HHsearch alignment for GI: 254780967 and conserved domain: TIGR00885

>TIGR00885 fucP L-fucose:H+ symporter permease; InterPro: IPR005275 This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by at least four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. .
Probab=99.84  E-value=5.9e-19  Score=120.99  Aligned_cols=350  Identities=15%  Similarity=0.170  Sum_probs=241.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             93899999999998865766999999999981999889999999999999999999999998650828999999999999
Q gi|254780967|r    1 MEFVIVIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHII   80 (398)
Q Consensus         1 ~~~i~~l~~~~~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i   80 (398)
T Consensus         3 iPF~LitSl-FaLWg~ANditnpmv~~Fq~~f~~~a~~aa-LvQ~AFYgGYf~~aiPAa~f~~k~SYKAGillGL~LYA~   80 (427)
T TIGR00885         3 IPFVLITSL-FALWGFANDITNPMVKAFQKVFELTAFEAA-LVQVAFYGGYFIMAIPAALFIKKLSYKAGILLGLALYAL   80 (427)
T ss_pred             CHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             316999989-999988750021579999988406554202-666667620123565589999873468889998999999


Q ss_pred             HHHHHH---CCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC--
Q ss_conf             999851---001101110022321001111111000123321000111122122331000111111111122221111--
Q gi|254780967|r   81 STFIMV---TINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSG--  155 (398)
Q Consensus        81 ~~~~~~---~a~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~--  155 (398)
T Consensus        81 GAfLFwPAa~~~~y~~FLv~lfIlt~GL~fLET~aNPyil~mG~e~tatrRLNlAQsFNp~Gsi~g~~va~~lil~nl~~  160 (427)
T TIGR00885        81 GAFLFWPAAEIEEYTLFLVGLFILTAGLGFLETAANPYILVMGDEETATRRLNLAQSFNPLGSIIGMVVAQQLILSNLES  160 (427)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             88863137752351279999999996266664242863761278884210222563021578999999998988632887


Q ss_pred             ----------------------------CCCHHHHHHHHHHHHHHHHH-HHHCCCCCCHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             ----------------------------11014567888887777888-7616788640221011111123331000000
Q gi|254780967|r  156 ----------------------------GWIGIFVCMGVITTFITLWY-YIRFPETLDPRDVRPLNLYAILHSFSLIFKH  206 (398)
Q Consensus       156 ----------------------------gWr~~f~~~~~~~~~~~~~~-~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~  206 (398)
T Consensus       161 ~~~D~~Gnlif~~ls~~e~~aik~sdla~~~~PY~iig~vvlav~llI~l~K~Pa~-qsDn~~~a~qisF~~~lsRla~~  239 (427)
T TIGR00885       161 QSQDVLGNLIFDKLSEEELSAIKESDLASVRTPYLIIGLVVLAVLLLIRLTKMPAL-QSDNHEDAKQISFSASLSRLARK  239 (427)
T ss_pred             CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             66425787898842978888864655766612389999999999999854137742-25772003465505899999864


Q ss_pred             CHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----HHCCCCCC----HHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             00025677788763100146888765455-----43153110----15889-9886576778899999850015651246
Q gi|254780967|r  207 RASTLYNIANSLTMGAILGFVNSSQQIYV-----GIYQLGNL----FPIAF-AVGGFAMSIASFINSRLVEKFGIRRVSH  276 (398)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~l~~r~~~~~~~~  276 (398)
T Consensus       240 ~~yRegViAQffYVGvQi~CWtfii~Ya~rl~~~~~~G~~~~saevlsqqy~i~aMviF~isRFi~T~l~~yl~a~k~L~  319 (427)
T TIGR00885       240 RKYREGVIAQFFYVGVQIMCWTFIIQYAVRLIFGKTAGFAAKSAEVLSQQYNIVAMVIFIISRFIGTFLLKYLAAEKLLM  319 (427)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf             24689999999998789999999999765614784320013457888753456678777667889999998628658999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_conf             88778889999999987325777640379989989999999999999999985346676--9999999999999999999
Q gi|254780967|r  277 YSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFSHLA--GTASSIFGFINTVISTILG  354 (398)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--G~a~~l~~~~~~~~~~~~~  354 (398)
T Consensus       320 ~~----Ai~g~~~~Lg~iF~~g----~~GLycL~l~SafMsl~fPTIygialkglg~d~k~Gaa-glv--MaI~GG~~~p  388 (427)
T TIGR00885       320 LY----AIIGMLLILGSIFLDG----VVGLYCLVLVSAFMSLMFPTIYGIALKGLGEDTKYGAA-GLV--MAIIGGGILP  388 (427)
T ss_pred             HH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHH-HHH--HHHHHHHHCC
T ss_conf             99----9999999999999802----48999999997321032246899985146400001057-899--9886103201


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999998311
Q gi|254780967|r  355 IIIGQSFNGT  364 (398)
Q Consensus       355 ~~~g~~~~~~  364 (398)
T Consensus       389 Pl~g~iiD~~  398 (427)
T TIGR00885       389 PLQGFIIDQK  398 (427)
T ss_pred             CHHHEEECHH
T ss_conf             0140422337