HHsearch alignment for GI: 254780967 and conserved domain: TIGR00898
>TIGR00898 2A0119 cation transport protein; InterPro: IPR004749 Organic cation transport proteins belong to this group. The protein from human is a sodium-dependent, high affinity carnitine transporter that also transports organic cations without the involvement of sodium. It is involved in the active cellular uptake of carnitine.; GO: 0015075 ion transmembrane transporter activity, 0006811 ion transport, 0016021 integral to membrane.
Probab=98.55 E-value=7.2e-07 Score=54.38 Aligned_cols=116 Identities=12% Similarity=0.095 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58899886576778899999850015651246887788899999999873257776403799899899999999999999
Q gi|254780967|r 245 PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFS 324 (398)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (398)
T Consensus 143 ~L~~s~~~~G~L~Gs~~~G~lsDrfGRk~~L~~s~l~~~~~g~~~a-------~SP~~~~~~vfR~L~G~~~~g~~~~~~ 215 (557)
T TIGR00898 143 DLTQSLFFVGVLLGSLVLGYLSDRFGRKKVLLLSTLVTAVSGVLTA-------FSPNYTVFLVFRLLVGMGIAGIWVVAV 215 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 6889999999998688887786352048999999999988786512-------756899999999996131002025777
Q ss_pred HHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99985346-6769999999-99999999999999999983117999
Q gi|254780967|r 325 SISMEPFS-HLAGTASSIF-GFINTVISTILGIIIGQSFNGTTYPI 368 (398)
Q Consensus 325 ~~~~~~~~-~~~G~a~~l~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 368 (398)
T Consensus 216 ~L~~E~~~~~~R~~~~-~lG~~~~~~~G~~~L~l~AY~~~~SgWR~ 260 (557)
T TIGR00898 216 VLNTEFLPKKQRAIVG-ILGIQVFFSLGLLLLPLVAYFIPDSGWRW 260 (557)
T ss_pred EEEEEECCCCCCEEEE-EEHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 7677532736615766-10358888876999877886537855899