HHsearch alignment for GI: 254780967 and conserved domain: PRK11652
>PRK11652 emrD multidrug resistance protein D; Provisional.
Probab=100.00 E-value=0 Score=418.70 Aligned_cols=383 Identities=22% Similarity=0.366 Sum_probs=331.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 93899999999998865766999999999981999889999999999999999999999998650828999999999999
Q gi|254780967|r 1 MEFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHII 80 (398)
Q Consensus 1 ~~~i~~l~~~~~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i 80 (398)
T Consensus 7 ~~~i~~l~~l~~~~~la~d~ylPalP~ia~~~~~s~~~vq-~tls~f~~g~a~~ql~~GpLSDr~GRk~vll~gl~lf~i 85 (394)
T PRK11652 7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGALQ-AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL 85 (394)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 4799999999999999998898609999999698998999-999999999999999999999882886999999999999
Q ss_pred HHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99985100110111002232100111111100012332100011112212233100011111111112222111111014
Q gi|254780967|r 81 STFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGI 160 (398)
Q Consensus 81 ~~~~~~~a~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~ 160 (398)
T Consensus 86 ~s~~~a~a~si~~ll~~R~lQG~Ga~~~~v~~~AiirD~~~g~~~ak~~s~~~~~~~~~p~laP~iGg~-l~~~~gWr~~ 164 (394)
T PRK11652 86 GTLVALTAHSLTVLIAASAIQGMGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILFSPLLAPLIGGL-LTTLFGWRAC 164 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHH
T ss_conf 999999876799999999982766510000999998863689999999999889999851026169999-9800559999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf 56788888777788876167886402210111111233310000000002567778876310014688876545543153
Q gi|254780967|r 161 FVCMGVITTFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQL 240 (398)
Q Consensus 161 f~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (398)
T Consensus 165 F~~l~~~~~~~~l~~~~~lpET~~~~~~~~----~~~~~y~~ll~~~~f~~~~l~~~~~~~~~~~f~~~~p~v~~~~~gl 240 (394)
T PRK11652 165 YLFLLVFGAGVTFSMARWMPETLPKDARRT----RVLASYKTLLGNRRFNCYLLMLIATLAGIAVFEACAGVLMGAVLGL 240 (394)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCH----HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999996888899645630----1899999998675799999999999999999999649999998279
Q ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11-01588998865767788999998500156512468877888999999998732577764037998998999999999
Q gi|254780967|r 241 GN-LFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLI 319 (398)
Q Consensus 241 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (398)
T Consensus 241 s~~~~g~~f~~~~~~~~~g~~l~~rl~~r~~~~--~~~g~~~~~~~~~~~l~~~~--~~~~~~~~l~~~~~l~~~g~G~~ 316 (394)
T PRK11652 241 SSMTVSILFILPIPGYFFGAWFAGRPNKRFSTL--MWQSVICCLLGGLFMWIPGW--FGVMNVWTLLVPAALFFFGAGML 316 (394)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999999999999999999999999999999--99999999999999999998--87745999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999853466769999999999999999999999999831179999999999999999999994220003
Q gi|254780967|r 320 NSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPITIGFFGIAVSSFICILIVEKNQMFR 393 (398)
Q Consensus 320 ~~~~~~~~~~~~~~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 393 (398)
T Consensus 317 ~p~~~a~al~~~~~~aGtAsal~g~~q~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~l~~r~~~~ 390 (394)
T PRK11652 317 FPLATSGAMEPFPFLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQGSLGLLMTLMGLLILLCWLPLASRMSHQ 390 (394)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89999999764843030999999999999999999999971369768999999999999999999998634456