HHsearch alignment for GI: 254780967 and conserved domain: COG2814
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism].
Probab=99.25 E-value=2.6e-11 Score=78.89 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=48.5
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHCCCCCCCCCCC
Q ss_conf 999981999889999999999999999999999998650828999999999999999851-0011011100223210011
Q gi|254780967|r 27 KISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMV-TINSFTGMLCMRLIQGIGG 105 (398)
Q Consensus 27 ~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~-~a~~~~~l~~~r~l~G~g~ 105 (398)
T Consensus 237 ~L~~v~g~s~~~vs-~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~ 314 (394)
T COG2814 237 FLESVAGFSVSAVS-LVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAF 314 (394)
T ss_pred HHHHCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99873599876889-99999989999987777640202-10669999999999999999983111999999999999986
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11111000123321000111122122331000111111111122221111110145678888877778
Q gi|254780967|r 106 AAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITL 173 (398)
Q Consensus 106 ~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~~~~~~ 173 (398)
T Consensus 315 ~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-~g~~~~~~~~a~l~~~a~~ 380 (394)
T COG2814 315 SPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA-LGYAATGWVGAALLLLALL 380 (394)
T ss_pred HHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHH
T ss_conf 3015678887502-4777437999999999999999999998999981-0357789999999999999