HHsearch alignment for GI: 254780967 and conserved domain: TIGR00897
>TIGR00897 2A0118 polyol permease; InterPro: IPR004748 Proteins in this entry are mostly known or predicted polyol transporters. The best characterised of these proteins are DalT and RbtT from Klebsiella pneumoniae, which tranpsort D-arabinatol and ribotol respectively. Like other members of the Major Facilitator Superfamily (MFS), DalT and RbtT appear to be secondary transporters capable only of transporting solutes in response to chemiosmotic ion gradients . They contain a total of twelve predicted transmembrane helices; six in the N-terminal portion of the protein, and six in the C-terminal portion. Residues defining substrate specificity lie in the N-terminal region of these proteins.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=99.89 E-value=1.9e-20 Score=129.18 Aligned_cols=330 Identities=11% Similarity=0.111 Sum_probs=228.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---HCC-CCHHHHCCCCCC
Q ss_conf 9999998199988999999999999999999999999865082899999999999999985---100-110111002232
Q gi|254780967|r 25 LPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM---VTI-NSFTGMLCMRLI 100 (398)
Q Consensus 25 lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~---~~a-~~~~~l~~~r~l 100 (398)
T Consensus 41 LSpfl~~~Gls~~~sa-s~Ft~YGiA~aisaW~SGv~~e~~gp~kTM~~Gll~~~~g~aaFivfg~~h~nyp~~l~~Y~~ 119 (411)
T TIGR00897 41 LSPFLVELGLSVQQSA-SLFTLYGIAVAISAWLSGVVVEIIGPKKTMMIGLLLYVVGSAAFIVFGLEHLNYPLLLLFYAI 119 (411)
T ss_pred HHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3289996188887899-999999999999988888999864221678999999999999999986888889999998888
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1001111111000123321000111122122331000111-111111122221111110145678888877778887616
Q gi|254780967|r 101 QGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMP-ILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRF 179 (398)
Q Consensus 101 ~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~-~igp~ig~~l~~~~~gWr~~f~~~~~~~~~~~~~~~~~~ 179 (398)
T Consensus 120 rGlgYPLFaYSFlvwv~y~~~~~~ls~AvGWFW~~y~~G~~VfG~~ysSyaip-afGe~nTLWsal~fv~~Gg~~AL~~~ 198 (411)
T TIGR00897 120 RGLGYPLFAYSFLVWVVYNTKQDKLSSAVGWFWIVYSIGLGVFGSYYSSYAIP-AFGELNTLWSALLFVLTGGVLALFIN 198 (411)
T ss_pred HHCCCHHHHHHHHHHHEEECCHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 84021788887672220212411003317899999997465430122012555-30323468999999999899999987
Q ss_pred CCCCCHHHHC----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q ss_conf 7886402210----1111112333100000000025677788763100146888765455431531101-5889988657
Q gi|254780967|r 180 PETLDPRDVR----PLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNLF-PIAFAVGGFA 254 (398)
Q Consensus 180 pet~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 254 (398)
T Consensus 199 kd~ftp~~~qnlt~~ek~~EL~ka~TilftNp~vl~gg~vriIN~ig~fGFavflPmm~~a~~G~StseWLQiWg~~Ff~ 278 (411)
T TIGR00897 199 KDKFTPKKKQNLTTREKFEELGKAVTILFTNPKVLLGGVVRIINTIGLFGFAVFLPMMFLAELGFSTSEWLQIWGTLFFT 278 (411)
T ss_pred HHCCCHHHHHCCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 52058066524666700677740000201078400002788776132213467635899976387402589999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67788999998500156512468-87788899999999873257776403799899899999999999999999853466
Q gi|254780967|r 255 MSIASFINSRLVEKFGIRRVSHY-SLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFSH 333 (398)
Q Consensus 255 ~~~~~~~~~~l~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (398)
T Consensus 279 nIvfN~ifGivGdKlGW~~~V~WFGgvG~giftlalYY~P--~~~Ghs~av~~iia~~~G~~lAgy-VPl~A~~Ptlapk 355 (411)
T TIGR00897 279 NIVFNVIFGIVGDKLGWKNTVIWFGGVGCGIFTLALYYIP--QFIGHSFAVVLIIAIIYGILLAGY-VPLAAVLPTLAPK 355 (411)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCC
T ss_conf 9999999975414468731667637645899999998656--652258999999999999999866-3488742234899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 769999999999999999999999999
Q gi|254780967|r 334 LAGTASSIFGFINTVISTILGIIIGQS 360 (398)
Q Consensus 334 ~~G~a~~l~~~~~~~~~~~~~~~~g~~ 360 (398)
T Consensus 356 ~KGAA~SVlNL~a-GlsaF~aPaia~l 381 (411)
T TIGR00897 356 DKGAAMSVLNLSA-GLSAFVAPAIAVL 381 (411)
T ss_pred CCCHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 8731564888886-2887888999999