HHsearch alignment for GI: 254780967 and conserved domain: TIGR00792
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter; InterPro: IPR001927 It has been shown that integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. This collection of sequences represents the sodium: galactoside symporter family (SGF). Like sugar transport proteins, these integral membrane proteins are predicted to comprise twelve membrane spanning domains. ; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0016020 membrane.
Probab=99.77 E-value=1e-15 Score=103.15 Aligned_cols=334 Identities=17% Similarity=0.231 Sum_probs=210.1
Q ss_pred HHHHHHHHCCCHHHHH----HHHHHHHHH---HHHHHHHHHHHHHH------HCCC-HHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999998199988999----999999999---99999999999986------5082-89999999999999998510011
Q gi|254780967|r 25 LPKISDSLHLSNENYG----QHLISFYLI---GYGIAQIFYGPLSD------RFGR-KIVMMFGLVIHIISTFIMVTINS 90 (398)
Q Consensus 25 lp~i~~~l~~s~~~~~----~~~~s~~~~---~~~i~~~~~G~l~D------r~Gr-r~~l~~g~~~~~i~~~~~~~a~~ 90 (398)
T Consensus 23 ~~fyTDv~G~~a~~~G~n~~iLiTtlflV~Ri~dAi~DP~~G~~vD~T~~I~rwGKFRPw~L~Ga~p~~~~~vL~F~~~~ 102 (470)
T TIGR00792 23 LFFYTDVLGLSAAIVGANKLILITTLFLVARILDAITDPIMGLIVDRTRNITRWGKFRPWLLIGAIPFAIVLVLLFTTPD 102 (470)
T ss_pred HHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCC
T ss_conf 99886215684311234532678999999999999833467567524458887964330002017899999999982457
Q ss_pred HH----------HHCCCCCCCCCCCCCCCCCCHHHHHHH-HCCCCCCCCCCCCCCEECCCC-----CCCCCC---CCCC-
Q ss_conf 01----------110022321001111111000123321-000111122122331000111-----111111---1222-
Q gi|254780967|r 91 FT----------GMLCMRLIQGIGGAAPRIITISIIRDI-YDGRDMAKVLSIAMMIFMIMP-----ILAPSI---GQAT- 150 (398)
Q Consensus 91 ~~----------~l~~~r~l~G~g~~~~~~~~~a~i~~~-~~~~~~~~~~~~~~~~~~~g~-----~igp~i---g~~l- 150 (398)
T Consensus 103 ~~~~~n~~~~~v~a~~tYi~~g~~Ys~~niPy~sl~p~~T~d~~ER~~l~~~r~~~a~~G~~~~~~~~~P~~~~~~~~~~ 182 (470)
T TIGR00792 103 FSATGNPIGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGISA 182 (470)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 55431177899999999999846622101362103543257831002120187899999999999999999986066546
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH
Q ss_conf -211111101456788888777788876167886--40221011111123331000000000256777887631001468
Q gi|254780967|r 151 -VALSGGWIGIFVCMGVITTFITLWYYIRFPETL--DPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFV 227 (398)
Q Consensus 151 -~~~~~gWr~~f~~~~~~~~~~~~~~~~~~pet~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (398)
T Consensus 183 ~~~~~~G~~~~~~i~~~~g~~~~~~c~~~tkE~~~~~~~~~~~~~~~~~~~~~~~l~~N~qL~~l~~~~l~~~~a~~i~~ 262 (470)
T TIGR00792 183 GEDDKLGWFMFALILALIGVVLLIICFFGTKERVSVSEIPKKSEKKLSLKKIFKALFKNDQLLILCLAYLFYLLAFNIKN 262 (470)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 88885058999999999999999987167732131033211356778689999998528889999999999999999876
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 887654554315311015889988-6576778899999850015651246887788899999999873257776403799
Q gi|254780967|r 228 NSSQQIYVGIYQLGNLFPIAFAVG-GFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFI 306 (398)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (398)
T Consensus 263 ~~~~YYf~Yvlg~~~lf~~~~~~~~~~~~l~~~~l~P~l~k~~grk~~~~~~~~~~~~g~l~~~~~~~A----~~~~~~~ 338 (470)
T TIGR00792 263 GVQVYYFTYVLGDPELFSILGLIAFIGAGLIGVLLFPRLVKKFGRKRLFLIGILLMVLGLLILFFVGKA----SNLPLIL 338 (470)
T ss_pred HHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_conf 563023457746678999999999999999999878778876125999999999999999999873167----7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHH--HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89989999999999999999----9853--4667------6999999999999999999999999983
Q gi|254780967|r 307 AFFFLASFQFGLINSNFSSI----SMEP--FSHL------AGTASSIFGFINTVISTILGIIIGQSFN 362 (398)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~------~G~a~~l~~~~~~~~~~~~~~~~g~~~~ 362 (398)
T Consensus 339 ~~~~~~~~~~~~~~~~~w~~~vi~~~D~VdYGE~k~G~R~Eg~~~S~~~f~~K~G~A~~g~~~G~~L~ 406 (470)
T TIGR00792 339 VLIIIAGFGQNFVTGLVWALQVIMVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 406 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988776778987888864420232210201485507999999999999988998999999999