HHsearch alignment for GI: 254780967 and conserved domain: TIGR00901
>TIGR00901 2A0125 AmpG-related permease; InterPro: IPR004752 The signal transducer encoded by ampG is essential for induction of chromosomal AmpC beta-lactamase in Escherichia coli by beta-lactam antibiotics and 'unspecific' inducers . The ampG protein probably acts as a permease in the beta-lactamase induction system and in peptidoglycan recycling..
Probab=98.68 E-value=1.1e-05 Score=47.87 Aligned_cols=157 Identities=18% Similarity=0.245 Sum_probs=113.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----C----CHHH-HHHHHHHHHHHHHHHHCCC----
Q ss_conf 999999981999889999999999999999999999998650-----8----2899-9999999999999851001----
Q gi|254780967|r 24 CLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRF-----G----RKIV-MMFGLVIHIISTFIMVTIN---- 89 (398)
Q Consensus 24 ~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~-----G----rr~~-l~~g~~~~~i~~~~~~~a~---- 89 (398)
T Consensus 10 ~lp~wL~~~~v~~~~iG--~~S~~~lpYsl-KfLWsPl~D~~~~~~~G~~~GRRrsWl~~tq~~L~~~l~~~s~~~P~~~ 86 (531)
T TIGR00901 10 TLPVWLRSKNVSLKTIG--FFSLVGLPYSL-KFLWSPLLDTYYLPFLGKLLGRRRSWLVLTQVLLLLLLLILSFLDPRLL 86 (531)
T ss_pred HHHHHHHHCCCCHHHHH--HHHHHHHHHHH-HHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 28877402067888999--99999999999-9997201362245636641453046899999999999999972286200
Q ss_pred --------CHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC-----
Q ss_conf --------1011100223210011111110001233210001111221223310001111111111222211111-----
Q gi|254780967|r 90 --------SFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGG----- 156 (398)
Q Consensus 90 --------~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~g----- 156 (398)
T Consensus 87 ~~tDD~~~~l~~l~~~a~L~~F~SAtQDI~~DA~r~~il~~e~lG~~s~~~~~Gyr~g~Ll~~~l~-L~La~~~~~n~~~ 165 (531)
T TIGR00901 87 SKTDDRSTDLPLLAGLAFLIAFFSATQDIVLDAWRLEILSDEELGYGSTIYIVGYRVGMLLAGSLA-LVLASALFANKYL 165 (531)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH
T ss_conf 036788742999999999999985425578774666216845567889999999999999887999-9997476403000
Q ss_pred ------------CCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf ------------1014567888887777888761678864
Q gi|254780967|r 157 ------------WIGIFVCMGVITTFITLWYYIRFPETLD 184 (398)
Q Consensus 157 ------------Wr~~f~~~~~~~~~~~~~~~~~~pet~~ 184 (398)
T Consensus 166 R~~P~~~~~~~lw~~~f~~~~l~~l~~~~~~lFL~~E~~~ 205 (531)
T TIGR00901 166 RFIPSNEGLVTLWGVIFVWTALLLLPGLLVTLFLAKEPQE 205 (531)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 0488547999999999999999999999988730247864