HHsearch alignment for GI: 254780967 and conserved domain: TIGR00898

>TIGR00898 2A0119 cation transport protein; InterPro: IPR004749 Organic cation transport proteins belong to this group. The protein from human is a sodium-dependent, high affinity carnitine transporter that also transports organic cations without the involvement of sodium. It is involved in the active cellular uptake of carnitine.; GO: 0015075 ion transmembrane transporter activity, 0006811 ion transport, 0016021 integral to membrane.
Probab=100.00  E-value=9.7e-34  Score=202.51  Aligned_cols=364  Identities=16%  Similarity=0.133  Sum_probs=245.6

Q ss_pred             HHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
Q ss_conf             99999998199988--9999999999999999999999998650828999999999999999851001101110022321
Q gi|254780967|r   24 CLPKISDSLHLSNE--NYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQ  101 (398)
Q Consensus        24 ~lp~i~~~l~~s~~--~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~~~~~l~~~r~l~  101 (398)
T Consensus       124 ~~stiv~EW~LvC~~~~~~~L~~s~~~~G~L~Gs~~~G~lsDrfGRk~~L~~s~l~~~~~g~~~a~SP~~~~~~vfR~L~  203 (557)
T TIGR00898       124 FSSTIVTEWDLVCEDAWKVDLTQSLFFVGVLLGSLVLGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV  203 (557)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             48735885274300257766889999999998688887786352048999999999988786512756899999999996


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCCCCCCC-CCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             001111111000123321000111122122-3310001111111111222211111101456788888777788876167
Q gi|254780967|r  102 GIGGAAPRIITISIIRDIYDGRDMAKVLSI-AMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFP  180 (398)
Q Consensus       102 G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~-~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~~~~~~~~~~~~p  180 (398)
T Consensus       204 G~~~~g~~~~~~~L~~E~~~~~~R~~~~~lG~~~~~~~G~~~L~l~A-Y~~~~S-gWR~L~l~~s~P~~~~~~~~rw~vp  281 (557)
T TIGR00898       204 GMGIAGIWVVAVVLNTEFLPKKQRAIVGILGIQVFFSLGLLLLPLVA-YFIPDS-GWRWLQLAVSLPLFIFLLLSRWFVP  281 (557)
T ss_pred             HHHHCCEEEEEEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHH-HHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             13100202577776775327366157661035888887699987788-653785-5899999999889999999877710


Q ss_pred             CCCCH-------------------HH-------------------HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             88640-------------------22-------------------10111111233310000000002567778876310
Q gi|254780967|r  181 ETLDP-------------------RD-------------------VRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGA  222 (398)
Q Consensus       181 et~~~-------------------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (398)
T Consensus       282 ESpRWL~~~gr~~~A~~~L~~~A~~Ng~~~eg~~~~~~~~~~~~~~~~~~~k~~~~~~~~L~rtp~lr~~tl~l~~~Wf~  361 (557)
T TIGR00898       282 ESPRWLISQGRIEEALKILQRVAKINGKKEEGGKLPAEVLSLSLEKELSSKKAQKPSFLDLFRTPQLRKTTLILMMLWFT  361 (557)
T ss_pred             CCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             13125642485789999999985337861553326603330025666542200143215540687899999999999999


Q ss_pred             -CHHHHHHHHHHHHHHCCCC----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             -0146888765455431531----------------------10158899886576778899999850015651246887
Q gi|254780967|r  223 -ILGFVNSSQQIYVGIYQLG----------------------NLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSL  279 (398)
Q Consensus       223 -~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~  279 (398)
T Consensus       362 ~~f~YyGL--~l~~~~l~~n~D~C~~~~~~~~~~~~~C~~L~~~~Y~~~~~~glve~Pa~~~~~l~i~~LgRr~~~a~~~  439 (557)
T TIGR00898       362 TAFSYYGL--VLDLENLGGNGDVCSISLFKKAVEAKVCEYLSKEIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASL  439 (557)
T ss_pred             HHHHHHHH--HHHHHCCCCCCCEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             88999877--7532114787440023100044100222110089999999999988899998898876217767999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             788899999999873257776403799899899999999999999999853466-7699999999999999999999999
Q gi|254780967|r  280 LIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFSH-LAGTASSIFGFINTVISTILGIIIG  358 (398)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~a~~l~~~~~~~~~~~~~~~~g  358 (398)
T Consensus       440 ~~ag~~~l~~~~~~~~~~~-~~G~l~t~L~~~g~~~~~~aF~~~ylyt~ELYPT~~Rn~G~g~~S~m~r~G~i~-~P~~~  517 (557)
T TIGR00898       440 LLAGVALLLLLFVPEELYF-YNGWLRTALAVLGKAGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII-SPFLV  517 (557)
T ss_pred             HHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf             9999999999986312355-306999999999999888872542220565015899999999999999875799-99999


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             9-9831179999999999999999999994220003
Q gi|254780967|r  359 Q-SFNGTTYPITIGFFGIAVSSFICILIVEKNQMFR  393 (398)
Q Consensus       359 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  393 (398)
T Consensus       518 ~~~~~~~~~lP~~~fG~~~~l~~~~~l~LPEt~g~~  553 (557)
T TIGR00898       518 YRLGEVWLFLPLVIFGVLALLAGILTLLLPETKGVP  553 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             998554454589999999999999988521016888