HHsearch alignment for GI: 254780967 and conserved domain: TIGR00897

>TIGR00897 2A0118 polyol permease; InterPro: IPR004748 Proteins in this entry are mostly known or predicted polyol transporters. The best characterised of these proteins are DalT and RbtT from Klebsiella pneumoniae, which tranpsort D-arabinatol and ribotol respectively. Like other members of the Major Facilitator Superfamily (MFS), DalT and RbtT appear to be secondary transporters capable only of transporting solutes in response to chemiosmotic ion gradients . They contain a total of twelve predicted transmembrane helices; six in the N-terminal portion of the protein, and six in the C-terminal portion. Residues defining substrate specificity lie in the N-terminal region of these proteins.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=98.82  E-value=3.6e-09  Score=67.08  Aligned_cols=158  Identities=21%  Similarity=0.286  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHCCC-
Q ss_conf             99886576699999999998199988999999999999999999999999865082899-9999999999999851001-
Q gi|254780967|r   12 AINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIV-MMFGLVIHIISTFIMVTIN-   89 (398)
Q Consensus        12 ~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~-l~~g~~~~~i~~~~~~~a~-   89 (398)
T Consensus       243 ~ig~fGFavflPm--m~~a~~G~StseWLQ-iWg~~Ff~nIvfN~ifGivGdKlGW~~~V~WFGgvG~giftlalYY~P~  319 (411)
T TIGR00897       243 TIGLFGFAVFLPM--MFLAELGFSTSEWLQ-IWGTLFFTNIVFNVIFGIVGDKLGWKNTVIWFGGVGCGIFTLALYYIPQ  319 (411)
T ss_pred             HHHHCCHHHHHHH--HHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf             1322134676358--999763874025899-9999999999999999754144687316676376458999999986566


Q ss_pred             ----CHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             ----1011100223210011111110001233210001111221223310001111111111222211111101456788
Q gi|254780967|r   90 ----SFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMG  165 (398)
Q Consensus        90 ----~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~  165 (398)
T Consensus       320 ~~Ghs~av~~iia~~~G~~lAgyVPl~-A~~Ptla-pk~KGAA~SVlNL~aGlsaF~aPaia~lfig~-~ga~GVv~ifa  396 (411)
T TIGR00897       320 FIGHSFAVVLIIAIIYGILLAGYVPLA-AVLPTLA-PKDKGAAMSVLNLSAGLSAFVAPAIAVLFIGL-LGAIGVVWIFA  396 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHH
T ss_conf             522589999999999999998663488-7422348-99873156488888628878889999999850-02027999999


Q ss_pred             HHHHHHHHHH
Q ss_conf             8887777888
Q gi|254780967|r  166 VITTFITLWY  175 (398)
Q Consensus       166 ~~~~~~~~~~  175 (398)
T Consensus       397 ALY~~safLt  406 (411)
T TIGR00897       397 ALYLVSAFLT  406 (411)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999998