HHsearch alignment for GI: 254780967 and conserved domain: TIGR00880
>TIGR00880 2_A_01_02 Multidrug resistance protein; InterPro: IPR004734 Multidrug resistance proteins are molecular pumps that participate in a low energy shock adaptive response in some bacteria. They mediate cellular resistance to toxicants such as cycloheximide (CYH), 4-nitroquinoline N-oxide (4-NQO), cadmium, and hydrogen peroxide in yeast .; GO: 0015238 drug transporter activity, 0015893 drug transport, 0016021 integral to membrane.
Probab=98.63 E-value=9.5e-06 Score=48.21 Aligned_cols=112 Identities=18% Similarity=0.227 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88998865767788999998500156512468877888999999998732577764037998998999999999999999
Q gi|254780967|r 246 IAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSS 325 (398)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (398)
T Consensus 2 ~~~~~yAl~q~~~~P~~~~l~~r~GRk~~~~~g~~~f~~~~~~~al---~nP-h~~~~~L~i~R~~~G~~~~~~~~~g~a 77 (148)
T TIGR00880 2 LLVAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSQALFAL---SNP-HSNITVLIISRFLQGFGAAAALVAGAA 77 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7999999999999999999884216289999999999999999884---487-237999999999999988899998988
Q ss_pred HHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9985346-6-76999999999999999999999999983
Q gi|254780967|r 326 ISMEPFS-H-LAGTASSIFGFINTVISTILGIIIGQSFN 362 (398)
Q Consensus 326 ~~~~~~~-~-~~G~a~~l~~~~~~~~~~~~~~~~g~~~~ 362 (398)
T Consensus 78 ~~aD~~~~~~~~~~a~g~~~~~-~~~g~~lgP~~G~~~~ 115 (148)
T TIGR00880 78 LIADIYPPEEERSVALGLMSAG-IALGPILGPPLGGVLA 115 (148)
T ss_pred HHHHHCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 8877426404788999999999-9999999999989998