HHsearch alignment for GI: 254780967 and conserved domain: TIGR00792

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter; InterPro: IPR001927 It has been shown that integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. This collection of sequences represents the sodium: galactoside symporter family (SGF). Like sugar transport proteins, these integral membrane proteins are predicted to comprise twelve membrane spanning domains. ; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0016020 membrane.
Probab=99.77  E-value=1e-15  Score=103.15  Aligned_cols=334  Identities=17%  Similarity=0.231  Sum_probs=210.1

Q ss_pred             HHHHHHHHCCCHHHHH----HHHHHHHHH---HHHHHHHHHHHHHH------HCCC-HHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999998199988999----999999999---99999999999986------5082-89999999999999998510011
Q gi|254780967|r   25 LPKISDSLHLSNENYG----QHLISFYLI---GYGIAQIFYGPLSD------RFGR-KIVMMFGLVIHIISTFIMVTINS   90 (398)
Q Consensus        25 lp~i~~~l~~s~~~~~----~~~~s~~~~---~~~i~~~~~G~l~D------r~Gr-r~~l~~g~~~~~i~~~~~~~a~~   90 (398)
T Consensus        23 ~~fyTDv~G~~a~~~G~n~~iLiTtlflV~Ri~dAi~DP~~G~~vD~T~~I~rwGKFRPw~L~Ga~p~~~~~vL~F~~~~  102 (470)
T TIGR00792        23 LFFYTDVLGLSAAIVGANKLILITTLFLVARILDAITDPIMGLIVDRTRNITRWGKFRPWLLIGAIPFAIVLVLLFTTPD  102 (470)
T ss_pred             HHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCC
T ss_conf             99886215684311234532678999999999999833467567524458887964330002017899999999982457


Q ss_pred             HH----------HHCCCCCCCCCCCCCCCCCCHHHHHHH-HCCCCCCCCCCCCCCEECCCC-----CCCCCC---CCCC-
Q ss_conf             01----------110022321001111111000123321-000111122122331000111-----111111---1222-
Q gi|254780967|r   91 FT----------GMLCMRLIQGIGGAAPRIITISIIRDI-YDGRDMAKVLSIAMMIFMIMP-----ILAPSI---GQAT-  150 (398)
Q Consensus        91 ~~----------~l~~~r~l~G~g~~~~~~~~~a~i~~~-~~~~~~~~~~~~~~~~~~~g~-----~igp~i---g~~l-  150 (398)
T Consensus       103 ~~~~~n~~~~~v~a~~tYi~~g~~Ys~~niPy~sl~p~~T~d~~ER~~l~~~r~~~a~~G~~~~~~~~~P~~~~~~~~~~  182 (470)
T TIGR00792       103 FSATGNPIGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGISA  182 (470)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             55431177899999999999846622101362103543257831002120187899999999999999999986066546


Q ss_pred             -CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH
Q ss_conf             -211111101456788888777788876167886--40221011111123331000000000256777887631001468
Q gi|254780967|r  151 -VALSGGWIGIFVCMGVITTFITLWYYIRFPETL--DPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFV  227 (398)
Q Consensus       151 -~~~~~gWr~~f~~~~~~~~~~~~~~~~~~pet~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (398)
T Consensus       183 ~~~~~~G~~~~~~i~~~~g~~~~~~c~~~tkE~~~~~~~~~~~~~~~~~~~~~~~l~~N~qL~~l~~~~l~~~~a~~i~~  262 (470)
T TIGR00792       183 GEDDKLGWFMFALILALIGVVLLIICFFGTKERVSVSEIPKKSEKKLSLKKIFKALFKNDQLLILCLAYLFYLLAFNIKN  262 (470)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             88885058999999999999999987167732131033211356778689999998528889999999999999999876


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             887654554315311015889988-6576778899999850015651246887788899999999873257776403799
Q gi|254780967|r  228 NSSQQIYVGIYQLGNLFPIAFAVG-GFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFI  306 (398)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (398)
T Consensus       263 ~~~~YYf~Yvlg~~~lf~~~~~~~~~~~~l~~~~l~P~l~k~~grk~~~~~~~~~~~~g~l~~~~~~~A----~~~~~~~  338 (470)
T TIGR00792       263 GVQVYYFTYVLGDPELFSILGLIAFIGAGLIGVLLFPRLVKKFGRKRLFLIGILLMVLGLLILFFVGKA----SNLPLIL  338 (470)
T ss_pred             HHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_conf             563023457746678999999999999999999878778876125999999999999999999873167----7999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHH--HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89989999999999999999----9853--4667------6999999999999999999999999983
Q gi|254780967|r  307 AFFFLASFQFGLINSNFSSI----SMEP--FSHL------AGTASSIFGFINTVISTILGIIIGQSFN  362 (398)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~------~G~a~~l~~~~~~~~~~~~~~~~g~~~~  362 (398)
T Consensus       339 ~~~~~~~~~~~~~~~~~w~~~vi~~~D~VdYGE~k~G~R~Eg~~~S~~~f~~K~G~A~~g~~~G~~L~  406 (470)
T TIGR00792       339 VLIIIAGFGQNFVTGLVWALQVIMVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  406 (470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999988776778987888864420232210201485507999999999999988998999999999