HHsearch alignment for GI: 254780967 and conserved domain: PRK09584
>PRK09584 tppB putative tripeptide transporter permease; Reviewed.
Probab=99.91 E-value=5.6e-20 Score=126.64 Aligned_cols=350 Identities=14% Similarity=0.082 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999886576699999-9999981999889999999999999999999999998650-8289999999999999998
Q gi|254780967|r 7 IAMLMAINSLGIDIILPCL-PKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRF-GRKIVMMFGLVIHIISTFI 84 (398)
Q Consensus 7 l~~~~~~~~~~~~~~~p~l-p~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~-Grr~~l~~g~~~~~i~~~~ 84 (398)
T Consensus 26 lf~tE~wERFsyYGmralL~lyl~~~Lg~s~~~A~~-i~g~f~alvYl~pi~GG~lADr~LG~r~ti~~G~il~~~G~~~ 104 (500)
T PRK09584 26 IFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSIT-LFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL 104 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999884998889999-9999999999999869999896104099999999999998999
Q ss_pred HHCCCC-HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCC--CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 510011-011100223210011111110001233210001--11122122331000111111111122221111110145
Q gi|254780967|r 85 MVTINS-FTGMLCMRLIQGIGGAAPRIITISIIRDIYDGR--DMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIF 161 (398)
Q Consensus 85 ~~~a~~-~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~--~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f 161 (398)
T Consensus 105 La~~~~~~~~~~~gL~lI~vG~G~~KpnisslvG~lY~~~d~rrD~~FtiFYmgINiGafla~ll~g-~l~~~~G~~~gF 183 (500)
T PRK09584 105 VAWSGHDAGIVYMGMAAIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATP-WLAAKYGWSVAF 183 (500)
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHCHHHHH
T ss_conf 9723563789999999999555346765778887605899633224422899999899999999999-999873616789
Q ss_pred HHHHHHHHHHHHHHHH---HCCCCCCHHHHCCCCCCCCCC----------------------------------------
Q ss_conf 6788888777788876---167886402210111111233----------------------------------------
Q gi|254780967|r 162 VCMGVITTFITLWYYI---RFPETLDPRDVRPLNLYAILH---------------------------------------- 198 (398)
Q Consensus 162 ~~~~~~~~~~~~~~~~---~~pet~~~~~~~~~~~~~~~~---------------------------------------- 198 (398)
T Consensus 184 ~~a~igM~igli~f~~~~k~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (500)
T PRK09584 184 ALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRNLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKE 263 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999997887425788867453015689999999999999999997304899999999999999999999
Q ss_pred --CCCCCCCCCHHHHHHHHHHHHHHCCHH-HHH--HHHHHHHHH------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --310000000002567778876310014-688--876545543------153110158899886576778899999850
Q gi|254780967|r 199 --SFSLIFKHRASTLYNIANSLTMGAILG-FVN--SSQQIYVGI------YQLGNLFPIAFAVGGFAMSIASFINSRLVE 267 (398)
Q Consensus 199 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 267 (398)
T Consensus 264 ~~~~~~~er~r~-~~~-~il~~~~ivFw~~y~Q~~ssl~lfa~~~vd~~l~g~~ip~~~fqslNpl~IiilaPl~a~lw~ 341 (500)
T PRK09584 264 AFAMKGAARRKM-IVA-FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYN 341 (500)
T ss_pred HCCCCHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 704788998358-999-999999999999999834899999998334212773217899988727999998999999999
Q ss_pred CCCCCCHH--HHHHHHHHHHHH--HHHHHH--HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 01565124--688778889999--999987--325777640379989989999999999999999985346-67699999
Q gi|254780967|r 268 KFGIRRVS--HYSLLIFFMITG--SWLLVQ--ITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFS-HLAGTASS 340 (398)
Q Consensus 268 r~~~~~~~--~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~a~~ 340 (398)
T Consensus 342 ~lg~~~~~p~KfaiG~~l~gl~F~vl~~~~~~~~~~g~vs~~Wlv~~Y~l~tigEL~lSPvGLS~vtklAP~~~~s~mMG 421 (500)
T PRK09584 342 KMGDTLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMG 421 (500)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 81777883699999999999999999999986267884068999999999999999975899999998785999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254780967|r 341 IFGFINTVISTILGIIIGQS 360 (398)
Q Consensus 341 l~~~~~~~~~~~~~~~~g~~ 360 (398)
T Consensus 422 ~wfls~a~gn~lag~ia~~~ 441 (500)
T PRK09584 422 SWFLTTAGAALIAGYVAGLM 441 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999986