HHsearch alignment for GI: 254780967 and conserved domain: cd06174
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.54 E-value=5.2e-14 Score=93.75 Aligned_cols=152 Identities=20% Similarity=0.355 Sum_probs=101.1
Q ss_pred HHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHCCCCHHHHCCCCCC
Q ss_conf 99999-999819998899999999999999999999999986508289-9999999999999985100110111002232
Q gi|254780967|r 23 PCLPK-ISDSLHLSNENYGQHLISFYLIGYGIAQIFYGPLSDRFGRKI-VMMFGLVIHIISTFIMVTINSFTGMLCMRLI 100 (398)
Q Consensus 23 p~lp~-i~~~l~~s~~~~~~~~~s~~~~~~~i~~~~~G~l~Dr~Grr~-~l~~g~~~~~i~~~~~~~a~~~~~l~~~r~l 100 (398)
T Consensus 196 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (352)
T cd06174 196 TYLPLYLQEVLGLSAAEAG-LLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLL 274 (352)
T ss_pred HHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999982489877777-888999999999999999999982738999999999999999999988659999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1001111111000123321000111122122331000111111111122221111110145678888877778887
Q gi|254780967|r 101 QGIGGAAPRIITISIIRDIYDGRDMAKVLSIAMMIFMIMPILAPSIGQATVALSGGWIGIFVCMGVITTFITLWYY 176 (398)
Q Consensus 101 ~G~g~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~g~~igp~ig~~l~~~~~gWr~~f~~~~~~~~~~~~~~~ 176 (398)
T Consensus 275 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~i~g~i~~-~~g~~~~~~i~~~~~~i~~i~~~ 349 (352)
T cd06174 275 LGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD-TGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998796079999999999999999999999999999-87899999999999999999999