HHsearch alignment for GI: 254780967 and conserved domain: TIGR00711

>TIGR00711 efflux_EmrB drug resistance MFS transporter, drug:H+ antiporter-1 (14 Spanner) (DHA2) family; InterPro: IPR004638 This subfamily of drug efflux proteins, a part of the major facilitator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in Escherichia coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.; GO: 0006810 transport, 0016021 integral to membrane.
Probab=100.00  E-value=0  Score=278.69  Aligned_cols=354  Identities=19%  Similarity=0.248  Sum_probs=287.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999999988657669999999999819998899999999999999999999999986508289999999999999998
Q gi|254780967|r    5 IVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFI   84 (398)
Q Consensus         5 ~~l~~~~~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~   84 (398)
T Consensus         5 ~~l~~g~FMa~LD~Tiv~va~p~~~~~lg~s~~~~~-Wv~TsY~~A~a~~IPl~gwLa~R~G~r~lFl~~~~~Ft~~S~~   83 (501)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNVAIPTLAGDLGASLSQVQ-WVITSYMLANAIVIPLTGWLAKRFGTRKLFLISTLAFTLGSLL   83 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999877632114410023-2314678889999988999998708447899999999999999


Q ss_pred             HHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             51001101110022321001111111000123321000111122122331000111111111122221111110145678
Q gi|254780967|r   85 MVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCM  164 (398)
Q Consensus        85 ~~~a~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~  164 (398)
T Consensus        84 Cg~A~nl~~lIifR~~QG~~gG~l~Pl~~~~l~~~~PP~~Rg~~~~~~Gl~v~~AP~~GP~LGGwI-~e~~~Wrw~F~~N  162 (501)
T TIGR00711        84 CGVANNLELLIIFRVIQGFGGGLLIPLSFSLLLNIYPPEKRGLAMAIWGLTVLVAPALGPTLGGWI-IENYEWRWIFYIN  162 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHH-HHCCCCHHEEEHH
T ss_conf             998520899999999988622048999999999747912158356421066874202353104688-7326222202125


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHH-HHCCCCC----------------------CCCCCC----------------------
Q ss_conf             8888777788876167886402-2101111----------------------112333----------------------
Q gi|254780967|r  165 GVITTFITLWYYIRFPETLDPR-DVRPLNL----------------------YAILHS----------------------  199 (398)
Q Consensus       165 ~~~~~~~~~~~~~~~pet~~~~-~~~~~~~----------------------~~~~~~----------------------  199 (398)
T Consensus       163 vPiG~~v~~~a~~~l~~d~~~~~~~~~~D~~G~~L~~~g~~~Ll~~ls~g~~~GW~~~~~il~~~i~~~~~~~~fv~~se  242 (501)
T TIGR00711       163 VPIGIIVVVVALFILPEDREKEKASKNLDFLGLLLLSVGLGSLLYVLSEGQEEGWFDSNLILILSIVGLVAIIAFVVRSE  242 (501)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78999999999998446666616663112788999999999999875215668899863156999999999999999787


Q ss_pred             --------CCCCCCCCHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHH-HHHC
Q ss_conf             --------1000000000256-777887631001468887654554315311-0158899886576778899999-8500
Q gi|254780967|r  200 --------FSLIFKHRASTLY-NIANSLTMGAILGFVNSSQQIYVGIYQLGN-LFPIAFAVGGFAMSIASFINSR-LVEK  268 (398)
Q Consensus       200 --------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-l~~r  268 (398)
T Consensus       243 l~~~nP~~D~~~F~~~~Ft~~f~~~~~~~~~~lyg~~~LLP~~Lq~~~~~~~~~~Gl~~~P~gl~~~l~sPIaG~~~~~k  322 (501)
T TIGR00711       243 LTDDNPLVDLRLFKYRNFTIGFCVYSLLLGLGLYGAVYLLPLYLQQVLGYTALQAGLHILPVGLAPLLSSPIAGRMLGDK  322 (501)
T ss_pred             HCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             41468800443402025788999999999999999999999999986279978999999889999999707999998414


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf             1565124688778889999999987325777640379989-989999999999999999985346-67699999999999
Q gi|254780967|r  269 FGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAF-FFLASFQFGLINSNFSSISMEPFS-HLAGTASSIFGFIN  346 (398)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~a~~l~~~~~  346 (398)
T Consensus       323 ~~~R~l~~ig~~~~a~~~y---~~~~~~~~~~~f~~~~~~G~~i~G~g~~~~fmP~~~~al~~Lp~~~~~~gs~L~n~~R  399 (501)
T TIGR00711       323 IDPRLLVTIGLILYAVGFY---LRAFTLTPDTDFLAIALPGQFIRGFGMGCFFMPLTTIALSKLPAEKVARGSSLSNFLR  399 (501)
T ss_pred             CCHHHHHHHHHHHHHHHHH---HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             6806899999999999998---8852215578618888677999999999999875577761252357622689999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999831
Q gi|254780967|r  347 TVISTILGIIIGQSFNG  363 (398)
Q Consensus       347 ~~~~~~~~~~~g~~~~~  363 (398)
T Consensus       400 ~~gGSiGTal~t~~~~n  416 (501)
T TIGR00711       400 QLGGSIGTALITTILTN  416 (501)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             98889999999999986