HHsearch alignment for GI: 254780967 and conserved domain: cd06174

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=100.00  E-value=1.1e-38  Score=229.75  Aligned_cols=328  Identities=20%  Similarity=0.366  Sum_probs=254.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999886576699999999998199988999999999999999999999999865082899999999999999985
Q gi|254780967|r    6 VIAMLMAINSLGIDIILPCLPKISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIM   85 (398)
Q Consensus         6 ~l~~~~~~~~~~~~~~~p~lp~i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~   85 (398)
T Consensus         3 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~i~~~~~g~l~D~~grk~~~~~~~~~~~i~~i~~   81 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAG-LIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL   81 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999793999999-99999999999999999999998096999999999999999999


Q ss_pred             HCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             10011011100223210011111110001233210001111221223310001111111111222211111101456788
Q gi|254780967|r   86 VTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMG  165 (398)
Q Consensus        86 ~~a~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~  165 (398)
T Consensus        82 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~ig~~i~~~l~-~~~~~~~~~~~~~  160 (352)
T cd06174          82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA-ESLGWRWLFLILA  160 (352)
T ss_pred             HHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHH
T ss_conf             976329999999999862210010799999860489999999999989887567899999999999-8644899999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC-CCH
Q ss_conf             8887777888761678864022101111112333100000000025677788763100146888765455431531-101
Q gi|254780967|r  166 VITTFITLWYYIRFPETLDPRDVRPLNLYAILHSFSLIFKHRASTLYNIANSLTMGAILGFVNSSQQIYVGIYQLG-NLF  244 (398)
Q Consensus       166 ~~~~~~~~~~~~~~pet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  244 (398)
T Consensus       161 ~~~~~~~i~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (352)
T cd06174         161 ILGLLLALLLLFLL---------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA  213 (352)
T ss_pred             HHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99999999999999---------------------------999999999999999999999999999998248987777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             58899886576778899999850015651246887788899999999873257776403799899899999999999999
Q gi|254780967|r  245 PIAFAVGGFAMSIASFINSRLVEKFGIRRVSHYSLLIFFMITGSWLLVQITSNHPIHLLIFIAFFFLASFQFGLINSNFS  324 (398)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (398)
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~  287 (352)
T cd06174         214 GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLL--LAALGLLLLALAP----SLALLLVALLLLGFGLGFAFPALL  287 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH--HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7888999999999999999999982738999999999--9999999999886----599999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99985346-676999999999999999999999999983117999
Q gi|254780967|r  325 SISMEPFS-HLAGTASSIFGFINTVISTILGIIIGQSFNGTTYPI  368 (398)
Q Consensus       325 ~~~~~~~~-~~~G~a~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~  368 (398)
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~g~i~~~~g~~~  332 (352)
T cd06174         288 TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGG  332 (352)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf             999998796079999999999999999999999999999878999