HHsearch alignment for GI: 254780967 and conserved domain: COG2814

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism].
Probab=100.00  E-value=1.4e-45  Score=267.77  Aligned_cols=339  Identities=18%  Similarity=0.258  Sum_probs=259.8

Q ss_pred             HHHHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             657669--999999999819998899999999999999999999999986508289999999999999998510011011
Q gi|254780967|r   16 LGIDII--LPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTG   93 (398)
Q Consensus        16 ~~~~~~--~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~~~~~   93 (398)
T Consensus        25 igttEfv~~gLLp~iA~dl~vs~~~aG~-lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~  103 (394)
T COG2814          25 IGTTEFVPVGLLPPIAADLGVSEGAAGQ-LITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAV  103 (394)
T ss_pred             HHHHHHHHHHCHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             8847886882228899883998889999-999999999998899999871335389999999999999899999531999


Q ss_pred             HCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             10022321001111111000123321000111122122331000111111111122221111110145678888877778
Q gi|254780967|r   94 MLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITL  173 (398)
Q Consensus        94 l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~~~~~~  173 (398)
T Consensus       104 Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt-~ig~~~GWR~~F~~ia~l~ll~~~  182 (394)
T COG2814         104 LLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT-FLGQLFGWRATFLAIAVLALLALL  182 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999998889999999999998759521245999999779999998512899-999886389999999999999999


Q ss_pred             HHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q ss_conf             887616788640221011111123331000000000256777887631001468887654554315311-0158899886
Q gi|254780967|r  174 WYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGN-LFPIAFAVGG  252 (398)
Q Consensus       174 ~~~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  252 (398)
T Consensus       183 ~~~~~lP---~~--~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~G  257 (394)
T COG2814         183 LLWKLLP---PS--EISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFG  257 (394)
T ss_pred             HHHHHCC---CC--CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             9999699---96--677877764467998966845899999999998162444895799998735998768899999998


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57677889999985001565124688778889999999987325777640379989989999999999999999985346
Q gi|254780967|r  253 FAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFS  332 (398)
Q Consensus       253 ~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (398)
T Consensus       258 v~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~---~~l~l~~~~~~---~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p  330 (394)
T COG2814         258 IAGFIGNLLGGRLADR-GPRRALIAALLLLAL---ALLALTFTGAS---PALALALLFLWGFAFSPALQGLQTRLARLAP  330 (394)
T ss_pred             HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHH---HHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999987777640202-106699999999999---99999983111---9999999999999863015678887502477


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             676999999999999999999999999983117999
Q gi|254780967|r  333 HLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPI  368 (398)
Q Consensus       333 ~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~  368 (398)
T Consensus       331 ~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~  366 (394)
T COG2814         331 DAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAA  366 (394)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf             743799999999999999999999899998103577