HHsearch alignment for GI: 254780967 and conserved domain: COG3104
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism].
Probab=99.83 E-value=2.1e-16 Score=106.90 Aligned_cols=317 Identities=17% Similarity=0.161 Sum_probs=180.4
Q ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHCCC--CHHHH
Q ss_conf 99999999819----998899999999999-99999999999998650-828999999999999999851001--10111
Q gi|254780967|r 23 PCLPKISDSLH----LSNENYGQHLISFYL-IGYGIAQIFYGPLSDRF-GRKIVMMFGLVIHIISTFIMVTIN--SFTGM 94 (398)
Q Consensus 23 p~lp~i~~~l~----~s~~~~~~~~~s~~~-~~~~i~~~~~G~l~Dr~-Grr~~l~~g~~~~~i~~~~~~~a~--~~~~l 94 (398)
T Consensus 43 iL~~Yl~~~~~~gLg~~~~~A~~l-~~~y~slVY-~t~i~GG~laDrvLG~~~tI~lGail~~iGh~~L~~~~~~~~~gl 120 (498)
T COG3104 43 ILILYLYYQLGDGLGFDETHATGL-FSAYGSLVY-LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGL 120 (498)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 999999985166678585766889-999999999-988777888887522357799989999998999946544661089
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCC--CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 002232100111111100012332100011--112212233100011111111112222111111014567888887777
Q gi|254780967|r 95 LCMRLIQGIGGAAPRIITISIIRDIYDGRD--MAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFIT 172 (398)
Q Consensus 95 ~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~--~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~~~~~ 172 (398)
T Consensus 121 ~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~-~~~~~~g~~~gF~~aavGm~~-g 198 (498)
T COG3104 121 YIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITG-LLAINYGWHVGFGLAAVGMII-G 198 (498)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHH-HHHHHHCHHHHHHHHHHHHHH-H
T ss_conf 99999998366655666789889855999866577751799985048778999999-999860689999999999999-9
Q ss_pred HHHHHHCC----CCCCHHHHCCCCCCCCCCCC-------------------------------------CCCC------C
Q ss_conf 88876167----88640221011111123331-------------------------------------0000------0
Q gi|254780967|r 173 LWYYIRFP----ETLDPRDVRPLNLYAILHSF-------------------------------------SLIF------K 205 (398)
Q Consensus 173 ~~~~~~~p----et~~~~~~~~~~~~~~~~~~-------------------------------------~~~~------~ 205 (398)
T Consensus 199 l~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (498)
T COG3104 199 LVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFD 278 (498)
T ss_pred HHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99999813000477887786530044434268899999999999999889999889999999999999999860673178
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHH---HHHH----HH--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----
Q ss_conf 00002567778876310014688876---5455----43--15311015889988657677889999985001565----
Q gi|254780967|r 206 HRASTLYNIANSLTMGAILGFVNSSQ---QIYV----GI--YQLGNLFPIAFAVGGFAMSIASFINSRLVEKFGIR---- 272 (398)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~---- 272 (398)
T Consensus 279 er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~p 358 (498)
T COG3104 279 ERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQP 358 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEECCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999999987434068888977630323532158899875379999999899999984862378788
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHH---CC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf -1246887788899999999873---25--777640379989989999999999999999985346-67699999999
Q gi|254780967|r 273 -RVSHYSLLIFFMITGSWLLVQI---TS--NHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFS-HLAGTASSIFG 343 (398)
Q Consensus 273 -~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~a~~l~~ 343 (398)
T Consensus 359 s~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lvl~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wf 436 (498)
T COG3104 359 STPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWF 436 (498)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 850589999999999999998999860688888688999999999999999728788999998684989999999999