HHsearch alignment for GI: 254780967 and conserved domain: TIGR00889

>TIGR00889 2A0110 nucleoside transporter; InterPro: IPR004740 This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease (NupG) and xanthosine permease (XapB) from Escherichia coli.; GO: 0005337 nucleoside transmembrane transporter activity, 0015858 nucleoside transport, 0016021 integral to membrane.
Probab=99.54  E-value=1.9e-12  Score=85.14  Aligned_cols=384  Identities=14%  Similarity=0.215  Sum_probs=208.8

Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH
Q ss_conf             99999999988-65766999999999981999889999999999999999999999998650-82899999999999999
Q gi|254780967|r    5 IVIAMLMAINS-LGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRF-GRKIVMMFGLVIHIIST   82 (398)
Q Consensus         5 ~~l~~~~~~~~-~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~-Grr~~l~~g~~~~~i~~   82 (398)
T Consensus         5 ~~L~~msFl~~fiWGsWlvtLg~y~~~tl~F~ga~iG-~vYss~gIAAi~~P~l~GiiaDkwlsA~~vya~~~~~gA~~l   83 (435)
T TIGR00889         5 LKLKVMSFLQYFIWGSWLVTLGSYLSKTLKFSGAEIG-AVYSSTGIAAILMPILLGIIADKWLSAQKVYAVCHLVGALLL   83 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4567999999998766898778998661344554203-778877899997278999884156519999999999999999


Q ss_pred             HHHHCCCCHHHHCCCCCCCCCC----CCCCCCCCHHHHH----HHHCCCCCCCCCCC---CCCEECCCCCCCCCCCCCCC
Q ss_conf             9851001101110022321001----1111110001233----21000111122122---33100011111111112222
Q gi|254780967|r   83 FIMVTINSFTGMLCMRLIQGIG----GAAPRIITISIIR----DIYDGRDMAKVLSI---AMMIFMIMPILAPSIGQATV  151 (398)
Q Consensus        83 ~~~~~a~~~~~l~~~r~l~G~g----~~~~~~~~~a~i~----~~~~~~~~~~~~~~---~~~~~~~g~~igp~ig~~l~  151 (398)
T Consensus        84 f~AAq~Ttp~~~F~v~L~ns~ayMPTiaL~Nsisy~~l~~AGlD~~~dFPpIRv~GTiGfI~am~avs--llPqiLGY-a  160 (435)
T TIGR00889        84 FFAAQVTTPAGMFLVLLVNSLAYMPTIALTNSISYANLPNAGLDVVTDFPPIRVMGTIGFIVAMWAVS--LLPQILGY-A  160 (435)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHH--HHHHHHHC-C
T ss_conf             88515688867899999999775147888999999855424885413788706850278999999997--52566301-4


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHH-
Q ss_conf             1111110145678888877778887616788640221011111123-33100000000025677788763100146888-
Q gi|254780967|r  152 ALSGGWIGIFVCMGVITTFITLWYYIRFPETLDPRDVRPLNLYAIL-HSFSLIFKHRASTLYNIANSLTMGAILGFVNS-  229 (398)
Q Consensus       152 ~~~~gWr~~f~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  229 (398)
T Consensus       161 ~~els-~~qLyI~ag~SalL~~fa-l~LP~iPVak~~a~~s~~~~LGLDAf~Lfknkr~~iFF~f-s~llga~L~i~n~F  237 (435)
T TIGR00889       161 DLELS-NLQLYITAGSSALLGVFA-LTLPDIPVAKKKAKMSLKVLLGLDAFILFKNKRMAIFFLF-SMLLGAELQITNIF  237 (435)
T ss_pred             CCCCC-CHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHC
T ss_conf             77713-037899999999999999-8478989851003411788876789887508854678999-99975688876530


Q ss_pred             HHHHHHHHCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCC
Q ss_conf             765455431531--------101588998865767788999998500156512468877888999999998732-57776
Q gi|254780967|r  230 SQQIYVGIYQLG--------NLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQIT-SNHPI  300 (398)
Q Consensus       230 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  300 (398)
T Consensus       238 gN~fL~~~~~~P~FA~SF~vk~asi~ms~sQ~sE~~FiLtiPFFlkRfGIK~V~l~s~Vaw~lRfg---fF~YGsdp~~f  314 (435)
T TIGR00889       238 GNGFLHEFGKDPEFADSFVVKNASILMSLSQFSEILFILTIPFFLKRFGIKKVLLLSLVAWALRFG---FFAYGSDPEYF  314 (435)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HEEECCCCCHH
T ss_conf             452101125788620112321328877488999999998522553134478999999999999876---50307898548


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----H-------HHH
Q ss_conf             40379989989999999999999999-9853466769999999999999999999999999-83-----1-------179
Q gi|254780967|r  301 HLLIFIAFFFLASFQFGLINSNFSSI-SMEPFSHLAGTASSIFGFINTVISTILGIIIGQS-FN-----G-------TTY  366 (398)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~a~~l~~~~~~~~~~~~~~~~g~~-~~-----~-------~~~  366 (398)
T Consensus       315 g~~LL~Ls~ivyG~afDFfnisgsvfVek~v~~~iRasAQGl~~~~~~GfG~~lG~~lsG~~ve~~~~~gePvnGL~~dW  394 (435)
T TIGR00889       315 GYVLLLLSMIVYGCAFDFFNISGSVFVEKEVPVAIRASAQGLFLLMVNGFGSLLGYILSGVVVEKYFADGEPVNGLVFDW  394 (435)
T ss_pred             HHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECC
T ss_conf             99999999999865441034457899600278666678889999997017777754456366643312787445414055


Q ss_pred             HHHHH-HHHH-HHHHHHHHHHHHCCHH---HHHHHCC
Q ss_conf             99999-9999-9999999999942200---0343069
Q gi|254780967|r  367 PITIG-FFGI-AVSSFICILIVEKNQM---FRKTELR  398 (398)
Q Consensus       367 ~~~~~-~~~~-~~~~~~~~~~~~~~~~---~r~~~~r  398 (398)
T Consensus       395 ~t~Wl~fAgy~~~lAv~Fm~~Fky~~~eit~~k~~~r  431 (435)
T TIGR00889       395 QTVWLVFAGYIVILAVLFMIFFKYSHNEITAIKVDDR  431 (435)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             1367899999999999998763025664000235764