG 252 (398)
Q Consensus 174 ~~~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 252 (398)
T Consensus 183 ~~~~~lP---~~--~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~G 257 (394)
T COG2814 183 LLWKLLP---PS--EISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFG 257 (394)
T ss_pred HHHHHCC---CC--CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 9999699---96--677877764467998966845899999999998162444895799998735998768899999998
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57677889999985001565124688778889999999987325777640379989989999999999999999985346
Q gi|254780967|r 253 FAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFS 332 (398)
Q Consensus 253 ~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (398)
T Consensus 258 v~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~---~~l~l~~~~~~---~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p 330 (394)
T COG2814 258 IAGFIGNLLGGRLADR-GPRRALIAALLLLAL---ALLALTFTGAS---PALALALLFLWGFAFSPALQGLQTRLARLAP 330 (394)
T ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHH---HHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999987777640202-106699999999999---99999983111---9999999999999863015678887502477
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 676999999999999999999999999983117999
Q gi|254780967|r 333 HLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPI 368 (398)
Q Consensus 333 ~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 368 (398)
T Consensus 331 ~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~ 366 (394)
T COG2814 331 DAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAA 366 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 743799999999999999999999899998103577