HHsearch alignment for GI: 254780967 and conserved domain: TIGR00710
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily; InterPro: IPR004812 The drug resistance transporter Bcr/CflA proteins are predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in Escherichia coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=424.02 Aligned_cols=381 Identities=27% Similarity=0.563 Sum_probs=342.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 38999999999988657669999999999819998899999999999999999999999986508289999999999999
Q gi|254780967|r 2 EFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIIS 81 (398)
Q Consensus 2 ~~i~~l~~~~~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~ 81 (398)
T Consensus 5 ~~~~~L~~L~~L~pl~~DMYLPa~p~i~~~L~~~as~vQ-~tLt~yl~G~a~GQL~~GPlSD~~GRrPvlL~G~~~fa~~ 83 (400)
T TIGR00710 5 AFVLLLGLLSILGPLGIDMYLPAFPEIAKDLSVSASLVQ-LTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLLIFALS 83 (400)
T ss_pred HHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999999898763202112521207898986287866899-9999999999998986523332036723889999999999
Q ss_pred HHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHC-CCCCCCCCCCCCCEECCCCCCCCCCCC-CCCCCCCCCCH
Q ss_conf 9985100110111002232100111111100012332100-011112212233100011111111112-22211111101
Q gi|254780967|r 82 TFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYD-GRDMAKVLSIAMMIFMIMPILAPSIGQ-ATVALSGGWIG 159 (398)
Q Consensus 82 ~~~~~~a~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~-~~~~~~~~~~~~~~~~~g~~igp~ig~-~l~~~~~gWr~ 159 (398)
T Consensus 84 Sl~~~~~~ni~~L~~lRF~Qa~gasA~~V~~~AlvRD~Y~G~~e~s~~~s~l~~~~~~~P~~aP~~Ggai~~~~~l~Wha 163 (400)
T TIGR00710 84 SLGLALSNNIETLLVLRFLQAFGASAALVISQALVRDIYPGREELSKIYSILMLVLALAPAVAPLIGGAIYVLVFLSWHA 163 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999985199999999999999989999999888502032578999999999999999878888869999998520999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
Q ss_conf 45678888877778887616788640221011111123331000000000256777887631001468887654554315
Q gi|254780967|r 160 IFVCMGVITTFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQ 239 (398)
Q Consensus 160 ~f~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (398)
T Consensus 164 IF~~L~l~~~~l~a~~f~~~pET~~~~~r~P~~~~~~~~~f~~l~k~k~~~gY~L~~ga~~g~~Faf~~~~Pfv~~~~~g 243 (400)
T TIGR00710 164 IFAVLSLIGILLSALIFFLLPETLPKEKRIPLQISTSVETFLLLLKDKEFLGYALIYGASFGGFFAFLSGAPFVYIDIMG 243 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999855122740103740300139998678876888999999999868789999841788640014
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH---------HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 311-015889988657677889999985001565124688---------7788899999999873257776403799899
Q gi|254780967|r 240 LGN-LFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYS---------LLIFFMITGSWLLVQITSNHPIHLLIFIAFF 309 (398)
Q Consensus 240 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (398)
T Consensus 244 Vsp~~fg~lf~~~~~a~i~g~f~~gr~~~k~~~~~~lr~~~GfifslCGl~~~~~--~a~~l~~~~~~~l~~~~~~i~~~ 321 (400)
T TIGR00710 244 VSPSVFGLLFALNIIAMIFGGFLNGRFIKKIGAKSLLRIAVGFIFSLCGLVLFIV--SAVLLVITALLGLGSWLLIIGPM 321 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6567789999999999999999998666543100147899999999999999999--99999999998679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999998534667699999999999999999999999-998311799999999999999999999
Q gi|254780967|r 310 FLASFQFGLINSNFSSISMEPFSHLAGTASSIFGFINTVISTILGIIIG-QSFNGTTYPITIGFFGIAVSSFICILI 385 (398)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~a~~l~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (398)
T Consensus 322 ~~~~~g~~~~~s~a~~~AL~~f~h~aGtA~al~g~l~~~l~a~vg~lvs~~i~~~Ta~p~~~~~~~~av~~vl~~y~ 398 (400)
T TIGR00710 322 IFVGIGVSMVSSIAMALALEKFPHVAGTASALLGTLRLVLGAIVGLLVSSLIKINTAWPMVLSCLVLAVISVLAFYY 398 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99997688999999999862158741019999999999999999999997516761489999999999999999973