HHsearch alignment for GI: 254780967 and conserved domain: TIGR01299
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2; InterPro: IPR005988 SV2 proteins are abundant synaptic vesicle proteins expressed in two major (SV2A and SV2B) and one minor isoform (SV2C) that resemble transporter proteins. SV2B knockout mice are phenotypically normal while SV2A- and SV2A/SV2B double knockout mice exhibit severe seizures and die postnatally. Without SV2 proteins, presynaptic Ca^2+ accumulation during consecutive action potentials causes abnormal increases in neurotransmitter release that destabilize synaptic circuits and induce epilepsy . ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=98.80 E-value=6.8e-10 Score=71.04 Aligned_cols=157 Identities=20% Similarity=0.312 Sum_probs=125.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCC
Q ss_conf 99999999819998899999999999999999999999986508289999999999999998510011011100223210
Q gi|254780967|r 23 PCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQG 102 (398)
Q Consensus 23 p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~~~~~l~~~r~l~G 102 (398)
T Consensus 188 ~~~p~~~~~~c~~~~~~g-~~g~~~~~g~~~g~~~wgg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~c~~~~g 266 (742)
T TIGR01299 188 FVLPSAEKDLCLPDSGKG-WLGLIVYLGLLVGAFLWGGLADKLGRKQCLLICLSVNGFFAFLSSFVQGYGFFLLCRLLSG 266 (742)
T ss_pred EECCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 110444332202467763-2578888888887765210233204300023321012578888877543247887887622
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC-------------CCCHHHHHHHHHHH
Q ss_conf 01111111000123321000111122122331000111111111122221111-------------11014567888887
Q gi|254780967|r 103 IGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSG-------------GWIGIFVCMGVITT 169 (398)
Q Consensus 103 ~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~-------------gWr~~f~~~~~~~~ 169 (398)
T Consensus 267 ~g~gg~~p~~~~~~~~~~~~~~~g~~~~w~c~~w~~gg~~~~~~~w~~~-p~~gw~~~~g~~~~~~~w~~-~~~~c~~p~ 344 (742)
T TIGR01299 267 FGIGGAIPTVFSYFAEFLAREKRGEHLSWLCLFWLIGGVYAAALAWAII-PHYGWSFSLGSAYQFHSWRV-FVLVCALPC 344 (742)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCHH-HHHHHHHHH
T ss_conf 5666304688888888875420353256787888753466665554431-02453212454200011001-023244334
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 7778887616788
Q gi|254780967|r 170 FITLWYYIRFPET 182 (398)
Q Consensus 170 ~~~~~~~~~~pet 182 (398)
T Consensus 345 ~~~~~~~~~~p~~ 357 (742)
T TIGR01299 345 VFAVGALTFQPES 357 (742)
T ss_pred HHHHHHHHCCCCC
T ss_conf 5554432115666