HHsearch alignment for GI: 254780967 and conserved domain: PRK11646
>PRK11646 multidrug resistance protein MdtH; Provisional.
Probab=100.00 E-value=0 Score=270.53 Aligned_cols=378 Identities=12% Similarity=0.072 Sum_probs=275.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999988657669999999-999819998899999999999999999999999986508289999999999999998
Q gi|254780967|r 6 VIAMLMAINSLGIDIILPCLPK-ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFI 84 (398)
Q Consensus 6 ~l~~~~~~~~~~~~~~~p~lp~-i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~ 84 (398)
T Consensus 14 ~L~~~~~l~~lG~~mv~Pfl~iyl~~~lg~s~~~iG-lil~~~~l~~~~~~~~~G~LsDR~GrK~vii~gl~~~a~~~~~ 92 (400)
T PRK11646 14 FLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVG-IALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT 92 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999860799889999-9999999999999861468888618819999999999999999
Q ss_pred HHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 51001101110022321001111111000123321000111122122331000111111111122221111110145678
Q gi|254780967|r 85 MVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCM 164 (398)
Q Consensus 85 ~~~a~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~ 164 (398)
T Consensus 93 ~a~a~s~~~l~~~~~l~G~g~~~~~pa~~Aliad~t~~~~R~~~f~l~~~a~niG~~iGpllGg~l~~--~~~~~~f~~~ 170 (400)
T PRK11646 93 MGIAHEPWLLWFSCILSGLGGTLFDPPRSALVIKLIRPQQRGRFFSLLMMQDSAGAVIGALLGSWLLQ--YDFRLVCATG 170 (400)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_conf 99973599999999999998564679999999970887689999999999999999999999999998--6489999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 88887777888761678864022101111112333100000000025677788763100146888765455431531101
Q gi|254780967|r 165 GVITTFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNLF 244 (398)
Q Consensus 165 ~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (398)
T Consensus 171 a~~~~l~~~~~~~~~p~~~~~~~~-----~~~~~~~~~vl~dr~f~~~~l~~~~~~~~~~q~~~~lpl~~~~~~~~~~~~ 245 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPAYKLSTVR-----TPVREGMTRVLRDKRFVTYVLTLAGYYMLAVQVMLMLPIMVNDIAGSPSAV 245 (400)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCC-----CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 999999999999957866666667-----636778999972688999999999999999999999999999855878999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58899886576778899-99985001565124688778889999999987325777640379989989999999999999
Q gi|254780967|r 245 PIAFAVGGFAMSIASFI-NSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNF 323 (398)
Q Consensus 245 ~~~~~~~~~~~~~~~~~-~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (398)
T Consensus 246 g~l~~~~~~v~v~lq~pl~~~~~kr~~~~~~l~~G~~l~~~g~---~~~~~~~----~~~~~~i~~~lftiGe~l~~P~~ 318 (400)
T PRK11646 246 KWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSM---FPIGMVS----NLQQLFTLICLFYIGSIIAEPAR 318 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999985472999999999999999---9999998----89999999999999999997548
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 999985346-67699999999999999999999999998311------79999999999999999999994220003430
Q gi|254780967|r 324 SSISMEPFS-HLAGTASSIFGFINTVISTILGIIIGQSFNGT------TYPITIGFFGIAVSSFICILIVEKNQMFRKTE 396 (398)
Q Consensus 324 ~~~~~~~~~-~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 396 (398)
T Consensus 319 ~s~va~lap~~~rG~y~G~~~~~~~lG~~~Gp~~gG~L~d~~~~~~~p~~~W~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 398 (400)
T PRK11646 319 ETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALHQPELPWMMLGIIGIITLLALGWQFSQKRIARRML 398 (400)
T ss_pred HHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999838965432376299999999999889899999955302489857999999999999999999998999986551
Q ss_pred CC
Q ss_conf 69
Q gi|254780967|r 397 LR 398 (398)
Q Consensus 397 ~r 398 (398)
T Consensus 399 ~~ 400 (400)
T PRK11646 399 ER 400 (400)
T ss_pred CC
T ss_conf 39