HHsearch alignment for GI: 254780967 and conserved domain: TIGR00882
>TIGR00882 2A0105 oligosaccharide:H+ symporter; InterPro: IPR000576 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) . The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli .; GO: 0005403 hydrogen:sugar symporter activity, 0006810 transport, 0016020 membrane.
Probab=97.88 E-value=6.3e-05 Score=43.68 Aligned_cols=112 Identities=7% Similarity=0.099 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 00025677788763100146888765455431531-10158899886576778899999850015651246887788899
Q gi|254780967|r 207 RASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLG-NLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMI 285 (398)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~ 285 (398)
T Consensus 2 ~~f~~f~~ffFlyFfim~~~fpf~piWL~~~~gl~kt~tGi~fs~~sl~si~Fqp~~G~~sDkLGLkK~LlW~is~lLvl 81 (397)
T TIGR00882 2 TNFWIFGLFFFLYFFIMSAYFPFFPIWLKDVNGLTKTETGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISLLLVL 81 (397)
T ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 75120388999999999988533477884225477763577888899999987666400201235506899999999998
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999873257776403799899899999999999
Q gi|254780967|r 286 TGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINS 321 (398)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (398)
T Consensus 82 faPFfiyVf~PLL~~N---i~~G~l~Gg~y~G~~f~ 114 (397)
T TIGR00882 82 FAPFFIYVFAPLLQSN---ILVGALVGGLYLGFVFS 114 (397)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_conf 6159989867799989---99999986999877873