HHsearch alignment for GI: 254780967 and conserved domain: TIGR00711
>TIGR00711 efflux_EmrB drug resistance MFS transporter, drug:H+ antiporter-1 (14 Spanner) (DHA2) family; InterPro: IPR004638 This subfamily of drug efflux proteins, a part of the major facilitator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in Escherichia coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.; GO: 0006810 transport, 0016021 integral to membrane.
Probab=98.95 E-value=2.3e-08 Score=62.65 Aligned_cols=118 Identities=14% Similarity=0.203 Sum_probs=77.0
Q ss_pred HHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHHCC----CCHHHHCCC-
Q ss_conf 999-999819998899999999999999999999999-9865082899999999999999985100----110111002-
Q gi|254780967|r 25 LPK-ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGP-LSDRFGRKIVMMFGLVIHIISTFIMVTI----NSFTGMLCM- 97 (398)
Q Consensus 25 lp~-i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~-l~Dr~Grr~~l~~g~~~~~i~~~~~~~a----~~~~~l~~~- 97 (398)
T Consensus 282 LP~~Lq~~~~~~~~~~G-l~~~P~gl~~~l~sPIaG~~~~~k~~~R~l~~ig~~~~a~~~y~~~~~~~~~~~f~~~~~~G 360 (501)
T TIGR00711 282 LPLYLQQVLGYTALQAG-LHILPVGLAPLLSSPIAGRMLGDKIDPRLLVTIGLILYAVGFYLRAFTLTPDTDFLAIALPG 360 (501)
T ss_pred HHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99999986279978999-99988999999970799999841468068999999999999988852215578618888677
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 2321001111111000123321000111122122331000111111
Q gi|254780967|r 98 RLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILA 143 (398)
Q Consensus 98 r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~ig 143 (398)
T Consensus 361 ~~i~G~g~~~~fmP~~~~al~~Lp~~~~~~gs~L~n~~R~~gGSiG 406 (501)
T TIGR00711 361 QFIRGFGMGCFFMPLTTIALSKLPAEKVARGSSLSNFLRQLGGSIG 406 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998755777612523576226899999999888999