HHsearch alignment for GI: 254780967 and conserved domain: TIGR00806

>TIGR00806 rfc reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy , such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules .; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane.
Probab=96.96  E-value=0.016  Score=30.41  Aligned_cols=326  Identities=14%  Similarity=0.134  Sum_probs=178.5

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCC
Q ss_conf             99999819998899999999999999999999999986508289999999999999998510011011100223210011
Q gi|254780967|r   26 PKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGG  105 (398)
Q Consensus        26 p~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~~~~~l~~~r~l~G~g~  105 (398)
T Consensus        50 ~Y~~~~~n~~~~~~~~~i~P~l~YS~L~~LvP~FLLTd~l~YkP~L~l~~lSf~~~Wlll~lG~SV~~~QllE~FY~~~~  129 (542)
T TIGR00806        50 PYLLTVLNFTEETVTNEIIPVLPYSYLAVLVPVFLLTDYLRYKPVLVLQALSFVAVWLLLLLGKSVVHMQLLEVFYSVTM  129 (542)
T ss_pred             HHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             24554553106764045211015889999999999866773126999988999999999996058999999999988999


Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---HHHHHHHHHHCCCC
Q ss_conf             111110001233210001111221223310001111111111222211111101456788888---77778887616788
Q gi|254780967|r  106 AAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVIT---TFITLWYYIRFPET  182 (398)
Q Consensus       106 ~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~---~~~~~~~~~~~pet  182 (398)
T Consensus       130 A~~-IAY~~YIf~~V~~~~Y~~~~~y~RAA~L~G~F~~~~L~Q~L~~--l~~~s~-~~LN~isL~~~~f~v~Lal~L~~~  205 (542)
T TIGR00806       130 AAR-IAYSSYIFSLVRPSRYKRAAAYSRAAVLLGVFLSSVLGQLLVT--LNWVSY-STLNIISLVFLTFSVVLALFLKGR  205 (542)
T ss_pred             HHH-HHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHH-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             998-8888765300251333346778899999999999999999752--223567-786689999999999999870787


Q ss_pred             CCHH------------------------HH--CCCCCCCC-------------CCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             6402------------------------21--01111112-------------333100000000025677788763100
Q gi|254780967|r  183 LDPR------------------------DV--RPLNLYAI-------------LHSFSLIFKHRASTLYNIANSLTMGAI  223 (398)
Q Consensus       183 ~~~~------------------------~~--~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (398)
T Consensus       206 p~~~~f~~~~~~~~~~~~~~~L~~~~~~~~rpe~~k~~~~L~~~C~~~flv~l~~~L~~~~r~P~~~~Ws~W~~~~S~~y  285 (542)
T TIGR00806       206 PKRSLFFNRLEDKRCEALPCELEQMVPGPGRPEPGKLEDYLRVACRDSFLVRLLSELVAILRNPLLLLWSLWWVLNSAGY  285 (542)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             32678742555432000155587615777887315799998656557899999999999861886215789999987789


Q ss_pred             HHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             1468887654554315311----015889988657677889999985001565124688778889999999987325777
Q gi|254780967|r  224 LGFVNSSQQIYVGIYQLGN----LFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHP  299 (398)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (398)
T Consensus       286 Y~i~~Y~~~LW~~~~~~~n~~~~YNG~~~A~~~LLg~~~~~~~~~~~~~W~~W~~ll--ia~~~~~QAgL~F~m~~~~~~  363 (542)
T TIGR00806       286 YLIVYYVHVLWGTLDESLNKARVYNGAVDAASTLLGAITSLIAGFLNIRWARWSKLL--IAVVSAIQAGLVFLMSQSHYV  363 (542)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHH--HHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999999853114012100003776789888876788754123302133463588--999999999999999841343


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             64037998998999999999999999-99853466769999999999999999999999
Q gi|254780967|r  300 IHLLIFIAFFFLASFQFGLINSNFSS-ISMEPFSHLAGTASSIFGFINTVISTILGIII  357 (398)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~a~~l~~~~~~~~~~~~~~~~  357 (398)
T Consensus       364 ~~I~v~Y~~yvlfR~~YQ~~~~IA~~~~A~sL~~~L~aL~FGiNTF~A~~l~~~~T~vV  422 (542)
T TIGR00806       364 SEIWVLYVTYVLFRGIYQLLVPIATFQIASSLSKELCALVFGINTFLALALKTIITLVV  422 (542)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_conf             14456888999998899988789989998866477899997699999999987644001