HHsearch alignment for GI: 254780967 and conserved domain: PRK11102

>PRK11102 bicyclomycin/multidrug efflux system; Provisional.
Probab=100.00  E-value=0  Score=407.29  Aligned_cols=375  Identities=24%  Similarity=0.481  Sum_probs=333.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf             98865766999999999981999889999999999999999999999998650828999999999999999851001101
Q gi|254780967|r   13 INSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFT   92 (398)
Q Consensus        13 ~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~~~~   92 (398)
T Consensus         2 l~pl~~d~~lPalp~i~~~~~~s~~~~~-~~~s~~~l~~a~~~l~~G~lsD~~GRr~~~~~~~~~~~i~~~~~~~a~~~~   80 (377)
T PRK11102          2 LMPLAIDMYLPALPVIAADFGVSAGSVQ-MTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTID   80 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             5228987999869999999794998999-999999999999999999999981888999999999999999999856799


Q ss_pred             HHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             11002232100111111100012332100011112212233100011111111112222111111014567888887777
Q gi|254780967|r   93 GMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFIT  172 (398)
Q Consensus        93 ~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~~~~~  172 (398)
T Consensus        81 ~l~~~R~lqG~~~~~~~~~~~a~i~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iGg~l-~~~~gWr~~F~~~~~~~~l~~  159 (377)
T PRK11102         81 QLIVMRFLQGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGYL-LVWFSWHSIFWVLALAAILAS  159 (377)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHH
T ss_conf             9999999986530013058899999707999999987999999997048888877999-813566899999999999999


Q ss_pred             HHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q ss_conf             8887616788640221011111123331000000000256777887631001468887654554315311-015889988
Q gi|254780967|r  173 LWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGN-LFPIAFAVG  251 (398)
Q Consensus       173 ~~~~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  251 (398)
T Consensus       160 ~l~~~~lpet~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~f~~~~p~~~~~~~gls~~~~gl~~~~~  239 (377)
T PRK11102        160 ALVFFLIPETLPPENRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIEIYGVSPQNFGYYFALN  239 (377)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             99999754457844678877999999999999586899999999999999999998347999998299989999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65767788999998500156512468877888999999998732577764037998998999999999999999998534
Q gi|254780967|r  252 GFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPF  331 (398)
Q Consensus       252 ~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (398)
T Consensus       240 ~~~~~~gs~l~grl~~r~g~~~~~~~gl~i~~~~~~~l~~~~~~---~~~~~~~~i~~~l~~~~~g~~~~~~~a~a~~~~  316 (377)
T PRK11102        240 IVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL---DLGFWALVVGVAAFVGCISMISSNAMAVILDEF  316 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999588999999999999999999999998---777999999999999999999999999997667


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             6676999999999999999999999999983117999999999999999999999422000
Q gi|254780967|r  332 SHLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPITIGFFGIAVSSFICILIVEKNQMF  392 (398)
Q Consensus       332 ~~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (398)
T Consensus       317 p~~aG~Asal~g~~~~~~ga~~~~l~~~~~~~~~~~l~~~~~~~~~la~l~~l~~~R~~~~  377 (377)
T PRK11102        317 PHMAGTASSLAGTLRFGIGAIVGALLSLAPFNSAWPMIWSMAFCSILSILFYLYASRPKKK  377 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             1177999999999999999999999998537987999999999999999999999073579