HHsearch alignment for GI: 254780967 and conserved domain: TIGR00711
>TIGR00711 efflux_EmrB drug resistance MFS transporter, drug:H+ antiporter-1 (14 Spanner) (DHA2) family; InterPro: IPR004638 This subfamily of drug efflux proteins, a part of the major facilitator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in Escherichia coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.; GO: 0006810 transport, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=278.69 Aligned_cols=354 Identities=19% Similarity=0.248 Sum_probs=287.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999988657669999999999819998899999999999999999999999986508289999999999999998
Q gi|254780967|r 5 IVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFI 84 (398)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~ 84 (398)
T Consensus 5 ~~l~~g~FMa~LD~Tiv~va~p~~~~~lg~s~~~~~-Wv~TsY~~A~a~~IPl~gwLa~R~G~r~lFl~~~~~Ft~~S~~ 83 (501)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIPTLAGDLGASLSQVQ-WVITSYMLANAIVIPLTGWLAKRFGTRKLFLISTLAFTLGSLL 83 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999877632114410023-2314678889999988999998708447899999999999999
Q ss_pred HHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 51001101110022321001111111000123321000111122122331000111111111122221111110145678
Q gi|254780967|r 85 MVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCM 164 (398)
Q Consensus 85 ~~~a~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~ 164 (398)
T Consensus 84 Cg~A~nl~~lIifR~~QG~~gG~l~Pl~~~~l~~~~PP~~Rg~~~~~~Gl~v~~AP~~GP~LGGwI-~e~~~Wrw~F~~N 162 (501)
T TIGR00711 84 CGVANNLELLIIFRVIQGFGGGLLIPLSFSLLLNIYPPEKRGLAMAIWGLTVLVAPALGPTLGGWI-IENYEWRWIFYIN 162 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHH-HHCCCCHHEEEHH
T ss_conf 998520899999999988622048999999999747912158356421066874202353104688-7326222202125
Q ss_pred HHHHHHHHHHHHHHCCCCCCHH-HHCCCCC----------------------CCCCCC----------------------
Q ss_conf 8888777788876167886402-2101111----------------------112333----------------------
Q gi|254780967|r 165 GVITTFITLWYYIRFPETLDPR-DVRPLNL----------------------YAILHS---------------------- 199 (398)
Q Consensus 165 ~~~~~~~~~~~~~~~pet~~~~-~~~~~~~----------------------~~~~~~---------------------- 199 (398)
T Consensus 163 vPiG~~v~~~a~~~l~~d~~~~~~~~~~D~~G~~L~~~g~~~Ll~~ls~g~~~GW~~~~~il~~~i~~~~~~~~fv~~se 242 (501)
T TIGR00711 163 VPIGIIVVVVALFILPEDREKEKASKNLDFLGLLLLSVGLGSLLYVLSEGQEEGWFDSNLILILSIVGLVAIIAFVVRSE 242 (501)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999999998446666616663112788999999999999875215668899863156999999999999999787
Q ss_pred --------CCCCCCCCHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHH-HHHC
Q ss_conf --------1000000000256-777887631001468887654554315311-0158899886576778899999-8500
Q gi|254780967|r 200 --------FSLIFKHRASTLY-NIANSLTMGAILGFVNSSQQIYVGIYQLGN-LFPIAFAVGGFAMSIASFINSR-LVEK 268 (398)
Q Consensus 200 --------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-l~~r 268 (398)
T Consensus 243 l~~~nP~~D~~~F~~~~Ft~~f~~~~~~~~~~lyg~~~LLP~~Lq~~~~~~~~~~Gl~~~P~gl~~~l~sPIaG~~~~~k 322 (501)
T TIGR00711 243 LTDDNPLVDLRLFKYRNFTIGFCVYSLLLGLGLYGAVYLLPLYLQQVLGYTALQAGLHILPVGLAPLLSSPIAGRMLGDK 322 (501)
T ss_pred HCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 41468800443402025788999999999999999999999999986279978999999889999999707999998414
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 1565124688778889999999987325777640379989-989999999999999999985346-67699999999999
Q gi|254780967|r 269 FGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAF-FFLASFQFGLINSNFSSISMEPFS-HLAGTASSIFGFIN 346 (398)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~a~~l~~~~~ 346 (398)
T Consensus 323 ~~~R~l~~ig~~~~a~~~y---~~~~~~~~~~~f~~~~~~G~~i~G~g~~~~fmP~~~~al~~Lp~~~~~~gs~L~n~~R 399 (501)
T TIGR00711 323 IDPRLLVTIGLILYAVGFY---LRAFTLTPDTDFLAIALPGQFIRGFGMGCFFMPLTTIALSKLPAEKVARGSSLSNFLR 399 (501)
T ss_pred CCHHHHHHHHHHHHHHHHH---HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 6806899999999999998---8852215578618888677999999999999875577761252357622689999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999831
Q gi|254780967|r 347 TVISTILGIIIGQSFNG 363 (398)
Q Consensus 347 ~~~~~~~~~~~g~~~~~ 363 (398)
T Consensus 400 ~~gGSiGTal~t~~~~n 416 (501)
T TIGR00711 400 QLGGSIGTALITTILTN 416 (501)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 98889999999999986