HHsearch alignment for GI: 254780967 and conserved domain: TIGR00924
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter); InterPro: IPR005279 The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The PTR family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analysis of a number of recently discovered peptide transport proteins . This family consists of bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. .
Probab=96.78 E-value=0.023 Score=29.60 Aligned_cols=119 Identities=8% Similarity=0.060 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CC--HHHHHHHHHHHHHHHHHHHH-----HCCCCCCCCHHHHHH
Q ss_conf 531101588998865767788999998500156---51--24688778889999999987-----325777640379989
Q gi|254780967|r 239 QLGNLFPIAFAVGGFAMSIASFINSRLVEKFGI---RR--VSHYSLLIFFMITGSWLLVQ-----ITSNHPIHLLIFIAF 308 (398)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~---~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 308 (398)
T Consensus 324 g~svpv~w~qs~np~wv~~~spv~A~~wt~lgr~Gk~p~~plKF~~g~~~~gasFl~f~a~G~~fa~~g~~~~~~~~vlI 403 (501)
T TIGR00924 324 GFSVPVAWFQSLNPLWVVVLSPVLAAVWTKLGRKGKDPKTPLKFALGLLLVGASFLTFVASGLWFADAGGKASAAFLVLI 403 (501)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf 44716200544238878898679999999847779998725788899999977999850453455338763469999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989999999999999999985346-6769999999999999999999999
Q gi|254780967|r 309 FFLASFQFGLINSNFSSISMEPFS-HLAGTASSIFGFINTVISTILGIII 357 (398)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~a~~l~~~~~~~~~~~~~~~~ 357 (398)
T Consensus 404 yl~~t~GELMiSp~gLs~~tKiaP~~~~~q~~g~wFLa~~~g~~lgG~l~ 453 (501)
T TIGR00924 404 YLVQTLGELMISPVGLSVSTKIAPQKYKSQMLGLWFLAVALGSLLGGLLA 453 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99997518886243211344036535778999999999999887630454