HHsearch alignment for GI: 254780967 and conserved domain: TIGR00898
>TIGR00898 2A0119 cation transport protein; InterPro: IPR004749 Organic cation transport proteins belong to this group. The protein from human is a sodium-dependent, high affinity carnitine transporter that also transports organic cations without the involvement of sodium. It is involved in the active cellular uptake of carnitine.; GO: 0015075 ion transmembrane transporter activity, 0006811 ion transport, 0016021 integral to membrane.
Probab=100.00 E-value=9.7e-34 Score=202.51 Aligned_cols=364 Identities=16% Similarity=0.133 Sum_probs=245.6
Q ss_pred HHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
Q ss_conf 99999998199988--9999999999999999999999998650828999999999999999851001101110022321
Q gi|254780967|r 24 CLPKISDSLHLSNE--NYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQ 101 (398)
Q Consensus 24 ~lp~i~~~l~~s~~--~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~~~~~l~~~r~l~ 101 (398)
T Consensus 124 ~~stiv~EW~LvC~~~~~~~L~~s~~~~G~L~Gs~~~G~lsDrfGRk~~L~~s~l~~~~~g~~~a~SP~~~~~~vfR~L~ 203 (557)
T TIGR00898 124 FSSTIVTEWDLVCEDAWKVDLTQSLFFVGVLLGSLVLGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 203 (557)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 48735885274300257766889999999998688887786352048999999999988786512756899999999996
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCCCCCCCC-CCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 001111111000123321000111122122-3310001111111111222211111101456788888777788876167
Q gi|254780967|r 102 GIGGAAPRIITISIIRDIYDGRDMAKVLSI-AMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFP 180 (398)
Q Consensus 102 G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~-~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~~~~~~~~~~~~p 180 (398)
T Consensus 204 G~~~~g~~~~~~~L~~E~~~~~~R~~~~~lG~~~~~~~G~~~L~l~A-Y~~~~S-gWR~L~l~~s~P~~~~~~~~rw~vp 281 (557)
T TIGR00898 204 GMGIAGIWVVAVVLNTEFLPKKQRAIVGILGIQVFFSLGLLLLPLVA-YFIPDS-GWRWLQLAVSLPLFIFLLLSRWFVP 281 (557)
T ss_pred HHHHCCEEEEEEEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHH-HHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13100202577776775327366157661035888887699987788-653785-5899999999889999999877710
Q ss_pred CCCCH-------------------HH-------------------HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88640-------------------22-------------------10111111233310000000002567778876310
Q gi|254780967|r 181 ETLDP-------------------RD-------------------VRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGA 222 (398)
Q Consensus 181 et~~~-------------------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (398)
T Consensus 282 ESpRWL~~~gr~~~A~~~L~~~A~~Ng~~~eg~~~~~~~~~~~~~~~~~~~k~~~~~~~~L~rtp~lr~~tl~l~~~Wf~ 361 (557)
T TIGR00898 282 ESPRWLISQGRIEEALKILQRVAKINGKKEEGGKLPAEVLSLSLEKELSSKKAQKPSFLDLFRTPQLRKTTLILMMLWFT 361 (557)
T ss_pred CCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 13125642485789999999985337861553326603330025666542200143215540687899999999999999
Q ss_pred -CHHHHHHHHHHHHHHCCCC----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf -0146888765455431531----------------------10158899886576778899999850015651246887
Q gi|254780967|r 223 -ILGFVNSSQQIYVGIYQLG----------------------NLFPIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSL 279 (398)
Q Consensus 223 -~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~ 279 (398)
T Consensus 362 ~~f~YyGL--~l~~~~l~~n~D~C~~~~~~~~~~~~~C~~L~~~~Y~~~~~~glve~Pa~~~~~l~i~~LgRr~~~a~~~ 439 (557)
T TIGR00898 362 TAFSYYGL--VLDLENLGGNGDVCSISLFKKAVEAKVCEYLSKEIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASL 439 (557)
T ss_pred HHHHHHHH--HHHHHCCCCCCCEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 88999877--7532114787440023100044100222110089999999999988899998898876217767999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788899999999873257776403799899899999999999999999853466-7699999999999999999999999
Q gi|254780967|r 280 LIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEPFSH-LAGTASSIFGFINTVISTILGIIIG 358 (398)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~a~~l~~~~~~~~~~~~~~~~g 358 (398)
T Consensus 440 ~~ag~~~l~~~~~~~~~~~-~~G~l~t~L~~~g~~~~~~aF~~~ylyt~ELYPT~~Rn~G~g~~S~m~r~G~i~-~P~~~ 517 (557)
T TIGR00898 440 LLAGVALLLLLFVPEELYF-YNGWLRTALAVLGKAGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII-SPFLV 517 (557)
T ss_pred HHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 9999999999986312355-306999999999999888872542220565015899999999999999875799-99999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 9-9831179999999999999999999994220003
Q gi|254780967|r 359 Q-SFNGTTYPITIGFFGIAVSSFICILIVEKNQMFR 393 (398)
Q Consensus 359 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 393 (398)
T Consensus 518 ~~~~~~~~~lP~~~fG~~~~l~~~~~l~LPEt~g~~ 553 (557)
T TIGR00898 518 YRLGEVWLFLPLVIFGVLALLAGILTLLLPETKGVP 553 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 998554454589999999999999988521016888