HHsearch alignment for GI: 254780967 and conserved domain: TIGR01299
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2; InterPro: IPR005988 SV2 proteins are abundant synaptic vesicle proteins expressed in two major (SV2A and SV2B) and one minor isoform (SV2C) that resemble transporter proteins. SV2B knockout mice are phenotypically normal while SV2A- and SV2A/SV2B double knockout mice exhibit severe seizures and die postnatally. Without SV2 proteins, presynaptic Ca^2+ accumulation during consecutive action potentials causes abnormal increases in neurotransmitter release that destabilize synaptic circuits and induce epilepsy . ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=92.51 E-value=0.058 Score=27.32 Aligned_cols=105 Identities=11% Similarity=0.177 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86576778899999850015651246887788899999999873257776403799899899999999999999999853
Q gi|254780967|r 251 GGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFSSISMEP 330 (398)
Q Consensus 251 ~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (398)
T Consensus 604 g~~~~~pg~~~~~~~~~~~g~~~~~~g~~~~~~~---~c~~~~~g--~~~~~~-~~~~c~~~g~~~~-~w~~~~~~~~~~ 676 (742)
T TIGR01299 604 GTLAVLPGNIVSALLLDKIGRLTLLGGSSVLSGV---SCFFLWFG--NSESAL-IGLLCLFGGLTIA-AWNALDVLTVEL 676 (742)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHH---HHHHHCCC--CCHHHH-HHHHHHHCCCEEE-CCCCCEEEEEEE
T ss_conf 4444223046788877531002221012456544---43321026--622578-8777763452000-133210356652
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46-676999999999999999999999999983
Q gi|254780967|r 331 FS-HLAGTASSIFGFINTVISTILGIIIGQSFN 362 (398)
Q Consensus 331 ~~-~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~ 362 (398)
T Consensus 677 ~p~~~~~~~~g~~~~~c~~~~~~g~~~~~~~~~ 709 (742)
T TIGR01299 677 YPTDKRATGFGFLNALCKLAAVLGNLIFGSLVG 709 (742)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 146431024567888888888876777665655