HHsearch alignment for GI: 254780967 and conserved domain: TIGR00880
>TIGR00880 2_A_01_02 Multidrug resistance protein; InterPro: IPR004734 Multidrug resistance proteins are molecular pumps that participate in a low energy shock adaptive response in some bacteria. They mediate cellular resistance to toxicants such as cycloheximide (CYH), 4-nitroquinoline N-oxide (4-NQO), cadmium, and hydrogen peroxide in yeast .; GO: 0015238 drug transporter activity, 0015893 drug transport, 0016021 integral to membrane.
Probab=99.95 E-value=4.1e-29 Score=176.99 Aligned_cols=137 Identities=29% Similarity=0.551 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHHCC---CCHHHHCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 999999999999999986----5082899999999999999985100---110111002232100111111100012332
Q gi|254780967|r 46 FYLIGYGIAQIFYGPLSD----RFGRKIVMMFGLVIHIISTFIMVTI---NSFTGMLCMRLIQGIGGAAPRIITISIIRD 118 (398)
Q Consensus 46 ~~~~~~~i~~~~~G~l~D----r~Grr~~l~~g~~~~~i~~~~~~~a---~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~ 118 (398)
T Consensus 2 ~~~~~yAl~q~~~~P~~~~l~~r~GRk~~~~~g~~~f~~~~~~~al~nPh~~~~~L~i~R~~~G~~~~~~~~~g~a~~aD 81 (148)
T TIGR00880 2 LLVAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSQALFALSNPHSNITVLIISRFLQGFGAAAALVAGAALIAD 81 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999998842162899999999999999998844872379999999999999888999989888877
Q ss_pred HHCCC-CCCCCCCCCCCEECCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 10001-11122122331000111111111122221--111110145678888877778887616788
Q gi|254780967|r 119 IYDGR-DMAKVLSIAMMIFMIMPILAPSIGQATVA--LSGGWIGIFVCMGVITTFITLWYYIRFPET 182 (398)
Q Consensus 119 ~~~~~-~~~~~~~~~~~~~~~g~~igp~ig~~l~~--~~~gWr~~f~~~~~~~~~~~~~~~~~~pet 182 (398)
T Consensus 82 ~~~~~~~~~~a~g~~~~~~~~g~~lgP~~G~~~~~~~~~~~wr~~F~~~~~~~~~~~~~~~~~~~eT 148 (148)
T TIGR00880 82 IYPPEEERSVALGLMSAGIALGPILGPPLGGVLANVKQALGWRAPFLILAALALAAFILLAFLLPET 148 (148)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 4264047889999999999999999999989998755401765899999999999999998860689