HHsearch alignment for GI: 254780967 and conserved domain: TIGR00897
>TIGR00897 2A0118 polyol permease; InterPro: IPR004748 Proteins in this entry are mostly known or predicted polyol transporters. The best characterised of these proteins are DalT and RbtT from Klebsiella pneumoniae, which tranpsort D-arabinatol and ribotol respectively. Like other members of the Major Facilitator Superfamily (MFS), DalT and RbtT appear to be secondary transporters capable only of transporting solutes in response to chemiosmotic ion gradients . They contain a total of twelve predicted transmembrane helices; six in the N-terminal portion of the protein, and six in the C-terminal portion. Residues defining substrate specificity lie in the N-terminal region of these proteins.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=98.82 E-value=3.6e-09 Score=67.08 Aligned_cols=158 Identities=21% Similarity=0.286 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHCCC-
Q ss_conf 99886576699999999998199988999999999999999999999999865082899-9999999999999851001-
Q gi|254780967|r 12 AINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIV-MMFGLVIHIISTFIMVTIN- 89 (398)
Q Consensus 12 ~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~-l~~g~~~~~i~~~~~~~a~- 89 (398)
T Consensus 243 ~ig~fGFavflPm--m~~a~~G~StseWLQ-iWg~~Ff~nIvfN~ifGivGdKlGW~~~V~WFGgvG~giftlalYY~P~ 319 (411)
T TIGR00897 243 TIGLFGFAVFLPM--MFLAELGFSTSEWLQ-IWGTLFFTNIVFNVIFGIVGDKLGWKNTVIWFGGVGCGIFTLALYYIPQ 319 (411)
T ss_pred HHHHCCHHHHHHH--HHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf 1322134676358--999763874025899-9999999999999999754144687316676376458999999986566
Q ss_pred ----CHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ----1011100223210011111110001233210001111221223310001111111111222211111101456788
Q gi|254780967|r 90 ----SFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMG 165 (398)
Q Consensus 90 ----~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~ 165 (398)
T Consensus 320 ~~Ghs~av~~iia~~~G~~lAgyVPl~-A~~Ptla-pk~KGAA~SVlNL~aGlsaF~aPaia~lfig~-~ga~GVv~ifa 396 (411)
T TIGR00897 320 FIGHSFAVVLIIAIIYGILLAGYVPLA-AVLPTLA-PKDKGAAMSVLNLSAGLSAFVAPAIAVLFIGL-LGAIGVVWIFA 396 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHH
T ss_conf 522589999999999999998663488-7422348-99873156488888628878889999999850-02027999999
Q ss_pred HHHHHHHHHH
Q ss_conf 8887777888
Q gi|254780967|r 166 VITTFITLWY 175 (398)
Q Consensus 166 ~~~~~~~~~~ 175 (398)
T Consensus 397 ALY~~safLt 406 (411)
T TIGR00897 397 ALYLVSAFLT 406 (411)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998