HHsearch alignment for GI: 254780967 and conserved domain: TIGR00882

>TIGR00882 2A0105 oligosaccharide:H+ symporter; InterPro: IPR000576 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) . The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli .; GO: 0005403 hydrogen:sugar symporter activity, 0006810 transport, 0016020 membrane.
Probab=97.88  E-value=6.3e-05  Score=43.68  Aligned_cols=112  Identities=7%  Similarity=0.099  Sum_probs=79.4

Q ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             00025677788763100146888765455431531-10158899886576778899999850015651246887788899
Q gi|254780967|r  207 RASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLG-NLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMI  285 (398)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~  285 (398)
T Consensus         2 ~~f~~f~~ffFlyFfim~~~fpf~piWL~~~~gl~kt~tGi~fs~~sl~si~Fqp~~G~~sDkLGLkK~LlW~is~lLvl   81 (397)
T TIGR00882         2 TNFWIFGLFFFLYFFIMSAYFPFFPIWLKDVNGLTKTETGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISLLLVL   81 (397)
T ss_pred             CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             75120388999999999988533477884225477763577888899999987666400201235506899999999998


Q ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999873257776403799899899999999999
Q gi|254780967|r  286 TGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINS  321 (398)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (398)
T Consensus        82 faPFfiyVf~PLL~~N---i~~G~l~Gg~y~G~~f~  114 (397)
T TIGR00882        82 FAPFFIYVFAPLLQSN---ILVGALVGGLYLGFVFS  114 (397)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_conf             6159989867799989---99999986999877873