HHsearch alignment for GI: 254780967 and conserved domain: pfam02487

>pfam02487 CLN3 CLN3 protein. This is a family of proteins from the CLN3 gene. A missense mutation of glutamic acid (E) to lysine (K) at position 295 in the human protein has been implicated in Juvenile neuronal ceroid lipofuscinosis (Batten disease).
Probab=98.63  E-value=4e-06  Score=50.30  Aligned_cols=130  Identities=12%  Similarity=0.033  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf             99999999999999998650828999999999999999851001101110022321001111111000123321000111
Q gi|254780967|r   46 FYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDM  125 (398)
Q Consensus        46 ~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~  125 (398)
T Consensus        62 Adi~P~l~~kl~aP~fi~~vpy~~Ri~~~~~ls~~g~l~Va~s~~~~~~L~GVvlas~ssg~GE~tfL~lt~-~y~~~--  138 (409)
T pfam02487        62 ADILPSLIIKLTAPFFIHRFPFGFRVWIVILLQASSFFLVAFSKSIAMSLAGVVFASIGSGLGEITFLALTA-HYPRI--  138 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHH-HCCHH--
T ss_conf             767889999998677333178309999999998612689998361899999999886331302999999985-45714--


Q ss_pred             CCCCCCCCCEECCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             12212233100011111111112222111--111014567888887777888761678
Q gi|254780967|r  126 AKVLSIAMMIFMIMPILAPSIGQATVALS--GGWIGIFVCMGVITTFITLWYYIRFPE  181 (398)
Q Consensus       126 ~~~~~~~~~~~~~g~~igp~ig~~l~~~~--~gWr~~f~~~~~~~~~~~~~~~~~~pe  181 (398)
T Consensus       139 --~lsawsSGTG~AGl~Gs~~Y~~-lT~~~~ls~~~tlL~~~~lp~i~~~~yf~~L~~  193 (409)
T pfam02487       139 --VIAGWSSGTGGAGLIGAFSYAF-LTQIAGLSPKHTLLVMLFIPALFAFSYFFLLTS  193 (409)
T ss_pred             --HHHHCCCCCCCHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             --5430035667156777889998-873327689999999998899999999997078