HHsearch alignment for GI: 254780967 and conserved domain: TIGR01299

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2; InterPro: IPR005988 SV2 proteins are abundant synaptic vesicle proteins expressed in two major (SV2A and SV2B) and one minor isoform (SV2C) that resemble transporter proteins. SV2B knockout mice are phenotypically normal while SV2A- and SV2A/SV2B double knockout mice exhibit severe seizures and die postnatally. Without SV2 proteins, presynaptic Ca^2+ accumulation during consecutive action potentials causes abnormal increases in neurotransmitter release that destabilize synaptic circuits and induce epilepsy . ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=98.80  E-value=6.8e-10  Score=71.04  Aligned_cols=157  Identities=20%  Similarity=0.312  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCC
Q ss_conf             99999999819998899999999999999999999999986508289999999999999998510011011100223210
Q gi|254780967|r   23 PCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQG  102 (398)
Q Consensus        23 p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~~~~~l~~~r~l~G  102 (398)
T Consensus       188 ~~~p~~~~~~c~~~~~~g-~~g~~~~~g~~~g~~~wgg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~c~~~~g  266 (742)
T TIGR01299       188 FVLPSAEKDLCLPDSGKG-WLGLIVYLGLLVGAFLWGGLADKLGRKQCLLICLSVNGFFAFLSSFVQGYGFFLLCRLLSG  266 (742)
T ss_pred             EECCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             110444332202467763-2578888888887765210233204300023321012578888877543247887887622


Q ss_pred             CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCC-------------CCCHHHHHHHHHHH
Q ss_conf             01111111000123321000111122122331000111111111122221111-------------11014567888887
Q gi|254780967|r  103 IGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSG-------------GWIGIFVCMGVITT  169 (398)
Q Consensus       103 ~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~-------------gWr~~f~~~~~~~~  169 (398)
T Consensus       267 ~g~gg~~p~~~~~~~~~~~~~~~g~~~~w~c~~w~~gg~~~~~~~w~~~-p~~gw~~~~g~~~~~~~w~~-~~~~c~~p~  344 (742)
T TIGR01299       267 FGIGGAIPTVFSYFAEFLAREKRGEHLSWLCLFWLIGGVYAAALAWAII-PHYGWSFSLGSAYQFHSWRV-FVLVCALPC  344 (742)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCHH-HHHHHHHHH
T ss_conf             5666304688888888875420353256787888753466665554431-02453212454200011001-023244334


Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             7778887616788
Q gi|254780967|r  170 FITLWYYIRFPET  182 (398)
Q Consensus       170 ~~~~~~~~~~pet  182 (398)
T Consensus       345 ~~~~~~~~~~p~~  357 (742)
T TIGR01299       345 VFAVGALTFQPES  357 (742)
T ss_pred             HHHHHHHHCCCCC
T ss_conf             5554432115666