HHsearch alignment for GI: 254780967 and conserved domain: TIGR00924
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter); InterPro: IPR005279 The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The PTR family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analysis of a number of recently discovered peptide transport proteins . This family consists of bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. .
Probab=99.53 E-value=9.9e-12 Score=81.17 Aligned_cols=151 Identities=14% Similarity=0.167 Sum_probs=119.3
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHCCC-CHHHHCCCCCCCCCCCCCC
Q ss_conf 81999889999999999999999999999998650-828999999999999999851001-1011100223210011111
Q gi|254780967|r 31 SLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRF-GRKIVMMFGLVIHIISTFIMVTIN-SFTGMLCMRLIQGIGGAAP 108 (398)
Q Consensus 31 ~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~-Grr~~l~~g~~~~~i~~~~~~~a~-~~~~l~~~r~l~G~g~~~~ 108 (398)
T Consensus 49 GLG~~~~~a~-~i~gays~lVYll~~~G~wfgDrVwG~~kT~~l~giV~~lGh~~la~~~~n~~~~~~gLg~iA~Gsgl~ 127 (501)
T TIGR00924 49 GLGLDKELAT-AIFGAYSALVYLLTIVGAWFGDRVWGAKKTLVLAGIVVMLGHLVLALSIYNSDLLFIGLGLIAVGSGLL 127 (501)
T ss_pred CCCCCCCCCH-HHHHHHHHHHHHHHHCCCHHHCEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHH
T ss_conf 6665645102-122578999999985141320111253043345659999889997216665468999999998723524
Q ss_pred CCCCHHHHHHHHCCCC-CCC---CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 1100012332100011-112---212233100011111111112222111111014567888887777888761678864
Q gi|254780967|r 109 RIITISIIRDIYDGRD-MAK---VLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYYIRFPETLD 184 (398)
Q Consensus 109 ~~~~~a~i~~~~~~~~-~~~---~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~~~~~~~~~~~~pet~~ 184 (398)
T Consensus 128 Kan~ssmvg~lYe~~d~rPrrDggFt~FYm~INiG~f~~pll~g-~i~en~g~h~gf~laa-VGm~~gll~f~~gr~~l~ 205 (501)
T TIGR00924 128 KANASSMVGKLYERDDDRPRRDGGFTVFYMSINIGSFISPLLIG-VIAENVGYHLGFALAA-VGMALGLLRFLLGRKNLR 205 (501)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHH-HHHHHHHHHHHHHCCCCC
T ss_conf 42289999985169899844022113678899899999888753-6765224267888999-999999999973024688