HHsearch alignment for GI: 254780967 and conserved domain: TIGR00882
>TIGR00882 2A0105 oligosaccharide:H+ symporter; InterPro: IPR000576 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) . The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli .; GO: 0005403 hydrogen:sugar symporter activity, 0006810 transport, 0016020 membrane.
Probab=99.68 E-value=8.3e-14 Score=92.62 Aligned_cols=351 Identities=14% Similarity=0.147 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHHHHHC
Q ss_conf 9988657669999999-99981999889999999999999999999999998650828999999999999---9998510
Q gi|254780967|r 12 AINSLGIDIILPCLPK-ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHII---STFIMVT 87 (398)
Q Consensus 12 ~~~~~~~~~~~p~lp~-i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i---~~~~~~~ 87 (398)
T Consensus 12 FlyFfim~~~fpf~piWL~~~~gl~kt~tG-i~fs~~sl~si~Fqp~~G~~sDkLGLkK~LlW~is~lLvlfaPFfiyVf 90 (397)
T TIGR00882 12 FLYFFIMSAYFPFFPIWLKDVNGLTKTETG-IVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISLLLVLFAPFFIYVF 90 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998853347788422547776357-7888899999987666400201235506899999999998615998986
Q ss_pred CC----CHHH-HCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 01----1011-100223210011111110001233210001111221223310001111111111222211111101456
Q gi|254780967|r 88 IN----SFTG-MLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFV 162 (398)
Q Consensus 88 a~----~~~~-l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~ 162 (398)
T Consensus 91 ~PLL~~Ni~~G~l~Gg~y~G~~f~AG~Ga~eayiEkvsR~~~--FEYG~aR~fGc~GwAlcA~~~GIlF~i--~p~~~FW 166 (397)
T TIGR00882 91 APLLQSNILVGALVGGLYLGFVFSAGAGAIEAYIEKVSRNSN--FEYGKARMFGCVGWALCASIAGILFSI--DPSIVFW 166 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC--CCCCEEEEEEECHHHHHHHHCCEEEEC--CCCHHHH
T ss_conf 779998999999986999877873257346888978752479--840017888721378776530300300--6641457
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHH----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHH
Q ss_conf 78888877778887616788640221----01111112333100000000025677788763100146888-76545543
Q gi|254780967|r 163 CMGVITTFITLWYYIRFPETLDPRDV----RPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNS-SQQIYVGI 237 (398)
Q Consensus 163 ~~~~~~~~~~~~~~~~~pet~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 237 (398)
T Consensus 167 l~S~~a~~l~~ll~~~k~~~~~~A~V~~a~gAn~~~~~~~~~~~lFr~r~~W~f~lyvvGv~~~YdvFDQQlFa~Ff~~f 246 (397)
T TIGR00882 167 LGSGFALILMLLLMVAKPKSSDSAEVANALGANASAISLKDALELFRQRRLWVFVLYVVGVACVYDVFDQQLFAVFFKGF 246 (397)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 88999999999997616998726899998733800016789999717998657888666100023101210037786554
Q ss_pred CCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 1531----101588998865767788999998500156512468877888999999998732577764037998998999
Q gi|254780967|r 238 YQLG----NLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLAS 313 (398)
Q Consensus 238 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (398)
T Consensus 247 F~~~~~Gtr~fGy~tt~ge~lnA~iMf~~P~iiNRiG~KNaLLiag~IM~~RI~gssf~~-------~~~ev~~lK~LH~ 319 (397)
T TIGR00882 247 FATPQQGTRVFGYVTTAGELLNALIMFCAPLIINRIGAKNALLIAGLIMAVRILGSSFAT-------TAVEVVILKMLHA 319 (397)
T ss_pred HCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_conf 057677627665301288999999998703776166715899999999999999888776-------6999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998534667-699999999--99999999999999999831179999999999
Q gi|254780967|r 314 FQFGLINSNFSSISMEPFSHL-AGTASSIFG--FINTVISTILGIIIGQSFNGTTYPITIGFFGI 375 (398)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~-~G~a~~l~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 375 (398)
T Consensus 320 ~EvPfllvg~FKYi~~~F~~rLSaTiy-LiGF~~~kqla~i~LS~~~G~lyd~~Gfq~~yl~lg~ 383 (397)
T TIGR00882 320 LEVPFLLVGAFKYITSVFDKRLSATIY-LIGFQFAKQLAAILLSTFAGNLYDRIGFQTAYLVLGC 383 (397)
T ss_pred HHHHHHHHHHHHHEECCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 762689864554111111552256788-9999998888899999877767630244799999999