HHsearch alignment for GI: 254780967 and conserved domain: TIGR00806
>TIGR00806 rfc reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy , such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules .; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane.
Probab=96.96 E-value=0.016 Score=30.41 Aligned_cols=326 Identities=14% Similarity=0.134 Sum_probs=178.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCC
Q ss_conf 99999819998899999999999999999999999986508289999999999999998510011011100223210011
Q gi|254780967|r 26 PKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGG 105 (398)
Q Consensus 26 p~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~~~~~l~~~r~l~G~g~ 105 (398)
T Consensus 50 ~Y~~~~~n~~~~~~~~~i~P~l~YS~L~~LvP~FLLTd~l~YkP~L~l~~lSf~~~Wlll~lG~SV~~~QllE~FY~~~~ 129 (542)
T TIGR00806 50 PYLLTVLNFTEETVTNEIIPVLPYSYLAVLVPVFLLTDYLRYKPVLVLQALSFVAVWLLLLLGKSVVHMQLLEVFYSVTM 129 (542)
T ss_pred HHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 24554553106764045211015889999999999866773126999988999999999996058999999999988999
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---HHHHHHHHHHCCCC
Q ss_conf 111110001233210001111221223310001111111111222211111101456788888---77778887616788
Q gi|254780967|r 106 AAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVIT---TFITLWYYIRFPET 182 (398)
Q Consensus 106 ~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~---~~~~~~~~~~~pet 182 (398)
T Consensus 130 A~~-IAY~~YIf~~V~~~~Y~~~~~y~RAA~L~G~F~~~~L~Q~L~~--l~~~s~-~~LN~isL~~~~f~v~Lal~L~~~ 205 (542)
T TIGR00806 130 AAR-IAYSSYIFSLVRPSRYKRAAAYSRAAVLLGVFLSSVLGQLLVT--LNWVSY-STLNIISLVFLTFSVVLALFLKGR 205 (542)
T ss_pred HHH-HHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHH-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 998-8888765300251333346778899999999999999999752--223567-786689999999999999870787
Q ss_pred CCHH------------------------HH--CCCCCCCC-------------CCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 6402------------------------21--01111112-------------333100000000025677788763100
Q gi|254780967|r 183 LDPR------------------------DV--RPLNLYAI-------------LHSFSLIFKHRASTLYNIANSLTMGAI 223 (398)
Q Consensus 183 ~~~~------------------------~~--~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (398)
T Consensus 206 p~~~~f~~~~~~~~~~~~~~~L~~~~~~~~rpe~~k~~~~L~~~C~~~flv~l~~~L~~~~r~P~~~~Ws~W~~~~S~~y 285 (542)
T TIGR00806 206 PKRSLFFNRLEDKRCEALPCELEQMVPGPGRPEPGKLEDYLRVACRDSFLVRLLSELVAILRNPLLLLWSLWWVLNSAGY 285 (542)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 32678742555432000155587615777887315799998656557899999999999861886215789999987789
Q ss_pred HHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 1468887654554315311----015889988657677889999985001565124688778889999999987325777
Q gi|254780967|r 224 LGFVNSSQQIYVGIYQLGN----LFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHP 299 (398)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (398)
T Consensus 286 Y~i~~Y~~~LW~~~~~~~n~~~~YNG~~~A~~~LLg~~~~~~~~~~~~~W~~W~~ll--ia~~~~~QAgL~F~m~~~~~~ 363 (542)
T TIGR00806 286 YLIVYYVHVLWGTLDESLNKARVYNGAVDAASTLLGAITSLIAGFLNIRWARWSKLL--IAVVSAIQAGLVFLMSQSHYV 363 (542)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHH--HHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999853114012100003776789888876788754123302133463588--999999999999999841343
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64037998998999999999999999-99853466769999999999999999999999
Q gi|254780967|r 300 IHLLIFIAFFFLASFQFGLINSNFSS-ISMEPFSHLAGTASSIFGFINTVISTILGIII 357 (398)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~a~~l~~~~~~~~~~~~~~~~ 357 (398)
T Consensus 364 ~~I~v~Y~~yvlfR~~YQ~~~~IA~~~~A~sL~~~L~aL~FGiNTF~A~~l~~~~T~vV 422 (542)
T TIGR00806 364 SEIWVLYVTYVLFRGIYQLLVPIATFQIASSLSKELCALVFGINTFLALALKTIITLVV 422 (542)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_conf 14456888999998899988789989998866477899997699999999987644001