HHsearch alignment for GI: 254780967 and conserved domain: PRK09952

>PRK09952 shikimate transporter; Provisional.
Probab=100.00  E-value=1.8e-35  Score=212.00  Aligned_cols=377  Identities=15%  Similarity=0.121  Sum_probs=224.8

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHH-CCCHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             999886576699999999-9981-999889999-999999999---9999999999986508289999999999999998
Q gi|254780967|r   11 MAINSLGIDIILPCLPKI-SDSL-HLSNENYGQ-HLISFYLIG---YGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFI   84 (398)
Q Consensus        11 ~~~~~~~~~~~~p~lp~i-~~~l-~~s~~~~~~-~~~s~~~~~---~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~   84 (398)
T Consensus        31 ~~lE~yDf~iy~~~a~~i~~~~FFp~~~~~~~ll~~~~~fa~gfl~RPlGg~ifG~~gDr~GRk~~L~~si~~m~~~T~l  110 (438)
T PRK09952         31 AVVDWYDFLLYGITAALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATAL  110 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999978724999990799999999999999987589999999997303399999999999999999


Q ss_pred             HHCCCCHHH--------HCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC---C-
Q ss_conf             510011011--------1002232100111111100012332100011112212233100011111111112222---1-
Q gi|254780967|r   85 MVTINSFTG--------MLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATV---A-  152 (398)
Q Consensus        85 ~~~a~~~~~--------l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~---~-  152 (398)
T Consensus       111 ig~lPty~~IGi~ApilLv~~R~lQGl~~GGE~~~a~~~~~E~~p~~~Rg~~~s~~~~~~~~G~llas~~~~~l~~~l~~  190 (438)
T PRK09952        111 IGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTD  190 (438)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             99747689888899999999999978887612889999999968877732440499998899999999999999983688


Q ss_pred             ---CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC-CCCCCCCCCCCC-CCHHHHHHHHHH-HHHHCCHHH
Q ss_conf             ---11111014567888887777888761678864022101111-112333100000-000025677788-763100146
Q gi|254780967|r  153 ---LSGGWIGIFVCMGVITTFITLWYYIRFPETLDPRDVRPLNL-YAILHSFSLIFK-HRASTLYNIANS-LTMGAILGF  226 (398)
Q Consensus       153 ---~~~gWr~~f~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~  226 (398)
T Consensus       191 ~~~~~wGWRipFlig~l~~-li~l~iR~~l~Esp~f~~~~~~~~~~~~~~p~~e~~~~~~~~~l~~~~l~~~~~~~~y~~  269 (438)
T PRK09952        191 EQFLSWGWRIPFLFSIVLV-LIALWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIV  269 (438)
T ss_pred             HHHHHCCHHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8885314299999999999-999999982788878999876233443346699999986599999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf             8887654554315311015889-988657677889999985001565124688778889999999987325777640379
Q gi|254780967|r  227 VNSSQQIYVGIYQLGNLFPIAF-AVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIF  305 (398)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (398)
T Consensus       270 ~~~~~~y~~~~l~~~~~~~~~~~~i~~~i~~~~~~~~G~LsDriGRr~~~~~~~l~~~l~~~p~~-~~l~~~-~-~~~~~  346 (438)
T PRK09952        270 TAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFF-MALEAQ-S-IFWIV  346 (438)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHHCC-C-HHHHH
T ss_conf             99999999987288899999999999999999999999999983634999999999999999999-998438-6-89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q ss_conf             989989999999999999999985346-676999999999999-99999999999998311---7999999999999999
Q gi|254780967|r  306 IAFFFLASFQFGLINSNFSSISMEPFS-HLAGTASSIFGFINT-VISTILGIIIGQSFNGT---TYPITIGFFGIAVSSF  380 (398)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~a~~l~~~~~~-~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~  380 (398)
T Consensus       347 ~~~~~l~~~~~~~~~~~~~~~l~ElFPt~vR~TG~g~~Ynig~~i~Gg~aP~i~~~L~~~~~~~~~~~a~y~~~~~~i~l  426 (438)
T PRK09952        347 FFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISA  426 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999999999889999999868860557689999999999999999999999999768994799999999999999


Q ss_pred             HHHHHHHCCHH
Q ss_conf             99999942200
Q gi|254780967|r  381 ICILIVEKNQM  391 (398)
Q Consensus       381 ~~~~~~~~~~~  391 (398)
T Consensus       427 ~~~l~~r~~~~  437 (438)
T PRK09952        427 MTALLMKDNQR  437 (438)
T ss_pred             HHHHHCCCCCC
T ss_conf             99998055579