HHsearch alignment for GI: 254780967 and conserved domain: TIGR00885
>TIGR00885 fucP L-fucose:H+ symporter permease; InterPro: IPR005275 This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by at least four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. .
Probab=99.84 E-value=5.9e-19 Score=120.99 Aligned_cols=350 Identities=15% Similarity=0.170 Sum_probs=241.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 93899999999998865766999999999981999889999999999999999999999998650828999999999999
Q gi|254780967|r 1 MEFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHII 80 (398)
Q Consensus 1 ~~~i~~l~~~~~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i 80 (398)
T Consensus 3 iPF~LitSl-FaLWg~ANditnpmv~~Fq~~f~~~a~~aa-LvQ~AFYgGYf~~aiPAa~f~~k~SYKAGillGL~LYA~ 80 (427)
T TIGR00885 3 IPFVLITSL-FALWGFANDITNPMVKAFQKVFELTAFEAA-LVQVAFYGGYFIMAIPAALFIKKLSYKAGILLGLALYAL 80 (427)
T ss_pred CHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 316999989-999988750021579999988406554202-666667620123565589999873468889998999999
Q ss_pred HHHHHH---CCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC--
Q ss_conf 999851---001101110022321001111111000123321000111122122331000111111111122221111--
Q gi|254780967|r 81 STFIMV---TINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSG-- 155 (398)
Q Consensus 81 ~~~~~~---~a~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~-- 155 (398)
T Consensus 81 GAfLFwPAa~~~~y~~FLv~lfIlt~GL~fLET~aNPyil~mG~e~tatrRLNlAQsFNp~Gsi~g~~va~~lil~nl~~ 160 (427)
T TIGR00885 81 GAFLFWPAAEIEEYTLFLVGLFILTAGLGFLETAANPYILVMGDEETATRRLNLAQSFNPLGSIIGMVVAQQLILSNLES 160 (427)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88863137752351279999999996266664242863761278884210222563021578999999998988632887
Q ss_pred ----------------------------CCCHHHHHHHHHHHHHHHHH-HHHCCCCCCHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf ----------------------------11014567888887777888-7616788640221011111123331000000
Q gi|254780967|r 156 ----------------------------GWIGIFVCMGVITTFITLWY-YIRFPETLDPRDVRPLNLYAILHSFSLIFKH 206 (398)
Q Consensus 156 ----------------------------gWr~~f~~~~~~~~~~~~~~-~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~ 206 (398)
T Consensus 161 ~~~D~~Gnlif~~ls~~e~~aik~sdla~~~~PY~iig~vvlav~llI~l~K~Pa~-qsDn~~~a~qisF~~~lsRla~~ 239 (427)
T TIGR00885 161 QSQDVLGNLIFDKLSEEELSAIKESDLASVRTPYLIIGLVVLAVLLLIRLTKMPAL-QSDNHEDAKQISFSASLSRLARK 239 (427)
T ss_pred CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 66425787898842978888864655766612389999999999999854137742-25772003465505899999864
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----HHCCCCCC----HHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 00025677788763100146888765455-----43153110----15889-9886576778899999850015651246
Q gi|254780967|r 207 RASTLYNIANSLTMGAILGFVNSSQQIYV-----GIYQLGNL----FPIAF-AVGGFAMSIASFINSRLVEKFGIRRVSH 276 (398)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~l~~r~~~~~~~~ 276 (398)
T Consensus 240 ~~yRegViAQffYVGvQi~CWtfii~Ya~rl~~~~~~G~~~~saevlsqqy~i~aMviF~isRFi~T~l~~yl~a~k~L~ 319 (427)
T TIGR00885 240 RKYREGVIAQFFYVGVQIMCWTFIIQYAVRLIFGKTAGFAAKSAEVLSQQYNIVAMVIFIISRFIGTFLLKYLAAEKLLM 319 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf 24689999999998789999999999765614784320013457888753456678777667889999998628658999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 88778889999999987325777640379989989999999999999999985346676--9999999999999999999
Q gi|254780967|r 277 YSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFSHLA--GTASSIFGFINTVISTILG 354 (398)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--G~a~~l~~~~~~~~~~~~~ 354 (398)
T Consensus 320 ~~----Ai~g~~~~Lg~iF~~g----~~GLycL~l~SafMsl~fPTIygialkglg~d~k~Gaa-glv--MaI~GG~~~p 388 (427)
T TIGR00885 320 LY----AIIGMLLILGSIFLDG----VVGLYCLVLVSAFMSLMFPTIYGIALKGLGEDTKYGAA-GLV--MAIIGGGILP 388 (427)
T ss_pred HH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHH-HHH--HHHHHHHHCC
T ss_conf 99----9999999999999802----48999999997321032246899985146400001057-899--9886103201
Q ss_pred HHHHHHHHHH
Q ss_conf 9999998311
Q gi|254780967|r 355 IIIGQSFNGT 364 (398)
Q Consensus 355 ~~~g~~~~~~ 364 (398)
T Consensus 389 Pl~g~iiD~~ 398 (427)
T TIGR00885 389 PLQGFIIDQK 398 (427)
T ss_pred CHHHEEECHH
T ss_conf 0140422337