HHsearch alignment for GI: 254780967 and conserved domain: PRK11663

>PRK11663 regulatory protein UhpC; Provisional.
Probab=100.00  E-value=0  Score=303.76  Aligned_cols=381  Identities=15%  Similarity=0.125  Sum_probs=277.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf             99886576699999999998199988999999999999999999999999865082899999999999999985100110
Q gi|254780967|r   12 AINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSF   91 (398)
Q Consensus        12 ~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~~~   91 (398)
T Consensus        33 ~~~y~~R~~~s~~~p~i~~e~glt~~q~G-~i~s~f~~~Yal~q~~~G~L~Dr~g~r~~l~~~~~~~~~~~~~~g~~~~~  111 (434)
T PRK11663         33 ALFYFTRKSFNAAMPEMLADLGLSRSDIG-LLATLFYITYGVSKFVSGIVSDRSNPRYFMGIGLIATGIINILFGFSSSL  111 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             99998605799869999988497998999-99999999999999767999987064499999999999999999974328


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             11100223210011111110001233210001111221223310001111111111222211111101456788888777
Q gi|254780967|r   92 TGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFI  171 (398)
Q Consensus        92 ~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~~~~  171 (398)
T Consensus       112 ~~~~~~r~l~G~~~~~~~p~~~~~i~~Wfp~~eRg~a~gi~~~~~~vG~~l~~~l~~~i-~~~~gWr~~F~~~g~~~~v~  190 (434)
T PRK11663        112 WAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI-ALHYGWRYGMIIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHH
T ss_conf             99999999999985601689999999984888899999999999877788889999999-99806299999999999999


Q ss_pred             HHHHHHHCCCCCCHH------H----H-C-CCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             788876167886402------2----1-0-1111112333-----10000000002567778876310014688876545
Q gi|254780967|r  172 TLWYYIRFPETLDPR------D----V-R-PLNLYAILHS-----FSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIY  234 (398)
Q Consensus       172 ~~~~~~~~pet~~~~------~----~-~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (398)
T Consensus       191 ~~~~~~~~~d~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~WlP~yL  270 (434)
T PRK11663        191 GLFLCWRLRDRPQAMGLPSVGEWRHDALELAQEQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYL  270 (434)
T ss_pred             HHHHHHHCCCCHHHCCCCCHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             99999832688766499971121023455543302457758999999996488999999999999999999983265888


Q ss_pred             HHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             54315311-01588998865767788999998500156512468877888999999998732577764037998998999
Q gi|254780967|r  235 VGIYQLGN-LFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLAS  313 (398)
Q Consensus       235 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (398)
T Consensus       271 ~~~~g~s~~~a~~~~~l~~ig~~iG~l~~G~lSDrl~~~~r~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~l~~~G  348 (434)
T PRK11663        271 SETLGYDLVTANSAVSMFELGGFIGSLVAGWGSDKLFNGNRGPMNLIFAAGIFLSVGSLWLM-PF-ASYVMQAACFFTIG  348 (434)
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHHH
T ss_conf             87608889999999999999999999988899998734773189999999999999999983-63-12999999999999


Q ss_pred             H-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCH
Q ss_conf             9-9999999999999853-4667699999999999999999999999998311799999-99999999999999994220
Q gi|254780967|r  314 F-QFGLINSNFSSISMEP-FSHLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPITI-GFFGIAVSSFICILIVEKNQ  390 (398)
Q Consensus       314 ~-~~~~~~~~~~~~~~~~-~~~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  390 (398)
T Consensus       349 ~~~~g~-~~l~~~~~~~~~~~~~~gta~G~~n~~g~lG~~l~~~~~G~i~~~~gw~~~f~~l~~~a~v~~~illp~~~~~  427 (434)
T PRK11663        349 FFVFGP-QMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALAGYPLAKVLETWHWTGFFVVISIAAGISALLLLPFLNAQ  427 (434)
T ss_pred             HHHHHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999989-9999999998368210237989988999999999999999999703858999999999999999999981767


Q ss_pred             HHHHHHC
Q ss_conf             0034306
Q gi|254780967|r  391 MFRKTEL  397 (398)
Q Consensus       391 ~~r~~~~  397 (398)
T Consensus       428 ~p~~~~~  434 (434)
T PRK11663        428 APREAQE  434 (434)
T ss_pred             CCCCCCC
T ss_conf             8764459