HHsearch alignment for GI: 254780967 and conserved domain: TIGR00882

>TIGR00882 2A0105 oligosaccharide:H+ symporter; InterPro: IPR000576 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) . The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli .; GO: 0005403 hydrogen:sugar symporter activity, 0006810 transport, 0016020 membrane.
Probab=99.68  E-value=8.3e-14  Score=92.62  Aligned_cols=351  Identities=14%  Similarity=0.147  Sum_probs=204.3

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HHHHHHC
Q ss_conf             9988657669999999-99981999889999999999999999999999998650828999999999999---9998510
Q gi|254780967|r   12 AINSLGIDIILPCLPK-ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHII---STFIMVT   87 (398)
Q Consensus        12 ~~~~~~~~~~~p~lp~-i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i---~~~~~~~   87 (398)
T Consensus        12 FlyFfim~~~fpf~piWL~~~~gl~kt~tG-i~fs~~sl~si~Fqp~~G~~sDkLGLkK~LlW~is~lLvlfaPFfiyVf   90 (397)
T TIGR00882        12 FLYFFIMSAYFPFFPIWLKDVNGLTKTETG-IVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISLLLVLFAPFFIYVF   90 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999998853347788422547776357-7888899999987666400201235506899999999998615998986


Q ss_pred             CC----CHHH-HCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             01----1011-100223210011111110001233210001111221223310001111111111222211111101456
Q gi|254780967|r   88 IN----SFTG-MLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFV  162 (398)
Q Consensus        88 a~----~~~~-l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~  162 (398)
T Consensus        91 ~PLL~~Ni~~G~l~Gg~y~G~~f~AG~Ga~eayiEkvsR~~~--FEYG~aR~fGc~GwAlcA~~~GIlF~i--~p~~~FW  166 (397)
T TIGR00882        91 APLLQSNILVGALVGGLYLGFVFSAGAGAIEAYIEKVSRNSN--FEYGKARMFGCVGWALCASIAGILFSI--DPSIVFW  166 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC--CCCCEEEEEEECHHHHHHHHCCEEEEC--CCCHHHH
T ss_conf             779998999999986999877873257346888978752479--840017888721378776530300300--6641457


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHH----CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHH
Q ss_conf             78888877778887616788640221----01111112333100000000025677788763100146888-76545543
Q gi|254780967|r  163 CMGVITTFITLWYYIRFPETLDPRDV----RPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNS-SQQIYVGI  237 (398)
Q Consensus       163 ~~~~~~~~~~~~~~~~~pet~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  237 (398)
T Consensus       167 l~S~~a~~l~~ll~~~k~~~~~~A~V~~a~gAn~~~~~~~~~~~lFr~r~~W~f~lyvvGv~~~YdvFDQQlFa~Ff~~f  246 (397)
T TIGR00882       167 LGSGFALILMLLLMVAKPKSSDSAEVANALGANASAISLKDALELFRQRRLWVFVLYVVGVACVYDVFDQQLFAVFFKGF  246 (397)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHH
T ss_conf             88999999999997616998726899998733800016789999717998657888666100023101210037786554


Q ss_pred             CCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             1531----101588998865767788999998500156512468877888999999998732577764037998998999
Q gi|254780967|r  238 YQLG----NLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLAS  313 (398)
Q Consensus       238 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (398)
T Consensus       247 F~~~~~Gtr~fGy~tt~ge~lnA~iMf~~P~iiNRiG~KNaLLiag~IM~~RI~gssf~~-------~~~ev~~lK~LH~  319 (397)
T TIGR00882       247 FATPQQGTRVFGYVTTAGELLNALIMFCAPLIINRIGAKNALLIAGLIMAVRILGSSFAT-------TAVEVVILKMLHA  319 (397)
T ss_pred             HCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_conf             057677627665301288999999998703776166715899999999999999888776-------6999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999998534667-699999999--99999999999999999831179999999999
Q gi|254780967|r  314 FQFGLINSNFSSISMEPFSHL-AGTASSIFG--FINTVISTILGIIIGQSFNGTTYPITIGFFGI  375 (398)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~-~G~a~~l~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  375 (398)
T Consensus       320 ~EvPfllvg~FKYi~~~F~~rLSaTiy-LiGF~~~kqla~i~LS~~~G~lyd~~Gfq~~yl~lg~  383 (397)
T TIGR00882       320 LEVPFLLVGAFKYITSVFDKRLSATIY-LIGFQFAKQLAAILLSTFAGNLYDRIGFQTAYLVLGC  383 (397)
T ss_pred             HHHHHHHHHHHHHEECCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             762689864554111111552256788-9999998888899999877767630244799999999