HHsearch alignment for GI: 254780967 and conserved domain: TIGR00924

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter); InterPro: IPR005279 The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The PTR family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analysis of a number of recently discovered peptide transport proteins . This family consists of bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. .
Probab=96.78  E-value=0.023  Score=29.60  Aligned_cols=119  Identities=8%  Similarity=0.060  Sum_probs=53.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CC--HHHHHHHHHHHHHHHHHHHH-----HCCCCCCCCHHHHHH
Q ss_conf             531101588998865767788999998500156---51--24688778889999999987-----325777640379989
Q gi|254780967|r  239 QLGNLFPIAFAVGGFAMSIASFINSRLVEKFGI---RR--VSHYSLLIFFMITGSWLLVQ-----ITSNHPIHLLIFIAF  308 (398)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~---~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  308 (398)
T Consensus       324 g~svpv~w~qs~np~wv~~~spv~A~~wt~lgr~Gk~p~~plKF~~g~~~~gasFl~f~a~G~~fa~~g~~~~~~~~vlI  403 (501)
T TIGR00924       324 GFSVPVAWFQSLNPLWVVVLSPVLAAVWTKLGRKGKDPKTPLKFALGLLLVGASFLTFVASGLWFADAGGKASAAFLVLI  403 (501)
T ss_pred             EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf             44716200544238878898679999999847779998725788899999977999850453455338763469999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             989999999999999999985346-6769999999999999999999999
Q gi|254780967|r  309 FFLASFQFGLINSNFSSISMEPFS-HLAGTASSIFGFINTVISTILGIII  357 (398)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~a~~l~~~~~~~~~~~~~~~~  357 (398)
T Consensus       404 yl~~t~GELMiSp~gLs~~tKiaP~~~~~q~~g~wFLa~~~g~~lgG~l~  453 (501)
T TIGR00924       404 YLVQTLGELMISPVGLSVSTKIAPQKYKSQMLGLWFLAVALGSLLGGLLA  453 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99997518886243211344036535778999999999999887630454