HHsearch alignment for GI: 254780967 and conserved domain: PRK11102
>PRK11102 bicyclomycin/multidrug efflux system; Provisional.
Probab=100.00 E-value=0 Score=407.29 Aligned_cols=375 Identities=24% Similarity=0.481 Sum_probs=333.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 98865766999999999981999889999999999999999999999998650828999999999999999851001101
Q gi|254780967|r 13 INSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFT 92 (398)
Q Consensus 13 ~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~~~~ 92 (398)
T Consensus 2 l~pl~~d~~lPalp~i~~~~~~s~~~~~-~~~s~~~l~~a~~~l~~G~lsD~~GRr~~~~~~~~~~~i~~~~~~~a~~~~ 80 (377)
T PRK11102 2 LMPLAIDMYLPALPVIAADFGVSAGSVQ-MTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTID 80 (377)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 5228987999869999999794998999-999999999999999999999981888999999999999999999856799
Q ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 11002232100111111100012332100011112212233100011111111112222111111014567888887777
Q gi|254780967|r 93 GMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFIT 172 (398)
Q Consensus 93 ~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~~~~~ 172 (398)
T Consensus 81 ~l~~~R~lqG~~~~~~~~~~~a~i~d~~~~~~~~~~~~~~~~~~~~~~~~~p~iGg~l-~~~~gWr~~F~~~~~~~~l~~ 159 (377)
T PRK11102 81 QLIVMRFLQGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGYL-LVWFSWHSIFWVLALAAILAS 159 (377)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999986530013058899999707999999987999999997048888877999-813566899999999999999
Q ss_pred HHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q ss_conf 8887616788640221011111123331000000000256777887631001468887654554315311-015889988
Q gi|254780967|r 173 LWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGN-LFPIAFAVG 251 (398)
Q Consensus 173 ~~~~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 251 (398)
T Consensus 160 ~l~~~~lpet~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~f~~~~p~~~~~~~gls~~~~gl~~~~~ 239 (377)
T PRK11102 160 ALVFFLIPETLPPENRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIEIYGVSPQNFGYYFALN 239 (377)
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999754457844678877999999999999586899999999999999999998347999998299989999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65767788999998500156512468877888999999998732577764037998998999999999999999998534
Q gi|254780967|r 252 GFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPF 331 (398)
Q Consensus 252 ~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (398)
T Consensus 240 ~~~~~~gs~l~grl~~r~g~~~~~~~gl~i~~~~~~~l~~~~~~---~~~~~~~~i~~~l~~~~~g~~~~~~~a~a~~~~ 316 (377)
T PRK11102 240 IVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL---DLGFWALVVGVAAFVGCISMISSNAMAVILDEF 316 (377)
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999588999999999999999999999998---777999999999999999999999999997667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 6676999999999999999999999999983117999999999999999999999422000
Q gi|254780967|r 332 SHLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPITIGFFGIAVSSFICILIVEKNQMF 392 (398)
Q Consensus 332 ~~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (398)
T Consensus 317 p~~aG~Asal~g~~~~~~ga~~~~l~~~~~~~~~~~l~~~~~~~~~la~l~~l~~~R~~~~ 377 (377)
T PRK11102 317 PHMAGTASSLAGTLRFGIGAIVGALLSLAPFNSAWPMIWSMAFCSILSILFYLYASRPKKK 377 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 1177999999999999999999999998537987999999999999999999999073579