HHsearch alignment for GI: 254780967 and conserved domain: TIGR00903
>TIGR00903 2A0129 major facilitator 4 family protein; InterPro: IPR005277 The MFS is a very old, large and diverse superfamily that includes several hundred sequenced members. They catalyze uniport, solute:cation (H+ or Na+) symport and/or solute:H+ or solute:solute antiport. Most are of 400-600 amino acyl residues in length and possess either 12 or 14 putative transmembrane a-helical spanners. They exhibit specificity for sugars, polyols, drugs, neurotransmitters, Krebs cycle metabolites, phosphorylated glycolytic intermediates, amino acids, peptides, osmolites, nucleosides, organic anions, inorganic anions, etc. They are found ubiquitously in all three kingdoms of living organisms. The generalized transport reactions catalyzed by MFS porters are: (1)Uniport: S (out) S (in). (2)Symport: S (out) + [H+ or Na+] (out) ---> S (in) + [H+ or Na+] (in). (3)Antiport: S1 (out) + S2 (in) S1 (in) + S2 (out), (S1 may be H+ or a solute) This family of proteins are uncharacterised proteins from archaea, which may be major facilitators. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. .
Probab=99.63 E-value=5.2e-14 Score=93.76 Aligned_cols=353 Identities=15% Similarity=0.209 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHCCCC
Q ss_conf 699999999998199988999999999999999999999999865082899999999999999985100-1101110022
Q gi|254780967|r 20 IILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTI-NSFTGMLCMR 98 (398)
Q Consensus 20 ~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a-~~~~~l~~~r 98 (398)
T Consensus 9 TySPV~~LV~E~~~VS~E~~GLLA~-~YP~~FL~LTIPSG~LLDR~F~~-Wl~~G~~~T~~A~~~RL~~Pl~Y~WLL~CQ 86 (368)
T TIGR00903 9 TYSPVLSLVAEDLDVSKELLGLLAV-VYPIAFLILTIPSGLLLDRDFKR-WLLVGVLLTFAAAVLRLLDPLSYEWLLVCQ 86 (368)
T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 2100357765223443888989999-99999999860422443266768-999999999988998730500078999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32100111111100012332100011112212233100011111111112222111111014567888887777888761
Q gi|254780967|r 99 LIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIR 178 (398)
Q Consensus 99 ~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~~~~~~~~~~~ 178 (398)
T Consensus 87 ~~~ALGQPlLLN~F~P~AS~~~-~ERR~~V~S~LSl~MYLG~~yAL~~G-~~~YT~~GL~~L~~P~A~V~~A~~~L~~~~ 164 (368)
T TIGR00903 87 LLAALGQPLLLNAFVPAASTLR-EERRDLVVSLLSLAMYLGIVYALAAG-LKLYTALGLTLLILPIAVVAAASVVLVLIA 164 (368)
T ss_pred HHHHHCCHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9986154157762123001335-13578999999999999999998757-999998558999878999988899999986
Q ss_pred CCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 67886402210111111233310000000002567778876310014688876545543153110158899886576778
Q gi|254780967|r 179 FPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLGNLFPIAFAVGGFAMSIA 258 (398)
Q Consensus 179 ~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (398)
T Consensus 165 ~~A-~~~~~~~~lGfkd~V~~F~~~~~R~DLW~~G~ILGlGVA~FDNl~~WL~~A-L~~~GL~~~AG~~VALA~~~GL~G 242 (368)
T TIGR00903 165 LRA-LRFTKAESLGFKDVVKEFRLLLKRKDLWLLGLILGLGVALFDNLAIWLEAA-LRSKGLEDVAGDAVALALLLGLVG 242 (368)
T ss_pred HHC-CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 311-110012346458899987886403238989899976899987899998762-071461121024999999982401
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-H
Q ss_conf 89999985001565124688778889999999987325777640379989989999999999999999985----346-6
Q gi|254780967|r 259 SFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISME----PFS-H 333 (398)
Q Consensus 259 ~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~ 333 (398)
T Consensus 243 VAVIP~RV~R~~LR~~Y~R~~--~~L~A~ly~~LAl~~~----~~~~~~l~~~~G----L~MLPAY~~IM~WI~~y~D~~ 312 (368)
T TIGR00903 243 VAVIPDRVVRVNLRSIYIRAI--ALLVAVLYLILALELS----RLLLFALLGLAG----LLMLPAYAVIMDWISKYYDKR 312 (368)
T ss_pred EEECCCCEEEHHHHHHHHHHH--HHHHHHHHHHHHHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCC
T ss_conf 314487303300689999999--9999999999998888----999999875778----886115889998764540642
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 76999999999999999999999999983117999999999999999999999422
Q gi|254780967|r 334 LAGTASSIFGFINTVISTILGIIIGQSFNGTTYPITIGFFGIAVSSFICILIVEKN 389 (398)
Q Consensus 334 ~~G~a~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (398)
T Consensus 313 ~~G~A~G~~Gl~SR~~~V~L~~~A~~F~S-S~~~YFTyL~~~~T~AF~~~LLLP~D 367 (368)
T TIGR00903 313 LQGKAAGAVGLVSRILSVALALAATLFLS-SAELYFTYLAVLITVAFILALLLPSD 367 (368)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 04430215888999999999999999853-48899999999999999999708899