HHsearch alignment for GI: 254780967 and conserved domain: PRK09952
>PRK09952 shikimate transporter; Provisional.
Probab=100.00 E-value=1.8e-35 Score=212.00 Aligned_cols=377 Identities=15% Similarity=0.121 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHH-CCCHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999886576699999999-9981-999889999-999999999---9999999999986508289999999999999998
Q gi|254780967|r 11 MAINSLGIDIILPCLPKI-SDSL-HLSNENYGQ-HLISFYLIG---YGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFI 84 (398)
Q Consensus 11 ~~~~~~~~~~~~p~lp~i-~~~l-~~s~~~~~~-~~~s~~~~~---~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~ 84 (398)
T Consensus 31 ~~lE~yDf~iy~~~a~~i~~~~FFp~~~~~~~ll~~~~~fa~gfl~RPlGg~ifG~~gDr~GRk~~L~~si~~m~~~T~l 110 (438)
T PRK09952 31 AVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATAL 110 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999978724999990799999999999999987589999999997303399999999999999999
Q ss_pred HHCCCCHHH--------HCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC---C-
Q ss_conf 510011011--------1002232100111111100012332100011112212233100011111111112222---1-
Q gi|254780967|r 85 MVTINSFTG--------MLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATV---A- 152 (398)
Q Consensus 85 ~~~a~~~~~--------l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~---~- 152 (398)
T Consensus 111 ig~lPty~~IGi~ApilLv~~R~lQGl~~GGE~~~a~~~~~E~~p~~~Rg~~~s~~~~~~~~G~llas~~~~~l~~~l~~ 190 (438)
T PRK09952 111 IGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTD 190 (438)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99747689888899999999999978887612889999999968877732440499998899999999999999983688
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC-CCCCCCCCCCCC-CCHHHHHHHHHH-HHHHCCHHH
Q ss_conf ---11111014567888887777888761678864022101111-112333100000-000025677788-763100146
Q gi|254780967|r 153 ---LSGGWIGIFVCMGVITTFITLWYYIRFPETLDPRDVRPLNL-YAILHSFSLIFK-HRASTLYNIANS-LTMGAILGF 226 (398)
Q Consensus 153 ---~~~gWr~~f~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~ 226 (398)
T Consensus 191 ~~~~~wGWRipFlig~l~~-li~l~iR~~l~Esp~f~~~~~~~~~~~~~~p~~e~~~~~~~~~l~~~~l~~~~~~~~y~~ 269 (438)
T PRK09952 191 EQFLSWGWRIPFLFSIVLV-LIALWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIV 269 (438)
T ss_pred HHHHHCCHHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8885314299999999999-999999982788878999876233443346699999986599999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf 8887654554315311015889-988657677889999985001565124688778889999999987325777640379
Q gi|254780967|r 227 VNSSQQIYVGIYQLGNLFPIAF-AVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIF 305 (398)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (398)
T Consensus 270 ~~~~~~y~~~~l~~~~~~~~~~~~i~~~i~~~~~~~~G~LsDriGRr~~~~~~~l~~~l~~~p~~-~~l~~~-~-~~~~~ 346 (438)
T PRK09952 270 TAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFF-MALEAQ-S-IFWIV 346 (438)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHHCC-C-HHHHH
T ss_conf 99999999987288899999999999999999999999999983634999999999999999999-998438-6-89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q ss_conf 989989999999999999999985346-676999999999999-99999999999998311---7999999999999999
Q gi|254780967|r 306 IAFFFLASFQFGLINSNFSSISMEPFS-HLAGTASSIFGFINT-VISTILGIIIGQSFNGT---TYPITIGFFGIAVSSF 380 (398)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~a~~l~~~~~~-~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~ 380 (398)
T Consensus 347 ~~~~~l~~~~~~~~~~~~~~~l~ElFPt~vR~TG~g~~Ynig~~i~Gg~aP~i~~~L~~~~~~~~~~~a~y~~~~~~i~l 426 (438)
T PRK09952 347 FFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISA 426 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999889999999868860557689999999999999999999999999768994799999999999999
Q ss_pred HHHHHHHCCHH
Q ss_conf 99999942200
Q gi|254780967|r 381 ICILIVEKNQM 391 (398)
Q Consensus 381 ~~~~~~~~~~~ 391 (398)
T Consensus 427 ~~~l~~r~~~~ 437 (438)
T PRK09952 427 MTALLMKDNQR 437 (438)
T ss_pred HHHHHCCCCCC
T ss_conf 99998055579