HHsearch alignment for GI: 254780967 and conserved domain: pfam02487
>pfam02487 CLN3 CLN3 protein. This is a family of proteins from the CLN3 gene. A missense mutation of glutamic acid (E) to lysine (K) at position 295 in the human protein has been implicated in Juvenile neuronal ceroid lipofuscinosis (Batten disease).
Probab=98.63 E-value=4e-06 Score=50.30 Aligned_cols=130 Identities=12% Similarity=0.033 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 99999999999999998650828999999999999999851001101110022321001111111000123321000111
Q gi|254780967|r 46 FYLIGYGIAQIFYGPLSDRFGRKIVMMFGLVIHIISTFIMVTINSFTGMLCMRLIQGIGGAAPRIITISIIRDIYDGRDM 125 (398)
Q Consensus 46 ~~~~~~~i~~~~~G~l~Dr~Grr~~l~~g~~~~~i~~~~~~~a~~~~~l~~~r~l~G~g~~~~~~~~~a~i~~~~~~~~~ 125 (398)
T Consensus 62 Adi~P~l~~kl~aP~fi~~vpy~~Ri~~~~~ls~~g~l~Va~s~~~~~~L~GVvlas~ssg~GE~tfL~lt~-~y~~~-- 138 (409)
T pfam02487 62 ADILPSLIIKLTAPFFIHRFPFGFRVWIVILLQASSFFLVAFSKSIAMSLAGVVFASIGSGLGEITFLALTA-HYPRI-- 138 (409)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHH-HCCHH--
T ss_conf 767889999998677333178309999999998612689998361899999999886331302999999985-45714--
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 12212233100011111111112222111--111014567888887777888761678
Q gi|254780967|r 126 AKVLSIAMMIFMIMPILAPSIGQATVALS--GGWIGIFVCMGVITTFITLWYYIRFPE 181 (398)
Q Consensus 126 ~~~~~~~~~~~~~g~~igp~ig~~l~~~~--~gWr~~f~~~~~~~~~~~~~~~~~~pe 181 (398)
T Consensus 139 --~lsawsSGTG~AGl~Gs~~Y~~-lT~~~~ls~~~tlL~~~~lp~i~~~~yf~~L~~ 193 (409)
T pfam02487 139 --VIAGWSSGTGGAGLIGAFSYAF-LTQIAGLSPKHTLLVMLFIPALFAFSYFFLLTS 193 (409)
T ss_pred --HHHHCCCCCCCHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf --5430035667156777889998-873327689999999998899999999997078