HHsearch alignment for GI: 254780967 and conserved domain: TIGR00710
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily; InterPro: IPR004812 The drug resistance transporter Bcr/CflA proteins are predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in Escherichia coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=98.88 E-value=1.8e-06 Score=52.17 Aligned_cols=170 Identities=14% Similarity=0.141 Sum_probs=100.7
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 76310014688876545543153110158899886576778899999850015651246887788899999999873257
Q gi|254780967|r 218 LTMGAILGFVNSSQQIYVGIYQLGNLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSN 297 (398)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (398)
T Consensus 16 L~pl~~DMYLPa~p~i~~~L~~~as~vQ~tLt~yl~G~a~GQL~~GPlSD~~GRrPvlL~G~~~fa~~Sl~~~~~~---- 91 (400)
T TIGR00710 16 LGPLGIDMYLPAFPEIAKDLSVSASLVQLTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLLIFALSSLGLALSN---- 91 (400)
T ss_pred HCCCCHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 3202112521207898986287866899999999999999898652333203672388999999999999999985----
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HHHHH-HHHH
Q ss_conf 77640379989989999999999999999985346-6-76999999999999999999999999--983-11799-9999
Q gi|254780967|r 298 HPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFS-H-LAGTASSIFGFINTVISTILGIIIGQ--SFN-GTTYP-ITIG 371 (398)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~G~a~~l~~~~~~~~~~~~~~~~g~--~~~-~~~~~-~~~~ 371 (398)
T Consensus 92 ---ni~~L~~lRF~Qa~gasA~~V~~~AlvRD~Y~G~~e~s~~~s~l~~~~-~~~P~~aP~~Ggai~~~~~l~WhaIF~~ 167 (400)
T TIGR00710 92 ---NIETLLVLRFLQAFGASAALVISQALVRDIYPGREELSKIYSILMLVL-ALAPAVAPLIGGAIYVLVFLSWHAIFAV 167 (400)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---199999999999999989999999888502032578999999999999-9998788888699999985209999999
Q ss_pred HHHHHHHH-HHHHHHHHCCHHHHHH
Q ss_conf 99999999-9999999422000343
Q gi|254780967|r 372 FFGIAVSS-FICILIVEKNQMFRKT 395 (398)
Q Consensus 372 ~~~~~~~~-~~~~~~~~~~~~~r~~ 395 (398)
T Consensus 168 L~l~~~~l~a~~f~~~pET~~~~~r 192 (400)
T TIGR00710 168 LSLIGILLSALIFFLLPETLPKEKR 192 (400)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHCC
T ss_conf 9999999999999855122740103