HHsearch alignment for GI: 254780967 and conserved domain: PRK11663
>PRK11663 regulatory protein UhpC; Provisional.
Probab=100.00 E-value=0 Score=303.76 Aligned_cols=381 Identities=15% Similarity=0.125 Sum_probs=277.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 99886576699999999998199988999999999999999999999999865082899999999999999985100110
Q gi|254780967|r 12 AINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSF 91 (398)
Q Consensus 12 ~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~~~ 91 (398)
T Consensus 33 ~~~y~~R~~~s~~~p~i~~e~glt~~q~G-~i~s~f~~~Yal~q~~~G~L~Dr~g~r~~l~~~~~~~~~~~~~~g~~~~~ 111 (434)
T PRK11663 33 ALFYFTRKSFNAAMPEMLADLGLSRSDIG-LLATLFYITYGVSKFVSGIVSDRSNPRYFMGIGLIATGIINILFGFSSSL 111 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99998605799869999988497998999-99999999999999767999987064499999999999999999974328
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 11100223210011111110001233210001111221223310001111111111222211111101456788888777
Q gi|254780967|r 92 TGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFI 171 (398)
Q Consensus 92 ~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~~~~ 171 (398)
T Consensus 112 ~~~~~~r~l~G~~~~~~~p~~~~~i~~Wfp~~eRg~a~gi~~~~~~vG~~l~~~l~~~i-~~~~gWr~~F~~~g~~~~v~ 190 (434)
T PRK11663 112 WAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI-ALHYGWRYGMIIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999999985601689999999984888899999999999877788889999999-99806299999999999999
Q ss_pred HHHHHHHCCCCCCHH------H----H-C-CCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 788876167886402------2----1-0-1111112333-----10000000002567778876310014688876545
Q gi|254780967|r 172 TLWYYIRFPETLDPR------D----V-R-PLNLYAILHS-----FSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIY 234 (398)
Q Consensus 172 ~~~~~~~~pet~~~~------~----~-~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (398)
T Consensus 191 ~~~~~~~~~d~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~WlP~yL 270 (434)
T PRK11663 191 GLFLCWRLRDRPQAMGLPSVGEWRHDALELAQEQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYL 270 (434)
T ss_pred HHHHHHHCCCCHHHCCCCCHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999832688766499971121023455543302457758999999996488999999999999999999983265888
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 54315311-01588998865767788999998500156512468877888999999998732577764037998998999
Q gi|254780967|r 235 VGIYQLGN-LFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLAS 313 (398)
Q Consensus 235 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (398)
T Consensus 271 ~~~~g~s~~~a~~~~~l~~ig~~iG~l~~G~lSDrl~~~~r~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~l~~~G 348 (434)
T PRK11663 271 SETLGYDLVTANSAVSMFELGGFIGSLVAGWGSDKLFNGNRGPMNLIFAAGIFLSVGSLWLM-PF-ASYVMQAACFFTIG 348 (434)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHHH
T ss_conf 87608889999999999999999999988899998734773189999999999999999983-63-12999999999999
Q ss_pred H-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCH
Q ss_conf 9-9999999999999853-4667699999999999999999999999998311799999-99999999999999994220
Q gi|254780967|r 314 F-QFGLINSNFSSISMEP-FSHLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPITI-GFFGIAVSSFICILIVEKNQ 390 (398)
Q Consensus 314 ~-~~~~~~~~~~~~~~~~-~~~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 390 (398)
T Consensus 349 ~~~~g~-~~l~~~~~~~~~~~~~~gta~G~~n~~g~lG~~l~~~~~G~i~~~~gw~~~f~~l~~~a~v~~~illp~~~~~ 427 (434)
T PRK11663 349 FFVFGP-QMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALAGYPLAKVLETWHWTGFFVVISIAAGISALLLLPFLNAQ 427 (434)
T ss_pred HHHHHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999989-9999999998368210237989988999999999999999999703858999999999999999999981767
Q ss_pred HHHHHHC
Q ss_conf 0034306
Q gi|254780967|r 391 MFRKTEL 397 (398)
Q Consensus 391 ~~r~~~~ 397 (398)
T Consensus 428 ~p~~~~~ 434 (434)
T PRK11663 428 APREAQE 434 (434)
T ss_pred CCCCCCC
T ss_conf 8764459