HHsearch alignment for GI: 254780967 and conserved domain: PRK09528
>PRK09528 lacY galactoside permease; Reviewed.
Probab=99.94 E-value=8.5e-23 Score=142.20 Aligned_cols=376 Identities=13% Similarity=0.064 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHH
Q ss_conf 9999999988657669999999999-8199988999999999999999999999999865082899999--999999999
Q gi|254780967|r 6 VIAMLMAINSLGIDIILPCLPKISD-SLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMF--GLVIHIIST 82 (398)
Q Consensus 6 ~l~~~~~~~~~~~~~~~p~lp~i~~-~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~--g~~~~~i~~ 82 (398)
T Consensus 12 ~~s~~yf~yF~~~g~~~pf~~vwL~~~~Gls~~qIG-li~s~~~~~~l~~~p~~G~lsDk~g~~k~ll~~~~~~~~~~~~ 90 (418)
T PRK09528 12 LFSLFFFFFFFIWSSYFSFFPIWLHDINGLSKTDTG-IIFSAISLFALLFQPLYGVISDKLGLKKYLLWIISGLLVLFGP 90 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999996767898999999-9999999999999888999742024127899999999999999
Q ss_pred -HHHHCCC----CHHH-HCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf -9851001----1011-100223210011111110001233210001111221223310001111111111222211111
Q gi|254780967|r 83 -FIMVTIN----SFTG-MLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGG 156 (398)
Q Consensus 83 -~~~~~a~----~~~~-l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~g 156 (398)
T Consensus 91 ~f~~vf~pll~~~~~lg~~~~~i~~~~~~~a~~pl~ds~~~~~s~--~~~~~YG~iRlwGSiGfavas~~~G~l~~~~-- 166 (418)
T PRK09528 91 FFIYVFAPLLQYNILVGAIVGGIYLGFGFNAGAGAIEAYIEKVSR--NSGFEYGRARMFGSLGWALCAFFAGILFNIN-- 166 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_conf 999999999999999999999999999873466389999999987--7589762478999999999999988987617--
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH----H
Q ss_conf 10145678888877778887616788640221----011111123331000000000256777887631001468----8
Q gi|254780967|r 157 WIGIFVCMGVITTFITLWYYIRFPETLDPRDV----RPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFV----N 228 (398)
Q Consensus 157 Wr~~f~~~~~~~~~~~~~~~~~~pet~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 228 (398)
T Consensus 167 ~~~~f~~~s~~~li~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~f~l~~~~~~~~~~~~d~~f~~ 246 (418)
T PRK09528 167 PQINFWLGSGCALILAVLLFFAKPDAPSTATVANAVGANPSAVSLKDALALFKLPKFWFLVLYVIGVACIYDVFDQQFPN 246 (418)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32899999999999999999846765322100000014668877999999836749999999999999999999988889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 87654554315311015889988657677889999985001565124688778889999999987325777640379989
Q gi|254780967|r 229 SSQQIYVGIYQLGNLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAF 308 (398)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (398)
T Consensus 247 f~~~~~~~~~~g~~~~G~l~s~gv~~Ei~~m~~~~~l~~r~g~k~~Llla~~~~~lRw~~~---~----~~~~~~~i~~~ 319 (418)
T PRK09528 247 FFASFFATHEQGTRVFGYLNSFQVFLEALIMFFAPLIINRIGAKNALLLAGTIMAVRIIGS---A----FATNALEVSIL 319 (418)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---H----HCCCHHHHHHH
T ss_conf 9999977016671367699999999999999999999986080999999999999999986---3----00138999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHH
Q ss_conf 989999999999999999985346-676999999999-999999999999999983117999999-9999999-999999
Q gi|254780967|r 309 FFLASFQFGLINSNFSSISMEPFS-HLAGTASSIFGF-INTVISTILGIIIGQSFNGTTYPITIG-FFGIAVS-SFICIL 384 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~a~~l~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~-~~~~~~ 384 (398)
T Consensus 320 qlLHa~tf~l~~~a~~~yI~~~~~~~l~aT~~~v~~~~~~gl~~~i~s~~~G~lyD~~G~~~~y~~~g~i~~~~tlis~f 399 (418)
T PRK09528 320 KLLHAFEVPFLLVGIFKYITSNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQDTYLVLGLIVLGFTLISAF 399 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999858888899999999999999999997420688999844579999999999999999999
Q ss_pred HHHCCHHHH
Q ss_conf 994220003
Q gi|254780967|r 385 IVEKNQMFR 393 (398)
Q Consensus 385 ~~~~~~~~r 393 (398)
T Consensus 400 ~l~~~~~~~ 408 (418)
T PRK09528 400 TLSGKRPLS 408 (418)
T ss_pred HHCCCCCCC
T ss_conf 735788675